AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0438440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0438440 MtrunA17_Chr4g0000321 89.247 279 22 3 1 278 1 272 3.19e-178 491
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0438440 AT2G46910.1 70.356 253 68 3 32 277 30 282 3.36e-123 353

Find 81 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATATTATCTGAGTTATT+TGG 0.204203 3_3:+2704534 Msa0438440:CDS
TTTGGATGATAATATGCTTT+TGG 0.254717 3_3:+2704552 Msa0438440:CDS
TCCAACTTGTTAAAATCAAT+TGG 0.289643 3_3:-2701933 None:intergenic
GGAATTACCTCAAACAAATT+AGG 0.299344 3_3:-2702219 None:intergenic
ATAATGTGTTCTTTAATTGC+TGG 0.306537 3_3:-2704934 None:intergenic
GAAACTGAAGGTAAATATTT+CGG 0.318032 3_3:-2703597 None:intergenic
ATAAGCCGTGGTTGAGGAAT+TGG 0.329110 3_3:+2704693 Msa0438440:three_prime_UTR
GGAATTCTCATCATTGTATA+AGG 0.343085 3_3:+2704760 Msa0438440:three_prime_UTR
AGAGTCCTCTTTGTGTGTCT+TGG 0.357425 3_3:-2701742 None:intergenic
AAAGATCGTGGTAGTATTGC+TGG 0.362518 3_3:-2704107 None:intergenic
CAATTTCCCGTGAGGGATCC+TGG 0.375960 3_3:+2704410 Msa0438440:CDS
TTGAGTTGGAGAAATGGATT+TGG 0.379150 3_3:+2701435 Msa0438440:exon
CACCACTATGCATTAATAAT+AGG 0.383426 3_3:+2701494 Msa0438440:CDS
GGCCGTGCTGTTGGTGGAGG+AGG 0.385119 3_3:+2704574 Msa0438440:CDS
TAAGCTTCTCGTTCCTTCTC+TGG 0.389022 3_3:-2701403 None:intergenic
CATTGTAACTGTAGAGTGTA+TGG 0.400357 3_3:-2701522 None:intergenic
GAGAATTCCTTGTGGACTAT+AGG 0.403316 3_3:-2704746 None:intergenic
CCATCATATATATACCTTCC+AGG 0.410693 3_3:-2704428 None:intergenic
TTGGGCCGTGCTGTTGGTGG+AGG 0.425794 3_3:+2704571 Msa0438440:CDS
GCTTAGCTTGGCAGTTGAGT+TGG 0.428513 3_3:+2701421 Msa0438440:five_prime_UTR
GAGCATTCCTAATTTGTTTG+AGG 0.430425 3_3:+2702212 Msa0438440:CDS
TGGAAGAGAATGAGAACATC+AGG 0.437458 3_3:-2701987 None:intergenic
TGGCAGTTGAGTTGGAGAAA+TGG 0.444921 3_3:+2701429 Msa0438440:exon
ACAGTTACAATGTTAATAGA+AGG 0.448234 3_3:+2701533 Msa0438440:CDS
TCTTCAACGTTCTTCTATTG+AGG 0.448829 3_3:+2701775 Msa0438440:CDS
CCAACTTGTTAAAATCAATT+GGG 0.453481 3_3:-2701932 None:intergenic
TTAACAAGTTGGATGGAACT+TGG 0.462758 3_3:+2701943 Msa0438440:CDS
ATAAGGCAATAATATGCTAT+TGG 0.468591 3_3:+2704777 Msa0438440:three_prime_UTR
CTCCTATTATTAATGCATAG+TGG 0.475506 3_3:-2701496 None:intergenic
GACCGATACAAGAGTGAACT+TGG 0.486559 3_3:-2703575 None:intergenic
CACTCGATAAGCCGTGGTTG+AGG 0.492755 3_3:+2704687 Msa0438440:three_prime_UTR
GGATACAGTACTTGAAAGAA+AGG 0.499312 3_3:-2702026 None:intergenic
AGATTGCATAGCCATGGAAA+TGG 0.503286 3_3:-2701566 None:intergenic
CAAAGAACGCCGCGAGCGTA+AGG 0.505693 3_3:+2701374 Msa0438440:five_prime_UTR
TGGTTGAGGAATTGGACATA+TGG 0.507094 3_3:+2704701 Msa0438440:three_prime_UTR
TTATTCGCAATGTTGTCCGC+TGG 0.516151 3_3:+2702190 Msa0438440:CDS
CAAAGCTCAATTTCCCGTGA+GGG 0.519679 3_3:+2704403 Msa0438440:CDS
AAATATTAGTGAACAACTGC+AGG 0.525549 3_3:+2704073 Msa0438440:CDS
TATGCAATCTGCTGTTACCC+AGG 0.526237 3_3:+2701579 Msa0438440:CDS
ATTGCGAATAACACCTCCAT+TGG 0.531951 3_3:-2702178 None:intergenic
AAGGAAGATTAGCAGCAGCT+TGG 0.532811 3_3:-2702007 None:intergenic
CACCTCCATTGGAGCTATCA+CGG 0.533190 3_3:-2702167 None:intergenic
TGCCAAGTTCACTCTTGTAT+CGG 0.542599 3_3:+2703573 Msa0438440:CDS
ATGGAGAGGAAGAAATAGAC+TGG 0.545081 3_3:+2704720 Msa0438440:three_prime_UTR
GGAACAAGAAGGTGCTACAT+TGG 0.551537 3_3:+2703543 Msa0438440:intron
GAAATCAAAATCCATTTCCA+TGG 0.552738 3_3:+2701555 Msa0438440:CDS
AACAGCAGATTGCATAGCCA+TGG 0.553271 3_3:-2701572 None:intergenic
CGTAAGGAGTGTACCAGAGA+AGG 0.555677 3_3:+2701390 Msa0438440:five_prime_UTR
GTCAGGTGAATGTGGAAGGA+AGG 0.565736 3_3:+2701898 Msa0438440:intron
TTCTGTCAGGTGAATGTGGA+AGG 0.566123 3_3:+2701894 Msa0438440:intron
TACCTTCCAGGATCCCTCAC+GGG 0.569268 3_3:-2704416 None:intergenic
CTACTTCTGTCAGGTGAATG+TGG 0.570625 3_3:+2701890 Msa0438440:intron
TTGGATTGTAGGGAATCAGT+AGG 0.573551 3_3:+2704508 Msa0438440:intron
GATTGTAGGGAATCAGTAGG+AGG 0.575346 3_3:+2704511 Msa0438440:intron
GAATGCCGTGATAGCTCCAA+TGG 0.576112 3_3:+2702162 Msa0438440:CDS
AAGGAACGAGAAGCTTAGCT+TGG 0.578059 3_3:+2701409 Msa0438440:five_prime_UTR
GAAATTGAGCTTTGAAAGCA+CGG 0.585966 3_3:-2704394 None:intergenic
GAATGTGGAAGGAAGGAACA+TGG 0.586118 3_3:+2701905 Msa0438440:CDS
TCAATAGAAGAACGTTGAAG+AGG 0.588804 3_3:-2701773 None:intergenic
TGATTACCTCTTGAAACTGA+AGG 0.594547 3_3:-2703609 None:intergenic
TATTTACCTTCAGTTTCAAG+AGG 0.595839 3_3:+2703603 Msa0438440:CDS
ATTATTTGAGCTGTGAATTG+TGG 0.600446 3_3:+2704952 Msa0438440:three_prime_UTR
TTCCCGTGAGGGATCCTGGA+AGG 0.606634 3_3:+2704414 Msa0438440:CDS
CTGGAGGCCTATAGTCCACA+AGG 0.607285 3_3:+2704739 Msa0438440:three_prime_UTR
ATACCTTCCAGGATCCCTCA+CGG 0.609419 3_3:-2704417 None:intergenic
TTATTAATGCATAGTGGTGG+TGG 0.610336 3_3:-2701490 None:intergenic
ACAAATTAGGAATGCTCCAG+CGG 0.613575 3_3:-2702206 None:intergenic
TCTCTCCAAGACACACAAAG+AGG 0.636026 3_3:+2701737 Msa0438440:CDS
TGCAAACTTATAAAAGATCG+TGG 0.636201 3_3:-2704119 None:intergenic
TCAAAGCTCAATTTCCCGTG+AGG 0.649088 3_3:+2704402 Msa0438440:CDS
TGGTACACTCCTTACGCTCG+CGG 0.649440 3_3:-2701383 None:intergenic
GAGGAATTGGACATATGGAG+AGG 0.653797 3_3:+2704706 Msa0438440:three_prime_UTR
CTATTATTAATGCATAGTGG+TGG 0.657145 3_3:-2701493 None:intergenic
AATGTGGAAGGAAGGAACAT+GGG 0.663999 3_3:+2701906 Msa0438440:CDS
CTCCTCCTCCACCAACAGCA+CGG 0.664017 3_3:-2704576 None:intergenic
CAGTAACACTCGATAAGCCG+TGG 0.675508 3_3:+2704681 Msa0438440:three_prime_UTR
TATGTCCAATTCCTCAACCA+CGG 0.683624 3_3:-2704698 None:intergenic
ACATTGGTGCAGGAACAAGA+AGG 0.688213 3_3:+2703532 Msa0438440:intron
ACAATGATGAGAATTCCTTG+TGG 0.696408 3_3:-2704754 None:intergenic
GAGAGGAAGAAATAGACTGG+AGG 0.707122 3_3:+2704723 Msa0438440:three_prime_UTR
TGCCGTGATAGCTCCAATGG+AGG 0.729113 3_3:+2702165 Msa0438440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAACATGTAAAAAAA+TGG + chr3_3:2703319-2703338 Msa0438440:intron 10.0%
!! ATATAATAAAATATGGAAAT+GGG - chr3_3:2703811-2703830 None:intergenic 10.0%
!! AAGAAAGTGAAAAATAAAAA+TGG - chr3_3:2702099-2702118 None:intergenic 15.0%
!! AATTATATGTTGCAAAATAT+CGG - chr3_3:2703694-2703713 None:intergenic 15.0%
!!! TTCTCTTGTTATTAATTAAA+AGG + chr3_3:2703718-2703737 Msa0438440:intron 15.0%
!! TATAATAAAATATGGAAATG+GGG - chr3_3:2703810-2703829 None:intergenic 15.0%
!! CATATAATAAAATATGGAAA+TGG - chr3_3:2703812-2703831 None:intergenic 15.0%
!!! CATTTCCATATTTTATTATA+TGG + chr3_3:2703810-2703829 Msa0438440:intron 15.0%
!! GTAAACCATATAATAAAATA+TGG - chr3_3:2703818-2703837 None:intergenic 15.0%
!! ATTATATTATCTGAGTTATT+TGG + chr3_3:2704534-2704553 Msa0438440:CDS 15.0%
!! AATAAATAAAAACTGTGTGA+TGG + chr3_3:2701351-2701370 Msa0438440:five_prime_UTR 20.0%
!!! TCATCATTCTTTAATTTTGA+AGG + chr3_3:2701670-2701689 Msa0438440:intron 20.0%
!! AGTAAGAAAGTAAAAAGTAA+AGG - chr3_3:2702243-2702262 None:intergenic 20.0%
!!! TTTCACAGTTTTTATCTTAA+AGG + chr3_3:2702672-2702691 Msa0438440:intron 20.0%
!!! TTCACAGTTTTTATCTTAAA+GGG + chr3_3:2702673-2702692 Msa0438440:intron 20.0%
!! AAATAGTATCATTACTCAAA+AGG + chr3_3:2702720-2702739 Msa0438440:intron 20.0%
!!! CTTGTTATTAATTAAAAGGT+TGG + chr3_3:2703722-2703741 Msa0438440:intron 20.0%
!!! TTTTCTTAATCTTAATGATG+GGG - chr3_3:2703937-2703956 None:intergenic 20.0%
!!! CTTTTCTTAATCTTAATGAT+GGG - chr3_3:2703938-2703957 None:intergenic 20.0%
!! GAATTAATTAGTGTCTTTAT+TGG + chr3_3:2704462-2704481 Msa0438440:intron 20.0%
!!! AATTCATTTTATTTGAAGCT+TGG + chr3_3:2705000-2705019 Msa0438440:three_prime_UTR 20.0%
! ACAGTTACAATGTTAATAGA+AGG + chr3_3:2701533-2701552 Msa0438440:CDS 25.0%
! CTATGTATGCATAATTAGAA+TGG - chr3_3:2701618-2701637 None:intergenic 25.0%
! CATACATAGATAGATTGATT+GGG + chr3_3:2701629-2701648 Msa0438440:intron 25.0%
!!! CCAACTTGTTAAAATCAATT+GGG - chr3_3:2701935-2701954 None:intergenic 25.0%
!!! TCCAACTTGTTAAAATCAAT+TGG - chr3_3:2701936-2701955 None:intergenic 25.0%
!!! ATTGATTTTAACAAGTTGGA+TGG + chr3_3:2701936-2701955 Msa0438440:CDS 25.0%
! AAATGGTAAGAAAGAAAAGA+GGG - chr3_3:2702082-2702101 None:intergenic 25.0%
! AAAATGGTAAGAAAGAAAAG+AGG - chr3_3:2702083-2702102 None:intergenic 25.0%
! AAGAATGATCATAGTTATCT+GGG - chr3_3:2702304-2702323 None:intergenic 25.0%
! TAAGAATGATCATAGTTATC+TGG - chr3_3:2702305-2702324 None:intergenic 25.0%
! GAATAATCAAGTATGAATAG+AGG - chr3_3:2702388-2702407 None:intergenic 25.0%
! TATATAAGTATACTTCATCC+TGG + chr3_3:2702535-2702554 Msa0438440:intron 25.0%
!!! AATCTAGTTCCTTTTATTCT+AGG + chr3_3:2702755-2702774 Msa0438440:intron 25.0%
! AATAATATTCCACTTCTCAA+AGG - chr3_3:2702881-2702900 None:intergenic 25.0%
! GAATATTATTAAGCACTAGA+GGG + chr3_3:2702891-2702910 Msa0438440:intron 25.0%
! TTAGCTCATTAATATCTTCT+AGG + chr3_3:2703051-2703070 Msa0438440:intron 25.0%
!! TAATATCTTCTAGGAGAATT+CGG + chr3_3:2703060-2703079 Msa0438440:intron 25.0%
! ATATCTAAATGTTCTCAAGA+TGG - chr3_3:2703268-2703287 None:intergenic 25.0%
! ACTTAAGCTTAATTAGTTCA+GGG - chr3_3:2703468-2703487 None:intergenic 25.0%
! GAAACTGAAGGTAAATATTT+CGG - chr3_3:2703600-2703619 None:intergenic 25.0%
!! GCATGAACATTTTATTACTT+TGG + chr3_3:2703641-2703660 Msa0438440:intron 25.0%
!! AATCTGATTTGTCATTATGA+TGG + chr3_3:2703891-2703910 Msa0438440:intron 25.0%
!! CCTTTTCTTAATCTTAATGA+TGG - chr3_3:2703939-2703958 None:intergenic 25.0%
! CCATCATTAAGATTAAGAAA+AGG + chr3_3:2703936-2703955 Msa0438440:intron 25.0%
! ACAAATGAGCAATTTATAAC+TGG + chr3_3:2704030-2704049 Msa0438440:intron 25.0%
! AAATGCAACAGATTAAACTA+CGG - chr3_3:2704155-2704174 None:intergenic 25.0%
! TCATAAGTTATTAGTGTCAA+TGG - chr3_3:2704220-2704239 None:intergenic 25.0%
!! TTTGGTGATATATTTGTGAA+CGG + chr3_3:2704265-2704284 Msa0438440:intron 25.0%
!! TTTGGATGATAATATGCTTT+TGG + chr3_3:2704552-2704571 Msa0438440:CDS 25.0%
!! TTGGATGATAATATGCTTTT+GGG + chr3_3:2704553-2704572 Msa0438440:CDS 25.0%
! ATAAGGCAATAATATGCTAT+TGG + chr3_3:2704777-2704796 Msa0438440:three_prime_UTR 25.0%
!!! TATTTGAACTTGCTACTTTT+TGG + chr3_3:2704808-2704827 Msa0438440:three_prime_UTR 25.0%
! ATAATGTGTTCTTTAATTGC+TGG - chr3_3:2704937-2704956 None:intergenic 25.0%
CTATTATTAATGCATAGTGG+TGG - chr3_3:2701496-2701515 None:intergenic 30.0%
CACCACTATGCATTAATAAT+AGG + chr3_3:2701494-2701513 Msa0438440:CDS 30.0%
CTCCTATTATTAATGCATAG+TGG - chr3_3:2701499-2701518 None:intergenic 30.0%
GAAATCAAAATCCATTTCCA+TGG + chr3_3:2701555-2701574 Msa0438440:CDS 30.0%
GCATACATAGATAGATTGAT+TGG + chr3_3:2701628-2701647 Msa0438440:intron 30.0%
ATAATCATTCTACTTCTGTC+AGG + chr3_3:2701881-2701900 Msa0438440:intron 30.0%
!! CCCAATTGATTTTAACAAGT+TGG + chr3_3:2701932-2701951 Msa0438440:CDS 30.0%
AAAGAAAAGAGGGAAAATGA+TGG - chr3_3:2702072-2702091 None:intergenic 30.0%
GGAATTACCTCAAACAAATT+AGG - chr3_3:2702222-2702241 None:intergenic 30.0%
AGAATGATCATAGTTATCTG+GGG - chr3_3:2702303-2702322 None:intergenic 30.0%
ATAATATTGCGGAAATTGAG+GGG - chr3_3:2702349-2702368 None:intergenic 30.0%
CATAATATTGCGGAAATTGA+GGG - chr3_3:2702350-2702369 None:intergenic 30.0%
CTAAACTGTGCATAATATTG+CGG - chr3_3:2702360-2702379 None:intergenic 30.0%
!!! TTGCTAGGATTTGGTTTTTT+AGG + chr3_3:2702494-2702513 Msa0438440:intron 30.0%
AGTTGTGTAAATTAAAGACC+CGG + chr3_3:2702627-2702646 Msa0438440:intron 30.0%
!! TTAGTTTTTCCAACCATCTA+AGG - chr3_3:2702819-2702838 None:intergenic 30.0%
GATGGTTGGAAAAACTAAAT+TGG + chr3_3:2702821-2702840 Msa0438440:intron 30.0%
GGATGAAATACTTATTCTTG+AGG + chr3_3:2702842-2702861 Msa0438440:intron 30.0%
GGAATATTATTAAGCACTAG+AGG + chr3_3:2702890-2702909 Msa0438440:intron 30.0%
TCTTTGCTCGTAACTTATAT+TGG - chr3_3:2702933-2702952 None:intergenic 30.0%
TAAGTTACGAGCAAAGAAAA+CGG + chr3_3:2702936-2702955 Msa0438440:intron 30.0%
TGACCATATAGAAAACAACT+AGG + chr3_3:2703113-2703132 Msa0438440:intron 30.0%
GACCATATAGAAAACAACTA+GGG + chr3_3:2703114-2703133 Msa0438440:intron 30.0%
!! GGAATTTTGAGAAATCACAA+TGG - chr3_3:2703157-2703176 None:intergenic 30.0%
!! CAGCTTTTAGAAATCAGAAA+GGG - chr3_3:2703390-2703409 None:intergenic 30.0%
!! ACAGCTTTTAGAAATCAGAA+AGG - chr3_3:2703391-2703410 None:intergenic 30.0%
CTTAAGCTTAATTAGTTCAG+GGG - chr3_3:2703467-2703486 None:intergenic 30.0%
CACTTAAGCTTAATTAGTTC+AGG - chr3_3:2703469-2703488 None:intergenic 30.0%
TTCTTTGGTTGAGATAACAT+TGG + chr3_3:2703516-2703535 Msa0438440:intron 30.0%
TATTTACCTTCAGTTTCAAG+AGG + chr3_3:2703603-2703622 Msa0438440:CDS 30.0%
TATCAAAAGCAAATTGAACG+TGG - chr3_3:2703757-2703776 None:intergenic 30.0%
TATTACTCCTCAAGAAATGT+TGG + chr3_3:2703838-2703857 Msa0438440:intron 30.0%
GAGCATAAAACATATATGCT+AGG + chr3_3:2703860-2703879 Msa0438440:intron 30.0%
AAATATTAGTGAACAACTGC+AGG + chr3_3:2704073-2704092 Msa0438440:CDS 30.0%
TGCAAACTTATAAAAGATCG+TGG - chr3_3:2704122-2704141 None:intergenic 30.0%
! ACGATCTTTTATAAGTTTGC+AGG + chr3_3:2704121-2704140 Msa0438440:CDS 30.0%
TCTGCATCAAATCAAAACTT+TGG + chr3_3:2704247-2704266 Msa0438440:intron 30.0%
CATGCAGATATATTACCATT+AGG - chr3_3:2704291-2704310 None:intergenic 30.0%
AATGGTAATATATCTGCATG+AGG + chr3_3:2704291-2704310 Msa0438440:intron 30.0%
! CTGGAAGGTATATATATGAT+GGG + chr3_3:2704429-2704448 Msa0438440:intron 30.0%
! TTACGAGTATAATGCTCTTT+TGG + chr3_3:2704489-2704508 Msa0438440:intron 30.0%
! ATAATGCTCTTTTGGATTGT+AGG + chr3_3:2704497-2704516 Msa0438440:intron 30.0%
! TAATGCTCTTTTGGATTGTA+GGG + chr3_3:2704498-2704517 Msa0438440:intron 30.0%
GGAATTCTCATCATTGTATA+AGG + chr3_3:2704760-2704779 Msa0438440:three_prime_UTR 30.0%
ATTATTTGAGCTGTGAATTG+TGG + chr3_3:2704952-2704971 Msa0438440:three_prime_UTR 30.0%
!! TTGAGTTGGAGAAATGGATT+TGG + chr3_3:2701435-2701454 Msa0438440:exon 35.0%
TTATTAATGCATAGTGGTGG+TGG - chr3_3:2701493-2701512 None:intergenic 35.0%
CATTGTAACTGTAGAGTGTA+TGG - chr3_3:2701525-2701544 None:intergenic 35.0%
TCAATAGAAGAACGTTGAAG+AGG - chr3_3:2701776-2701795 None:intergenic 35.0%
TCTTCAACGTTCTTCTATTG+AGG + chr3_3:2701775-2701794 Msa0438440:CDS 35.0%
! TTAACAAGTTGGATGGAACT+TGG + chr3_3:2701943-2701962 Msa0438440:CDS 35.0%
GGATACAGTACTTGAAAGAA+AGG - chr3_3:2702029-2702048 None:intergenic 35.0%
GTAAGGAAGGAAGAAATAGA+TGG - chr3_3:2702050-2702069 None:intergenic 35.0%
AAAGAGGGAAAATGATGGTA+AGG - chr3_3:2702067-2702086 None:intergenic 35.0%
!! GAGCATTCCTAATTTGTTTG+AGG + chr3_3:2702212-2702231 Msa0438440:CDS 35.0%
TATCTGGGGAAATCAAAAGT+AGG - chr3_3:2702289-2702308 None:intergenic 35.0%
TAATATTGCGGAAATTGAGG+GGG - chr3_3:2702348-2702367 None:intergenic 35.0%
GCATAATATTGCGGAAATTG+AGG - chr3_3:2702351-2702370 None:intergenic 35.0%
TTCTTTCTTAGAGTTCAAGC+TGG + chr3_3:2702405-2702424 Msa0438440:intron 35.0%
GTTGTGTAAATTAAAGACCC+GGG + chr3_3:2702628-2702647 Msa0438440:intron 35.0%
!! TTTTCCAACCATCTAAGGTT+AGG - chr3_3:2702814-2702833 None:intergenic 35.0%
ATTATTAAGCACTAGAGGGT+TGG + chr3_3:2702895-2702914 Msa0438440:intron 35.0%
AAGTTACGAGCAAAGAAAAC+GGG + chr3_3:2702937-2702956 Msa0438440:intron 35.0%
TCACGCTTATTTGATTCTCA+AGG + chr3_3:2702990-2703009 Msa0438440:intron 35.0%
TATTTGATTCTCAAGGAGCA+TGG + chr3_3:2702997-2703016 Msa0438440:intron 35.0%
AGCTAATGTACTTTCCAAAC+TGG - chr3_3:2703037-2703056 None:intergenic 35.0%
!! CTCCCTAGTTGTTTTCTATA+TGG - chr3_3:2703119-2703138 None:intergenic 35.0%
AAATGTTCTCAAGATGGATG+TGG - chr3_3:2703262-2703281 None:intergenic 35.0%
! CTATATCAAGTTAGCCTCAA+CGG + chr3_3:2703351-2703370 Msa0438440:intron 35.0%
GATTTAAAGATGAACCGTTG+AGG - chr3_3:2703368-2703387 None:intergenic 35.0%
! CAGCTTGAACATGTTTTCTT+TGG + chr3_3:2703501-2703520 Msa0438440:intron 35.0%
TGATTACCTCTTGAAACTGA+AGG - chr3_3:2703612-2703631 None:intergenic 35.0%
TAAAATATGGAAATGGGGCA+TGG - chr3_3:2703805-2703824 None:intergenic 35.0%
TTATGCTCCAACATTTCTTG+AGG - chr3_3:2703848-2703867 None:intergenic 35.0%
TATATTTGTGAACGGCCTAA+TGG + chr3_3:2704273-2704292 Msa0438440:intron 35.0%
!! GAAATTGAGCTTTGAAAGCA+CGG - chr3_3:2704397-2704416 None:intergenic 35.0%
CCATCATATATATACCTTCC+AGG - chr3_3:2704431-2704450 None:intergenic 35.0%
! CCTGGAAGGTATATATATGA+TGG + chr3_3:2704428-2704447 Msa0438440:intron 35.0%
ACAATGATGAGAATTCCTTG+TGG - chr3_3:2704757-2704776 None:intergenic 35.0%
!!! ACTTGCTACTTTTTGGTTGA+AGG + chr3_3:2704815-2704834 Msa0438440:three_prime_UTR 35.0%
!!! CTTGCTACTTTTTGGTTGAA+GGG + chr3_3:2704816-2704835 Msa0438440:three_prime_UTR 35.0%
!!! TTGCTACTTTTTGGTTGAAG+GGG + chr3_3:2704817-2704836 Msa0438440:three_prime_UTR 35.0%
AGATTGCATAGCCATGGAAA+TGG - chr3_3:2701569-2701588 None:intergenic 40.0%
ATGGAAACCTTACCTTACCT+GGG - chr3_3:2701599-2701618 None:intergenic 40.0%
AATGGAAACCTTACCTTACC+TGG - chr3_3:2701600-2701619 None:intergenic 40.0%
AATGTGGAAGGAAGGAACAT+GGG + chr3_3:2701906-2701925 Msa0438440:CDS 40.0%
TGGAAGAGAATGAGAACATC+AGG - chr3_3:2701990-2702009 None:intergenic 40.0%
AGGGAAAATGATGGTAAGGA+AGG - chr3_3:2702063-2702082 None:intergenic 40.0%
CTTTCCTTCTGTCATGAGAT+AGG + chr3_3:2702116-2702135 Msa0438440:intron 40.0%
ATTGCGAATAACACCTCCAT+TGG - chr3_3:2702181-2702200 None:intergenic 40.0%
ACAAATTAGGAATGCTCCAG+CGG - chr3_3:2702209-2702228 None:intergenic 40.0%
!! GGAACAAGTTGATTGCAAGA+AGG - chr3_3:2702268-2702287 None:intergenic 40.0%
GAAACTGCATATGCATTGCT+AGG + chr3_3:2702479-2702498 Msa0438440:intron 40.0%
GCATATGCATTGCTAGGATT+TGG + chr3_3:2702485-2702504 Msa0438440:intron 40.0%
AGTATACTTCATCCTGGACT+AGG + chr3_3:2702541-2702560 Msa0438440:intron 40.0%
ACGTTATTAGTTCCTAGTCC+AGG - chr3_3:2702556-2702575 None:intergenic 40.0%
AGTTACGAGCAAAGAAAACG+GGG + chr3_3:2702938-2702957 Msa0438440:intron 40.0%
CAGAGAATAACTGTCCAGTT+TGG + chr3_3:2703020-2703039 Msa0438440:intron 40.0%
TCTCAAAATTCCTCCACAAG+AGG + chr3_3:2703165-2703184 Msa0438440:intron 40.0%
TGGATGGATCTCATTCTACT+AGG - chr3_3:2703242-2703261 None:intergenic 40.0%
AAACATGTTCAAGCTGACGA+AGG - chr3_3:2703497-2703516 None:intergenic 40.0%
TGCCAAGTTCACTCTTGTAT+CGG + chr3_3:2703573-2703592 Msa0438440:CDS 40.0%
GATGGGGAAGTGAAATTTCA+GGG - chr3_3:2703921-2703940 None:intergenic 40.0%
TGATGGGGAAGTGAAATTTC+AGG - chr3_3:2703922-2703941 None:intergenic 40.0%
AGCATCATACCAACCAAAGA+AGG - chr3_3:2704004-2704023 None:intergenic 40.0%
AAAGATCGTGGTAGTATTGC+TGG - chr3_3:2704110-2704129 None:intergenic 40.0%
TTGGATTGTAGGGAATCAGT+AGG + chr3_3:2704508-2704527 Msa0438440:intron 40.0%
TATGTCCAATTCCTCAACCA+CGG - chr3_3:2704701-2704720 None:intergenic 40.0%
TGGTTGAGGAATTGGACATA+TGG + chr3_3:2704701-2704720 Msa0438440:three_prime_UTR 40.0%
ATGGAGAGGAAGAAATAGAC+TGG + chr3_3:2704720-2704739 Msa0438440:three_prime_UTR 40.0%
! GAGAATTCCTTGTGGACTAT+AGG - chr3_3:2704749-2704768 None:intergenic 40.0%
!!! TACTTTTTGGTTGAAGGGGA+GGG + chr3_3:2704821-2704840 Msa0438440:three_prime_UTR 40.0%
TAAGCTTCTCGTTCCTTCTC+TGG - chr3_3:2701406-2701425 None:intergenic 45.0%
AAGGAACGAGAAGCTTAGCT+TGG + chr3_3:2701409-2701428 Msa0438440:five_prime_UTR 45.0%
!! TGGCAGTTGAGTTGGAGAAA+TGG + chr3_3:2701429-2701448 Msa0438440:exon 45.0%
AACAGCAGATTGCATAGCCA+TGG - chr3_3:2701575-2701594 None:intergenic 45.0%
TATGCAATCTGCTGTTACCC+AGG + chr3_3:2701579-2701598 Msa0438440:CDS 45.0%
AATCTGCTGTTACCCAGGTA+AGG + chr3_3:2701584-2701603 Msa0438440:intron 45.0%
TCTCTCCAAGACACACAAAG+AGG + chr3_3:2701737-2701756 Msa0438440:CDS 45.0%
AGAGTCCTCTTTGTGTGTCT+TGG - chr3_3:2701745-2701764 None:intergenic 45.0%
CTACTTCTGTCAGGTGAATG+TGG + chr3_3:2701890-2701909 Msa0438440:intron 45.0%
TTCTGTCAGGTGAATGTGGA+AGG + chr3_3:2701894-2701913 Msa0438440:intron 45.0%
GAATGTGGAAGGAAGGAACA+TGG + chr3_3:2701905-2701924 Msa0438440:CDS 45.0%
AAGGAAGATTAGCAGCAGCT+TGG - chr3_3:2702010-2702029 None:intergenic 45.0%
CCTTCTGTCATGAGATAGGT+CGG + chr3_3:2702120-2702139 Msa0438440:intron 45.0%
TTATTCGCAATGTTGTCCGC+TGG + chr3_3:2702190-2702209 Msa0438440:CDS 45.0%
CAACTTGTCTACTGCGATGA+AGG - chr3_3:2702612-2702631 None:intergenic 45.0%
TTAGCTAGCATACGCAATCC+CGG - chr3_3:2702649-2702668 None:intergenic 45.0%
CGTGCGACTCCTAGAATAAA+AGG - chr3_3:2702767-2702786 None:intergenic 45.0%
ACACCTAGCCTAACCTTAGA+TGG + chr3_3:2702803-2702822 Msa0438440:intron 45.0%
! CAACCATCTAAGGTTAGGCT+AGG - chr3_3:2702809-2702828 None:intergenic 45.0%
CTAGCCTAACCTTAGATGGT+TGG + chr3_3:2702807-2702826 Msa0438440:intron 45.0%
! TTGCTCTCACCTTTGAGAAG+TGG + chr3_3:2702869-2702888 Msa0438440:intron 45.0%
ACCACTTCTTTGCTCAACTC+GGG - chr3_3:2702971-2702990 None:intergenic 45.0%
GACCACTTCTTTGCTCAACT+CGG - chr3_3:2702972-2702991 None:intergenic 45.0%
CACAATGGCCACTTCATCAA+CGG - chr3_3:2703142-2703161 None:intergenic 45.0%
GTAGGGGATCTCATTCTACT+AGG - chr3_3:2703201-2703220 None:intergenic 45.0%
AATGAGATCCCCTACACAAG+AGG + chr3_3:2703206-2703225 Msa0438440:intron 45.0%
GTTCTCAAGATGGATGTGGA+TGG - chr3_3:2703258-2703277 None:intergenic 45.0%
ATGTTCAAGCTGACGAAGGA+AGG - chr3_3:2703493-2703512 None:intergenic 45.0%
GGTTGAGATAACATTGGTGC+AGG + chr3_3:2703522-2703541 Msa0438440:intron 45.0%
ACATTGGTGCAGGAACAAGA+AGG + chr3_3:2703532-2703551 Msa0438440:intron 45.0%
!! GGAACAAGAAGGTGCTACAT+TGG + chr3_3:2703543-2703562 Msa0438440:intron 45.0%
GACCGATACAAGAGTGAACT+TGG - chr3_3:2703578-2703597 None:intergenic 45.0%
GAATGCGACATTGCCTTCTT+TGG + chr3_3:2703988-2704007 Msa0438440:intron 45.0%
ATTTGTGTGCACTGTCGTAC+TGG + chr3_3:2704178-2704197 Msa0438440:intron 45.0%
TCAAAGCTCAATTTCCCGTG+AGG + chr3_3:2704402-2704421 Msa0438440:CDS 45.0%
CAAAGCTCAATTTCCCGTGA+GGG + chr3_3:2704403-2704422 Msa0438440:CDS 45.0%
GATTGTAGGGAATCAGTAGG+AGG + chr3_3:2704511-2704530 Msa0438440:intron 45.0%
ATAAGCCGTGGTTGAGGAAT+TGG + chr3_3:2704693-2704712 Msa0438440:three_prime_UTR 45.0%
GAGGAATTGGACATATGGAG+AGG + chr3_3:2704706-2704725 Msa0438440:three_prime_UTR 45.0%
GAGAGGAAGAAATAGACTGG+AGG + chr3_3:2704723-2704742 Msa0438440:three_prime_UTR 45.0%
!!! CTACTTTTTGGTTGAAGGGG+AGG + chr3_3:2704820-2704839 Msa0438440:three_prime_UTR 45.0%
! CGTAAGGAGTGTACCAGAGA+AGG + chr3_3:2701390-2701409 Msa0438440:five_prime_UTR 50.0%
! GCTTAGCTTGGCAGTTGAGT+TGG + chr3_3:2701421-2701440 Msa0438440:five_prime_UTR 50.0%
GCTGTTACCCAGGTAAGGTA+AGG + chr3_3:2701589-2701608 Msa0438440:intron 50.0%
GTCAGGTGAATGTGGAAGGA+AGG + chr3_3:2701898-2701917 Msa0438440:intron 50.0%
CCGACCTATCTCATGACAGA+AGG - chr3_3:2702123-2702142 None:intergenic 50.0%
GAATGCCGTGATAGCTCCAA+TGG + chr3_3:2702162-2702181 Msa0438440:CDS 50.0%
CACCTCCATTGGAGCTATCA+CGG - chr3_3:2702170-2702189 None:intergenic 50.0%
TAGCTAGCATACGCAATCCC+GGG - chr3_3:2702648-2702667 None:intergenic 50.0%
CGACACTTCCTCTTGTGTAG+GGG - chr3_3:2703217-2703236 None:intergenic 50.0%
GCGACACTTCCTCTTGTGTA+GGG - chr3_3:2703218-2703237 None:intergenic 50.0%
AGCGACACTTCCTCTTGTGT+AGG - chr3_3:2703219-2703238 None:intergenic 50.0%
GCGACATTGCCTTCTTTGGT+TGG + chr3_3:2703992-2704011 Msa0438440:intron 50.0%
ATACCTTCCAGGATCCCTCA+CGG - chr3_3:2704420-2704439 None:intergenic 50.0%
CAGTAACACTCGATAAGCCG+TGG + chr3_3:2704681-2704700 Msa0438440:three_prime_UTR 50.0%
TGGTACACTCCTTACGCTCG+CGG - chr3_3:2701386-2701405 None:intergenic 55.0%
TGCCGTGATAGCTCCAATGG+AGG + chr3_3:2702165-2702184 Msa0438440:CDS 55.0%
! GCCCGAGTTGAGCAAAGAAG+TGG + chr3_3:2702967-2702986 Msa0438440:intron 55.0%
! CTAGGGAGCCGTTGATGAAG+TGG + chr3_3:2703131-2703150 Msa0438440:intron 55.0%
AGCGACACTTCCTCTTGTGG+AGG - chr3_3:2703178-2703197 None:intergenic 55.0%
AGGAGCGACACTTCCTCTTG+TGG - chr3_3:2703181-2703200 None:intergenic 55.0%
CAATTTCCCGTGAGGGATCC+TGG + chr3_3:2704410-2704429 Msa0438440:CDS 55.0%
TACCTTCCAGGATCCCTCAC+GGG - chr3_3:2704419-2704438 None:intergenic 55.0%
! ATGCTTTTGGGCCGTGCTGT+TGG + chr3_3:2704565-2704584 Msa0438440:CDS 55.0%
CACTCGATAAGCCGTGGTTG+AGG + chr3_3:2704687-2704706 Msa0438440:three_prime_UTR 55.0%
CTGGAGGCCTATAGTCCACA+AGG + chr3_3:2704739-2704758 Msa0438440:three_prime_UTR 55.0%
CAAAGAACGCCGCGAGCGTA+AGG + chr3_3:2701374-2701393 Msa0438440:five_prime_UTR 60.0%
TTCCCGTGAGGGATCCTGGA+AGG + chr3_3:2704414-2704433 Msa0438440:CDS 60.0%
!! CTTTTGGGCCGTGCTGTTGG+TGG + chr3_3:2704568-2704587 Msa0438440:CDS 60.0%
CTCCTCCTCCACCAACAGCA+CGG - chr3_3:2704579-2704598 None:intergenic 60.0%
! TTGGGCCGTGCTGTTGGTGG+AGG + chr3_3:2704571-2704590 Msa0438440:CDS 65.0%
! GGCCGTGCTGTTGGTGGAGG+AGG + chr3_3:2704574-2704593 Msa0438440:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 2701342 2705029 2701342 ID=Msa0438440;Name=Msa0438440
chr3_3 mRNA 2701342 2705029 2701342 ID=Msa0438440-mRNA-1;Parent=Msa0438440;Name=Msa0438440-mRNA-1;_AED=0.32;_eAED=0.32;_QI=106|1|1|1|1|1|8|396|278
chr3_3 exon 2701342 2701600 2701342 ID=Msa0438440-mRNA-1:exon:650;Parent=Msa0438440-mRNA-1
chr3_3 exon 2701692 2701805 2701692 ID=Msa0438440-mRNA-1:exon:651;Parent=Msa0438440-mRNA-1
chr3_3 exon 2701903 2702037 2701903 ID=Msa0438440-mRNA-1:exon:652;Parent=Msa0438440-mRNA-1
chr3_3 exon 2702138 2702233 2702138 ID=Msa0438440-mRNA-1:exon:653;Parent=Msa0438440-mRNA-1
chr3_3 exon 2703544 2703624 2703544 ID=Msa0438440-mRNA-1:exon:654;Parent=Msa0438440-mRNA-1
chr3_3 exon 2704056 2704142 2704056 ID=Msa0438440-mRNA-1:exon:655;Parent=Msa0438440-mRNA-1
chr3_3 exon 2704380 2704435 2704380 ID=Msa0438440-mRNA-1:exon:656;Parent=Msa0438440-mRNA-1
chr3_3 exon 2704519 2705029 2704519 ID=Msa0438440-mRNA-1:exon:657;Parent=Msa0438440-mRNA-1
chr3_3 five_prime_UTR 2701342 2701447 2701342 ID=Msa0438440-mRNA-1:five_prime_utr;Parent=Msa0438440-mRNA-1
chr3_3 CDS 2701448 2701600 2701448 ID=Msa0438440-mRNA-1:cds;Parent=Msa0438440-mRNA-1
chr3_3 CDS 2701692 2701805 2701692 ID=Msa0438440-mRNA-1:cds;Parent=Msa0438440-mRNA-1
chr3_3 CDS 2701903 2702037 2701903 ID=Msa0438440-mRNA-1:cds;Parent=Msa0438440-mRNA-1
chr3_3 CDS 2702138 2702233 2702138 ID=Msa0438440-mRNA-1:cds;Parent=Msa0438440-mRNA-1
chr3_3 CDS 2703544 2703624 2703544 ID=Msa0438440-mRNA-1:cds;Parent=Msa0438440-mRNA-1
chr3_3 CDS 2704056 2704142 2704056 ID=Msa0438440-mRNA-1:cds;Parent=Msa0438440-mRNA-1
chr3_3 CDS 2704380 2704435 2704380 ID=Msa0438440-mRNA-1:cds;Parent=Msa0438440-mRNA-1
chr3_3 CDS 2704519 2704633 2704519 ID=Msa0438440-mRNA-1:cds;Parent=Msa0438440-mRNA-1
chr3_3 three_prime_UTR 2704634 2705029 2704634 ID=Msa0438440-mRNA-1:three_prime_utr;Parent=Msa0438440-mRNA-1
Gene Sequence

>Msa0438440

ATGGATTTGGCTCTCAATTTCAATTTTAGTTTCAGTTCATCACCACCACCACTATGCATTAATAATAGGAGAAGCCATACACTCTACAGTTACAATGTTAATAGAAGGAAATCAAAATCCATTTCCATGGCTATGCAATCTGCTGTTACCCAGGCATATGATTCTGAGCTAGAAAACAAGAAGCACGAGCTTTTAACATCTCTCCAAGACACACAAAGAGGACTCTTAACAACTCCTCTTCAACGTTCTTCTATTGAGGAAGCTCTTGTGAATGTGGAAGGAAGGAACATGGGTCACCCAATTGATTTTAACAAGTTGGATGGAACTTGGCGCTTGCAATATACTTCTGCTCCTGATGTTCTCATTCTCTTCCAAGCTGCTGCTAATCTTCCTTTCTTTCAAGTCGGACAAATATTTCAGAAATTTGAATGCCGTGATAGCTCCAATGGAGGTGTTATTCGCAATGTTGTCCGCTGGAGCATTCCTAATTTGTTTGAGGAACAAGAAGGTGCTACATTGGTTGTATCTGCCAAGTTCACTCTTGTATCGGTCCGAAATATTTACCTTCAGTTTCAAGAGATCTCAGTTCAAGATATAAATATTAGTGAACAACTGCAGGCTCTAATATCTCCAGCAATACTACCACGATCTTTTATAAGTTTGCAGATATTGCAATATCTCCGTGCTTTCAAAGCTCAATTTCCCGTGAGGGATCCTGGAAGGGAATCAGTAGGAGGATTATATTATCTGAGTTATTTGGATGATAATATGCTTTTGGGCCGTGCTGTTGGTGGAGGAGGAGTATTTGTGTTTACGAGAGCTCAATCACTTTACTGA

Protein sequence

>Msa0438440

MDLALNFNFSFSSSPPPLCINNRRSHTLYSYNVNRRKSKSISMAMQSAVTQAYDSELENKKHELLTSLQDTQRGLLTTPLQRSSIEEALVNVEGRNMGHPIDFNKLDGTWRLQYTSAPDVLILFQAAANLPFFQVGQIFQKFECRDSSNGGVIRNVVRWSIPNLFEEQEGATLVVSAKFTLVSVRNIYLQFQEISVQDINISEQLQALISPAILPRSFISLQILQYLRAFKAQFPVRDPGRESVGGLYYLSYLDDNMLLGRAVGGGGVFVFTRAQSLY*