Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024770 | XP_013468035.1 | 87.004 | 277 | 19 | 4 | 1 | 273 | 1 | 264 | 1.06e-155 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024770 | sp|O34614|YTQB_BACSU | 37.143 | 175 | 101 | 3 | 93 | 265 | 13 | 180 | 1.96e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024770 | Msa0072910 | 0.801055 | 1.078706e-48 | -8.615850e-47 |
| Msa0024770 | Msa0094990 | 0.802713 | 4.924092e-49 | -8.615850e-47 |
| Msa0024770 | Msa0312780 | 0.802539 | 5.348469e-49 | -8.615850e-47 |
| Msa0024770 | Msa0340440 | 0.806160 | 9.412624e-50 | -8.615850e-47 |
| Msa0024770 | Msa0438440 | 0.801003 | 1.105128e-48 | -8.615850e-47 |
| Msa0024770 | Msa0498320 | 0.804513 | 2.084149e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024770 | MtrunA17_Chr1g0179071 | 87.004 | 277 | 19 | 4 | 1 | 273 | 1 | 264 | 9.74e-160 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024770 | AT1G16445.1 | 63.362 | 232 | 71 | 2 | 44 | 273 | 53 | 272 | 5.97e-105 | 306 |
Find 61 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTGTCGAATTCGTTTA+AGG | 0.130588 | 1_1:-47449781 | Msa0024770:three_prime_UTR |
| CAATGACTGTATCTCCTTTC+TGG | 0.196980 | 1_1:+47453217 | None:intergenic |
| CACCTTAGCATTGCGCAATT+TGG | 0.227250 | 1_1:-47453169 | Msa0024770:CDS |
| TTGAAGGTTATTATTATTAC+TGG | 0.247464 | 1_1:+47454113 | None:intergenic |
| TATCTTCGGAATAAGAAAAT+TGG | 0.250552 | 1_1:+47449885 | None:intergenic |
| AGATAAGACTTCACTGTTAC+TGG | 0.271461 | 1_1:-47453088 | Msa0024770:CDS |
| CTTACTAGTATTGTTAAATA+AGG | 0.281883 | 1_1:+47449808 | None:intergenic |
| AGAGAAGCAACATTGATTTC+TGG | 0.298344 | 1_1:+47454176 | None:intergenic |
| CAATATTTGCCATAGTAAAA+TGG | 0.299706 | 1_1:-47452371 | Msa0024770:CDS |
| AGGCTTGTTGCCTTCAACTT+AGG | 0.315106 | 1_1:-47451422 | Msa0024770:CDS |
| AAGATCAGAAACAACATTAC+TGG | 0.374699 | 1_1:-47451366 | Msa0024770:CDS |
| AAACCCATTAAACAAAATAA+TGG | 0.381242 | 1_1:-47454150 | Msa0024770:CDS |
| CTAGACTGTCTGTTGAGAAT+TGG | 0.385597 | 1_1:-47449953 | Msa0024770:CDS |
| TTCAACTTAGGTTATCTTCC+GGG | 0.393992 | 1_1:-47451410 | Msa0024770:CDS |
| GCAAGCTACAAATGCTAAAT+CGG | 0.395482 | 1_1:-47449923 | Msa0024770:CDS |
| GCAGGTATTTACATTATCTT+CGG | 0.414582 | 1_1:+47449871 | None:intergenic |
| ATGTAAATGGGTACCTGAAA+AGG | 0.416447 | 1_1:+47454056 | None:intergenic |
| GCTTCCTCTTTGGAAAGAAA+AGG | 0.421759 | 1_1:-47453941 | Msa0024770:CDS |
| CTTCAACTTAGGTTATCTTC+CGG | 0.423144 | 1_1:-47451411 | Msa0024770:CDS |
| CTCAGTAGTCCTCACCTCAT+TGG | 0.433397 | 1_1:+47453050 | None:intergenic |
| CTGGAGATGTTGGTTGGAGA+AGG | 0.436964 | 1_1:+47454195 | None:intergenic |
| TGAAAAGGGAGAATCGTCTT+TGG | 0.437836 | 1_1:+47454071 | None:intergenic |
| TGTTGGTTGGAGAAGGAAGA+AGG | 0.450022 | 1_1:+47454202 | None:intergenic |
| CTTCCTCTTTGGAAAGAAAA+GGG | 0.462185 | 1_1:-47453940 | Msa0024770:CDS |
| TTAGCATAGTGGTTTATGTC+GGG | 0.463191 | 1_1:-47451301 | Msa0024770:CDS |
| GTTGCTGATGAGTCACATAA+TGG | 0.464226 | 1_1:-47453147 | Msa0024770:CDS |
| AAGAAATATTACCGTCCACC+AGG | 0.491363 | 1_1:+47451275 | None:intergenic |
| CGGAAGATAACCTAAGTTGA+AGG | 0.503757 | 1_1:+47451412 | None:intergenic |
| TTGGAGAAGGAAGAAGGAAG+AGG | 0.510509 | 1_1:+47454208 | None:intergenic |
| AAATCTGTCCAGGGAAGAGT+TGG | 0.515730 | 1_1:-47449997 | Msa0024770:intron |
| AACCAAATTGCGCAATGCTA+AGG | 0.516356 | 1_1:+47453167 | None:intergenic |
| CGGAATAAGAAAATTGGTAT+CGG | 0.518914 | 1_1:+47449891 | None:intergenic |
| TGATTTCTGGAGATGTTGGT+TGG | 0.525157 | 1_1:+47454189 | None:intergenic |
| ATTATTTCTTTGTTACCTCC+CGG | 0.527941 | 1_1:+47451392 | None:intergenic |
| AGGAGGGCTTATTAGCATAG+TGG | 0.534041 | 1_1:-47451312 | Msa0024770:CDS |
| TCTGTCCAGGGAAGAGTTGG+AGG | 0.535087 | 1_1:-47449994 | Msa0024770:intron |
| CAATCAAGAAATCATATAGC+AGG | 0.536717 | 1_1:+47449853 | None:intergenic |
| TGGAAACATGTTGTCCAGAA+AGG | 0.540821 | 1_1:-47453231 | Msa0024770:CDS |
| TGTAAATGGGTACCTGAAAA+GGG | 0.548833 | 1_1:+47454057 | None:intergenic |
| TTCAAAGCAATGCCTACGTT+AGG | 0.555593 | 1_1:-47452339 | Msa0024770:intron |
| ACATTGATTTCTGGAGATGT+TGG | 0.556359 | 1_1:+47454185 | None:intergenic |
| ATTAGCATAGTGGTTTATGT+CGG | 0.565881 | 1_1:-47451302 | Msa0024770:CDS |
| ACTATGCTAATAAGCCCTCC+TGG | 0.566809 | 1_1:+47451314 | None:intergenic |
| GTTTATGTCGGGCACCCTGG+TGG | 0.569259 | 1_1:-47451290 | Msa0024770:CDS |
| TAATGGTTATGTGTACGCAT+TGG | 0.580443 | 1_1:-47453130 | Msa0024770:CDS |
| TGAAGGTTATTATTATTACT+GGG | 0.582570 | 1_1:+47454114 | None:intergenic |
| ATTGATGCGACATGTGGCAA+CGG | 0.582874 | 1_1:-47453198 | Msa0024770:CDS |
| ATGTCGGGCACCCTGGTGGA+CGG | 0.586367 | 1_1:-47451286 | Msa0024770:intron |
| GTGGTTTATGTCGGGCACCC+TGG | 0.587189 | 1_1:-47451293 | Msa0024770:CDS |
| AATGTAGAGAGAATAAAGAG+AGG | 0.590705 | 1_1:+47449743 | None:intergenic |
| AAAATTGGTATCGGAGCACA+TGG | 0.594476 | 1_1:+47449900 | None:intergenic |
| GCAGAGAGAATTCTAATACC+AGG | 0.622873 | 1_1:-47451332 | Msa0024770:CDS |
| ACAGTCATTGATGCGACATG+TGG | 0.653812 | 1_1:-47453204 | Msa0024770:CDS |
| AGAAATATTACCGTCCACCA+GGG | 0.662031 | 1_1:+47451276 | None:intergenic |
| AACTTAGGTTATCTTCCGGG+AGG | 0.667302 | 1_1:-47451407 | Msa0024770:CDS |
| GAAAATTGAGTACCTAACGT+AGG | 0.670575 | 1_1:+47452327 | None:intergenic |
| TATTTGCCATAGTAAAATGG+AGG | 0.679977 | 1_1:-47452368 | Msa0024770:CDS |
| AGTATTGTTAAATAAGGACA+AGG | 0.682690 | 1_1:+47449814 | None:intergenic |
| AGAGAATTCTAATACCAGGA+GGG | 0.691935 | 1_1:-47451328 | Msa0024770:CDS |
| GAGAGAATTCTAATACCAGG+AGG | 0.699018 | 1_1:-47451329 | Msa0024770:CDS |
| AGAATCGCTTAGTTCCAATG+AGG | 0.719596 | 1_1:-47453064 | Msa0024770:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCTTTATGTATTAT+TGG | - | chr1_1:47452480-47452499 | Msa0024770:intron | 10.0% |
| !!! | TTTTTTCTTTTTTTTTTTTG+GGG | - | chr1_1:47452773-47452792 | Msa0024770:intron | 10.0% |
| !!! | ATTTAAAATCAATTAACAAT+AGG | + | chr1_1:47453930-47453949 | None:intergenic | 10.0% |
| !! | AAAACATATTTATAAAGTGA+GGG | + | chr1_1:47451292-47451311 | None:intergenic | 15.0% |
| !! | TAAAACATATTTATAAAGTG+AGG | + | chr1_1:47451293-47451312 | None:intergenic | 15.0% |
| !! | TAGTAAAATTTAAAAGAGTT+TGG | + | chr1_1:47452091-47452110 | None:intergenic | 15.0% |
| !!! | GTTTTTATCAATAACTAATA+TGG | - | chr1_1:47452127-47452146 | Msa0024770:intron | 15.0% |
| !! | AATTAATTATATAATAGCTC+AGG | + | chr1_1:47452411-47452430 | None:intergenic | 15.0% |
| !!! | TAAAGAAAATAATTTTACCA+TGG | + | chr1_1:47452472-47452491 | None:intergenic | 15.0% |
| !!! | TATTGTTATTGAGTATAATA+AGG | - | chr1_1:47452967-47452986 | Msa0024770:intron | 15.0% |
| !!! | ATTGTTATTGAGTATAATAA+GGG | - | chr1_1:47452968-47452987 | Msa0024770:intron | 15.0% |
| !! | TATGATATATGTGTTTAATT+AGG | + | chr1_1:47453431-47453450 | None:intergenic | 15.0% |
| !!! | GATTTTAAATAACTCATTTT+TGG | - | chr1_1:47453940-47453959 | Msa0024770:CDS | 15.0% |
| !!! | AGATTTAAAAGCATTATTAT+TGG | + | chr1_1:47454007-47454026 | None:intergenic | 15.0% |
| !! | AAACCCATTAAACAAAATAA+TGG | - | chr1_1:47449868-47449887 | Msa0024770:exon | 20.0% |
| !!! | AAGCCATTATTTTGTTTAAT+GGG | + | chr1_1:47449874-47449893 | None:intergenic | 20.0% |
| !! | TGAAGGTTATTATTATTACT+GGG | + | chr1_1:47449907-47449926 | None:intergenic | 20.0% |
| !! | TTGAAGGTTATTATTATTAC+TGG | + | chr1_1:47449908-47449927 | None:intergenic | 20.0% |
| !! | GTTGAAAATGTATACATAAA+AGG | + | chr1_1:47450549-47450568 | None:intergenic | 20.0% |
| !!! | TCATTGATTCTATAATAGTT+TGG | - | chr1_1:47450570-47450589 | Msa0024770:intron | 20.0% |
| !! | AAACATATTTATAAAGTGAG+GGG | + | chr1_1:47451291-47451310 | None:intergenic | 20.0% |
| !! | CTGAAAATATCAATATACAA+CGG | + | chr1_1:47451411-47451430 | None:intergenic | 20.0% |
| !! | TTAACAGAATGATCATTAAA+AGG | + | chr1_1:47451578-47451597 | None:intergenic | 20.0% |
| !! | AAATGGAATAAATCAAATGT+TGG | + | chr1_1:47451980-47451999 | None:intergenic | 20.0% |
| !!! | AACATTTGATTTATTCCATT+TGG | - | chr1_1:47451979-47451998 | Msa0024770:intron | 20.0% |
| !!! | ATTATTCATCTTTTCTTCAA+TGG | + | chr1_1:47452233-47452252 | None:intergenic | 20.0% |
| !! | ACGAATAAAATGAAAGTAAA+AGG | - | chr1_1:47452295-47452314 | Msa0024770:intron | 20.0% |
| !!! | TTGTTATTGAGTATAATAAG+GGG | - | chr1_1:47452969-47452988 | Msa0024770:intron | 20.0% |
| !! | AATCAAAACATTATTGCTTA+AGG | + | chr1_1:47453002-47453021 | None:intergenic | 20.0% |
| !! | AGGTTGAAAGTTAAATATTT+GGG | + | chr1_1:47453095-47453114 | None:intergenic | 20.0% |
| !!! | TAGGTTGAAAGTTAAATATT+TGG | + | chr1_1:47453096-47453115 | None:intergenic | 20.0% |
| !!! | ATTGTTTTGTTTCATTAGTT+TGG | - | chr1_1:47453316-47453335 | Msa0024770:intron | 20.0% |
| !!! | TGTTGCTTTTGATTTTTTAA+TGG | - | chr1_1:47453344-47453363 | Msa0024770:intron | 20.0% |
| !! | ATGATACTAGTATCTTAAAA+TGG | - | chr1_1:47453896-47453915 | Msa0024770:intron | 20.0% |
| !! | CTTACTAGTATTGTTAAATA+AGG | + | chr1_1:47454213-47454232 | None:intergenic | 20.0% |
| !!! | GAAGCCATTATTTTGTTTAA+TGG | + | chr1_1:47449875-47449894 | None:intergenic | 25.0% |
| ! | AAGACTATAAGGATGTAAAT+GGG | + | chr1_1:47449977-47449996 | None:intergenic | 25.0% |
| ! | AAAGACTATAAGGATGTAAA+TGG | + | chr1_1:47449978-47449997 | None:intergenic | 25.0% |
| ! | TTTATGATGCAAAGACTATA+AGG | + | chr1_1:47449988-47450007 | None:intergenic | 25.0% |
| ! | ATCCTGAAAACATGAAAAAA+GGG | + | chr1_1:47450039-47450058 | None:intergenic | 25.0% |
| ! | AATCCTGAAAACATGAAAAA+AGG | + | chr1_1:47450040-47450059 | None:intergenic | 25.0% |
| ! | TTAAAACCCTCATTTGAATA+AGG | - | chr1_1:47450186-47450205 | Msa0024770:intron | 25.0% |
| !!! | TTTCATTTGTTTTTGTCAGT+AGG | - | chr1_1:47450226-47450245 | Msa0024770:intron | 25.0% |
| ! | CAATATTTGCCATAGTAAAA+TGG | - | chr1_1:47451647-47451666 | Msa0024770:intron | 25.0% |
| ! | TACACATATTCAATTACACT+TGG | + | chr1_1:47451899-47451918 | None:intergenic | 25.0% |
| ! | AATATGTGTAAATAGTCACA+TGG | - | chr1_1:47451909-47451928 | Msa0024770:intron | 25.0% |
| ! | ATATGTGTAAATAGTCACAT+GGG | - | chr1_1:47451910-47451929 | Msa0024770:intron | 25.0% |
| ! | TGATAAAAACTGTATAGCTA+AGG | + | chr1_1:47452117-47452136 | None:intergenic | 25.0% |
| !!! | TAATGTATTGTTGTTGCTTT+TGG | - | chr1_1:47452193-47452212 | Msa0024770:intron | 25.0% |
| ! | AAGCATTTCTTGAAACTTTA+AGG | - | chr1_1:47452532-47452551 | Msa0024770:intron | 25.0% |
| ! | TACTTCAAACATAGAAAATC+AGG | + | chr1_1:47452858-47452877 | None:intergenic | 25.0% |
| !! | TTAAGCTCTGTTTTGTATAT+AGG | - | chr1_1:47452880-47452899 | Msa0024770:intron | 25.0% |
| ! | AAAACATTATTGCTTAAGGA+GGG | + | chr1_1:47452998-47453017 | None:intergenic | 25.0% |
| ! | GGTTGAAAGTTAAATATTTG+GGG | + | chr1_1:47453094-47453113 | None:intergenic | 25.0% |
| ! | GGCTAGTAAATACAATATAT+TGG | - | chr1_1:47453365-47453384 | Msa0024770:intron | 25.0% |
| !! | AATATATTTAGTCCCTGTTT+TGG | - | chr1_1:47453398-47453417 | Msa0024770:intron | 25.0% |
| ! | TCAAATAAGTCAATCCAAAT+TGG | - | chr1_1:47453644-47453663 | Msa0024770:intron | 25.0% |
| ! | TTATAGTATCCATTGCAAAA+TGG | - | chr1_1:47453679-47453698 | Msa0024770:intron | 25.0% |
| ! | ATAAATATGACACATGTGTA+AGG | - | chr1_1:47453801-47453820 | Msa0024770:intron | 25.0% |
| ! | ATACTAGTATCTTAAAATGG+AGG | - | chr1_1:47453899-47453918 | Msa0024770:intron | 25.0% |
| ! | TATCTTCGGAATAAGAAAAT+TGG | + | chr1_1:47454136-47454155 | None:intergenic | 25.0% |
| ! | AGTATTGTTAAATAAGGACA+AGG | + | chr1_1:47454207-47454226 | None:intergenic | 25.0% |
| AAGAAGAAGAAGAAGATTGA+AGG | + | chr1_1:47449924-47449943 | None:intergenic | 30.0% | |
| !!! | TACCCTTTTTTCATGTTTTC+AGG | - | chr1_1:47450034-47450053 | Msa0024770:intron | 30.0% |
| TACTTTACTTGATGCATCTT+AGG | - | chr1_1:47450127-47450146 | Msa0024770:intron | 30.0% | |
| GCAAAACCTTATTCAAATGA+GGG | + | chr1_1:47450195-47450214 | None:intergenic | 30.0% | |
| AGCAAAACCTTATTCAAATG+AGG | + | chr1_1:47450196-47450215 | None:intergenic | 30.0% | |
| TCTCTTTGCTTTATCTTTAG+AGG | - | chr1_1:47450520-47450539 | Msa0024770:intron | 30.0% | |
| CTCTTTGCTTTATCTTTAGA+GGG | - | chr1_1:47450521-47450540 | Msa0024770:intron | 30.0% | |
| ! | ATTTGTTGCAGAAGTCTATT+GGG | - | chr1_1:47450620-47450639 | Msa0024770:intron | 30.0% |
| !!! | TTATTGTTTTTGTTCCTACC+AGG | - | chr1_1:47450761-47450780 | Msa0024770:intron | 30.0% |
| !!! | TATTGTTTTTGTTCCTACCA+GGG | - | chr1_1:47450762-47450781 | Msa0024770:intron | 30.0% |
| TGAAGGTTTCAACTTTCAAT+TGG | - | chr1_1:47450994-47451013 | Msa0024770:intron | 30.0% | |
| TTTGATCATTTATAGCAGGA+TGG | + | chr1_1:47451488-47451507 | None:intergenic | 30.0% | |
| TCAGTTTGATCATTTATAGC+AGG | + | chr1_1:47451492-47451511 | None:intergenic | 30.0% | |
| !! | CAGTATTGAATTCTAGAACT+AGG | - | chr1_1:47451546-47451565 | Msa0024770:intron | 30.0% |
| TATTTGCCATAGTAAAATGG+AGG | - | chr1_1:47451650-47451669 | Msa0024770:intron | 30.0% | |
| ! | GTACTCAATTTTCCTTAACT+TGG | - | chr1_1:47451701-47451720 | Msa0024770:intron | 30.0% |
| GTGAAACAAAATTGGAATTG+AGG | + | chr1_1:47451862-47451881 | None:intergenic | 30.0% | |
| ATTTAAAAGAGTTTGGTCCA+TGG | + | chr1_1:47452084-47452103 | None:intergenic | 30.0% | |
| ! | TTTTATGAGAAAACACCTGA+TGG | + | chr1_1:47452161-47452180 | None:intergenic | 30.0% |
| TTATATAATAGCTCAGGCTA+TGG | + | chr1_1:47452405-47452424 | None:intergenic | 30.0% | |
| AATATGCTGCATATACATGT+AGG | - | chr1_1:47452576-47452595 | Msa0024770:intron | 30.0% | |
| ! | ATTATTTCTTTGTTACCTCC+CGG | + | chr1_1:47452629-47452648 | None:intergenic | 30.0% |
| AAGATCAGAAACAACATTAC+TGG | - | chr1_1:47452652-47452671 | Msa0024770:intron | 30.0% | |
| ATTAGCATAGTGGTTTATGT+CGG | - | chr1_1:47452716-47452735 | Msa0024770:intron | 30.0% | |
| ACATAGAAAATCAGGATGTT+TGG | + | chr1_1:47452850-47452869 | None:intergenic | 30.0% | |
| CAAAACATTATTGCTTAAGG+AGG | + | chr1_1:47452999-47453018 | None:intergenic | 30.0% | |
| AGTGTGTAACAGACTAAAAA+GGG | + | chr1_1:47453292-47453311 | None:intergenic | 30.0% | |
| TAAATACAATATATTGGCCG+TGG | - | chr1_1:47453371-47453390 | Msa0024770:intron | 30.0% | |
| AAATACAATATATTGGCCGT+GGG | - | chr1_1:47453372-47453391 | Msa0024770:intron | 30.0% | |
| AATATGTCAAGTCTTGGATT+TGG | - | chr1_1:47453760-47453779 | Msa0024770:intron | 30.0% | |
| AGATACTAGTATCATTGCAT+TGG | + | chr1_1:47453891-47453910 | None:intergenic | 30.0% | |
| ! | TAATGCTTTTAAATCTGTCC+AGG | - | chr1_1:47454011-47454030 | Msa0024770:intron | 30.0% |
| ! | AATGCTTTTAAATCTGTCCA+GGG | - | chr1_1:47454012-47454031 | Msa0024770:intron | 30.0% |
| CGGAATAAGAAAATTGGTAT+CGG | + | chr1_1:47454130-47454149 | None:intergenic | 30.0% | |
| GCAGGTATTTACATTATCTT+CGG | + | chr1_1:47454150-47454169 | None:intergenic | 30.0% | |
| CAATCAAGAAATCATATAGC+AGG | + | chr1_1:47454168-47454187 | None:intergenic | 30.0% | |
| ATTCTTGTCGAATTCGTTTA+AGG | - | chr1_1:47454237-47454256 | Msa0024770:CDS | 30.0% | |
| AATGTAGAGAGAATAAAGAG+AGG | + | chr1_1:47454278-47454297 | None:intergenic | 30.0% | |
| !! | ACATTGATTTCTGGAGATGT+TGG | + | chr1_1:47449836-47449855 | None:intergenic | 35.0% |
| !! | AGAGAAGCAACATTGATTTC+TGG | + | chr1_1:47449845-47449864 | None:intergenic | 35.0% |
| TGTAAATGGGTACCTGAAAA+GGG | + | chr1_1:47449964-47449983 | None:intergenic | 35.0% | |
| ATGTAAATGGGTACCTGAAA+AGG | + | chr1_1:47449965-47449984 | None:intergenic | 35.0% | |
| ! | CTTCCTCTTTGGAAAGAAAA+GGG | - | chr1_1:47450078-47450097 | Msa0024770:intron | 35.0% |
| TTTCCCACTTATTCACCTAA+GGG | + | chr1_1:47450270-47450289 | None:intergenic | 35.0% | |
| ATTTCCCACTTATTCACCTA+AGG | + | chr1_1:47450271-47450290 | None:intergenic | 35.0% | |
| ACATCACATTCTATATGCAG+GGG | + | chr1_1:47450312-47450331 | None:intergenic | 35.0% | |
| GACATCACATTCTATATGCA+GGG | + | chr1_1:47450313-47450332 | None:intergenic | 35.0% | |
| AGAATTTGCCACAAACGATT+AGG | + | chr1_1:47450503-47450522 | None:intergenic | 35.0% | |
| ATAGACTTCTGCAACAAATG+TGG | + | chr1_1:47450619-47450638 | None:intergenic | 35.0% | |
| ! | CATTTGTTGCAGAAGTCTAT+TGG | - | chr1_1:47450619-47450638 | Msa0024770:intron | 35.0% |
| TAATGGTTATGTGTACGCAT+TGG | - | chr1_1:47450888-47450907 | Msa0024770:intron | 35.0% | |
| AGATAAGACTTCACTGTTAC+TGG | - | chr1_1:47450930-47450949 | Msa0024770:intron | 35.0% | |
| !!! | TGTTTTAAAAAAGGGCAACC+CGG | - | chr1_1:47451103-47451122 | Msa0024770:intron | 35.0% |
| CTTGTGTAAAAAACAGGGTA+AGG | + | chr1_1:47453191-47453210 | None:intergenic | 35.0% | |
| !!! | TACCCTGTTTTTTACACAAG+AGG | - | chr1_1:47451195-47451214 | Msa0024770:intron | 35.0% |
| AGCCTCTTGTGTAAAAAACA+GGG | + | chr1_1:47453186-47453205 | None:intergenic | 35.0% | |
| ! | CAACTTCCTCCATTTTACTA+TGG | + | chr1_1:47451659-47451678 | None:intergenic | 35.0% |
| GAAAATTGAGTACCTAACGT+AGG | + | chr1_1:47451694-47451713 | None:intergenic | 35.0% | |
| ! | TCATCTTTTCTTCAATGGTG+AGG | + | chr1_1:47452228-47452247 | None:intergenic | 35.0% |
| CTTCAACTTAGGTTATCTTC+CGG | - | chr1_1:47452607-47452626 | Msa0024770:intron | 35.0% | |
| TTCAACTTAGGTTATCTTCC+GGG | - | chr1_1:47452608-47452627 | Msa0024770:intron | 35.0% | |
| AGAGAATTCTAATACCAGGA+GGG | - | chr1_1:47452690-47452709 | Msa0024770:intron | 35.0% | |
| TTAGCATAGTGGTTTATGTC+GGG | - | chr1_1:47452717-47452736 | Msa0024770:intron | 35.0% | |
| ! | GGCACATAAAGTATCAAACT+TGG | + | chr1_1:47453054-47453073 | None:intergenic | 35.0% |
| AGCCTCTTGTGTAAAAAACA+GGG | - | chr1_1:47453186-47453205 | Msa0024770:CDS | 35.0% | |
| !!! | TACCCTGTTTTTTACACAAG+AGG | + | chr1_1:47451195-47451214 | None:intergenic | 35.0% |
| CTTGTGTAAAAAACAGGGTA+AGG | - | chr1_1:47453191-47453210 | Msa0024770:CDS | 35.0% | |
| CAGTGTGTAACAGACTAAAA+AGG | + | chr1_1:47453293-47453312 | None:intergenic | 35.0% | |
| !! | CTTTTTAGTCTGTTACACAC+TGG | - | chr1_1:47453291-47453310 | Msa0024770:intron | 35.0% |
| GACTAAATATATTGCTCCCA+CGG | + | chr1_1:47453391-47453410 | None:intergenic | 35.0% | |
| TTAGGCTGTTTACCAAAACA+GGG | + | chr1_1:47453413-47453432 | None:intergenic | 35.0% | |
| ATTAGGCTGTTTACCAAAAC+AGG | + | chr1_1:47453414-47453433 | None:intergenic | 35.0% | |
| GTAGTGTTATAGAGAGCTTA+TGG | - | chr1_1:47453553-47453572 | Msa0024770:intron | 35.0% | |
| GAGCCATCATGTTTAAACAA+CGG | - | chr1_1:47453709-47453728 | Msa0024770:intron | 35.0% | |
| AGCCATCATGTTTAAACAAC+GGG | - | chr1_1:47453710-47453729 | Msa0024770:intron | 35.0% | |
| ! | GTCTAGAATATGTCAAGTCT+TGG | - | chr1_1:47453754-47453773 | Msa0024770:intron | 35.0% |
| ! | AAGTCTTGGATTTGGAACAT+CGG | - | chr1_1:47453768-47453787 | Msa0024770:intron | 35.0% |
| TTGGCTTCAATTAACATGCT+TGG | - | chr1_1:47453959-47453978 | Msa0024770:CDS | 35.0% | |
| GCAAGCTACAAATGCTAAAT+CGG | - | chr1_1:47454095-47454114 | Msa0024770:CDS | 35.0% | |
| ! | TGATTTCTGGAGATGTTGGT+TGG | + | chr1_1:47449832-47449851 | None:intergenic | 40.0% |
| TGAAAAGGGAGAATCGTCTT+TGG | + | chr1_1:47449950-47449969 | None:intergenic | 40.0% | |
| ! | AAAGACGATTCTCCCTTTTC+AGG | - | chr1_1:47449949-47449968 | Msa0024770:CDS | 40.0% |
| ! | GTTTTTGTGAGCTTCCTCTT+TGG | - | chr1_1:47450067-47450086 | Msa0024770:intron | 40.0% |
| ! | GCTTCCTCTTTGGAAAGAAA+AGG | - | chr1_1:47450077-47450096 | Msa0024770:intron | 40.0% |
| ! | TTGCCCTTTTCTTTCCAAAG+AGG | + | chr1_1:47450084-47450103 | None:intergenic | 40.0% |
| !! | TGTTTTTGTCAGTAGGCTAG+TGG | - | chr1_1:47450233-47450252 | Msa0024770:intron | 40.0% |
| TTCACCCTTAGGTGAATAAG+TGG | - | chr1_1:47450263-47450282 | Msa0024770:intron | 40.0% | |
| TCACCCTTAGGTGAATAAGT+GGG | - | chr1_1:47450264-47450283 | Msa0024770:intron | 40.0% | |
| AGGTGAATAAGTGGGAAATC+CGG | - | chr1_1:47450272-47450291 | Msa0024770:intron | 40.0% | |
| GGACATCACATTCTATATGC+AGG | + | chr1_1:47450314-47450333 | None:intergenic | 40.0% | |
| TACGAAGTCCTAATCGTTTG+TGG | - | chr1_1:47450492-47450511 | Msa0024770:intron | 40.0% | |
| ! | TTTTTGTTCCTACCAGGGTA+TGG | - | chr1_1:47450767-47450786 | Msa0024770:intron | 40.0% |
| TGGAAACATGTTGTCCAGAA+AGG | - | chr1_1:47450787-47450806 | Msa0024770:intron | 40.0% | |
| CAATGACTGTATCTCCTTTC+TGG | + | chr1_1:47450804-47450823 | None:intergenic | 40.0% | |
| AACCAAATTGCGCAATGCTA+AGG | + | chr1_1:47450854-47450873 | None:intergenic | 40.0% | |
| GTTGCTGATGAGTCACATAA+TGG | - | chr1_1:47450871-47450890 | Msa0024770:intron | 40.0% | |
| AGAATCGCTTAGTTCCAATG+AGG | - | chr1_1:47450954-47450973 | Msa0024770:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr1_1:47451169-47451188 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAAAC+AGG | + | chr1_1:47453185-47453204 | None:intergenic | 40.0% | |
| ! | GTTGTTGTTATGTGACCGAA+AGG | + | chr1_1:47451246-47451265 | None:intergenic | 40.0% |
| TATAAAGTGAGGGGTAACCT+TGG | + | chr1_1:47451282-47451301 | None:intergenic | 40.0% | |
| CAGAAAATATCACCGCAAAC+CGG | - | chr1_1:47451380-47451399 | Msa0024770:CDS | 40.0% | |
| TCAATATACAACGGCTTGTC+CGG | + | chr1_1:47451402-47451421 | None:intergenic | 40.0% | |
| TTCAAAGCAATGCCTACGTT+AGG | - | chr1_1:47451679-47451698 | Msa0024770:intron | 40.0% | |
| CAGAGAGATGATCCAAGTTA+AGG | + | chr1_1:47451716-47451735 | None:intergenic | 40.0% | |
| GCACGCAAGTGAAACAAAAT+TGG | + | chr1_1:47451870-47451889 | None:intergenic | 40.0% | |
| TGTAAATAGTCACATGGGCA+TGG | - | chr1_1:47451915-47451934 | Msa0024770:intron | 40.0% | |
| TTGAATTTGAGAAGCCTCCA+TGG | - | chr1_1:47452064-47452083 | Msa0024770:intron | 40.0% | |
| TAAAAGAGTTTGGTCCATGG+AGG | + | chr1_1:47452081-47452100 | None:intergenic | 40.0% | |
| AATATGGATCTCACTCCATC+AGG | - | chr1_1:47452143-47452162 | Msa0024770:intron | 40.0% | |
| ! | TTTTCTTCAATGGTGAGGCT+TGG | + | chr1_1:47452223-47452242 | None:intergenic | 40.0% |
| ! | CGGAAGATAACCTAAGTTGA+AGG | + | chr1_1:47452609-47452628 | None:intergenic | 40.0% |
| GCAGAGAGAATTCTAATACC+AGG | - | chr1_1:47452686-47452705 | Msa0024770:intron | 40.0% | |
| GAGAGAATTCTAATACCAGG+AGG | - | chr1_1:47452689-47452708 | Msa0024770:intron | 40.0% | |
| AGAAATATTACCGTCCACCA+GGG | + | chr1_1:47452745-47452764 | None:intergenic | 40.0% | |
| AAGAAATATTACCGTCCACC+AGG | + | chr1_1:47452746-47452765 | None:intergenic | 40.0% | |
| CACTAGTGTGTTAACAGACT+AGG | + | chr1_1:47453115-47453134 | None:intergenic | 40.0% | |
| TGAAGTTGTTGTCATGTGAC+TGG | - | chr1_1:47453133-47453152 | Msa0024770:CDS | 40.0% | |
| CAGCCTCTTGTGTAAAAAAC+AGG | - | chr1_1:47453185-47453204 | Msa0024770:CDS | 40.0% | |
| AGATGGTTTGAGAGAGCTTA+TGG | + | chr1_1:47453597-47453616 | None:intergenic | 40.0% | |
| ! | AGTCAATCCAAATTGGCTCT+TGG | - | chr1_1:47453651-47453670 | Msa0024770:intron | 40.0% |
| TCCATTGCAAAATGGCTGAT+TGG | - | chr1_1:47453687-47453706 | Msa0024770:intron | 40.0% | |
| !! | TCCAATCAGCCATTTTGCAA+TGG | + | chr1_1:47453691-47453710 | None:intergenic | 40.0% |
| GCCATCATGTTTAAACAACG+GGG | - | chr1_1:47453711-47453730 | Msa0024770:intron | 40.0% | |
| ACCCCGTTGTTTAAACATGA+TGG | + | chr1_1:47453715-47453734 | None:intergenic | 40.0% | |
| TGTATCTCTCACTACAGAAG+AGG | - | chr1_1:47453845-47453864 | Msa0024770:intron | 40.0% | |
| CAGAAGAGGCAAATCAGATT+TGG | - | chr1_1:47453859-47453878 | Msa0024770:intron | 40.0% | |
| CTAGACTGTCTGTTGAGAAT+TGG | - | chr1_1:47454065-47454084 | Msa0024770:intron | 40.0% | |
| ! | AAAATTGGTATCGGAGCACA+TGG | + | chr1_1:47454121-47454140 | None:intergenic | 40.0% |
| TTGGAGAAGGAAGAAGGAAG+AGG | + | chr1_1:47449813-47449832 | None:intergenic | 45.0% | |
| ! | TGTTGGTTGGAGAAGGAAGA+AGG | + | chr1_1:47449819-47449838 | None:intergenic | 45.0% |
| GTGGCTAGAAATTCACCCTT+AGG | - | chr1_1:47450252-47450271 | Msa0024770:intron | 45.0% | |
| GGTGAATAAGTGGGAAATCC+GGG | - | chr1_1:47450273-47450292 | Msa0024770:intron | 45.0% | |
| GTGAATAAGTGGGAAATCCG+GGG | - | chr1_1:47450274-47450293 | Msa0024770:intron | 45.0% | |
| !! | GAGCATAGCTCAAGTTGGTA+GGG | + | chr1_1:47450335-47450354 | None:intergenic | 45.0% |
| !! | TGAGCATAGCTCAAGTTGGT+AGG | + | chr1_1:47450336-47450355 | None:intergenic | 45.0% |
| TGCAGAAGTCTATTGGGCAA+TGG | - | chr1_1:47450626-47450645 | Msa0024770:intron | 45.0% | |
| GCAGAAGTCTATTGGGCAAT+GGG | - | chr1_1:47450627-47450646 | Msa0024770:intron | 45.0% | |
| ACATGTTTCCATACCCTGGT+AGG | + | chr1_1:47450778-47450797 | None:intergenic | 45.0% | |
| GACAACATGTTTCCATACCC+TGG | + | chr1_1:47450782-47450801 | None:intergenic | 45.0% | |
| ACAGTCATTGATGCGACATG+TGG | - | chr1_1:47450814-47450833 | Msa0024770:intron | 45.0% | |
| ATTGATGCGACATGTGGCAA+CGG | - | chr1_1:47450820-47450839 | Msa0024770:intron | 45.0% | |
| CACCTTAGCATTGCGCAATT+TGG | - | chr1_1:47450849-47450868 | Msa0024770:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr1_1:47451170-47451189 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr1_1:47451173-47451192 | None:intergenic | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr1_1:47451206-47451225 | Msa0024770:intron | 45.0% |
| TTATGTGACCGAAAGGTCAC+GGG | + | chr1_1:47451239-47451258 | None:intergenic | 45.0% | |
| GTTATGTGACCGAAAGGTCA+CGG | + | chr1_1:47451240-47451259 | None:intergenic | 45.0% | |
| AATAGTCACATGGGCATGGT+CGG | - | chr1_1:47451919-47451938 | Msa0024770:intron | 45.0% | |
| GCTTGACATAGCGTTCCAAA+TGG | + | chr1_1:47451997-47452016 | None:intergenic | 45.0% | |
| TGGAACGCTATGTCAAGCAA+TGG | - | chr1_1:47451999-47452018 | Msa0024770:intron | 45.0% | |
| GTTAGCTGTGCTTGTAACCA+TGG | - | chr1_1:47452452-47452471 | Msa0024770:intron | 45.0% | |
| !! | AGGCTTGTTGCCTTCAACTT+AGG | - | chr1_1:47452596-47452615 | Msa0024770:intron | 45.0% |
| AACTTAGGTTATCTTCCGGG+AGG | - | chr1_1:47452611-47452630 | Msa0024770:intron | 45.0% | |
| ACTATGCTAATAAGCCCTCC+TGG | + | chr1_1:47452707-47452726 | None:intergenic | 45.0% | |
| AGGAGGGCTTATTAGCATAG+TGG | - | chr1_1:47452706-47452725 | Msa0024770:intron | 45.0% | |
| !!! | GGGGCTTTTTTGCTATGTGA+AGG | + | chr1_1:47453075-47453094 | None:intergenic | 45.0% |
| GTTGTTGTCATGTGACTGGA+AGG | - | chr1_1:47453137-47453156 | Msa0024770:CDS | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1_1:47451206-47451225 | None:intergenic | 45.0% |
| CGTACAATACCCCAAATGGT+GGG | - | chr1_1:47453217-47453236 | Msa0024770:CDS | 45.0% | |
| CAGACTAAAAAGGGCAATCC+CGG | + | chr1_1:47453283-47453302 | None:intergenic | 45.0% | |
| ATGCATAAGCACTAGCGAGA+TGG | + | chr1_1:47453614-47453633 | None:intergenic | 45.0% | |
| AAACACGCCAAGAGCCAATT+TGG | + | chr1_1:47453661-47453680 | None:intergenic | 45.0% | |
| AAATCTGTCCAGGGAAGAGT+TGG | - | chr1_1:47454021-47454040 | Msa0024770:intron | 45.0% | |
| !!! | TTATAAATATGTTTTAAAAA+AGG | - | chr1_1:47451094-47451113 | Msa0024770:intron | 5.0% |
| !!! | TATAAATATGTTTTAAAAAA+GGG | - | chr1_1:47451095-47451114 | Msa0024770:intron | 5.0% |
| !!! | TTTTTTTTCTTTTTTTTTTT+TGG | - | chr1_1:47452771-47452790 | Msa0024770:intron | 5.0% |
| !!! | TTTTTTTCTTTTTTTTTTTT+GGG | - | chr1_1:47452772-47452791 | Msa0024770:intron | 5.0% |
| ! | CTGGAGATGTTGGTTGGAGA+AGG | + | chr1_1:47449826-47449845 | None:intergenic | 50.0% |
| ACATTCTATATGCAGGGGCC+GGG | + | chr1_1:47450307-47450326 | None:intergenic | 50.0% | |
| CACATTCTATATGCAGGGGC+CGG | + | chr1_1:47450308-47450327 | None:intergenic | 50.0% | |
| TGCGTGAGCATAGCTCAAGT+TGG | + | chr1_1:47450340-47450359 | None:intergenic | 50.0% | |
| CGCTTAGTTCCAATGAGGTG+AGG | - | chr1_1:47450959-47450978 | Msa0024770:intron | 50.0% | |
| CTCAGTAGTCCTCACCTCAT+TGG | + | chr1_1:47450971-47450990 | None:intergenic | 50.0% | |
| CAATGAGGTGAGGACTACTG+AGG | - | chr1_1:47450969-47450988 | Msa0024770:intron | 50.0% | |
| TGAGGACTACTGAGGAGTGA+AGG | - | chr1_1:47450977-47450996 | Msa0024770:intron | 50.0% | |
| GACTTGAACCCGTGACCTTT+CGG | - | chr1_1:47451228-47451247 | Msa0024770:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr1_1:47451262-47451281 | Msa0024770:intron | 50.0% | |
| ATAGTCACATGGGCATGGTC+GGG | - | chr1_1:47451920-47451939 | Msa0024770:intron | 50.0% | |
| ! | CGGGCTTTAGTGGATGATTG+TGG | - | chr1_1:47451939-47451958 | Msa0024770:intron | 50.0% |
| GTCATGTGACTGGAAGGTCA+CGG | - | chr1_1:47453143-47453162 | Msa0024770:CDS | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | - | chr1_1:47453144-47453163 | Msa0024770:CDS | 50.0% | |
| GCTGCGTACAATACCCCAAA+TGG | - | chr1_1:47453213-47453232 | Msa0024770:CDS | 50.0% | |
| GCGTACAATACCCCAAATGG+TGG | - | chr1_1:47453216-47453235 | Msa0024770:CDS | 50.0% | |
| AACAACCTCCAACTCTTCCC+TGG | + | chr1_1:47454032-47454051 | None:intergenic | 50.0% | |
| CATTCTATATGCAGGGGCCG+GGG | + | chr1_1:47450306-47450325 | None:intergenic | 55.0% | |
| TGAGCTATGCTCACGCAGAC+TGG | - | chr1_1:47450343-47450362 | Msa0024770:intron | 55.0% | |
| ACTGAAGCTCCCGCATATGC+AGG | - | chr1_1:47451129-47451148 | Msa0024770:intron | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | - | chr1_1:47451130-47451149 | Msa0024770:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr1_1:47453156-47453175 | None:intergenic | 55.0% | |
| ! | ACAACGGCTTGTCCGGTTTG+CGG | + | chr1_1:47451395-47451414 | None:intergenic | 55.0% |
| ! | CACAAGAGGCTGTTTCCAGG+AGG | + | chr1_1:47451209-47451228 | None:intergenic | 55.0% |
| AGGAAGGGGTCCCACCATTT+GGG | + | chr1_1:47453230-47453249 | None:intergenic | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | + | chr1_1:47453256-47453275 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | chr1_1:47453257-47453276 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr1_1:47453261-47453280 | Msa0024770:intron | 55.0% |
| TCTGTCCAGGGAAGAGTTGG+AGG | - | chr1_1:47454024-47454043 | Msa0024770:intron | 55.0% | |
| GAAATCCGGGGTTCGAACCC+CGG | - | chr1_1:47450286-47450305 | Msa0024770:intron | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | + | chr1_1:47451125-47451144 | None:intergenic | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | + | chr1_1:47451141-47451160 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | + | chr1_1:47451142-47451161 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | - | chr1_1:47451141-47451160 | Msa0024770:intron | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | - | chr1_1:47451142-47451161 | Msa0024770:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr1_1:47453229-47453248 | None:intergenic | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr1_1:47451273-47451292 | None:intergenic | 60.0% | |
| ! | TGGGCATGGTCGGGCTTTAG+TGG | - | chr1_1:47451929-47451948 | Msa0024770:intron | 60.0% |
| GTGGTTTATGTCGGGCACCC+TGG | - | chr1_1:47452725-47452744 | Msa0024770:intron | 60.0% | |
| GTTTATGTCGGGCACCCTGG+TGG | - | chr1_1:47452728-47452747 | Msa0024770:intron | 60.0% | |
| GTCACGGGTTCAAGTCCTCC+TGG | - | chr1_1:47453159-47453178 | Msa0024770:CDS | 60.0% | |
| GGAAGGGGTCCCACCATTTG+GGG | + | chr1_1:47451157-47451176 | None:intergenic | 60.0% | |
| CAGGAAGGGGTCCCACCATT+TGG | + | chr1_1:47453231-47453250 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+TGG | - | chr1_1:47453229-47453248 | Msa0024770:CDS | 60.0% |
| CATACGCAGGGTCCAGGAAG+GGG | + | chr1_1:47453244-47453263 | None:intergenic | 60.0% | |
| GCATACGCAGGGTCCAGGAA+GGG | + | chr1_1:47453245-47453264 | None:intergenic | 60.0% | |
| CTTCCTGGACCCTGCGTATG+CGG | - | chr1_1:47453244-47453263 | Msa0024770:intron | 60.0% | |
| TTCCTGGACCCTGCGTATGC+GGG | - | chr1_1:47453245-47453264 | Msa0024770:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr1_1:47453262-47453281 | Msa0024770:intron | 60.0% |
| TGCGGGAGCTTCAGTGCACC+GGG | + | chr1_1:47451124-47451143 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | - | chr1_1:47451135-47451154 | Msa0024770:intron | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | - | chr1_1:47451136-47451155 | Msa0024770:intron | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | - | chr1_1:47451140-47451159 | Msa0024770:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr1_1:47451155-47451174 | Msa0024770:intron | 65.0% | |
| ATGTCGGGCACCCTGGTGGA+CGG | - | chr1_1:47452732-47452751 | Msa0024770:intron | 65.0% | |
| CGCATACGCAGGGTCCAGGA+AGG | + | chr1_1:47453246-47453265 | None:intergenic | 65.0% | |
| CTCCCGCATACGCAGGGTCC+AGG | + | chr1_1:47453250-47453269 | None:intergenic | 70.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | + | chr1_1:47450294-47450313 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 47449738 | 47454302 | 47449738 | ID=Msa0024770;Name=Msa0024770 |
| chr1_1 | mRNA | 47449738 | 47454302 | 47449738 | ID=Msa0024770-mRNA-1;Parent=Msa0024770;Name=Msa0024770-mRNA-1;_AED=0.12;_eAED=0.12;_QI=22|1|1|1|1|1|6|146|273 |
| chr1_1 | exon | 47449738 | 47450007 | 47449738 | ID=Msa0024770-mRNA-1:exon:13521;Parent=Msa0024770-mRNA-1 |
| chr1_1 | exon | 47451287 | 47451442 | 47451287 | ID=Msa0024770-mRNA-1:exon:13520;Parent=Msa0024770-mRNA-1 |
| chr1_1 | exon | 47452340 | 47452413 | 47452340 | ID=Msa0024770-mRNA-1:exon:13519;Parent=Msa0024770-mRNA-1 |
| chr1_1 | exon | 47453065 | 47453257 | 47453065 | ID=Msa0024770-mRNA-1:exon:13518;Parent=Msa0024770-mRNA-1 |
| chr1_1 | exon | 47453921 | 47453984 | 47453921 | ID=Msa0024770-mRNA-1:exon:13517;Parent=Msa0024770-mRNA-1 |
| chr1_1 | exon | 47454070 | 47454302 | 47454070 | ID=Msa0024770-mRNA-1:exon:13516;Parent=Msa0024770-mRNA-1 |
| chr1_1 | five_prime_UTR | 47454281 | 47454302 | 47454281 | ID=Msa0024770-mRNA-1:five_prime_utr;Parent=Msa0024770-mRNA-1 |
| chr1_1 | CDS | 47454070 | 47454280 | 47454070 | ID=Msa0024770-mRNA-1:cds;Parent=Msa0024770-mRNA-1 |
| chr1_1 | CDS | 47453921 | 47453984 | 47453921 | ID=Msa0024770-mRNA-1:cds;Parent=Msa0024770-mRNA-1 |
| chr1_1 | CDS | 47453065 | 47453257 | 47453065 | ID=Msa0024770-mRNA-1:cds;Parent=Msa0024770-mRNA-1 |
| chr1_1 | CDS | 47452340 | 47452413 | 47452340 | ID=Msa0024770-mRNA-1:cds;Parent=Msa0024770-mRNA-1 |
| chr1_1 | CDS | 47451287 | 47451442 | 47451287 | ID=Msa0024770-mRNA-1:cds;Parent=Msa0024770-mRNA-1 |
| chr1_1 | CDS | 47449884 | 47450007 | 47449884 | ID=Msa0024770-mRNA-1:cds;Parent=Msa0024770-mRNA-1 |
| chr1_1 | three_prime_UTR | 47449738 | 47449883 | 47449738 | ID=Msa0024770-mRNA-1:three_prime_utr;Parent=Msa0024770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
