AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0312780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312780 MtrunA17_Chr2g0282181 90.909 308 7 5 1 308 1 287 0.0 558
Msa0312780 MtrunA17_Chr4g0027101 38.433 268 143 4 21 286 3 250 4.56e-52 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312780 AT5G22620.4 43.981 216 110 2 75 289 31 236 3.88e-58 193
Msa0312780 AT5G22620.3 43.981 216 110 2 75 289 31 236 3.88e-58 193
Msa0312780 AT5G22620.1 43.981 216 110 2 75 289 31 236 4.10e-58 194
Msa0312780 AT5G22620.5 43.981 216 110 2 75 289 31 236 4.10e-58 194
Msa0312780 AT5G22620.2 43.981 216 110 2 75 289 31 236 4.10e-58 194
Msa0312780 AT5G22620.6 43.981 216 110 2 75 289 31 236 4.40e-58 194

Find 73 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCAGTTTGCTTCTAATT+TGG 0.164289 2_4:+7941914 Msa0312780:intron
TCTACCATTCATGACAAAAT+TGG 0.307684 2_4:-7941997 None:intergenic
GAGATGAAATGAAAAGAATT+TGG 0.326219 2_4:+7940216 Msa0312780:five_prime_UTR
AGCAAACTGCTGAAATTATA+TGG 0.326556 2_4:+7941158 Msa0312780:intron
TTCAGCAACCAAGAGATTTC+AGG 0.337173 2_4:-7942897 None:intergenic
CTAACCTTGGCACGAGATAT+TGG 0.340655 2_4:-7941053 None:intergenic
TGATGAAGTGATTAACTCAT+TGG 0.341759 2_4:-7940705 None:intergenic
GCATTAACTTGCACTGCTTT+AGG 0.388052 2_4:+7942205 Msa0312780:CDS
AAGCAAGCACGGTGTTAGTA+TGG 0.392916 2_4:+7940265 Msa0312780:exon
GGATGCTAAGCAAATATATA+AGG 0.396264 2_4:+7941944 Msa0312780:CDS
GAATGCTGAAAGTAGAATTC+AGG 0.401668 2_4:+7940766 Msa0312780:CDS
ATAAGGAGGAATACAGAATC+TGG 0.408630 2_4:+7941961 Msa0312780:CDS
ACTAATAATGCTTACCTCTC+AGG 0.408982 2_4:-7942235 None:intergenic
TGCTTCTAATTTGGAGGCAG+TGG 0.409080 2_4:+7941923 Msa0312780:CDS
ACTTGCACTGCTTTAGGCCT+TGG 0.413697 2_4:+7942211 Msa0312780:CDS
GGATAGCTGCAAGAGATTGT+TGG 0.443903 2_4:+7942039 Msa0312780:CDS
ATATCTCTCTATCACCTTGA+AGG 0.451579 2_4:+7941226 Msa0312780:CDS
AAGCACGGTGTTAGTATGGC+AGG 0.454438 2_4:+7940269 Msa0312780:exon
TCCCACCGTTGTTGATATCA+AGG 0.457935 2_4:-7942784 None:intergenic
GATATCCTGTACAAGATCTC+TGG 0.459702 2_4:+7942018 Msa0312780:CDS
CTCGAGCATTGCTTCTCCTC+TGG 0.459790 2_4:-7942828 None:intergenic
AGACTCAGTACACTAATCAT+TGG 0.470577 2_4:-7943051 None:intergenic
TTGTCAGTACTAACTGAGGC+TGG 0.472288 2_4:+7940963 Msa0312780:CDS
GAGAAGAAGCGAAGGAGGAG+CGG 0.474449 2_4:-7940355 None:intergenic
CAACACTAGTGAGTGCTTGA+TGG 0.481250 2_4:+7942966 Msa0312780:three_prime_UTR
TCAGTTTGCTTCTAATTTGG+AGG 0.487074 2_4:+7941917 Msa0312780:intron
TTGAGTTAACCTATGGCAGC+AGG 0.491914 2_4:-7940443 None:intergenic
AGAAGAAGCGAAGGAGGAGC+GGG 0.498095 2_4:-7940354 None:intergenic
TAAGGCATGGTCTTAGCACT+TGG 0.512686 2_4:+7940744 Msa0312780:CDS
TGACTCACAAATCAATATTG+AGG 0.513537 2_4:+7942182 Msa0312780:CDS
CAGTGAATGCGGCGAGTGAG+AGG 0.516000 2_4:-7940389 None:intergenic
GACTCACAAATCAATATTGA+GGG 0.516265 2_4:+7942183 Msa0312780:CDS
ACTTCATACCCTGCTGCCAT+AGG 0.523920 2_4:+7940434 Msa0312780:CDS
GCTTGCTTCACCTTCTCTTG+TGG 0.524058 2_4:-7940250 None:intergenic
CCATTCATGACAAAATTGGC+TGG 0.527605 2_4:-7941993 None:intergenic
TGTCAGTACTAACTGAGGCT+GGG 0.534843 2_4:+7940964 Msa0312780:CDS
ATATCCTGCCTGAAATCTCT+TGG 0.545845 2_4:+7942889 Msa0312780:exon
TTGGTTGCTGAATGCAAGGA+AGG 0.547319 2_4:+7942908 Msa0312780:three_prime_UTR
AGTGAATCAGTGTAAACCAA+TGG 0.551565 2_4:-7941196 None:intergenic
GAAAGTAGAACCACAAGAGA+AGG 0.559878 2_4:+7940240 Msa0312780:five_prime_UTR
GTCAGTACTAACTGAGGCTG+GGG 0.566390 2_4:+7940965 Msa0312780:CDS
TCTCTTGGTTGCTGAATGCA+AGG 0.566644 2_4:+7942904 Msa0312780:three_prime_UTR
AGTACTAACTGAGGCTGGGG+TGG 0.571281 2_4:+7940968 Msa0312780:CDS
AGCACGGTGTTAGTATGGCA+GGG 0.576311 2_4:+7940270 Msa0312780:exon
TGCGGCGAGTGAGAGGAAGA+TGG 0.577745 2_4:-7940382 None:intergenic
ATGCTTACCTCTCAGGTCCA+AGG 0.582213 2_4:-7942228 None:intergenic
TTGTGAAAATTGAAAGAATG+AGG 0.583425 2_4:+7943200 Msa0312780:three_prime_UTR
ATGGAGCTGAGAAGAAGCGA+AGG 0.586294 2_4:-7940363 None:intergenic
AGAGAGATGCAAGAAAGCAT+TGG 0.588842 2_4:+7940998 Msa0312780:CDS
GGCAACTCATATAGAAGCTG+AGG 0.592506 2_4:+7942987 Msa0312780:three_prime_UTR
GAGCTGAGAAGAAGCGAAGG+AGG 0.593039 2_4:-7940360 None:intergenic
GCTATCCAGAGATCTTGTAC+AGG 0.594243 2_4:-7942023 None:intergenic
AAGAGAAGGTGAAGCAAGCA+CGG 0.595444 2_4:+7940254 Msa0312780:five_prime_UTR
ACTGCTGAAATTATATGGCA+AGG 0.595942 2_4:+7941163 Msa0312780:CDS
GCACGGTGTTAGTATGGCAG+GGG 0.601938 2_4:+7940271 Msa0312780:exon
CCCTTGATATCAACAACGGT+GGG 0.602416 2_4:+7942783 Msa0312780:CDS
CAGTCCAATATCTCGTGCCA+AGG 0.616021 2_4:+7941049 Msa0312780:CDS
ATATTGGACTGGCAAGACAT+TGG 0.617224 2_4:-7941037 None:intergenic
CGTTCCCTTGATATCAACAA+CGG 0.619427 2_4:+7942779 Msa0312780:CDS
TGCTAAGCAAATATATAAGG+AGG 0.624637 2_4:+7941947 Msa0312780:CDS
CTTTAGGCCTTGGACCTGAG+AGG 0.626309 2_4:+7942221 Msa0312780:CDS
CCCACCGTTGTTGATATCAA+GGG 0.631670 2_4:-7942783 None:intergenic
TCCCTTGATATCAACAACGG+TGG 0.632999 2_4:+7942782 Msa0312780:CDS
GCAACCAAGAGATTTCAGGC+AGG 0.642711 2_4:-7942893 None:intergenic
TGAGTTAACCTATGGCAGCA+GGG 0.655476 2_4:-7940442 None:intergenic
CTTGGCACGAGATATTGGAC+TGG 0.659086 2_4:-7941048 None:intergenic
TAGAAGTTGAGCAGTGAATG+CGG 0.662780 2_4:-7940400 None:intergenic
AGCTGCAAGAGATTGTTGGA+AGG 0.663605 2_4:+7942043 Msa0312780:CDS
GAGCGGGAAATAGTCAGACA+TGG 0.675401 2_4:-7940338 None:intergenic
CAGAGGAGAAGCAATGCTCG+AGG 0.686780 2_4:+7942829 Msa0312780:CDS
AGATTTGTCAGTACTAACTG+AGG 0.717407 2_4:+7940959 Msa0312780:CDS
GTATTCAACTTCAACACCAG+AGG 0.718413 2_4:+7942812 Msa0312780:CDS
TGATTGTGAGCACAACAAAG+TGG 0.721715 2_4:-7940312 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAAGAATAAACATGA+AGG - chr2_4:7940504-7940523 None:intergenic 15.0%
!!! ACTATTATTTTATAGTTAAC+TGG + chr2_4:7941344-7941363 Msa0312780:intron 15.0%
!!! GATAGATTTTATATAGTTTA+AGG - chr2_4:7941467-7941486 None:intergenic 15.0%
!! ACTATATTTATATAGTTTAG+AGG + chr2_4:7941585-7941604 Msa0312780:intron 15.0%
!! TAGAAAATTGAAGTTATAAA+TGG - chr2_4:7942387-7942406 None:intergenic 15.0%
!! AAAACCAATGTTTAAAAAAT+TGG - chr2_4:7942622-7942641 None:intergenic 15.0%
!! ACAGAAAAATCAATACTATT+TGG - chr2_4:7940641-7940660 None:intergenic 20.0%
!! ATCAATTTAATGACAATGAA+TGG - chr2_4:7940918-7940937 None:intergenic 20.0%
!! TAAATTGATCATATGTGTTT+AGG + chr2_4:7940929-7940948 Msa0312780:intron 20.0%
!! AAATTGATCATATGTGTTTA+GGG + chr2_4:7940930-7940949 Msa0312780:intron 20.0%
!! TGATAGTCAATTTATTTAAC+TGG + chr2_4:7941118-7941137 Msa0312780:intron 20.0%
!!! TCAATTTATTTAACTGGTTT+TGG + chr2_4:7941124-7941143 Msa0312780:intron 20.0%
!! ATATAGTTTAAGGACTAAAT+TGG - chr2_4:7941457-7941476 None:intergenic 20.0%
!! ACAGATTTGTATATACTTTA+AGG - chr2_4:7941498-7941517 None:intergenic 20.0%
!! TTTACATTTCATATACCATA+AGG + chr2_4:7941555-7941574 Msa0312780:intron 20.0%
!! AATATAGTAAATAGTCCTTA+TGG - chr2_4:7941573-7941592 None:intergenic 20.0%
!!! GACTAAATTGATGATTTATT+TGG + chr2_4:7941637-7941656 Msa0312780:intron 20.0%
!! CTATAGTTTAATCATAAAGA+AGG - chr2_4:7941721-7941740 None:intergenic 20.0%
!! CTTCTTTATGATTAAACTAT+AGG + chr2_4:7941719-7941738 Msa0312780:intron 20.0%
!! AAGTACATATTTCAATAAGT+AGG - chr2_4:7942292-7942311 None:intergenic 20.0%
!! AATTGAAGTTATAAATGGTA+CGG - chr2_4:7942382-7942401 None:intergenic 20.0%
!!! TTTTTGATAAAGATTCAAGT+TGG + chr2_4:7942412-7942431 Msa0312780:intron 20.0%
! GAGATGAAATGAAAAGAATT+TGG + chr2_4:7940216-7940235 Msa0312780:five_prime_UTR 25.0%
! TTCTTTAAATTGAATAAGCG+AGG + chr2_4:7940513-7940532 Msa0312780:intron 25.0%
! GACTATTTGTAAAGAAATAC+TGG + chr2_4:7940538-7940557 Msa0312780:intron 25.0%
!!! AGTATTGATTTTTCTGTAAC+TGG + chr2_4:7940644-7940663 Msa0312780:CDS 25.0%
!!! TTTTGTTTTGATGTTTCACA+TGG + chr2_4:7940871-7940890 Msa0312780:intron 25.0%
! TAGTTTAGGGACTAAATTTA+TGG - chr2_4:7941423-7941442 None:intergenic 25.0%
!! AAATCAGTTTGCTTCTAATT+TGG + chr2_4:7941914-7941933 Msa0312780:intron 25.0%
! TTTAAGCAATGTTTCAAAAC+TGG + chr2_4:7942481-7942500 Msa0312780:intron 25.0%
! CCATTCTTTGATAAAAACAA+TGG - chr2_4:7942944-7942963 None:intergenic 25.0%
!!! CCATTGTTTTTATCAAAGAA+TGG + chr2_4:7942941-7942960 Msa0312780:three_prime_UTR 25.0%
!!! AAACTCTAAGATTTTGTGTA+GGG + chr2_4:7943128-7943147 Msa0312780:three_prime_UTR 25.0%
! TTGTGAAAATTGAAAGAATG+AGG + chr2_4:7943200-7943219 Msa0312780:three_prime_UTR 25.0%
AGTTGAATTGAGTTAACCTA+TGG - chr2_4:7940453-7940472 None:intergenic 30.0%
TTTAAATTGAATAAGCGAGG+AGG + chr2_4:7940516-7940535 Msa0312780:intron 30.0%
!! ATTGATTTTTCTGTAACTGG+TGG + chr2_4:7940647-7940666 Msa0312780:CDS 30.0%
TGATGAAGTGATTAACTCAT+TGG - chr2_4:7940708-7940727 None:intergenic 30.0%
! CAAAGAAAGTCACTCTTTTA+AGG + chr2_4:7940726-7940745 Msa0312780:CDS 30.0%
AGCAAACTGCTGAAATTATA+TGG + chr2_4:7941158-7941177 Msa0312780:intron 30.0%
! TCTGCTCAACTTTAAAAACA+AGG + chr2_4:7941271-7941290 Msa0312780:intron 30.0%
AGTTTAAGGACTAAATTGGT+GGG - chr2_4:7941453-7941472 None:intergenic 30.0%
TAGTTTAAGGACTAAATTGG+TGG - chr2_4:7941454-7941473 None:intergenic 30.0%
GTTTAATCATAAAGAAGGAC+AGG - chr2_4:7941716-7941735 None:intergenic 30.0%
ACTTTGCTCTGACTTTAAAT+AGG + chr2_4:7941793-7941812 Msa0312780:intron 30.0%
CTTTGCTCTGACTTTAAATA+GGG + chr2_4:7941794-7941813 Msa0312780:intron 30.0%
GGATGCTAAGCAAATATATA+AGG + chr2_4:7941944-7941963 Msa0312780:CDS 30.0%
TGCTAAGCAAATATATAAGG+AGG + chr2_4:7941947-7941966 Msa0312780:CDS 30.0%
TCTACCATTCATGACAAAAT+TGG - chr2_4:7942000-7942019 None:intergenic 30.0%
CAATGGCAAAAAAATCTTAC+AGG - chr2_4:7942083-7942102 None:intergenic 30.0%
TGACTCACAAATCAATATTG+AGG + chr2_4:7942182-7942201 Msa0312780:CDS 30.0%
GACTCACAAATCAATATTGA+GGG + chr2_4:7942183-7942202 Msa0312780:CDS 30.0%
ATATTTCAATAAGTAGGCAC+AGG - chr2_4:7942286-7942305 None:intergenic 30.0%
TTGCTAGTCAAATGATATCA+TGG + chr2_4:7942447-7942466 Msa0312780:intron 30.0%
GATATAGCCAATTAACGAAA+TGG + chr2_4:7942557-7942576 Msa0312780:intron 30.0%
CTAATTCAATTGGTTGAATC+GGG - chr2_4:7942589-7942608 None:intergenic 30.0%
GCTAATTCAATTGGTTGAAT+CGG - chr2_4:7942590-7942609 None:intergenic 30.0%
ACCAATTGAATTAGCTAGTT+CGG + chr2_4:7942595-7942614 Msa0312780:intron 30.0%
!!! CGGTCCAATTTTTTAAACAT+TGG + chr2_4:7942615-7942634 Msa0312780:intron 30.0%
! ATATTGGATAGAGCATCAAA+TGG - chr2_4:7942716-7942735 None:intergenic 30.0%
!!! CAAACTCTAAGATTTTGTGT+AGG + chr2_4:7943127-7943146 Msa0312780:three_prime_UTR 30.0%
ACATTTACTCCAATCCAACA+TGG + chr2_4:7940575-7940594 Msa0312780:intron 35.0%
CATTTACTCCAATCCAACAT+GGG + chr2_4:7940576-7940595 Msa0312780:intron 35.0%
!!! AAAGTCACTCTTTTAAGGCA+TGG + chr2_4:7940731-7940750 Msa0312780:CDS 35.0%
GAATGCTGAAAGTAGAATTC+AGG + chr2_4:7940766-7940785 Msa0312780:CDS 35.0%
CAAAACAAAAACTTCAGTCC+TGG - chr2_4:7940861-7940880 None:intergenic 35.0%
AGATTTGTCAGTACTAACTG+AGG + chr2_4:7940959-7940978 Msa0312780:CDS 35.0%
CAGCGGTGAAATTTAATTCT+CGG + chr2_4:7941077-7941096 Msa0312780:intron 35.0%
AGCGGTGAAATTTAATTCTC+GGG + chr2_4:7941078-7941097 Msa0312780:intron 35.0%
ACTGCTGAAATTATATGGCA+AGG + chr2_4:7941163-7941182 Msa0312780:CDS 35.0%
AGTGAATCAGTGTAAACCAA+TGG - chr2_4:7941199-7941218 None:intergenic 35.0%
ATATCTCTCTATCACCTTGA+AGG + chr2_4:7941226-7941245 Msa0312780:CDS 35.0%
CACCTTGAAGGATTGAAAAA+TGG + chr2_4:7941238-7941257 Msa0312780:CDS 35.0%
!! CACCATTTTTCAATCCTTCA+AGG - chr2_4:7941243-7941262 None:intergenic 35.0%
!!! TTTTAAAGTTGAGCAGAGAC+AGG - chr2_4:7941268-7941287 None:intergenic 35.0%
! TAACTGGCATACTTGTTGAT+AGG + chr2_4:7941360-7941379 Msa0312780:intron 35.0%
TCTCTAACATCCTAATAGCA+GGG + chr2_4:7941526-7941545 Msa0312780:intron 35.0%
TAAATTCAGTCCCTGCTATT+AGG - chr2_4:7941539-7941558 None:intergenic 35.0%
!! AGTCAGAGCAAAGTTTTGTA+TGG - chr2_4:7941787-7941806 None:intergenic 35.0%
ATCGATCCTTGCATTGAATA+CGG + chr2_4:7941856-7941875 Msa0312780:intron 35.0%
AAAACTCCGTATTCAATGCA+AGG - chr2_4:7941865-7941884 None:intergenic 35.0%
! TCAGTTTGCTTCTAATTTGG+AGG + chr2_4:7941917-7941936 Msa0312780:intron 35.0%
ATAAGGAGGAATACAGAATC+TGG + chr2_4:7941961-7941980 Msa0312780:CDS 35.0%
AAGATTCATCTTACTCTGCA+GGG + chr2_4:7942142-7942161 Msa0312780:intron 35.0%
ACTAATAATGCTTACCTCTC+AGG - chr2_4:7942238-7942257 None:intergenic 35.0%
GAAGTTATAAATGGTACGGA+AGG - chr2_4:7942378-7942397 None:intergenic 35.0%
AGTCAAATGATATCATGGTC+AGG + chr2_4:7942452-7942471 Msa0312780:intron 35.0%
GCAATGTTTCAAAACTGGTT+CGG + chr2_4:7942486-7942505 Msa0312780:intron 35.0%
TTCGTTAATTGGCTATATCC+CGG - chr2_4:7942556-7942575 None:intergenic 35.0%
ACCGAACTAGCTAATTCAAT+TGG - chr2_4:7942599-7942618 None:intergenic 35.0%
AATGTCAGCTGCTAGAATAT+TGG - chr2_4:7942732-7942751 None:intergenic 35.0%
AGACATTGATCACAATGTTC+AGG + chr2_4:7942753-7942772 Msa0312780:intron 35.0%
AGACTCAGTACACTAATCAT+TGG - chr2_4:7943054-7943073 None:intergenic 35.0%
GAAAGTAGAACCACAAGAGA+AGG + chr2_4:7940240-7940259 Msa0312780:five_prime_UTR 40.0%
TGATTGTGAGCACAACAAAG+TGG - chr2_4:7940315-7940334 None:intergenic 40.0%
TAGAAGTTGAGCAGTGAATG+CGG - chr2_4:7940403-7940422 None:intergenic 40.0%
AGCTAGCTGATGACATATAG+CGG - chr2_4:7940819-7940838 None:intergenic 40.0%
ATGACAATGAATGGCAGATG+TGG - chr2_4:7940909-7940928 None:intergenic 40.0%
! AGAGAGATGCAAGAAAGCAT+TGG + chr2_4:7940998-7941017 Msa0312780:CDS 40.0%
!! ATATTGGACTGGCAAGACAT+TGG - chr2_4:7941040-7941059 None:intergenic 40.0%
GCAAGGAAGAGAAAAACCAT+TGG + chr2_4:7941180-7941199 Msa0312780:CDS 40.0%
GTCTCTAACATCCTAATAGC+AGG + chr2_4:7941525-7941544 Msa0312780:intron 40.0%
!! TGAAGAGAGAAGGCTAGTTT+AGG + chr2_4:7941614-7941633 Msa0312780:intron 40.0%
!! GAAGAGAGAAGGCTAGTTTA+GGG + chr2_4:7941615-7941634 Msa0312780:intron 40.0%
CAAGGATCGATTAATCCAAG+GGG - chr2_4:7941847-7941866 None:intergenic 40.0%
GCAAGGATCGATTAATCCAA+GGG - chr2_4:7941848-7941867 None:intergenic 40.0%
TGCAAGGATCGATTAATCCA+AGG - chr2_4:7941849-7941868 None:intergenic 40.0%
CCATTCATGACAAAATTGGC+TGG - chr2_4:7941996-7942015 None:intergenic 40.0%
! CCAGCCAATTTTGTCATGAA+TGG + chr2_4:7941993-7942012 Msa0312780:CDS 40.0%
GATATCCTGTACAAGATCTC+TGG + chr2_4:7942018-7942037 Msa0312780:CDS 40.0%
CTTGCAACACTGTGTATCAA+TGG - chr2_4:7942100-7942119 None:intergenic 40.0%
CAAGATTCATCTTACTCTGC+AGG + chr2_4:7942141-7942160 Msa0312780:intron 40.0%
!! GCATTAACTTGCACTGCTTT+AGG + chr2_4:7942205-7942224 Msa0312780:CDS 40.0%
AGATCGAATTGGTGAGACTT+TGG + chr2_4:7942509-7942528 Msa0312780:intron 40.0%
GAACTGGCCATTTCGTTAAT+TGG - chr2_4:7942567-7942586 None:intergenic 40.0%
CGTTCCCTTGATATCAACAA+CGG + chr2_4:7942779-7942798 Msa0312780:CDS 40.0%
GTATTCAACTTCAACACCAG+AGG + chr2_4:7942812-7942831 Msa0312780:CDS 40.0%
ATATCCTGCCTGAAATCTCT+TGG + chr2_4:7942889-7942908 Msa0312780:exon 40.0%
TTCAGCAACCAAGAGATTTC+AGG - chr2_4:7942900-7942919 None:intergenic 40.0%
AAGAGAAGGTGAAGCAAGCA+CGG + chr2_4:7940254-7940273 Msa0312780:five_prime_UTR 45.0%
! AAGCAAGCACGGTGTTAGTA+TGG + chr2_4:7940265-7940284 Msa0312780:exon 45.0%
TGAGTTAACCTATGGCAGCA+GGG - chr2_4:7940445-7940464 None:intergenic 45.0%
TTGAGTTAACCTATGGCAGC+AGG - chr2_4:7940446-7940465 None:intergenic 45.0%
AACTTCAGCCCATGTTGGAT+TGG - chr2_4:7940587-7940606 None:intergenic 45.0%
! AATCCAACATGGGCTGAAGT+TGG + chr2_4:7940586-7940605 Msa0312780:intron 45.0%
AAACCAACTTCAGCCCATGT+TGG - chr2_4:7940592-7940611 None:intergenic 45.0%
!!! ATGGGCTGAAGTTGGTTTTG+TGG + chr2_4:7940594-7940613 Msa0312780:intron 45.0%
! TAAGGCATGGTCTTAGCACT+TGG + chr2_4:7940744-7940763 Msa0312780:CDS 45.0%
AACTTCAGTCCTGGAAGCAA+GGG - chr2_4:7940852-7940871 None:intergenic 45.0%
AAACTTCAGTCCTGGAAGCA+AGG - chr2_4:7940853-7940872 None:intergenic 45.0%
TTGTCAGTACTAACTGAGGC+TGG + chr2_4:7940963-7940982 Msa0312780:CDS 45.0%
TGTCAGTACTAACTGAGGCT+GGG + chr2_4:7940964-7940983 Msa0312780:CDS 45.0%
CTAACCTTGGCACGAGATAT+TGG - chr2_4:7941056-7941075 None:intergenic 45.0%
CAATATCTCGTGCCAAGGTT+AGG + chr2_4:7941054-7941073 Msa0312780:intron 45.0%
! GGTGGGAGTGTGATAGTTTA+GGG - chr2_4:7941436-7941455 None:intergenic 45.0%
! TGGTGGGAGTGTGATAGTTT+AGG - chr2_4:7941437-7941456 None:intergenic 45.0%
! GAGGCTAAGTTGAAGAGAGA+AGG + chr2_4:7941604-7941623 Msa0312780:intron 45.0%
TAGTCCACCGAAATTTGCAC+CGG - chr2_4:7941762-7941781 None:intergenic 45.0%
TGCTTCTAATTTGGAGGCAG+TGG + chr2_4:7941923-7941942 Msa0312780:CDS 45.0%
GCTATCCAGAGATCTTGTAC+AGG - chr2_4:7942026-7942045 None:intergenic 45.0%
GGATAGCTGCAAGAGATTGT+TGG + chr2_4:7942039-7942058 Msa0312780:CDS 45.0%
AGCTGCAAGAGATTGTTGGA+AGG + chr2_4:7942043-7942062 Msa0312780:CDS 45.0%
!! AACTGGTTCGGAGATCGAAT+TGG + chr2_4:7942498-7942517 Msa0312780:intron 45.0%
CAGCAAGACTGCAATGTAAC+CGG + chr2_4:7942534-7942553 Msa0312780:intron 45.0%
AGCAAGACTGCAATGTAACC+GGG + chr2_4:7942535-7942554 Msa0312780:intron 45.0%
CAATTGGTTGAATCGGGAAC+TGG - chr2_4:7942583-7942602 None:intergenic 45.0%
GTTCATGCTACACATGCAAG+AGG - chr2_4:7942685-7942704 None:intergenic 45.0%
TCCCTTGATATCAACAACGG+TGG + chr2_4:7942782-7942801 Msa0312780:CDS 45.0%
CCCACCGTTGTTGATATCAA+GGG - chr2_4:7942786-7942805 None:intergenic 45.0%
CCCTTGATATCAACAACGGT+GGG + chr2_4:7942783-7942802 Msa0312780:CDS 45.0%
TCCCACCGTTGTTGATATCA+AGG - chr2_4:7942787-7942806 None:intergenic 45.0%
TCTCTTGGTTGCTGAATGCA+AGG + chr2_4:7942904-7942923 Msa0312780:three_prime_UTR 45.0%
TTGGTTGCTGAATGCAAGGA+AGG + chr2_4:7942908-7942927 Msa0312780:three_prime_UTR 45.0%
CAACACTAGTGAGTGCTTGA+TGG + chr2_4:7942966-7942985 Msa0312780:three_prime_UTR 45.0%
GGCAACTCATATAGAAGCTG+AGG + chr2_4:7942987-7943006 Msa0312780:three_prime_UTR 45.0%
!!! ATATATTTTTAATATGTTTA+TGG + chr2_4:7941297-7941316 Msa0312780:intron 5.0%
!! AATATTTATCAAAAATATTA+AGG - chr2_4:7943086-7943105 None:intergenic 5.0%
GCTTGCTTCACCTTCTCTTG+TGG - chr2_4:7940253-7940272 None:intergenic 50.0%
! AAGCACGGTGTTAGTATGGC+AGG + chr2_4:7940269-7940288 Msa0312780:exon 50.0%
! AGCACGGTGTTAGTATGGCA+GGG + chr2_4:7940270-7940289 Msa0312780:exon 50.0%
GAGCGGGAAATAGTCAGACA+TGG - chr2_4:7940341-7940360 None:intergenic 50.0%
ATGGAGCTGAGAAGAAGCGA+AGG - chr2_4:7940366-7940385 None:intergenic 50.0%
ACTTCATACCCTGCTGCCAT+AGG + chr2_4:7940434-7940453 Msa0312780:CDS 50.0%
ATCCGTTATCCCTTGCTTCC+AGG + chr2_4:7940840-7940859 Msa0312780:intron 50.0%
GTCCTGGAAGCAAGGGATAA+CGG - chr2_4:7940845-7940864 None:intergenic 50.0%
GTCAGTACTAACTGAGGCTG+GGG + chr2_4:7940965-7940984 Msa0312780:CDS 50.0%
CTTGGCACGAGATATTGGAC+TGG - chr2_4:7941051-7941070 None:intergenic 50.0%
CAGTCCAATATCTCGTGCCA+AGG + chr2_4:7941049-7941068 Msa0312780:CDS 50.0%
ATTTCACCGCTGCCTAACCT+TGG - chr2_4:7941069-7941088 None:intergenic 50.0%
ATTCCCCCCGGTGCAAATTT+CGG + chr2_4:7941752-7941771 Msa0312780:intron 50.0%
AGTCCACCGAAATTTGCACC+GGG - chr2_4:7941761-7941780 None:intergenic 50.0%
! ACTTGCACTGCTTTAGGCCT+TGG + chr2_4:7942211-7942230 Msa0312780:CDS 50.0%
ATGCTTACCTCTCAGGTCCA+AGG - chr2_4:7942231-7942250 None:intergenic 50.0%
GCAACCAAGAGATTTCAGGC+AGG - chr2_4:7942896-7942915 None:intergenic 50.0%
! GCACGGTGTTAGTATGGCAG+GGG + chr2_4:7940271-7940290 Msa0312780:exon 55.0%
AGAAGAAGCGAAGGAGGAGC+GGG - chr2_4:7940357-7940376 None:intergenic 55.0%
GAGAAGAAGCGAAGGAGGAG+CGG - chr2_4:7940358-7940377 None:intergenic 55.0%
GAGCTGAGAAGAAGCGAAGG+AGG - chr2_4:7940363-7940382 None:intergenic 55.0%
AGTACTAACTGAGGCTGGGG+TGG + chr2_4:7940968-7940987 Msa0312780:CDS 55.0%
GGTCTAAGTTCGATTCCCCC+CGG + chr2_4:7941740-7941759 Msa0312780:intron 55.0%
TCCACCGAAATTTGCACCGG+GGG - chr2_4:7941759-7941778 None:intergenic 55.0%
GTCCACCGAAATTTGCACCG+GGG - chr2_4:7941760-7941779 None:intergenic 55.0%
ATAGGGCTCCCGCAAGTAGA+CGG + chr2_4:7941811-7941830 Msa0312780:intron 55.0%
CAATCCCACCGTCTACTTGC+GGG - chr2_4:7941822-7941841 None:intergenic 55.0%
CCAATCCCACCGTCTACTTG+CGG - chr2_4:7941823-7941842 None:intergenic 55.0%
CTTTAGGCCTTGGACCTGAG+AGG + chr2_4:7942221-7942240 Msa0312780:CDS 55.0%
! CTCGAGCATTGCTTCTCCTC+TGG - chr2_4:7942831-7942850 None:intergenic 55.0%
CAGAGGAGAAGCAATGCTCG+AGG + chr2_4:7942829-7942848 Msa0312780:CDS 55.0%
TGCGGCGAGTGAGAGGAAGA+TGG - chr2_4:7940385-7940404 None:intergenic 60.0%
CAGTGAATGCGGCGAGTGAG+AGG - chr2_4:7940392-7940411 None:intergenic 60.0%
CTCGTGCCAAGGTTAGGCAG+CGG + chr2_4:7941060-7941079 Msa0312780:intron 60.0%
CCACCGAAATTTGCACCGGG+GGG - chr2_4:7941758-7941777 None:intergenic 60.0%
CCGCAAGTAGACGGTGGGAT+TGG + chr2_4:7941820-7941839 Msa0312780:intron 60.0%
CCCCCCGGTGCAAATTTCGG+TGG + chr2_4:7941755-7941774 Msa0312780:intron 65.0%
GGCTCCCGCAAGTAGACGGT+GGG + chr2_4:7941815-7941834 Msa0312780:intron 65.0%
GACGGTGGGATTGGACCCCT+TGG + chr2_4:7941829-7941848 Msa0312780:intron 65.0%
GGGCTCCCGCAAGTAGACGG+TGG + chr2_4:7941814-7941833 Msa0312780:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 7940216 7943242 7940216 ID=Msa0312780;Name=Msa0312780
chr2_4 mRNA 7940216 7943242 7940216 ID=Msa0312780-mRNA-1;Parent=Msa0312780;Name=Msa0312780-mRNA-1;_AED=0.17;_eAED=0.17;_QI=68|0.83|0.71|1|1|1|7|341|308
chr2_4 exon 7940216 7940455 7940216 ID=Msa0312780-mRNA-1:exon:3097;Parent=Msa0312780-mRNA-1
chr2_4 exon 7940630 7940787 7940630 ID=Msa0312780-mRNA-1:exon:3098;Parent=Msa0312780-mRNA-1
chr2_4 exon 7940951 7941070 7940951 ID=Msa0312780-mRNA-1:exon:3099;Parent=Msa0312780-mRNA-1
chr2_4 exon 7941160 7941267 7941160 ID=Msa0312780-mRNA-1:exon:3100;Parent=Msa0312780-mRNA-1
chr2_4 exon 7941921 7942082 7941921 ID=Msa0312780-mRNA-1:exon:3101;Parent=Msa0312780-mRNA-1
chr2_4 exon 7942163 7942242 7942163 ID=Msa0312780-mRNA-1:exon:3102;Parent=Msa0312780-mRNA-1
chr2_4 exon 7942775 7943242 7942775 ID=Msa0312780-mRNA-1:exon:3103;Parent=Msa0312780-mRNA-1
chr2_4 five_prime_UTR 7940216 7940283 7940216 ID=Msa0312780-mRNA-1:five_prime_utr;Parent=Msa0312780-mRNA-1
chr2_4 CDS 7940284 7940455 7940284 ID=Msa0312780-mRNA-1:cds;Parent=Msa0312780-mRNA-1
chr2_4 CDS 7940630 7940787 7940630 ID=Msa0312780-mRNA-1:cds;Parent=Msa0312780-mRNA-1
chr2_4 CDS 7940951 7941070 7940951 ID=Msa0312780-mRNA-1:cds;Parent=Msa0312780-mRNA-1
chr2_4 CDS 7941160 7941267 7941160 ID=Msa0312780-mRNA-1:cds;Parent=Msa0312780-mRNA-1
chr2_4 CDS 7941921 7942082 7941921 ID=Msa0312780-mRNA-1:cds;Parent=Msa0312780-mRNA-1
chr2_4 CDS 7942163 7942242 7942163 ID=Msa0312780-mRNA-1:cds;Parent=Msa0312780-mRNA-1
chr2_4 CDS 7942775 7942901 7942775 ID=Msa0312780-mRNA-1:cds;Parent=Msa0312780-mRNA-1
chr2_4 three_prime_UTR 7942902 7943242 7942902 ID=Msa0312780-mRNA-1:three_prime_utr;Parent=Msa0312780-mRNA-1
Gene Sequence

>Msa0312780

ATGGCAGGGGCTGTTGTGTTTTTGAACACCACTTTGTTGTGCTCACAATCATCACCATGTCTGACTATTTCCCGCTCCTCCTTCGCTTCTTCTCAGCTCCATCTTCCTCTCACTCGCCGCATTCACTGCTCAACTTCTACTTCTACTTCTACTTCATACCCTGCTGCCATAGACAAACTTCCAAATAGTATTGATTTTTCTGTAACTGGTGGTGCATATGATTTCACAAAAGCAACAACATCACTAACCAATGAGTTAATCACTTCATCAAAGAAAGTCACTCTTTTAAGGCATGGTCTTAGCACTTGGAATGCTGAAAGTAGAATTCAGGGAAGCTCAGATTTGTCAGTACTAACTGAGGCTGGGGTGGAGCAAGCAGAGAGATGCAAGAAAGCATTGGAAAATATTCACTTTGACCAATGTCTTGCCAGTCCAATATCTCGTGCCAAGCAAACTGCTGAAATTATATGGCAAGGAAGAGAAAAACCATTGGTTTACACTGATTCACTTAAAGAAATATCTCTCTATCACCTTGAAGGATTGAAAAATGGTGAGCCTTTTGCTTCTAATTTGGAGGCAGTGGATGCTAAGCAAATATATAAGGAGGAATACAGAATCTGGAGAGAAGATCCAGCCAATTTTGTCATGAATGGTAGATATCCTGTACAAGATCTCTGGATAGCTGCAAGAGATTGTTGGAAGGAAATTTTGTTGTCACCTGGAGAAAGCTTTCTAGTTGTGACTCACAAATCAATATTGAGGGCATTAACTTGCACTGCTTTAGGCCTTGGACCTGAGAGGTTTCGTTCCCTTGATATCAACAACGGTGGGATATGCGTATTCAACTTCAACACCAGAGGAGAAGCAATGCTCGAGGCTTTAAACTTGACAGCTCACATGTATAGCGATCATGTATATCCTGCCTGA

Protein sequence

>Msa0312780

MAGAVVFLNTTLLCSQSSPCLTISRSSFASSQLHLPLTRRIHCSTSTSTSTSYPAAIDKLPNSIDFSVTGGAYDFTKATTSLTNELITSSKKVTLLRHGLSTWNAESRIQGSSDLSVLTEAGVEQAERCKKALENIHFDQCLASPISRAKQTAEIIWQGREKPLVYTDSLKEISLYHLEGLKNGEPFASNLEAVDAKQIYKEEYRIWREDPANFVMNGRYPVQDLWIAARDCWKEILLSPGESFLVVTHKSILRALTCTALGLGPERFRSLDINNGGICVFNFNTRGEAMLEALNLTAHMYSDHVYPA*