AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0340440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340440 MtrunA17_Chr2g0330111 97.345 339 9 0 32 370 1 339 0.0 683
Msa0340440 MtrunA17_Chr8g0347681 56.690 284 122 1 78 361 2 284 1.53e-104 309
Msa0340440 MtrunA17_Chr8g0389841 29.618 314 213 3 49 361 14 320 3.10e-40 145
Msa0340440 MtrunA17_Chr8g0380761 32.932 249 164 2 78 324 15 262 1.35e-36 134
Msa0340440 MtrunA17_Chr2g0292541 31.699 306 184 7 79 362 42 344 1.58e-31 122
Msa0340440 MtrunA17_Chr6g0478521 22.945 292 222 2 74 362 322 613 1.08e-19 91.3
Msa0340440 MtrunA17_Chr6g0478521 21.831 284 217 4 79 358 7 289 8.90e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340440 AT1G17650.2 83.803 284 46 0 79 362 10 293 1.24e-175 490
Msa0340440 AT1G17650.1 83.803 284 46 0 79 362 69 352 3.05e-174 489
Msa0340440 AT3G25530.1 58.451 284 118 0 78 361 2 285 3.09e-113 332
Msa0340440 AT3G25530.2 56.690 284 112 1 78 361 2 274 6.10e-109 320
Msa0340440 AT3G25530.3 57.843 204 86 0 78 281 2 205 6.94e-77 236
Msa0340440 AT4G29120.1 32.534 292 193 3 73 361 32 322 3.56e-40 145
Msa0340440 AT4G20930.1 33.227 313 177 9 79 369 40 342 1.91e-37 138
Msa0340440 AT4G20930.2 32.117 274 154 9 118 369 7 270 1.83e-28 112
Msa0340440 AT1G71170.1 27.338 278 197 2 84 361 21 293 1.07e-26 108
Msa0340440 AT1G71180.1 27.468 233 168 1 84 316 42 273 1.05e-21 94.7
Msa0340440 AT1G18270.1 25.694 288 211 2 78 362 323 610 1.96e-21 96.7
Msa0340440 AT1G18270.1 22.433 263 200 3 79 338 5 266 4.46e-13 71.2
Msa0340440 AT1G18270.2 25.694 288 211 2 78 362 324 611 1.96e-21 96.7
Msa0340440 AT1G18270.2 22.727 264 199 4 79 338 5 267 1.17e-11 67.0
Msa0340440 AT1G18270.3 25.694 288 211 2 78 362 323 610 2.04e-21 96.7
Msa0340440 AT1G18270.3 22.433 263 200 3 79 338 5 266 4.05e-13 71.6
Msa0340440 AT1G18270.4 25.694 288 211 2 78 362 323 610 2.22e-21 96.7
Msa0340440 AT1G18270.4 22.433 263 200 3 79 338 5 266 4.62e-13 71.2

Find 108 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGTATAAATTCTACATTT+TGG 0.162814 2_4:-61811492 None:intergenic
TAACTACAGGCTCCAGTTTC+AGG 0.167120 2_4:+61810263 Msa0340440:intron
GACACTTCTAAATTGATTAA+TGG 0.205921 2_4:+61810063 Msa0340440:CDS
TGTGTATATTCTACACATTC+TGG 0.230033 2_4:-61811521 None:intergenic
AATACCTCCACTAGTACTTT+TGG 0.295746 2_4:-61810887 None:intergenic
ACACTTCTAAATTGATTAAT+GGG 0.318329 2_4:+61810064 Msa0340440:CDS
TGAAACGGTTGCTCCGTTCT+TGG 0.330518 2_4:+61810526 Msa0340440:CDS
TGCTCCGTTCTTGGACATCA+TGG 0.351778 2_4:+61810535 Msa0340440:CDS
TGAGTATCAAGAAGTATTCT+TGG 0.353706 2_4:-61811860 None:intergenic
AGAAGTATTCTTGGAGTATC+AGG 0.360504 2_4:-61811851 None:intergenic
AACTATAATACCTTGTCCTT+GGG 0.364004 2_4:-61808164 None:intergenic
TACCTTGGCAATGTTGGAAA+TGG 0.364360 2_4:+61810671 Msa0340440:CDS
TCGGAGATGGTCAAGTCATT+TGG 0.374499 2_4:+61811641 Msa0340440:three_prime_UTR
TGCTTCTGAGTGAGAAAGTT+GGG 0.374837 2_4:+61810858 Msa0340440:CDS
CGAGTACATTGGAGCACTAA+TGG 0.376150 2_4:-61811064 None:intergenic
TTGATCTCACTGTTTGGAAT+AGG 0.380244 2_4:+61809000 Msa0340440:CDS
TCCATTGGTTTATAGTATGA+TGG 0.398814 2_4:+61810817 Msa0340440:intron
CGCTGCAATCGGAATAGGTT+GGG 0.407650 2_4:-61811273 None:intergenic
TTGGCTCCCAAGCTGATTAG+AGG 0.408502 2_4:-61809041 None:intergenic
TGATGAGATTTAGAGCCATT+GGG 0.412792 2_4:-61808300 None:intergenic
AAACTATAATACCTTGTCCT+TGG 0.424492 2_4:-61808165 None:intergenic
TTGATGAGATTTAGAGCCAT+TGG 0.428876 2_4:-61808301 None:intergenic
AAAAGCTCTCTGATAGGAAA+AGG 0.431800 2_4:-61811618 None:intergenic
ATCAATTGTCCATCTTCTGC+TGG 0.438341 2_4:-61810296 None:intergenic
TCGTTAGCAGCCGCTGCAAT+CGG 0.444539 2_4:-61811284 None:intergenic
GCTCTAAATCTCATCAAAGC+TGG 0.445265 2_4:+61808307 Msa0340440:CDS
GCAGCCGCTGCAATCGGAAT+AGG 0.449872 2_4:-61811278 None:intergenic
GTGTATATTCTACACATTCT+GGG 0.450455 2_4:-61811520 None:intergenic
GCTCCGTTCTTGGACATCAT+GGG 0.452907 2_4:+61810536 Msa0340440:CDS
CACAGGAAGGATGAGTAGTA+TGG 0.456314 2_4:+61808033 Msa0340440:CDS
TAGAGGATCACATTTGCTCT+TGG 0.467382 2_4:-61809024 None:intergenic
GATATGTAATGAGAAGTAAC+CGG 0.467696 2_4:-61811746 None:intergenic
TAGAATATACACAGAGAGAA+TGG 0.471575 2_4:+61811531 Msa0340440:three_prime_UTR
GTTGAAGTGATGAAGGGAAA+AGG 0.475851 2_4:-61808092 None:intergenic
GGAAAGCATGGAGTTGCTAA+TGG 0.475897 2_4:+61809355 Msa0340440:CDS
GTAGAGTTGATCTCACTGTT+TGG 0.477694 2_4:+61808994 Msa0340440:intron
AATGGAATCGGTCCAGGAAA+AGG 0.477706 2_4:+61809373 Msa0340440:CDS
CTGTCTCATAAGAGCCTCAC+TGG 0.481414 2_4:-61811400 None:intergenic
CAGAAGCAAACCTTCAGAAA+AGG 0.488958 2_4:-61810843 None:intergenic
AATATACACACAGCACTTTG+AGG 0.490865 2_4:-61809251 None:intergenic
CATGGAGTTGCTAATGGAAT+CGG 0.492082 2_4:+61809361 Msa0340440:CDS
TGGATAATTTGACTGTATCA+TGG 0.493372 2_4:-61811100 None:intergenic
CAAGATGCTGCTACTTCCTC+GGG 0.493976 2_4:-61809200 None:intergenic
CGACAGAAATCTTTATGAAA+CGG 0.495971 2_4:+61810511 Msa0340440:CDS
ACAAGATGCTGCTACTTCCT+CGG 0.502118 2_4:-61809201 None:intergenic
GCGGAGAGTTGAAGTGATGA+AGG 0.505923 2_4:-61808099 None:intergenic
TGTGATCCTCTAATCAGCTT+GGG 0.506829 2_4:+61809035 Msa0340440:CDS
ACAGGATCTAAGACTTGCCC+TGG 0.506928 2_4:+61811232 Msa0340440:intron
AAAGCTCTCTGATAGGAAAA+GGG 0.514451 2_4:-61811617 None:intergenic
CAATTGATATTTCTTACAGC+AGG 0.514852 2_4:+61810311 Msa0340440:CDS
TTGCTTCTGAGTGAGAAAGT+TGG 0.515382 2_4:+61810857 Msa0340440:CDS
GTTGCTAATGGAATCGGTCC+AGG 0.515390 2_4:+61809367 Msa0340440:CDS
CTCTAAATCTCATCAAAGCT+GGG 0.519329 2_4:+61808308 Msa0340440:CDS
GTCTTGATGAAAACTTTGCC+TGG 0.527918 2_4:+61805874 Msa0340440:CDS
GCTTGTTGTCAATATGATCA+TGG 0.529260 2_4:+61810706 Msa0340440:CDS
AGGGATTGACACCCCTCCAC+GGG 0.539501 2_4:+61808246 Msa0340440:intron
GCTGCTACTTCCTCGGGAGA+AGG 0.542330 2_4:-61809194 None:intergenic
CGGTATCATGGGCACCCCAA+TGG 0.546961 2_4:+61808285 Msa0340440:CDS
CAGGGATTGACACCCCTCCA+CGG 0.548362 2_4:+61808245 Msa0340440:intron
ATCTCATGCGCGAACAGAGA+AGG 0.550951 2_4:+61805829 None:intergenic
ATGTGATCCTCTAATCAGCT+TGG 0.553137 2_4:+61809034 Msa0340440:CDS
AATGGGCACATAAAATCCAC+TGG 0.554074 2_4:+61810081 Msa0340440:CDS
ATGGAATCGGTCCAGGAAAA+GGG 0.557465 2_4:+61809374 Msa0340440:CDS
TAATTTGACTGTATCATGGA+TGG 0.558193 2_4:-61811096 None:intergenic
CTCCGTTCTTGGACATCATG+GGG 0.560146 2_4:+61810537 Msa0340440:CDS
GGGCCTTTCATCGAGTACAT+TGG 0.561131 2_4:-61811075 None:intergenic
ATATGTAATGAGAAGTAACC+GGG 0.564502 2_4:-61811745 None:intergenic
ATCAGAACATTGACACTCCC+CGG 0.566198 2_4:+61811727 Msa0340440:three_prime_UTR
CCGCTGCAATCGGAATAGGT+TGG 0.566277 2_4:-61811274 None:intergenic
CAGGATCTAAGACTTGCCCT+GGG 0.573167 2_4:+61811233 Msa0340440:intron
CTTGTTGTCAATATGATCAT+GGG 0.573368 2_4:+61810707 Msa0340440:CDS
AAACAGACTCTGCTAACCCC+AGG 0.575361 2_4:-61811250 None:intergenic
GCTCCAATGTACTCGATGAA+AGG 0.578127 2_4:+61811072 Msa0340440:CDS
ACTTTGAGGATCAGCAAGCA+TGG 0.578940 2_4:-61809237 None:intergenic
CTCCATTTCCAACATTGCCA+AGG 0.580583 2_4:-61810673 None:intergenic
TTGTCAATATGATCATGGGC+AGG 0.583553 2_4:+61810711 Msa0340440:CDS
ACTATAATACCTTGTCCTTG+GGG 0.592451 2_4:-61808163 None:intergenic
AATTTGACTGTATCATGGAT+GGG 0.592762 2_4:-61811095 None:intergenic
GATGTTGCTTGTGGAAAGCA+TGG 0.592782 2_4:+61809343 Msa0340440:CDS
ATTGACACCCCTCCACGGGT+TGG 0.594650 2_4:+61808250 Msa0340440:CDS
AAGCAGAAACATTGGAAATG+TGG 0.595633 2_4:-61808132 None:intergenic
GATGAGATTTAGAGCCATTG+GGG 0.598554 2_4:-61808299 None:intergenic
GCTAGATCCAAAAGTACTAG+TGG 0.600091 2_4:+61810880 Msa0340440:CDS
TCCCCTAAAACATCAGCAGA+AGG 0.603322 2_4:+61811131 Msa0340440:CDS
TATTCAGTGGACAAAGACAT+AGG 0.609052 2_4:+61805852 Msa0340440:CDS
CGGAGAGTTGAAGTGATGAA+GGG 0.614817 2_4:-61808098 None:intergenic
ATACTTCTTGATACTCAGAC+AGG 0.617172 2_4:+61811866 Msa0340440:three_prime_UTR
TTGTTGAGAAGCAGAAACAT+TGG 0.623094 2_4:-61808140 None:intergenic
CCAACCTATTCCGATTGCAG+CGG 0.624141 2_4:+61811274 Msa0340440:CDS
TATCAGGTGGATGTTGCTTG+TGG 0.626476 2_4:+61809334 Msa0340440:intron
TCTCAACAACCCCAAGGACA+AGG 0.628813 2_4:+61808154 Msa0340440:CDS
TTCCCCATGATGTCCAAGAA+CGG 0.640738 2_4:-61810539 None:intergenic
TCTGCTTCTCAACAACCCCA+AGG 0.643196 2_4:+61808148 Msa0340440:CDS
AGATCCAAAAGTACTAGTGG+AGG 0.648546 2_4:+61810883 Msa0340440:CDS
CAGATATAAACCTTCTCCCG+AGG 0.649506 2_4:+61809184 Msa0340440:intron
GGATGTTTCAACTGTTGACG+TGG 0.653133 2_4:+61810041 Msa0340440:CDS
AACAGACTCTGCTAACCCCA+GGG 0.658481 2_4:-61811249 None:intergenic
ACAGGAAGAAGAACACAGGA+AGG 0.660164 2_4:+61808020 Msa0340440:intron
CGAACAGAGAAGGTATTCAG+TGG 0.665720 2_4:+61805839 Msa0340440:CDS
TTGGGGTGCCCATGATACCG+AGG 0.671988 2_4:-61808282 None:intergenic
ATCACACGGCTATAGTGATG+AGG 0.672104 2_4:+61811325 Msa0340440:CDS
TATAAAGTTGCAAAATCACA+CGG 0.677424 2_4:+61811311 Msa0340440:CDS
TCTTACAGGAAGAAGAACAC+AGG 0.687389 2_4:+61808016 Msa0340440:intron
AAATTTATGGATACACTGTG+TGG 0.689842 2_4:+61811808 Msa0340440:three_prime_UTR
AGGATCTAAGACTTGCCCTG+GGG 0.728262 2_4:+61811234 Msa0340440:intron
GAAATGTGGCGAGAGAAGCG+CGG 0.740497 2_4:-61808118 None:intergenic
TATGTAATGAGAAGTAACCG+GGG 0.766256 2_4:-61811744 None:intergenic
CAGCACTCAGAAAACCAGTG+AGG 0.776863 2_4:+61811386 Msa0340440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATTATTATTAAAATA+TGG - chr2_4:61807931-61807950 None:intergenic 0.0%
!! AATAATAATAATAATATATT+TGG + chr2_4:61807943-61807962 Msa0340440:intron 0.0%
!! TAATAAAAAATAAAAAATAT+TGG - chr2_4:61811789-61811808 None:intergenic 0.0%
!!! TTTATTTTTTATTAAATTTA+TGG + chr2_4:61811795-61811814 Msa0340440:three_prime_UTR 0.0%
!! TAATACTAATTTAATTAACA+AGG - chr2_4:61806138-61806157 None:intergenic 10.0%
!! AAAAAAAACAATATATATAG+GGG + chr2_4:61806199-61806218 Msa0340440:intron 10.0%
!!! TCAATAATTTTTTTTTTTTG+GGG - chr2_4:61806368-61806387 None:intergenic 10.0%
!!! CTCAATAATTTTTTTTTTTT+GGG - chr2_4:61806369-61806388 None:intergenic 10.0%
!!! TCTCAATAATTTTTTTTTTT+TGG - chr2_4:61806370-61806389 None:intergenic 10.0%
!!! TCTAATTAATTTTAAATAGA+AGG - chr2_4:61806676-61806695 None:intergenic 10.0%
!! TAATTAGAATATAAACAAAA+TGG + chr2_4:61806688-61806707 Msa0340440:intron 10.0%
!!! ATTGAATTATTTAAATTTTC+GGG + chr2_4:61808658-61808677 Msa0340440:intron 10.0%
!!! TTGAATTATTTAAATTTTTC+GGG + chr2_4:61808772-61808791 Msa0340440:intron 10.0%
!!! TATTGATTTTTTAAATTTTG+GGG + chr2_4:61808887-61808906 Msa0340440:intron 10.0%
!! GAAAATATATATAGATATTA+AGG - chr2_4:61810013-61810032 None:intergenic 10.0%
!! TACTAATAACTAATTAAATT+TGG + chr2_4:61810352-61810371 Msa0340440:intron 10.0%
!! AAATAACTATTCTAATATAT+GGG + chr2_4:61810999-61811018 Msa0340440:intron 10.0%
!! GTTAATTAAATTAGTATTAG+TGG + chr2_4:61806139-61806158 Msa0340440:intron 15.0%
!! AAATGAGTAAATAATAAAGT+GGG - chr2_4:61806277-61806296 None:intergenic 15.0%
!! AAAATGAGTAAATAATAAAG+TGG - chr2_4:61806278-61806297 None:intergenic 15.0%
!! AAAAAAATTATTGAGATTGT+AGG + chr2_4:61806374-61806393 Msa0340440:intron 15.0%
!! TACCTCTAATAATATATATT+TGG + chr2_4:61806415-61806434 Msa0340440:intron 15.0%
!!! GTAATAAATACAAACTTTTA+AGG - chr2_4:61806574-61806593 None:intergenic 15.0%
!!! CTTTTTTGTTTCTTTTTTTA+AGG + chr2_4:61806622-61806641 Msa0340440:intron 15.0%
!!! TGTTTTAGTAAATTATAAGT+GGG + chr2_4:61806711-61806730 Msa0340440:intron 15.0%
!!! TTGATTTTATCTTGAAATAT+AGG - chr2_4:61806990-61807009 None:intergenic 15.0%
!!! TTTTATATTGGGTTAAATTA+AGG - chr2_4:61807244-61807263 None:intergenic 15.0%
!!! TATATTGATTTTTTTTCTGT+TGG + chr2_4:61807386-61807405 Msa0340440:intron 15.0%
!! ATATCAAATCATCATAATAA+AGG - chr2_4:61807636-61807655 None:intergenic 15.0%
!! TGTCAAAAGAAAAAAAAAAT+TGG - chr2_4:61807854-61807873 None:intergenic 15.0%
!!! TTTTCAATGGTTAATTTTAA+TGG - chr2_4:61808607-61808626 None:intergenic 15.0%
!!! GATTTTATATAATTTTGTGT+CGG - chr2_4:61808847-61808866 None:intergenic 15.0%
!!! TGTATAGTTTTTAAATCTTA+TGG + chr2_4:61809276-61809295 Msa0340440:intron 15.0%
!!! TTTTCAATAATAAGATGATA+AGG - chr2_4:61809537-61809556 None:intergenic 15.0%
!!! TAATCATTTGTTTTAGAAAT+AGG + chr2_4:61809916-61809935 Msa0340440:intron 15.0%
!!! GATCATATATTCTTTTTTAA+TGG - chr2_4:61810584-61810603 None:intergenic 15.0%
!! GAAATAACTATTCTAATATA+TGG + chr2_4:61810998-61811017 Msa0340440:intron 15.0%
!! AATAACTATTCTAATATATG+GGG + chr2_4:61811000-61811019 Msa0340440:intron 15.0%
!!! AAGTATAAATTCTACATTTT+GGG - chr2_4:61811494-61811513 None:intergenic 15.0%
!!! AAAAAATATTGGATACTTTT+GGG - chr2_4:61811778-61811797 None:intergenic 15.0%
!!! TAAAAAATATTGGATACTTT+TGG - chr2_4:61811779-61811798 None:intergenic 15.0%
!!! ACTTGCACATTAATATTTTT+AGG - chr2_4:61806242-61806261 None:intergenic 20.0%
!!! TTTTATACCCACTTATATTA+AGG + chr2_4:61806295-61806314 Msa0340440:intron 20.0%
!! AGCCAAATATATATTATTAG+AGG - chr2_4:61806420-61806439 None:intergenic 20.0%
!!! ACTTTTAAGGAAACAATATT+TGG - chr2_4:61806561-61806580 None:intergenic 20.0%
!!! GTGTTTTAGTAAATTATAAG+TGG + chr2_4:61806710-61806729 Msa0340440:intron 20.0%
!! AATCAATATAGTAAGCTATA+AGG - chr2_4:61807376-61807395 None:intergenic 20.0%
!!! TTTAAATGTAAAGAAGTGTA+AGG + chr2_4:61807526-61807545 Msa0340440:intron 20.0%
!! ATGCAAAGATAATATTATGT+AGG - chr2_4:61807573-61807592 None:intergenic 20.0%
!! GAAATGAATTTGAATTTGAA+GGG - chr2_4:61808203-61808222 None:intergenic 20.0%
!! TGAAATGAATTTGAATTTGA+AGG - chr2_4:61808204-61808223 None:intergenic 20.0%
!! ATGATGTATCACATAAAATT+AGG + chr2_4:61808336-61808355 Msa0340440:intron 20.0%
!!! AATTATTTAAATTTTCGGGT+GGG + chr2_4:61808662-61808681 Msa0340440:intron 20.0%
!!! GCTTTTATACAATTTTATGT+CGG - chr2_4:61808733-61808752 None:intergenic 20.0%
!!! AATTATTTAAATTTTTCGGG+TGG + chr2_4:61808775-61808794 Msa0340440:intron 20.0%
!!! ATTATTTAAATTTTTCGGGT+GGG + chr2_4:61808776-61808795 Msa0340440:intron 20.0%
!!! TTTTTTTCAAGTGTAAGTAA+TGG - chr2_4:61809083-61809102 None:intergenic 20.0%
!!! TATTTGTTTTATTCCATATC+AGG + chr2_4:61809318-61809337 Msa0340440:intron 20.0%
!!! TATATATATTTTCAGATACG+TGG + chr2_4:61810020-61810039 Msa0340440:intron 20.0%
!! ACACTTCTAAATTGATTAAT+GGG + chr2_4:61810064-61810083 Msa0340440:CDS 20.0%
!! ATAACTAATTAAATTTGGTC+TGG + chr2_4:61810357-61810376 Msa0340440:intron 20.0%
!! TAACTAATTAAATTTGGTCT+GGG + chr2_4:61810358-61810377 Msa0340440:intron 20.0%
!!! CATATATTCTTTTTTAATGG+AGG - chr2_4:61810581-61810600 None:intergenic 20.0%
!! TATGAATTAATTGTTTGCTT+TGG - chr2_4:61810613-61810632 None:intergenic 20.0%
!!! CAAGTATAAATTCTACATTT+TGG - chr2_4:61811495-61811514 None:intergenic 20.0%
!!! AAGAAAAATCAGTTTTCATT+AGG - chr2_4:61811579-61811598 None:intergenic 20.0%
! TATAGATAGAAATGCTTAAC+TGG - chr2_4:61805911-61805930 None:intergenic 25.0%
!!! GCACATTAATATTTTTAGGT+AGG - chr2_4:61806238-61806257 None:intergenic 25.0%
!!! AAGCTAACAATATTTTTACG+AGG - chr2_4:61806484-61806503 None:intergenic 25.0%
!!! TTTTTTCATAAACACTTGCT+TGG - chr2_4:61806934-61806953 None:intergenic 25.0%
! TATATTGGGTTAAATTAAGG+TGG - chr2_4:61807241-61807260 None:intergenic 25.0%
!!! TCAACAGTCACTTTTATATT+GGG - chr2_4:61807255-61807274 None:intergenic 25.0%
!!! TTCAACAGTCACTTTTATAT+TGG - chr2_4:61807256-61807275 None:intergenic 25.0%
! TGACTGTTGAAAAAGAATAT+TGG + chr2_4:61807265-61807284 Msa0340440:intron 25.0%
! AAGCTATAAGGAAAAAACAA+AGG - chr2_4:61807364-61807383 None:intergenic 25.0%
!!! TAATAAATTTTTAGGGTGAG+AGG + chr2_4:61807710-61807729 Msa0340440:intron 25.0%
!!! GTCTTCTATATTTTAGATTG+AGG - chr2_4:61807742-61807761 None:intergenic 25.0%
! AAATGTGAACTCCAAAAATT+TGG - chr2_4:61807886-61807905 None:intergenic 25.0%
!! ATTCAATGATTTCTGTTTTC+AGG + chr2_4:61808226-61808245 Msa0340440:intron 25.0%
!! TTCAATGATTTCTGTTTTCA+GGG + chr2_4:61808227-61808246 Msa0340440:intron 25.0%
! ATGACCAAAACATACATATT+TGG - chr2_4:61808456-61808475 None:intergenic 25.0%
!!! GGCTTTAAACAATTTTTCAA+TGG - chr2_4:61808620-61808639 None:intergenic 25.0%
!! AATTATAGGTCTATTTTACG+AGG - chr2_4:61808641-61808660 None:intergenic 25.0%
!!! GAATTATTTAAATTTTCGGG+TGG + chr2_4:61808661-61808680 Msa0340440:intron 25.0%
!!! TACAATTTTATGTCGGTTTT+AGG - chr2_4:61808726-61808745 None:intergenic 25.0%
!!! TATAATTTTGTGTCGGTTTT+AGG - chr2_4:61808840-61808859 None:intergenic 25.0%
!!! TGATTTTTTAAATTTTGGGG+TGG + chr2_4:61808890-61808909 Msa0340440:intron 25.0%
!!! GATTTTTTAAATTTTGGGGT+GGG + chr2_4:61808891-61808910 Msa0340440:intron 25.0%
!!! GAAAATTTTGAGAACGAATT+AGG - chr2_4:61808969-61808988 None:intergenic 25.0%
!!! AGTTTTTTCATAAGCTATTC+TGG - chr2_4:61809864-61809883 None:intergenic 25.0%
! TTGGATAAACAGCTTAATTA+CGG - chr2_4:61809984-61810003 None:intergenic 25.0%
! GACACTTCTAAATTGATTAA+TGG + chr2_4:61810063-61810082 Msa0340440:CDS 25.0%
! TATTTCTTGCATGATTTAGT+TGG + chr2_4:61810191-61810210 Msa0340440:intron 25.0%
!! AAACAGGAGACAAATTTTAA+AGG - chr2_4:61810738-61810757 None:intergenic 25.0%
! AAAATAAAACCTATAGTGCA+TGG + chr2_4:61810929-61810948 Msa0340440:intron 25.0%
! TATAAAGTTGCAAAATCACA+CGG + chr2_4:61811311-61811330 Msa0340440:CDS 25.0%
!!! AAATTCTACATTTTGGGAAT+TGG - chr2_4:61811488-61811507 None:intergenic 25.0%
!!! TGAAAACTGATTTTTCTTGT+TGG + chr2_4:61811581-61811600 Msa0340440:three_prime_UTR 25.0%
GCATTTCTATCTATAGCAAA+CGG + chr2_4:61805916-61805935 Msa0340440:intron 30.0%
TGACAATTATTCACAAGTGT+CGG + chr2_4:61806077-61806096 Msa0340440:intron 30.0%
GTAAATAATAAAGTGGGTGT+AGG - chr2_4:61806271-61806290 None:intergenic 30.0%
TTGCACCTAAAATCAAACTT+GGG - chr2_4:61806445-61806464 None:intergenic 30.0%
ATTGCACCTAAAATCAAACT+TGG - chr2_4:61806446-61806465 None:intergenic 30.0%
!! CTAACAATATTTTTACGAGG+TGG - chr2_4:61806481-61806500 None:intergenic 30.0%
AAGTGAGTGTAAATTAGTGA+AGG - chr2_4:61806530-61806549 None:intergenic 30.0%
AAAAGACAATGACATGCTTA+AGG - chr2_4:61806607-61806626 None:intergenic 30.0%
!! TATTTTGAAAGTGTGAGTAC+TGG + chr2_4:61807039-61807058 Msa0340440:intron 30.0%
ATAATACTTAGGTGACAGTA+TGG + chr2_4:61807062-61807081 Msa0340440:intron 30.0%
TTAAATTAAGGTGGTACTCA+CGG - chr2_4:61807232-61807251 None:intergenic 30.0%
GAATGAGATAGTCAAAACAA+AGG - chr2_4:61807323-61807342 None:intergenic 30.0%
! ATACATCTCTTTGAGTTTGA+AGG - chr2_4:61807764-61807783 None:intergenic 30.0%
! CAAAGACTAGACCAAATTTT+TGG + chr2_4:61807872-61807891 Msa0340440:intron 30.0%
AACTATAATACCTTGTCCTT+GGG - chr2_4:61808167-61808186 None:intergenic 30.0%
AAACTATAATACCTTGTCCT+TGG - chr2_4:61808168-61808187 None:intergenic 30.0%
CCAAAACATACATATTTGGT+TGG - chr2_4:61808452-61808471 None:intergenic 30.0%
! CCAACCAAATATGTATGTTT+TGG + chr2_4:61808449-61808468 Msa0340440:intron 30.0%
! GATATAGTCTTTGTTTGTCA+AGG - chr2_4:61808511-61808530 None:intergenic 30.0%
!!! TTTATGTCGGTTTTAGGTTT+CGG - chr2_4:61808720-61808739 None:intergenic 30.0%
TGGAAAGATGAATTCATACT+TGG - chr2_4:61809063-61809082 None:intergenic 30.0%
!! TTGTTTTATTCCATATCAGG+TGG + chr2_4:61809321-61809340 Msa0340440:intron 30.0%
GGAACATATTGAAGATACTT+TGG - chr2_4:61809422-61809441 None:intergenic 30.0%
CCTAATGTCTATCAAATTGT+AGG - chr2_4:61809443-61809462 None:intergenic 30.0%
CCTACAATTTGATAGACATT+AGG + chr2_4:61809440-61809459 Msa0340440:intron 30.0%
AGATGGAAGAATTGTTGTAT+TGG - chr2_4:61809497-61809516 None:intergenic 30.0%
CAAAAAGAAACGATGATATG+TGG - chr2_4:61809653-61809672 None:intergenic 30.0%
TTTGAACGTAATGACATGAT+AGG + chr2_4:61809669-61809688 Msa0340440:intron 30.0%
!! GTGTTTCGTATATGTTTTGA+TGG + chr2_4:61809708-61809727 Msa0340440:intron 30.0%
!!! GCACAATTTATTTTAGCTCA+CGG + chr2_4:61809833-61809852 Msa0340440:intron 30.0%
!!! CACAATTTATTTTAGCTCAC+GGG + chr2_4:61809834-61809853 Msa0340440:intron 30.0%
TGGATAAACAGCTTAATTAC+GGG - chr2_4:61809983-61810002 None:intergenic 30.0%
ATTAAGCTGTTTATCCAAAC+AGG + chr2_4:61809986-61810005 Msa0340440:intron 30.0%
TTAAGCTGTTTATCCAAACA+GGG + chr2_4:61809987-61810006 Msa0340440:intron 30.0%
ATGTTCATGGAGAATAGATA+GGG - chr2_4:61810142-61810161 None:intergenic 30.0%
CAATTGATATTTCTTACAGC+AGG + chr2_4:61810311-61810330 Msa0340440:CDS 30.0%
AATTAAATTTGGTCTGGGAA+AGG + chr2_4:61810363-61810382 Msa0340440:intron 30.0%
ATCTTAGTTTCTGTAGCTAT+TGG - chr2_4:61810463-61810482 None:intergenic 30.0%
CGACAGAAATCTTTATGAAA+CGG + chr2_4:61810511-61810530 Msa0340440:CDS 30.0%
!!! ATTCTTTTTTAATGGAGGAC+AGG - chr2_4:61810576-61810595 None:intergenic 30.0%
!! TAATTGTTTGCTTTGGAAGA+AGG - chr2_4:61810606-61810625 None:intergenic 30.0%
! ATGCAGTCTAAATTTTACCT+TGG + chr2_4:61810656-61810675 Msa0340440:intron 30.0%
! AAATTTTACCTTGGCAATGT+TGG + chr2_4:61810665-61810684 Msa0340440:CDS 30.0%
! CTTGTTGTCAATATGATCAT+GGG + chr2_4:61810707-61810726 Msa0340440:CDS 30.0%
TCAAATAGAAGCAAAGAAAC+AGG - chr2_4:61810754-61810773 None:intergenic 30.0%
TCAACATAATCATCAACACA+AGG - chr2_4:61810777-61810796 None:intergenic 30.0%
! TTTCTTTCTCTCTTTTCCAT+TGG + chr2_4:61810802-61810821 Msa0340440:intron 30.0%
GCAAAATTTCCATTTCGTAA+GGG - chr2_4:61811026-61811045 None:intergenic 30.0%
TGCAAAATTTCCATTTCGTA+AGG - chr2_4:61811027-61811046 None:intergenic 30.0%
! TTACGAAATGGAAATTTTGC+AGG + chr2_4:61811026-61811045 Msa0340440:intron 30.0%
! ATTTTGCAGGTAATTTCACA+AGG + chr2_4:61811039-61811058 Msa0340440:intron 30.0%
AATTTGACTGTATCATGGAT+GGG - chr2_4:61811098-61811117 None:intergenic 30.0%
TAATTTGACTGTATCATGGA+TGG - chr2_4:61811099-61811118 None:intergenic 30.0%
TGGATAATTTGACTGTATCA+TGG - chr2_4:61811103-61811122 None:intergenic 30.0%
GTGTATATTCTACACATTCT+GGG - chr2_4:61811523-61811542 None:intergenic 30.0%
TGTGTATATTCTACACATTC+TGG - chr2_4:61811524-61811543 None:intergenic 30.0%
TAGAATATACACAGAGAGAA+TGG + chr2_4:61811531-61811550 Msa0340440:three_prime_UTR 30.0%
ATATGTAATGAGAAGTAACC+GGG - chr2_4:61811748-61811767 None:intergenic 30.0%
GATATGTAATGAGAAGTAAC+CGG - chr2_4:61811749-61811768 None:intergenic 30.0%
!! ATTGGATACTTTTGGGAATT+GGG - chr2_4:61811771-61811790 None:intergenic 30.0%
!! TATTGGATACTTTTGGGAAT+TGG - chr2_4:61811772-61811791 None:intergenic 30.0%
AAATTTATGGATACACTGTG+TGG + chr2_4:61811808-61811827 Msa0340440:three_prime_UTR 30.0%
!! TGAGTATCAAGAAGTATTCT+TGG - chr2_4:61811863-61811882 None:intergenic 30.0%
TATTCAGTGGACAAAGACAT+AGG + chr2_4:61805852-61805871 Msa0340440:CDS 35.0%
GAAATGCTTAACTGGATAAG+AGG - chr2_4:61805903-61805922 None:intergenic 35.0%
!!! AGCAAACGGTGCTATTTTAT+AGG + chr2_4:61805930-61805949 Msa0340440:intron 35.0%
GACAATTATTCACAAGTGTC+GGG + chr2_4:61806078-61806097 Msa0340440:intron 35.0%
GCTTGCACCTTAATATAAGT+GGG - chr2_4:61806305-61806324 None:intergenic 35.0%
TGCTTGCACCTTAATATAAG+TGG - chr2_4:61806306-61806325 None:intergenic 35.0%
ACTTATATTAAGGTGCAAGC+AGG + chr2_4:61806305-61806324 Msa0340440:intron 35.0%
CTTATATTAAGGTGCAAGCA+GGG + chr2_4:61806306-61806325 Msa0340440:intron 35.0%
TTATATTAAGGTGCAAGCAG+GGG + chr2_4:61806307-61806326 Msa0340440:intron 35.0%
TGCACCTAAAATCAAACTTG+GGG - chr2_4:61806444-61806463 None:intergenic 35.0%
AAAACACTAAGGTGCAAGTT+AGG - chr2_4:61806745-61806764 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG + chr2_4:61806746-61806765 Msa0340440:intron 35.0%
CTTTCATGGAGAATGTTAAC+CGG + chr2_4:61806878-61806897 Msa0340440:intron 35.0%
TCATAAACACTTGCTTGGTT+TGG - chr2_4:61806929-61806948 None:intergenic 35.0%
!! GTGAGTACTGGATAATACTT+AGG + chr2_4:61807051-61807070 Msa0340440:intron 35.0%
! TGATGATGACATTGTGACAT+TGG - chr2_4:61807185-61807204 None:intergenic 35.0%
GTATCATTTAGGTGACATTG+TGG - chr2_4:61807209-61807228 None:intergenic 35.0%
TAAATTAAGGTGGTACTCAC+GGG - chr2_4:61807231-61807250 None:intergenic 35.0%
!!! AAATTTTTAGGGTGAGAGGA+TGG + chr2_4:61807714-61807733 Msa0340440:intron 35.0%
!! TTGGTCTTTGCTTTTCCTTT+TGG + chr2_4:61807962-61807981 Msa0340440:intron 35.0%
AGATAGATGACACTACCAAA+AGG - chr2_4:61807980-61807999 None:intergenic 35.0%
CTATAGTCTATCCATCTTAC+AGG + chr2_4:61808002-61808021 Msa0340440:intron 35.0%
AAGCAGAAACATTGGAAATG+TGG - chr2_4:61808135-61808154 None:intergenic 35.0%
TTGTTGAGAAGCAGAAACAT+TGG - chr2_4:61808143-61808162 None:intergenic 35.0%
ACTATAATACCTTGTCCTTG+GGG - chr2_4:61808166-61808185 None:intergenic 35.0%
! TGATGAGATTTAGAGCCATT+GGG - chr2_4:61808303-61808322 None:intergenic 35.0%
! TTGATGAGATTTAGAGCCAT+TGG - chr2_4:61808304-61808323 None:intergenic 35.0%
CTCTAAATCTCATCAAAGCT+GGG + chr2_4:61808308-61808327 Msa0340440:CDS 35.0%
GTCTTCTATCTAGTAACATG+TGG + chr2_4:61808544-61808563 Msa0340440:intron 35.0%
GGAGCTAGAAAAAAAAGCTA+GGG + chr2_4:61808577-61808596 Msa0340440:intron 35.0%
CTAGAAAAAAAAGCTAGGGT+GGG + chr2_4:61808581-61808600 Msa0340440:intron 35.0%
TACATCACTTTGCAGGAATT+TGG + chr2_4:61808689-61808708 Msa0340440:intron 35.0%
TACATCACTTTGTGGGAATT+TGG + chr2_4:61808803-61808822 Msa0340440:intron 35.0%
!!! TTTGTGTCGGTTTTAGGTTT+CGG - chr2_4:61808834-61808853 None:intergenic 35.0%
! TTGATCTCACTGTTTGGAAT+AGG + chr2_4:61809000-61809019 Msa0340440:CDS 35.0%
AATATACACACAGCACTTTG+AGG - chr2_4:61809254-61809273 None:intergenic 35.0%
! TAAATATAGCACCCTTTTCC+TGG - chr2_4:61809388-61809407 None:intergenic 35.0%
CATATTGAGAGAGCTAAAGA+TGG - chr2_4:61809514-61809533 None:intergenic 35.0%
GTCTTTACTCTTGACAACTA+TGG - chr2_4:61809594-61809613 None:intergenic 35.0%
!!! GTATATGTTTTGATGGTCCT+GGG + chr2_4:61809715-61809734 Msa0340440:intron 35.0%
!! CATAAGCTAGCTGTTTTCAT+AGG - chr2_4:61809807-61809826 None:intergenic 35.0%
! CTATGAAAACAGCTAGCTTA+TGG + chr2_4:61809805-61809824 Msa0340440:intron 35.0%
ATAGATATTAAGGCCCTGTT+TGG - chr2_4:61810003-61810022 None:intergenic 35.0%
!! ATCCACTGGAGCATTATTTT+TGG + chr2_4:61810095-61810114 Msa0340440:CDS 35.0%
CATGTTCATGGAGAATAGAT+AGG - chr2_4:61810143-61810162 None:intergenic 35.0%
! ATGCAGGGTACTCTTTAATT+TGG + chr2_4:61810160-61810179 Msa0340440:intron 35.0%
TCTTGCATGATTTAGTTGGA+TGG + chr2_4:61810195-61810214 Msa0340440:intron 35.0%
TACAAGCAGAGAATTCAACT+AGG + chr2_4:61810406-61810425 Msa0340440:intron 35.0%
!! GCTTGTTGTCAATATGATCA+TGG + chr2_4:61810706-61810725 Msa0340440:CDS 35.0%
! AATACCTCCACTAGTACTTT+TGG - chr2_4:61810890-61810909 None:intergenic 35.0%
ATAAACACACCATGCACTAT+AGG - chr2_4:61810941-61810960 None:intergenic 35.0%
TGTGAGAGCAAAACTAATAC+TGG - chr2_4:61811198-61811217 None:intergenic 35.0%
!!! TATTAGTTTTGCTCTCACAC+AGG + chr2_4:61811199-61811218 Msa0340440:intron 35.0%
!!! GTTTTCTGAGTGCTGAAATT+TGG - chr2_4:61811381-61811400 None:intergenic 35.0%
AAAGCTCTCTGATAGGAAAA+GGG - chr2_4:61811620-61811639 None:intergenic 35.0%
AAAAGCTCTCTGATAGGAAA+AGG - chr2_4:61811621-61811640 None:intergenic 35.0%
! TTCCTATCAGAGAGCTTTTT+CGG + chr2_4:61811622-61811641 Msa0340440:three_prime_UTR 35.0%
TATGTAATGAGAAGTAACCG+GGG - chr2_4:61811747-61811766 None:intergenic 35.0%
!! AGAAGTATTCTTGGAGTATC+AGG - chr2_4:61811854-61811873 None:intergenic 35.0%
ATACTTCTTGATACTCAGAC+AGG + chr2_4:61811866-61811885 Msa0340440:three_prime_UTR 35.0%
! CAGACAGGCAATTTTTCTTA+TGG + chr2_4:61811881-61811900 Msa0340440:three_prime_UTR 35.0%
GTCTTGATGAAAACTTTGCC+TGG + chr2_4:61805874-61805893 Msa0340440:CDS 40.0%
TAACTGGATAAGAGGATACC+AGG - chr2_4:61805895-61805914 None:intergenic 40.0%
GCGAATGCTTGTACAATCAA+GGG + chr2_4:61806329-61806348 Msa0340440:intron 40.0%
CGAATGCTTGTACAATCAAG+GGG + chr2_4:61806330-61806349 Msa0340440:intron 40.0%
!! GCTACCCCAAGTTTGATTTT+AGG + chr2_4:61806437-61806456 Msa0340440:intron 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG + chr2_4:61806749-61806768 Msa0340440:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG + chr2_4:61806750-61806769 Msa0340440:intron 40.0%
ACACCCACCTAAAAACACTA+AGG - chr2_4:61806756-61806775 None:intergenic 40.0%
! CCATGAAAGAATGAGTGTTG+AGG - chr2_4:61806867-61806886 None:intergenic 40.0%
CCTCAACACTCATTCTTTCA+TGG + chr2_4:61806864-61806883 Msa0340440:intron 40.0%
TACTTAGGTGACAGTATGGT+TGG + chr2_4:61807066-61807085 Msa0340440:intron 40.0%
TTTGTACACTTGTGACACTG+TGG - chr2_4:61807105-61807124 None:intergenic 40.0%
GAAAGACACTTGTGACATTG+TGG + chr2_4:61807155-61807174 Msa0340440:intron 40.0%
TCTTGTAAGCTCAACACGAT+TGG - chr2_4:61807599-61807618 None:intergenic 40.0%
GTGTTCTTCTTCCTGTAAGA+TGG - chr2_4:61808016-61808035 None:intergenic 40.0%
TCTTACAGGAAGAAGAACAC+AGG + chr2_4:61808016-61808035 Msa0340440:intron 40.0%
GTTGAAGTGATGAAGGGAAA+AGG - chr2_4:61808095-61808114 None:intergenic 40.0%
! GATGAGATTTAGAGCCATTG+GGG - chr2_4:61808302-61808321 None:intergenic 40.0%
! GCTCTAAATCTCATCAAAGC+TGG + chr2_4:61808307-61808326 Msa0340440:CDS 40.0%
CGGAGCTAGAAAAAAAAGCT+AGG + chr2_4:61808576-61808595 Msa0340440:intron 40.0%
GCTAGAAAAAAAAGCTAGGG+TGG + chr2_4:61808580-61808599 Msa0340440:intron 40.0%
ATTCCTGCAAAGTGATGTAG+TGG - chr2_4:61808688-61808707 None:intergenic 40.0%
ATTCCCACAAAGTGATGTAG+TGG - chr2_4:61808802-61808821 None:intergenic 40.0%
AGTGAGATCAACTCTACAAC+AGG - chr2_4:61808991-61809010 None:intergenic 40.0%
! GTAGAGTTGATCTCACTGTT+TGG + chr2_4:61808994-61809013 Msa0340440:intron 40.0%
TAGAGGATCACATTTGCTCT+TGG - chr2_4:61809027-61809046 None:intergenic 40.0%
ATGTGATCCTCTAATCAGCT+TGG + chr2_4:61809034-61809053 Msa0340440:CDS 40.0%
TGTGATCCTCTAATCAGCTT+GGG + chr2_4:61809035-61809054 Msa0340440:CDS 40.0%
CATGGAGTTGCTAATGGAAT+CGG + chr2_4:61809361-61809380 Msa0340440:CDS 40.0%
!!! CGTATATGTTTTGATGGTCC+TGG + chr2_4:61809714-61809733 Msa0340440:intron 40.0%
AAGCAAATCCAAACAAACCC+AGG - chr2_4:61809735-61809754 None:intergenic 40.0%
GCTTGTTTGAACTTATCTGC+TGG + chr2_4:61809751-61809770 Msa0340440:intron 40.0%
TAAGCACTTGTGAGACTGTT+TGG + chr2_4:61809776-61809795 Msa0340440:intron 40.0%
AATGGGCACATAAAATCCAC+TGG + chr2_4:61810081-61810100 Msa0340440:CDS 40.0%
CTCCAAAAATAATGCTCCAG+TGG - chr2_4:61810100-61810119 None:intergenic 40.0%
!!! CACTGGAGCATTATTTTTGG+AGG + chr2_4:61810098-61810117 Msa0340440:CDS 40.0%
!!! GAGCATTATTTTTGGAGGTG+AGG + chr2_4:61810103-61810122 Msa0340440:intron 40.0%
TCTATTCTCCATGAACATGC+AGG + chr2_4:61810144-61810163 Msa0340440:intron 40.0%
CTATTCTCCATGAACATGCA+GGG + chr2_4:61810145-61810164 Msa0340440:intron 40.0%
TTACACAGAAATGGCTTCAC+AGG - chr2_4:61810246-61810265 None:intergenic 40.0%
AGCCATTTCTGTGTAACTAC+AGG + chr2_4:61810250-61810269 Msa0340440:intron 40.0%
AGCCTGTAGTTACACAGAAA+TGG - chr2_4:61810255-61810274 None:intergenic 40.0%
ATCAATTGTCCATCTTCTGC+TGG - chr2_4:61810299-61810318 None:intergenic 40.0%
TACCTTGGCAATGTTGGAAA+TGG + chr2_4:61810671-61810690 Msa0340440:CDS 40.0%
TTGTCAATATGATCATGGGC+AGG + chr2_4:61810711-61810730 Msa0340440:CDS 40.0%
CAGAAGCAAACCTTCAGAAA+AGG - chr2_4:61810846-61810865 None:intergenic 40.0%
TTGCTTCTGAGTGAGAAAGT+TGG + chr2_4:61810857-61810876 Msa0340440:CDS 40.0%
TGCTTCTGAGTGAGAAAGTT+GGG + chr2_4:61810858-61810877 Msa0340440:CDS 40.0%
!! GCTAGATCCAAAAGTACTAG+TGG + chr2_4:61810880-61810899 Msa0340440:CDS 40.0%
!! AGATCCAAAAGTACTAGTGG+AGG + chr2_4:61810883-61810902 Msa0340440:CDS 40.0%
AGTGCATGGTGTGTTTATGT+CGG + chr2_4:61810943-61810962 Msa0340440:intron 40.0%
!!! TGTTTTAGGGGAAATGCAGT+TGG - chr2_4:61811123-61811142 None:intergenic 40.0%
! TGCCTTCTGCTGATGTTTTA+GGG - chr2_4:61811136-61811155 None:intergenic 40.0%
! TTGCCTTCTGCTGATGTTTT+AGG - chr2_4:61811137-61811156 None:intergenic 40.0%
TTGCTCTCACACAGGATTAA+TGG + chr2_4:61811207-61811226 Msa0340440:intron 40.0%
!! CGAACAGAGAAGGTATTCAG+TGG + chr2_4:61805839-61805858 Msa0340440:CDS 45.0%
TTCCTCACAACTCTACGTTG+TGG + chr2_4:61805968-61805987 Msa0340440:intron 45.0%
TCCTCACAACTCTACGTTGT+GGG + chr2_4:61805969-61805988 Msa0340440:intron 45.0%
GGCGAATGCTTGTACAATCA+AGG + chr2_4:61806328-61806347 Msa0340440:intron 45.0%
GTACAATCAAGGGGTAGCTA+TGG + chr2_4:61806339-61806358 Msa0340440:intron 45.0%
! AATATTGTTAGCTTCGCCGC+TGG + chr2_4:61806490-61806509 Msa0340440:intron 45.0%
! ATATTGTTAGCTTCGCCGCT+GGG + chr2_4:61806491-61806510 Msa0340440:intron 45.0%
AATGTTAACCGGTGCTCCAA+GGG + chr2_4:61806889-61806908 Msa0340440:intron 45.0%
!! GACAGTATGGTTGGTGACAT+TGG + chr2_4:61807075-61807094 Msa0340440:intron 45.0%
TACACTTGTGACACTGTGGT+TGG - chr2_4:61807101-61807120 None:intergenic 45.0%
GACACTTGTGACATTGTGGT+TGG + chr2_4:61807159-61807178 Msa0340440:intron 45.0%
GGTACTCACGGGTATCATTT+AGG - chr2_4:61807220-61807239 None:intergenic 45.0%
ACAGGAAGAAGAACACAGGA+AGG + chr2_4:61808020-61808039 Msa0340440:intron 45.0%
CACAGGAAGGATGAGTAGTA+TGG + chr2_4:61808033-61808052 Msa0340440:CDS 45.0%
CGGAGAGTTGAAGTGATGAA+GGG - chr2_4:61808101-61808120 None:intergenic 45.0%
!!! TTTTTTGGGCCTCGGTATCA+TGG + chr2_4:61808273-61808292 Msa0340440:CDS 45.0%
!! TTTTTGGGCCTCGGTATCAT+GGG + chr2_4:61808274-61808293 Msa0340440:CDS 45.0%
CAGATATAAACCTTCTCCCG+AGG + chr2_4:61809184-61809203 Msa0340440:intron 45.0%
! ACAAGATGCTGCTACTTCCT+CGG - chr2_4:61809204-61809223 None:intergenic 45.0%
! ACTTTGAGGATCAGCAAGCA+TGG - chr2_4:61809240-61809259 None:intergenic 45.0%
CAAGCAACATCCACCTGATA+TGG - chr2_4:61809334-61809353 None:intergenic 45.0%
! TATCAGGTGGATGTTGCTTG+TGG + chr2_4:61809334-61809353 Msa0340440:intron 45.0%
! GATGTTGCTTGTGGAAAGCA+TGG + chr2_4:61809343-61809362 Msa0340440:CDS 45.0%
! GGAAAGCATGGAGTTGCTAA+TGG + chr2_4:61809355-61809374 Msa0340440:CDS 45.0%
AATGGAATCGGTCCAGGAAA+AGG + chr2_4:61809373-61809392 Msa0340440:CDS 45.0%
ATGGAATCGGTCCAGGAAAA+GGG + chr2_4:61809374-61809393 Msa0340440:CDS 45.0%
! TTGATGGTCCTGGGTTTGTT+TGG + chr2_4:61809724-61809743 Msa0340440:intron 45.0%
GGATGTTTCAACTGTTGACG+TGG + chr2_4:61810041-61810060 Msa0340440:CDS 45.0%
!! AAGAGTACCCTGCATGTTCA+TGG - chr2_4:61810155-61810174 None:intergenic 45.0%
TAACTACAGGCTCCAGTTTC+AGG + chr2_4:61810263-61810282 Msa0340440:intron 45.0%
!!! GGCTTTTTGGAACCTGAAAC+TGG - chr2_4:61810278-61810297 None:intergenic 45.0%
TCCAAAAAGCCAGCAGAAGA+TGG + chr2_4:61810287-61810306 Msa0340440:CDS 45.0%
!!! TCCATCTTCTGCTGGCTTTT+TGG - chr2_4:61810291-61810310 None:intergenic 45.0%
ATTTGGTCTGGGAAAGGAGT+TGG + chr2_4:61810369-61810388 Msa0340440:intron 45.0%
TTCCCCATGATGTCCAAGAA+CGG - chr2_4:61810542-61810561 None:intergenic 45.0%
CTCCATTTCCAACATTGCCA+AGG - chr2_4:61810676-61810695 None:intergenic 45.0%
TGGTGTGTTTATGTCGGAGT+CGG + chr2_4:61810949-61810968 Msa0340440:intron 45.0%
! GTTGGTGCTTAGTAGGACAT+GGG + chr2_4:61810971-61810990 Msa0340440:intron 45.0%
TATATGGGGCCCTTACGAAA+TGG + chr2_4:61811014-61811033 Msa0340440:intron 45.0%
! CGAGTACATTGGAGCACTAA+TGG - chr2_4:61811067-61811086 None:intergenic 45.0%
GCTCCAATGTACTCGATGAA+AGG + chr2_4:61811072-61811091 Msa0340440:CDS 45.0%
TCCCCTAAAACATCAGCAGA+AGG + chr2_4:61811131-61811150 Msa0340440:CDS 45.0%
!! GCCTTCTGCTGATGTTTTAG+GGG - chr2_4:61811135-61811154 None:intergenic 45.0%
CACACAGGATTAATGGTGAC+AGG + chr2_4:61811214-61811233 Msa0340440:intron 45.0%
ATCACACGGCTATAGTGATG+AGG + chr2_4:61811325-61811344 Msa0340440:CDS 45.0%
CTCCGAAAAAGCTCTCTGAT+AGG - chr2_4:61811627-61811646 None:intergenic 45.0%
!!! TCAGAGAGCTTTTTCGGAGA+TGG + chr2_4:61811628-61811647 Msa0340440:three_prime_UTR 45.0%
TCGGAGATGGTCAAGTCATT+TGG + chr2_4:61811641-61811660 Msa0340440:three_prime_UTR 45.0%
ATCAGAACATTGACACTCCC+CGG + chr2_4:61811727-61811746 Msa0340440:three_prime_UTR 45.0%
!! AAAAAAAAAACAATATATAT+AGG + chr2_4:61806197-61806216 Msa0340440:intron 5.0%
!! AAAAAAAAACAATATATATA+GGG + chr2_4:61806198-61806217 Msa0340440:intron 5.0%
!!! TATTTTTTCAAATAATTTAT+TGG + chr2_4:61807489-61807508 Msa0340440:intron 5.0%
!!! TTTTTTGTTAATAAATTTTT+AGG + chr2_4:61807702-61807721 Msa0340440:intron 5.0%
!!! TTTTTGTTAATAAATTTTTA+GGG + chr2_4:61807703-61807722 Msa0340440:intron 5.0%
!! AATTTAAATAATTCAATTAT+AGG - chr2_4:61808655-61808674 None:intergenic 5.0%
!!! AATTGAATTATTTAAATTTT+CGG + chr2_4:61808657-61808676 Msa0340440:intron 5.0%
!! AATTTAAATAATTCAATTAT+AGG - chr2_4:61808655-61808674 None:intergenic 5.0%
!!! ATTGAATTATTTAAATTTTT+CGG + chr2_4:61808771-61808790 Msa0340440:intron 5.0%
!! TTTAAAAAATCAATAATTAT+AGG - chr2_4:61808882-61808901 None:intergenic 5.0%
!!! ATTATTGATTTTTTAAATTT+TGG + chr2_4:61808885-61808904 Msa0340440:intron 5.0%
!!! TTATTGATTTTTTAAATTTT+GGG + chr2_4:61808886-61808905 Msa0340440:intron 5.0%
!!! ATTTTATTATATAATATTTC+AGG + chr2_4:61810488-61810507 Msa0340440:intron 5.0%
TCCCACAACGTAGAGTTGTG+AGG - chr2_4:61805973-61805992 None:intergenic 50.0%
GAATGTTAACCGGTGCTCCA+AGG + chr2_4:61806888-61806907 Msa0340440:intron 50.0%
GCGGAGAGTTGAAGTGATGA+AGG - chr2_4:61808102-61808121 None:intergenic 50.0%
TCTGCTTCTCAACAACCCCA+AGG + chr2_4:61808148-61808167 Msa0340440:CDS 50.0%
TCTCAACAACCCCAAGGACA+AGG + chr2_4:61808154-61808173 Msa0340440:CDS 50.0%
CAAAAAACCAACCCGTGGAG+GGG - chr2_4:61808260-61808279 None:intergenic 50.0%
CCAAAAAACCAACCCGTGGA+GGG - chr2_4:61808261-61808280 None:intergenic 50.0%
!!! CCTCCACGGGTTGGTTTTTT+GGG + chr2_4:61808259-61808278 Msa0340440:CDS 50.0%
CTAGTAACATGTGGCAGCAG+TGG + chr2_4:61808553-61808572 Msa0340440:intron 50.0%
TGGGCCACTACATCACTTTG+TGG + chr2_4:61808681-61808700 Msa0340440:intron 50.0%
GGGCCACTACATCACTTTGT+GGG + chr2_4:61808796-61808815 Msa0340440:intron 50.0%
!!! TTAAATTTTGGGGTGGGCCG+TGG + chr2_4:61808897-61808916 Msa0340440:intron 50.0%
AGAATTCTGCCACACAGTGG+TGG - chr2_4:61808946-61808965 None:intergenic 50.0%
AGGAGAATTCTGCCACACAG+TGG - chr2_4:61808949-61808968 None:intergenic 50.0%
TTGGCTCCCAAGCTGATTAG+AGG - chr2_4:61809044-61809063 None:intergenic 50.0%
! CAAGATGCTGCTACTTCCTC+GGG - chr2_4:61809203-61809222 None:intergenic 50.0%
GTTGCTAATGGAATCGGTCC+AGG + chr2_4:61809367-61809386 Msa0340440:CDS 50.0%
!! TCTGGGAAAGGAGTTGGTGA+AGG + chr2_4:61810375-61810394 Msa0340440:intron 50.0%
TGAAACGGTTGCTCCGTTCT+TGG + chr2_4:61810526-61810545 Msa0340440:CDS 50.0%
TGCTCCGTTCTTGGACATCA+TGG + chr2_4:61810535-61810554 Msa0340440:CDS 50.0%
GCTCCGTTCTTGGACATCAT+GGG + chr2_4:61810536-61810555 Msa0340440:CDS 50.0%
CTCCGTTCTTGGACATCATG+GGG + chr2_4:61810537-61810556 Msa0340440:CDS 50.0%
GTGTTTATGTCGGAGTCGGT+TGG + chr2_4:61810953-61810972 Msa0340440:intron 50.0%
! GGTTGGTGCTTAGTAGGACA+TGG + chr2_4:61810970-61810989 Msa0340440:intron 50.0%
GGGCCTTTCATCGAGTACAT+TGG - chr2_4:61811078-61811097 None:intergenic 50.0%
! ACAGGATCTAAGACTTGCCC+TGG + chr2_4:61811232-61811251 Msa0340440:intron 50.0%
! CAGGATCTAAGACTTGCCCT+GGG + chr2_4:61811233-61811252 Msa0340440:intron 50.0%
! AGGATCTAAGACTTGCCCTG+GGG + chr2_4:61811234-61811253 Msa0340440:intron 50.0%
AACAGACTCTGCTAACCCCA+GGG - chr2_4:61811252-61811271 None:intergenic 50.0%
AAACAGACTCTGCTAACCCC+AGG - chr2_4:61811253-61811272 None:intergenic 50.0%
CGCTGCAATCGGAATAGGTT+GGG - chr2_4:61811276-61811295 None:intergenic 50.0%
CCAACCTATTCCGATTGCAG+CGG + chr2_4:61811274-61811293 Msa0340440:CDS 50.0%
CAGCACTCAGAAAACCAGTG+AGG + chr2_4:61811386-61811405 Msa0340440:CDS 50.0%
CTGTCTCATAAGAGCCTCAC+TGG - chr2_4:61811403-61811422 None:intergenic 50.0%
! GGTTGCTAACTTGCACCCAG+CGG - chr2_4:61806509-61806528 None:intergenic 55.0%
AACCAATGCCCTTGGAGCAC+CGG - chr2_4:61806900-61806919 None:intergenic 55.0%
GGATGCTCAACCAATGCCCT+TGG - chr2_4:61806908-61806927 None:intergenic 55.0%
GAAATGTGGCGAGAGAAGCG+CGG - chr2_4:61808121-61808140 None:intergenic 55.0%
!!! CCCTCCACGGGTTGGTTTTT+TGG + chr2_4:61808258-61808277 Msa0340440:CDS 55.0%
CCCAAAAAACCAACCCGTGG+AGG - chr2_4:61808262-61808281 None:intergenic 55.0%
AGGCCCAAAAAACCAACCCG+TGG - chr2_4:61808265-61808284 None:intergenic 55.0%
!!! CGGGTTGGTTTTTTGGGCCT+CGG + chr2_4:61808265-61808284 Msa0340440:CDS 55.0%
GTAACATGTGGCAGCAGTGG+CGG + chr2_4:61808556-61808575 Msa0340440:intron 55.0%
GGGCCACTACATCACTTTGC+AGG + chr2_4:61808682-61808701 Msa0340440:intron 55.0%
! ACAGTGGTGGAGCCCTTCAT+GGG - chr2_4:61808933-61808952 None:intergenic 55.0%
! GGAGTCGGTTGGTGCTTAGT+AGG + chr2_4:61810964-61810983 Msa0340440:intron 55.0%
CCGCTGCAATCGGAATAGGT+TGG - chr2_4:61811277-61811296 None:intergenic 55.0%
TCGTTAGCAGCCGCTGCAAT+CGG - chr2_4:61811287-61811306 None:intergenic 55.0%
! AGAGAGCGCACACGCACACA+CGG - chr2_4:61806821-61806840 None:intergenic 60.0%
! AACCGGTGCTCCAAGGGCAT+TGG + chr2_4:61806895-61806914 Msa0340440:intron 60.0%
CAGGGATTGACACCCCTCCA+CGG + chr2_4:61808245-61808264 Msa0340440:intron 60.0%
AGGGATTGACACCCCTCCAC+GGG + chr2_4:61808246-61808265 Msa0340440:intron 60.0%
ATTGACACCCCTCCACGGGT+TGG + chr2_4:61808250-61808269 Msa0340440:CDS 60.0%
! TTGGGGTGCCCATGATACCG+AGG - chr2_4:61808285-61808304 None:intergenic 60.0%
CGGTATCATGGGCACCCCAA+TGG + chr2_4:61808285-61808304 Msa0340440:CDS 60.0%
! AGCCCTTCATGGGCTGAGGT+GGG - chr2_4:61808923-61808942 None:intergenic 60.0%
! CACAGTGGTGGAGCCCTTCA+TGG - chr2_4:61808934-61808953 None:intergenic 60.0%
TGAAGGGCTCCACCACTGTG+TGG + chr2_4:61808934-61808953 Msa0340440:intron 60.0%
! GCTGCTACTTCCTCGGGAGA+AGG - chr2_4:61809197-61809216 None:intergenic 60.0%
GCAGCCGCTGCAATCGGAAT+AGG - chr2_4:61811281-61811300 None:intergenic 60.0%
CCCACACACACACGCACAGG+GGG - chr2_4:61806789-61806808 None:intergenic 65.0%
CCCCCTGTGCGTGTGTGTGT+GGG + chr2_4:61806786-61806805 Msa0340440:intron 65.0%
GCCCACACACACACGCACAG+GGG - chr2_4:61806790-61806809 None:intergenic 65.0%
CGCCCACACACACACGCACA+GGG - chr2_4:61806791-61806810 None:intergenic 65.0%
! TCATGGGCTGAGGTGGGCCA+CGG - chr2_4:61808917-61808936 None:intergenic 65.0%
TGGCCCACCTCAGCCCATGA+AGG + chr2_4:61808917-61808936 Msa0340440:intron 65.0%
GGCCCACCTCAGCCCATGAA+GGG + chr2_4:61808918-61808937 Msa0340440:intron 65.0%
! GAGCCCTTCATGGGCTGAGG+TGG - chr2_4:61808924-61808943 None:intergenic 65.0%
! GTGGAGCCCTTCATGGGCTG+AGG - chr2_4:61808927-61808946 None:intergenic 65.0%
GCCCCCTGTGCGTGTGTGTG+TGG + chr2_4:61806785-61806804 Msa0340440:intron 70.0%
GCGCCCACACACACACGCAC+AGG - chr2_4:61806792-61806811 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 61805834 61811928 61805834 ID=Msa0340440;Name=Msa0340440
chr2_4 mRNA 61805834 61811928 61805834 ID=Msa0340440-mRNA-1;Parent=Msa0340440;Name=Msa0340440-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.91|0.84|0.92|1|1|13|522|370
chr2_4 exon 61805834 61805895 61805834 ID=Msa0340440-mRNA-1:exon:19554;Parent=Msa0340440-mRNA-1
chr2_4 exon 61808024 61808175 61808024 ID=Msa0340440-mRNA-1:exon:19555;Parent=Msa0340440-mRNA-1
chr2_4 exon 61808248 61808329 61808248 ID=Msa0340440-mRNA-1:exon:19556;Parent=Msa0340440-mRNA-1
chr2_4 exon 61808998 61809063 61808998 ID=Msa0340440-mRNA-1:exon:19557;Parent=Msa0340440-mRNA-1
chr2_4 exon 61809187 61809262 61809187 ID=Msa0340440-mRNA-1:exon:19558;Parent=Msa0340440-mRNA-1
chr2_4 exon 61809340 61809395 61809340 ID=Msa0340440-mRNA-1:exon:19559;Parent=Msa0340440-mRNA-1
chr2_4 exon 61810035 61810119 61810035 ID=Msa0340440-mRNA-1:exon:19560;Parent=Msa0340440-mRNA-1
chr2_4 exon 61810272 61810332 61810272 ID=Msa0340440-mRNA-1:exon:19561;Parent=Msa0340440-mRNA-1
chr2_4 exon 61810510 61810562 61810510 ID=Msa0340440-mRNA-1:exon:19562;Parent=Msa0340440-mRNA-1
chr2_4 exon 61810662 61810732 61810662 ID=Msa0340440-mRNA-1:exon:19563;Parent=Msa0340440-mRNA-1
chr2_4 exon 61810832 61810904 61810832 ID=Msa0340440-mRNA-1:exon:19564;Parent=Msa0340440-mRNA-1
chr2_4 exon 61811048 61811152 61811048 ID=Msa0340440-mRNA-1:exon:19565;Parent=Msa0340440-mRNA-1
chr2_4 exon 61811236 61811928 61811236 ID=Msa0340440-mRNA-1:exon:19566;Parent=Msa0340440-mRNA-1
chr2_4 CDS 61805834 61805895 61805834 ID=Msa0340440-mRNA-1:cds;Parent=Msa0340440-mRNA-1
chr2_4 CDS 61808024 61808175 61808024 ID=Msa0340440-mRNA-1:cds;Parent=Msa0340440-mRNA-1
chr2_4 CDS 61808248 61808329 61808248 ID=Msa0340440-mRNA-1:cds;Parent=Msa0340440-mRNA-1
chr2_4 CDS 61808998 61809063 61808998 ID=Msa0340440-mRNA-1:cds;Parent=Msa0340440-mRNA-1
chr2_4 CDS 61809187 61809262 61809187 ID=Msa0340440-mRNA-1:cds;Parent=Msa0340440-mRNA-1
chr2_4 CDS 61809340 61809395 61809340 ID=Msa0340440-mRNA-1:cds;Parent=Msa0340440-mRNA-1
chr2_4 CDS 61810035 61810119 61810035 ID=Msa0340440-mRNA-1:cds;Parent=Msa0340440-mRNA-1
chr2_4 CDS 61810272 61810332 61810272 ID=Msa0340440-mRNA-1:cds;Parent=Msa0340440-mRNA-1
chr2_4 CDS 61810510 61810562 61810510 ID=Msa0340440-mRNA-1:cds;Parent=Msa0340440-mRNA-1
chr2_4 CDS 61810662 61810732 61810662 ID=Msa0340440-mRNA-1:cds;Parent=Msa0340440-mRNA-1
chr2_4 CDS 61810832 61810904 61810832 ID=Msa0340440-mRNA-1:cds;Parent=Msa0340440-mRNA-1
chr2_4 CDS 61811048 61811152 61811048 ID=Msa0340440-mRNA-1:cds;Parent=Msa0340440-mRNA-1
chr2_4 CDS 61811236 61811406 61811236 ID=Msa0340440-mRNA-1:cds;Parent=Msa0340440-mRNA-1
chr2_4 three_prime_UTR 61811407 61811928 61811407 ID=Msa0340440-mRNA-1:three_prime_utr;Parent=Msa0340440-mRNA-1
Gene Sequence

>Msa0340440

ATGCGCGAACAGAGAAGGTATTCAGTGGACAAAGACATAGGTCTTGATGAAAACTTTGCCTGGAAGAAGAACACAGGAAGGATGAGTAGTATGGTGAACTGCAGTCAGTTTGTGACTACAATGCGCTCTGCCTTTTCCCTTCATCACTTCAACTCTCCGCGCTTCTCTCGCCACATTTCCAATGTTTCTGCTTCTCAACAACCCCAAGGACAAGGGATTGACACCCCTCCACGGGTTGGTTTTTTGGGCCTCGGTATCATGGGCACCCCAATGGCTCTAAATCTCATCAAAGCTGGAGTTGATCTCACTGTTTGGAATAGGACCAAGAGCAAATGTGATCCTCTAATCAGCTTGGGAGCCAAATATAAACCTTCTCCCGAGGAAGTAGCAGCATCTTGTGATCTCACGTTTGCCATGCTTGCTGATCCTCAAAGTGCTGTGGATGTTGCTTGTGGAAAGCATGGAGTTGCTAATGGAATCGGTCCAGGAAAAGGATACGTGGATGTTTCAACTGTTGACGTGGACACTTCTAAATTGATTAATGGGCACATAAAATCCACTGGAGCATTATTTTTGGAGGCTCCAGTTTCAGGTTCCAAAAAGCCAGCAGAAGATGGACAATTGATATTTCTTACAGCAGGCGACAGAAATCTTTATGAAACGGTTGCTCCGTTCTTGGACATCATGGGGAAATCTAAATTTTACCTTGGCAATGTTGGAAATGGAGCTGCAATGAAGCTTGTTGTCAATATGATCATGGGCAGTATGATGGCATCCTTTTCTGAAGGTTTGCTTCTGAGTGAGAAAGTTGGGCTAGATCCAAAAGTACTAGTGGAGGTAATTTCACAAGGTGCCATTAGTGCTCCAATGTACTCGATGAAAGGCCCATCCATGATACAGTCAAATTATCCAACTGCATTTCCCCTAAAACATCAGCAGAAGGATCTAAGACTTGCCCTGGGGTTAGCAGAGTCTGTTTCCCAACCTATTCCGATTGCAGCGGCTGCTAACGAATTATATAAAGTTGCAAAATCACACGGCTATAGTGATGAGGACTTTTCAGCTGTCATTGAAGCATTAAAATCCAAATTTCAGCACTCAGAAAACCAGTGA

Protein sequence

>Msa0340440

MREQRRYSVDKDIGLDENFAWKKNTGRMSSMVNCSQFVTTMRSAFSLHHFNSPRFSRHISNVSASQQPQGQGIDTPPRVGFLGLGIMGTPMALNLIKAGVDLTVWNRTKSKCDPLISLGAKYKPSPEEVAASCDLTFAMLADPQSAVDVACGKHGVANGIGPGKGYVDVSTVDVDTSKLINGHIKSTGALFLEAPVSGSKKPAEDGQLIFLTAGDRNLYETVAPFLDIMGKSKFYLGNVGNGAAMKLVVNMIMGSMMASFSEGLLLSEKVGLDPKVLVEVISQGAISAPMYSMKGPSMIQSNYPTAFPLKHQQKDLRLALGLAESVSQPIPIAAAANELYKVAKSHGYSDEDFSAVIEALKSKFQHSENQ*