AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0498320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0498320 MtrunA17_Chr3g0095661 98.734 395 5 0 1 395 1 395 0.0 810
Msa0498320 MtrunA17_Chr5g0442671 79.648 398 68 4 1 395 1 388 0.0 648
Msa0498320 MtrunA17_Chr5g0433601 73.669 357 85 2 37 388 77 429 0.0 540
Msa0498320 MtrunA17_Chr3g0121311 69.395 281 86 0 98 378 87 367 7.10e-153 437
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0498320 AT5G17230.2 76.136 352 79 2 29 378 59 407 0.0 551
Msa0498320 AT5G17230.1 76.136 352 79 2 29 378 59 407 0.0 551
Msa0498320 AT5G17230.4 76.136 352 79 2 29 378 59 407 0.0 551
Msa0498320 AT5G17230.3 73.025 367 79 3 29 378 59 422 0.0 542

Find 95 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGTCTGGTGTTCTTCTT+TGG 0.203427 3_4:-34348865 Msa0498320:CDS
TGTTCATCTTGTAGTCATTT+TGG 0.206973 3_4:+34345744 None:intergenic
CCTTCAATCATGTCTTTAAA+TGG 0.223849 3_4:+34346626 None:intergenic
AGAGAATGCCATTTCCTTAA+TGG 0.264096 3_4:-34348825 Msa0498320:CDS
GAGAATGCCATTTCCTTAAT+GGG 0.302605 3_4:-34348824 Msa0498320:CDS
CTAATTAGACATACCGTAAA+TGG 0.307530 3_4:+34347656 None:intergenic
CAGCAAGTAGATGGCCTGTT+TGG 0.307680 3_4:-34345918 Msa0498320:CDS
GTGAGGCAATTAAATGGTTT+AGG 0.310639 3_4:+34348992 None:intergenic
TTATCACTTCCTGTTGCTCT+TGG 0.315689 3_4:-34345796 Msa0498320:CDS
TTCAAAAGCATTGAATAGTT+TGG 0.322489 3_4:-34345710 Msa0498320:three_prime_UTR
GATGCTCTCTGTTGAAGCTT+TGG 0.337629 3_4:+34346481 None:intergenic
CTTATGAGTGTTCCTGTAAT+GGG 0.347887 3_4:-34346518 Msa0498320:CDS
GCCATTTCCTTAATGGGTCT+TGG 0.351168 3_4:-34348818 Msa0498320:CDS
TGTGGTTCTATCCCCATTAC+AGG 0.351831 3_4:+34346506 None:intergenic
AGGAGGTTTAGACATTGTTC+TGG 0.362139 3_4:-34348773 Msa0498320:CDS
CATGAAATTGCGCCATTTGT+CGG 0.363909 3_4:+34346008 None:intergenic
TTTAGGGGACAGAAAGTGTT+GGG 0.364696 3_4:-34345522 Msa0498320:three_prime_UTR
AGAAGAACACCAGACATCTT+AGG 0.368071 3_4:+34348869 None:intergenic
GGGCATCTTTGCTGTTGTAT+AGG 0.372606 3_4:-34345897 Msa0498320:CDS
TCCCATCTGTCCAAAGCCTT+TGG 0.374486 3_4:+34347492 None:intergenic
CTATATTGCTACTATGTTGC+TGG 0.386898 3_4:-34346551 Msa0498320:CDS
GATGTCTGGTGTTCTTCTTT+GGG 0.389571 3_4:-34348864 Msa0498320:CDS
ACACATCACACCAAAGGCTT+TGG 0.390627 3_4:-34347502 Msa0498320:CDS
CAGCAACATAGTAGCAATAT+AGG 0.392016 3_4:+34346552 None:intergenic
AGCAAGTAGATGGCCTGTTT+GGG 0.395898 3_4:-34345917 Msa0498320:CDS
TAACCTACCTGTATATCAAC+AGG 0.395934 3_4:+34347390 None:intergenic
AAAGCCATATGGGCCATTTA+CGG 0.401396 3_4:-34347669 Msa0498320:intron
CTCTCCTCTGAGGATCTTGT+AGG 0.415075 3_4:+34348713 None:intergenic
GCTCTTGGAATAGCAACGTT+TGG 0.415641 3_4:-34345781 Msa0498320:CDS
TTGGTGAAATCACCTTCAAT+AGG 0.419066 3_4:+34348602 None:intergenic
TCCAAGACCCATTAAGGAAA+TGG 0.420248 3_4:+34348817 None:intergenic
GAAATATTATTCTAAATTTG+AGG 0.423196 3_4:+34349014 None:intergenic
AGCTCAGTTCAGCAAGTAGA+TGG 0.427080 3_4:-34345927 Msa0498320:CDS
GTACCTTCCGCAAGATGAAT+TGG 0.429606 3_4:-34346076 Msa0498320:CDS
TGTTCTATTCCTAAGATGTC+TGG 0.436560 3_4:-34348878 Msa0498320:exon
CCTTATGAGTGTTCCTGTAA+TGG 0.441118 3_4:-34346519 Msa0498320:CDS
TACTATGTTGCTGGGACTGT+GGG 0.445506 3_4:-34346542 Msa0498320:CDS
ACTATAATAACTTCACCAAA+CGG 0.449049 3_4:-34345846 Msa0498320:CDS
CACCAAAGGCTTTGGACAGA+TGG 0.455213 3_4:-34347494 Msa0498320:CDS
CATACCGTAAATGGCCCATA+TGG 0.458649 3_4:+34347665 None:intergenic
AAAGTACCCTGTTGATATAC+AGG 0.460407 3_4:-34347397 Msa0498320:intron
TATTGTTTGTTTCCGAGATA+CGG 0.461483 3_4:-34345555 Msa0498320:three_prime_UTR
CCATTTAAAGACATGATTGA+AGG 0.461831 3_4:-34346626 Msa0498320:CDS
GTTCTTCTTTGGGTGAATTG+TGG 0.464290 3_4:-34348854 Msa0498320:CDS
GGTGTGATGTGTGAAGCATT+AGG 0.465088 3_4:+34347513 None:intergenic
AAGAGAGAAGAAAAGCCATA+TGG 0.465862 3_4:-34347680 Msa0498320:CDS
GTTGCTATTCCAAGAGCAAC+AGG 0.466089 3_4:+34345787 None:intergenic
AACAGCAAAGATGCCCAAAC+AGG 0.470763 3_4:+34345904 None:intergenic
CTATAATAACTTCACCAAAC+GGG 0.476146 3_4:-34345845 Msa0498320:CDS
TTGGATGATAAGCCTATTGA+AGG 0.477265 3_4:-34348614 Msa0498320:CDS
TACAATGCTGCATTGGCACT+TGG 0.478711 3_4:-34346458 Msa0498320:CDS
CTACTATGTTGCTGGGACTG+TGG 0.486893 3_4:-34346543 Msa0498320:CDS
TATATTGCTACTATGTTGCT+GGG 0.488882 3_4:-34346550 Msa0498320:CDS
GCAGCATCATACATATCATA+AGG 0.497935 3_4:+34347438 None:intergenic
TCTGTTGAAGCTTTGGATTG+TGG 0.503008 3_4:+34346488 None:intergenic
AAAACACACTTTCCGTATCT+CGG 0.503216 3_4:+34345543 None:intergenic
TTGAAGGTGATTTCACCAAT+GGG 0.504638 3_4:-34348598 Msa0498320:CDS
ATTTCCTTAATGGGTCTTGG+AGG 0.509366 3_4:-34348815 Msa0498320:CDS
CAGAAGAACAGATGAGTTAG+TGG 0.511011 3_4:-34347541 Msa0498320:CDS
CCATTACAGGAACACTCATA+AGG 0.511875 3_4:+34346519 None:intergenic
CAAGATGAATTGGCACAAGC+TGG 0.511937 3_4:-34346066 Msa0498320:CDS
AAGACATGATTGAAGGGATG+AGG 0.513888 3_4:-34346619 Msa0498320:CDS
ATTGAAGGTGATTTCACCAA+TGG 0.516585 3_4:-34348599 Msa0498320:CDS
CATGATTGAAGGGATGAGGC+TGG 0.519563 3_4:-34346615 Msa0498320:CDS
GAGGCAGAGTAACCGACAAA+TGG 0.531514 3_4:-34346020 Msa0498320:CDS
CTTCAACATTACTAAACTTG+AGG 0.532257 3_4:+34345596 None:intergenic
CATTTAAAGACATGATTGAA+GGG 0.534248 3_4:-34346625 Msa0498320:CDS
TTCACCAAACGGGCTTATGT+AGG 0.535111 3_4:-34345835 Msa0498320:CDS
AGAGAGAAGAAAAGCCATAT+GGG 0.536115 3_4:-34347679 Msa0498320:CDS
TACAAGATCCTCAGAGGAGA+GGG 0.538242 3_4:-34348711 Msa0498320:CDS
ACCAAAGGCTTTGGACAGAT+GGG 0.545382 3_4:-34347493 Msa0498320:CDS
GAGCATCTACAATGCTGCAT+TGG 0.547623 3_4:-34346465 Msa0498320:CDS
AAATGGCGCAATTTCATGAA+AGG 0.563781 3_4:-34346003 Msa0498320:CDS
TAGTTTCCTAGAAATCAGAA+TGG 0.573289 3_4:-34345671 Msa0498320:three_prime_UTR
GTGCCAATTCATCTTGCGGA+AGG 0.588837 3_4:+34346073 None:intergenic
TCCAACGTCTCTAAGTATGT+TGG 0.590935 3_4:+34346418 None:intergenic
AGAACTCAAAAGTTCCCCAT+TGG 0.594991 3_4:+34348583 None:intergenic
GCTTGTGCCAATTCATCTTG+CGG 0.595244 3_4:+34346069 None:intergenic
TTAGGGGACAGAAAGTGTTG+GGG 0.602126 3_4:-34345521 Msa0498320:three_prime_UTR
AAGGTCAAATAAAGAGAGCA+AGG 0.603555 3_4:-34345984 Msa0498320:CDS
ACCAACATACTTAGAGACGT+TGG 0.613097 3_4:-34346419 Msa0498320:CDS
AGAACAGATGAGTTAGTGGA+TGG 0.619649 3_4:-34347537 Msa0498320:CDS
AGAGGAGAGGGTGTATGAAG+TGG 0.622701 3_4:-34348699 Msa0498320:CDS
GAAAAGATGTAAGAACTCAA+AGG 0.626190 3_4:-34348793 Msa0498320:CDS
TTATGAGTGTTCCTGTAATG+GGG 0.627271 3_4:-34346517 Msa0498320:CDS
TGCTTCACACATCACACCAA+AGG 0.631660 3_4:-34347508 Msa0498320:CDS
AGTTCTGCTTATGATAGATG+TGG 0.632966 3_4:-34348566 Msa0498320:CDS
GAAGCAAGCAGCCCTAGTGA+AGG 0.638244 3_4:-34348672 Msa0498320:CDS
CTACAAGATCCTCAGAGGAG+AGG 0.648794 3_4:-34348712 Msa0498320:CDS
TCGTCTTATAGTGCTAGAAG+AGG 0.652452 3_4:-34346105 Msa0498320:intron
TTCATACACCCTCTCCTCTG+AGG 0.670132 3_4:+34348703 None:intergenic
AAGATGTAAGAACTCAAAGG+AGG 0.687423 3_4:-34348790 Msa0498320:CDS
TGAAGGTGATTTCACCAATG+GGG 0.696835 3_4:-34348597 Msa0498320:CDS
AACCTACCTGTATATCAACA+GGG 0.701397 3_4:+34347391 None:intergenic
TGAACCTACAAGATCCTCAG+AGG 0.724557 3_4:-34348717 Msa0498320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAACCATATTTATTA+TGG - chr3_4:34348376-34348395 Msa0498320:intron 10.0%
!! GAAATATTATTCTAAATTTG+AGG + chr3_4:34345571-34345590 None:intergenic 15.0%
!!! TTGATAACATGAATATTTTT+TGG - chr3_4:34346127-34346146 Msa0498320:intron 15.0%
!!! TTATAATTTTGTCAAAATCA+CGG + chr3_4:34346586-34346605 None:intergenic 15.0%
!!! AAATTTCACATTTCAATTTT+GGG + chr3_4:34347228-34347247 None:intergenic 15.0%
!!! TAAATTTCACATTTCAATTT+TGG + chr3_4:34347229-34347248 None:intergenic 15.0%
!!! ATAATTTTATTCCTATTTGA+AGG + chr3_4:34347263-34347282 None:intergenic 15.0%
!!! TCACATATAAAAACTTTTTT+AGG + chr3_4:34347784-34347803 None:intergenic 15.0%
!!! AGATCAGTTTTTTTTTTTTT+TGG + chr3_4:34347907-34347926 None:intergenic 15.0%
!! TAGAGAAAAATATGAATGAA+AGG + chr3_4:34345543-34345562 None:intergenic 20.0%
!! AGAAAAGATATTAAAAAGAG+AGG - chr3_4:34345938-34345957 Msa0498320:CDS 20.0%
!!! TATGCAAAGACATTTTATTT+AGG - chr3_4:34346055-34346074 Msa0498320:CDS 20.0%
!! AATTTAGACGATATATCATA+GGG - chr3_4:34346288-34346307 Msa0498320:intron 20.0%
!!! TTTGAAGTTTTGATCAATAA+AGG + chr3_4:34346858-34346877 None:intergenic 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - chr3_4:34348344-34348363 Msa0498320:intron 20.0%
!!! TGTAAAAGTACATCATTTTG+AGG + chr3_4:34345516-34345535 None:intergenic 25.0%
!!! TTTTTTGTGAGGCAATTAAA+TGG + chr3_4:34345599-34345618 None:intergenic 25.0%
!!! AAAAACTGTACTTTTTTGTG+AGG + chr3_4:34345610-34345629 None:intergenic 25.0%
! TAAAAAGAGAGGTTTGAATT+TGG - chr3_4:34345949-34345968 Msa0498320:CDS 25.0%
!! GCGAAAAATCTAAAACAAAA+GGG + chr3_4:34346093-34346112 None:intergenic 25.0%
!! TGCGAAAAATCTAAAACAAA+AGG + chr3_4:34346094-34346113 None:intergenic 25.0%
! GAATTTAGACGATATATCAT+AGG - chr3_4:34346287-34346306 Msa0498320:intron 25.0%
! ATGCTAATTAATAGTTCAGT+CGG + chr3_4:34346406-34346425 None:intergenic 25.0%
!! AAGACATCGTAAACTATTTT+TGG + chr3_4:34346460-34346479 None:intergenic 25.0%
! TTTGCGAATATGTTACATAA+CGG - chr3_4:34346640-34346659 Msa0498320:intron 25.0%
!!! ATATGTTACATAACGGATTT+AGG - chr3_4:34346647-34346666 Msa0498320:intron 25.0%
!!! TATGTTACATAACGGATTTA+GGG - chr3_4:34346648-34346667 Msa0498320:intron 25.0%
! ATATTGTAAGTTTGAATTGG+CGG + chr3_4:34346773-34346792 None:intergenic 25.0%
! CTTCAAAATTTCTGTTACAA+AGG - chr3_4:34346952-34346971 Msa0498320:intron 25.0%
!!! AGATTAACTGATGTTTTTGA+AGG - chr3_4:34347117-34347136 Msa0498320:intron 25.0%
! GAGTATGTTTGCTTAAAATT+AGG - chr3_4:34347334-34347353 Msa0498320:intron 25.0%
!! AAATTGATTTCATCTCTCTA+AGG - chr3_4:34347359-34347378 Msa0498320:intron 25.0%
! TCATCTTAAAAATTTGCATC+TGG + chr3_4:34347652-34347671 None:intergenic 25.0%
! CATTTAAAGACATGATTGAA+GGG - chr3_4:34347957-34347976 Msa0498320:intron 25.0%
!! TATTGTATCTTGATTTTCTC+AGG + chr3_4:34347994-34348013 None:intergenic 25.0%
! CATTAATTAGAAATCGAACT+CGG - chr3_4:34348243-34348262 Msa0498320:intron 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG - chr3_4:34348343-34348362 Msa0498320:intron 25.0%
! ACCATATTTATTATGGATGA+TGG - chr3_4:34348383-34348402 Msa0498320:intron 25.0%
!!! CTAATTTTTTCTTGTTTCCA+TGG - chr3_4:34348454-34348473 Msa0498320:intron 25.0%
! ACTATAATAACTTCACCAAA+CGG - chr3_4:34348736-34348755 Msa0498320:CDS 25.0%
!!! TTCAAAAGCATTGAATAGTT+TGG - chr3_4:34348872-34348891 Msa0498320:exon 25.0%
!! TTTTTACCATTCTGATTTCT+AGG + chr3_4:34348920-34348939 None:intergenic 25.0%
GAAAAGATGTAAGAACTCAA+AGG - chr3_4:34345789-34345808 Msa0498320:CDS 30.0%
! TTTTCTTTGTTCCTTCACTA+GGG + chr3_4:34345924-34345943 None:intergenic 30.0%
! ATGTAAAGAAGCTTTAGTCA+TGG - chr3_4:34346182-34346201 Msa0498320:intron 30.0%
ATGAAATTTGAACCGATATG+TGG + chr3_4:34346228-34346247 None:intergenic 30.0%
! CATACTTTTATCTTGCCTTT+TGG - chr3_4:34346245-34346264 Msa0498320:intron 30.0%
! ATTTGAGTTCAAATCCTAAC+AGG - chr3_4:34346350-34346369 Msa0498320:intron 30.0%
TAATTAATAGTTCAGTCGGA+AGG + chr3_4:34346402-34346421 None:intergenic 30.0%
GACTGAACTATTAATTAGCA+TGG - chr3_4:34346405-34346424 Msa0498320:intron 30.0%
TCTCTATCGAACTACTTATA+TGG + chr3_4:34346549-34346568 None:intergenic 30.0%
! TTTAGAGCTTCAACAAAACA+CGG + chr3_4:34346699-34346718 None:intergenic 30.0%
GTAAGCTATTGTCAAAAACA+CGG - chr3_4:34346721-34346740 Msa0498320:intron 30.0%
GCCAATTCAAACTTACAATA+TGG - chr3_4:34346772-34346791 Msa0498320:intron 30.0%
GCCATATTGTAAGTTTGAAT+TGG + chr3_4:34346776-34346795 None:intergenic 30.0%
GATCAATAAAGGACGAATAA+AGG + chr3_4:34346847-34346866 None:intergenic 30.0%
TGATCAAAACTTCAAATCTC+AGG - chr3_4:34346862-34346881 Msa0498320:intron 30.0%
CTAATTAGACATACCGTAAA+TGG + chr3_4:34346929-34346948 None:intergenic 30.0%
CACTGTAATAATACATAGAG+TGG + chr3_4:34347016-34347035 None:intergenic 30.0%
CTCTATGTATTATTACAGTG+TGG - chr3_4:34347016-34347035 Msa0498320:intron 30.0%
ACCTTTCTATACCTTCAAAT+AGG - chr3_4:34347249-34347268 Msa0498320:intron 30.0%
! TCCTATTTGAAGGTATAGAA+AGG + chr3_4:34347253-34347272 None:intergenic 30.0%
CTTGTATGACACACATATAA+GGG - chr3_4:34347386-34347405 Msa0498320:intron 30.0%
! TGAGTCCATCTAAAATTTGA+TGG - chr3_4:34347669-34347688 Msa0498320:intron 30.0%
! GAGTCCATCTAAAATTTGAT+GGG - chr3_4:34347670-34347689 Msa0498320:CDS 30.0%
! AGTCCATCTAAAATTTGATG+GGG - chr3_4:34347671-34347690 Msa0498320:CDS 30.0%
! ACATTTCAGATTTCAAGTGT+TGG - chr3_4:34347716-34347735 Msa0498320:intron 30.0%
! TTTGCCATTTAAGCAAATAG+AGG - chr3_4:34347865-34347884 Msa0498320:intron 30.0%
! TTGCCATTTAAGCAAATAGA+GGG - chr3_4:34347866-34347885 Msa0498320:intron 30.0%
CCTTCAATCATGTCTTTAAA+TGG + chr3_4:34347959-34347978 None:intergenic 30.0%
CCATTTAAAGACATGATTGA+AGG - chr3_4:34347956-34347975 Msa0498320:intron 30.0%
TATATTGCTACTATGTTGCT+GGG - chr3_4:34348032-34348051 Msa0498320:intron 30.0%
GCCATCATCCATAATAAATA+TGG + chr3_4:34348387-34348406 None:intergenic 30.0%
!!! GTGAGTTTTGAAGAAAACAT+GGG + chr3_4:34348411-34348430 None:intergenic 30.0%
!!! TGTGAGTTTTGAAGAAAACA+TGG + chr3_4:34348412-34348431 None:intergenic 30.0%
GAAAAATGTCATCATCTGAT+AGG + chr3_4:34348542-34348561 None:intergenic 30.0%
CTATAATAACTTCACCAAAC+GGG - chr3_4:34348737-34348756 Msa0498320:CDS 30.0%
!!! TCATTTTGGTTAACTTCTGT+GGG + chr3_4:34348827-34348846 None:intergenic 30.0%
! TGTTCATCTTGTAGTCATTT+TGG + chr3_4:34348841-34348860 None:intergenic 30.0%
TAGTTTCCTAGAAATCAGAA+TGG - chr3_4:34348911-34348930 Msa0498320:five_prime_UTR 30.0%
CTTCAACATTACTAAACTTG+AGG + chr3_4:34348989-34349008 None:intergenic 30.0%
TATTGTTTGTTTCCGAGATA+CGG - chr3_4:34349027-34349046 Msa0498320:five_prime_UTR 30.0%
!! ATACGGAAAGTGTGTTTTTA+GGG - chr3_4:34349044-34349063 Msa0498320:five_prime_UTR 30.0%
GTGAGGCAATTAAATGGTTT+AGG + chr3_4:34345593-34345612 None:intergenic 35.0%
TGTTCTATTCCTAAGATGTC+TGG - chr3_4:34345704-34345723 Msa0498320:three_prime_UTR 35.0%
! AGAGAATGCCATTTCCTTAA+TGG - chr3_4:34345757-34345776 Msa0498320:CDS 35.0%
! GAGAATGCCATTTCCTTAAT+GGG - chr3_4:34345758-34345777 Msa0498320:CDS 35.0%
AAGATGTAAGAACTCAAAGG+AGG - chr3_4:34345792-34345811 Msa0498320:CDS 35.0%
! CTTTTCTTTGTTCCTTCACT+AGG + chr3_4:34345925-34345944 None:intergenic 35.0%
TTGGATGATAAGCCTATTGA+AGG - chr3_4:34345968-34345987 Msa0498320:CDS 35.0%
TTGGTGAAATCACCTTCAAT+AGG + chr3_4:34345983-34346002 None:intergenic 35.0%
ATTGAAGGTGATTTCACCAA+TGG - chr3_4:34345983-34346002 Msa0498320:CDS 35.0%
TTGAAGGTGATTTCACCAAT+GGG - chr3_4:34345984-34346003 Msa0498320:CDS 35.0%
AGTTCTGCTTATGATAGATG+TGG - chr3_4:34346016-34346035 Msa0498320:CDS 35.0%
! CTCTAGAAGTAACCACATAT+CGG - chr3_4:34346213-34346232 Msa0498320:intron 35.0%
TTCCACTAGAATCAACCAAA+AGG + chr3_4:34346263-34346282 None:intergenic 35.0%
TAAAACGATTGACGAGCAAA+AGG + chr3_4:34346327-34346346 None:intergenic 35.0%
ATCCTAACAGGAACAATCAT+CGG - chr3_4:34346362-34346381 Msa0498320:intron 35.0%
TTCATCTCTTCTACGAATGA+AGG - chr3_4:34346428-34346447 Msa0498320:CDS 35.0%
CTTAACTTTGTACCGAAATG+TGG - chr3_4:34346477-34346496 Msa0498320:CDS 35.0%
! GTGTCACTAGGATATTCTTT+CGG + chr3_4:34346517-34346536 None:intergenic 35.0%
AAGAGAGAAGAAAAGCCATA+TGG - chr3_4:34346902-34346921 Msa0498320:intron 35.0%
AGAGAGAAGAAAAGCCATAT+GGG - chr3_4:34346903-34346922 Msa0498320:intron 35.0%
TTACAAAGGCTTCTCTAATG+TGG - chr3_4:34346966-34346985 Msa0498320:intron 35.0%
GCAGCATCATACATATCATA+AGG + chr3_4:34347147-34347166 None:intergenic 35.0%
! AAAGTACCCTGTTGATATAC+AGG - chr3_4:34347185-34347204 Msa0498320:intron 35.0%
AACCTACCTGTATATCAACA+GGG + chr3_4:34347194-34347213 None:intergenic 35.0%
TAACCTACCTGTATATCAAC+AGG + chr3_4:34347195-34347214 None:intergenic 35.0%
! ACATTTCAATTTTGGGCATG+TGG + chr3_4:34347221-34347240 None:intergenic 35.0%
GCTTGTATGACACACATATA+AGG - chr3_4:34347385-34347404 Msa0498320:intron 35.0%
CTAAATTAGCCCACTCAAAT+TGG + chr3_4:34347570-34347589 None:intergenic 35.0%
!! GAAACTGGCTTGTAAGTTTA+TGG + chr3_4:34347614-34347633 None:intergenic 35.0%
AACTTACAAGCCAGTTTCTT+TGG - chr3_4:34347616-34347635 Msa0498320:intron 35.0%
! GTCCATCTAAAATTTGATGG+GGG - chr3_4:34347672-34347691 Msa0498320:CDS 35.0%
! TCCATCTAAAATTTGATGGG+GGG - chr3_4:34347673-34347692 Msa0498320:CDS 35.0%
GTACCCTCTATTTGCTTAAA+TGG + chr3_4:34347872-34347891 None:intergenic 35.0%
CAGCAACATAGTAGCAATAT+AGG + chr3_4:34348033-34348052 None:intergenic 35.0%
CTATATTGCTACTATGTTGC+TGG - chr3_4:34348031-34348050 Msa0498320:intron 35.0%
CTTATGAGTGTTCCTGTAAT+GGG - chr3_4:34348064-34348083 Msa0498320:intron 35.0%
TTATGAGTGTTCCTGTAATG+GGG - chr3_4:34348065-34348084 Msa0498320:intron 35.0%
AGACATGTGGTTACAATTAG+AGG - chr3_4:34348312-34348331 Msa0498320:intron 35.0%
GACATGTGGTTACAATTAGA+GGG - chr3_4:34348313-34348332 Msa0498320:intron 35.0%
! TCAGATGATGACATTTTTCG+AGG - chr3_4:34348543-34348562 Msa0498320:CDS 35.0%
AAATGGCGCAATTTCATGAA+AGG - chr3_4:34348579-34348598 Msa0498320:CDS 35.0%
AAGGTCAAATAAAGAGAGCA+AGG - chr3_4:34348598-34348617 Msa0498320:CDS 35.0%
!!! AGCAAGGATGTTTTTTGATG+AGG - chr3_4:34348614-34348633 Msa0498320:CDS 35.0%
!!! TTTTTTGATGAGGCAGAGAA+GGG - chr3_4:34348624-34348643 Msa0498320:CDS 35.0%
!!! GTCATTTTGGTTAACTTCTG+TGG + chr3_4:34348828-34348847 None:intergenic 35.0%
AAAACACACTTTCCGTATCT+CGG + chr3_4:34349042-34349061 None:intergenic 35.0%
!! GATACGGAAAGTGTGTTTTT+AGG - chr3_4:34349043-34349062 Msa0498320:five_prime_UTR 35.0%
!!! TACGGAAAGTGTGTTTTTAG+GGG - chr3_4:34349045-34349064 Msa0498320:five_prime_UTR 35.0%
AGAAGAACACCAGACATCTT+AGG + chr3_4:34345716-34345735 None:intergenic 40.0%
AGATGTCTGGTGTTCTTCTT+TGG - chr3_4:34345717-34345736 Msa0498320:three_prime_UTR 40.0%
GATGTCTGGTGTTCTTCTTT+GGG - chr3_4:34345718-34345737 Msa0498320:three_prime_UTR 40.0%
GTTCTTCTTTGGGTGAATTG+TGG - chr3_4:34345728-34345747 Msa0498320:exon 40.0%
TCCAAGACCCATTAAGGAAA+TGG + chr3_4:34345768-34345787 None:intergenic 40.0%
! ATTTCCTTAATGGGTCTTGG+AGG - chr3_4:34345767-34345786 Msa0498320:CDS 40.0%
! TTTTCCTCCAAGACCCATTA+AGG + chr3_4:34345774-34345793 None:intergenic 40.0%
AGGAGGTTTAGACATTGTTC+TGG - chr3_4:34345809-34345828 Msa0498320:CDS 40.0%
TGAAGGTGATTTCACCAATG+GGG - chr3_4:34345985-34346004 Msa0498320:CDS 40.0%
AGAACTCAAAAGTTCCCCAT+TGG + chr3_4:34346002-34346021 None:intergenic 40.0%
!! TGCCTTTTGGTTGATTCTAG+TGG - chr3_4:34346258-34346277 Msa0498320:intron 40.0%
GGAAACTTGAGACCACATTT+CGG + chr3_4:34346492-34346511 None:intergenic 40.0%
CACTAGGATATTCTTTCGGT+AGG + chr3_4:34346513-34346532 None:intergenic 40.0%
! TGGATGATTGTAGTGTCACT+AGG + chr3_4:34346529-34346548 None:intergenic 40.0%
CACGCGTGATTATGTTAAAC+TGG - chr3_4:34346747-34346766 Msa0498320:intron 40.0%
AAAGCCATATGGGCCATTTA+CGG - chr3_4:34346913-34346932 Msa0498320:intron 40.0%
CAGAAGAACAGATGAGTTAG+TGG - chr3_4:34347041-34347060 Msa0498320:intron 40.0%
AGAACAGATGAGTTAGTGGA+TGG - chr3_4:34347045-34347064 Msa0498320:intron 40.0%
TACCCTGTTGATATACAGGT+AGG - chr3_4:34347189-34347208 Msa0498320:intron 40.0%
AGAACTCAAACTTGTCACTG+AGG - chr3_4:34347312-34347331 Msa0498320:intron 40.0%
GTATGACACACATATAAGGG+TGG - chr3_4:34347389-34347408 Msa0498320:intron 40.0%
TCTCTGATGCCAATTTGAGT+GGG - chr3_4:34347558-34347577 Msa0498320:intron 40.0%
CTGAAATGTAACCTGCTTGT+GGG + chr3_4:34347705-34347724 None:intergenic 40.0%
! TCTGAAATGTAACCTGCTTG+TGG + chr3_4:34347706-34347725 None:intergenic 40.0%
AAGACATGATTGAAGGGATG+AGG - chr3_4:34347963-34347982 Msa0498320:intron 40.0%
CCATTACAGGAACACTCATA+AGG + chr3_4:34348066-34348085 None:intergenic 40.0%
CCTTATGAGTGTTCCTGTAA+TGG - chr3_4:34348063-34348082 Msa0498320:intron 40.0%
!! TCTGTTGAAGCTTTGGATTG+TGG + chr3_4:34348097-34348116 None:intergenic 40.0%
ACCAACATACTTAGAGACGT+TGG - chr3_4:34348163-34348182 Msa0498320:intron 40.0%
TCCAACGTCTCTAAGTATGT+TGG + chr3_4:34348167-34348186 None:intergenic 40.0%
GAGGGACTAAAACGAAAAGT+TGG - chr3_4:34348331-34348350 Msa0498320:intron 40.0%
TCGTCTTATAGTGCTAGAAG+AGG - chr3_4:34348477-34348496 Msa0498320:intron 40.0%
CATGAAATTGCGCCATTTGT+CGG + chr3_4:34348577-34348596 None:intergenic 40.0%
!!! GTTTTTTGATGAGGCAGAGA+AGG - chr3_4:34348623-34348642 Msa0498320:CDS 40.0%
! TTTTCCTACATAAGCCCGTT+TGG + chr3_4:34348754-34348773 None:intergenic 40.0%
TTATCACTTCCTGTTGCTCT+TGG - chr3_4:34348786-34348805 Msa0498320:CDS 40.0%
!! TTTTAGGGGACAGAAAGTGT+TGG - chr3_4:34349059-34349078 Msa0498320:five_prime_UTR 40.0%
!! TTTAGGGGACAGAAAGTGTT+GGG - chr3_4:34349060-34349079 Msa0498320:five_prime_UTR 40.0%
! GCCATTTCCTTAATGGGTCT+TGG - chr3_4:34345764-34345783 Msa0498320:CDS 45.0%
TGAACCTACAAGATCCTCAG+AGG - chr3_4:34345865-34345884 Msa0498320:CDS 45.0%
TACAAGATCCTCAGAGGAGA+GGG - chr3_4:34345871-34345890 Msa0498320:CDS 45.0%
GACCGATGATTGTTCCTGTT+AGG + chr3_4:34346367-34346386 None:intergenic 45.0%
CATACCGTAAATGGCCCATA+TGG + chr3_4:34346920-34346939 None:intergenic 45.0%
! GGCTTCTCTAATGTGGATTG+TGG - chr3_4:34346973-34346992 Msa0498320:intron 45.0%
AGAGTGGTCAGTTTCTACTG+AGG + chr3_4:34347000-34347019 None:intergenic 45.0%
! GGTGTGATGTGTGAAGCATT+AGG + chr3_4:34347072-34347091 None:intergenic 45.0%
TGCTTCACACATCACACCAA+AGG - chr3_4:34347074-34347093 Msa0498320:intron 45.0%
ACACATCACACCAAAGGCTT+TGG - chr3_4:34347080-34347099 Msa0498320:intron 45.0%
!! ACCAAAGGCTTTGGACAGAT+GGG - chr3_4:34347089-34347108 Msa0498320:intron 45.0%
TACGTCTTTAGTCACCCACT+TGG - chr3_4:34347469-34347488 Msa0498320:CDS 45.0%
ACGTCTTTAGTCACCCACTT+GGG - chr3_4:34347470-34347489 Msa0498320:CDS 45.0%
! GTGGTAGTGACTTGAGATCT+GGG - chr3_4:34347501-34347520 Msa0498320:CDS 45.0%
! GAATCGAATCTGAGACCTTG+AGG + chr3_4:34347538-34347557 None:intergenic 45.0%
CTCTCTGATGCCAATTTGAG+TGG - chr3_4:34347557-34347576 Msa0498320:intron 45.0%
CCTAACTCAGCCAAAGAAAC+TGG + chr3_4:34347629-34347648 None:intergenic 45.0%
CCAGTTTCTTTGGCTGAGTT+AGG - chr3_4:34347626-34347645 Msa0498320:intron 45.0%
! GCCCCCCATCAAATTTTAGA+TGG + chr3_4:34347677-34347696 None:intergenic 45.0%
GTTGGATGTGATCGAGTGTA+AGG - chr3_4:34347734-34347753 Msa0498320:intron 45.0%
TACTATGTTGCTGGGACTGT+GGG - chr3_4:34348040-34348059 Msa0498320:intron 45.0%
! TGTGGTTCTATCCCCATTAC+AGG + chr3_4:34348079-34348098 None:intergenic 45.0%
GATGCTCTCTGTTGAAGCTT+TGG + chr3_4:34348104-34348123 None:intergenic 45.0%
GAGCATCTACAATGCTGCAT+TGG - chr3_4:34348117-34348136 Msa0498320:intron 45.0%
! TACAATGCTGCATTGGCACT+TGG - chr3_4:34348124-34348143 Msa0498320:intron 45.0%
AGTGCTTGGTATGGAAAGTG+TGG + chr3_4:34348286-34348305 None:intergenic 45.0%
TCTAGCACAAGTGCTTGGTA+TGG + chr3_4:34348295-34348314 None:intergenic 45.0%
ACATGTCTAGCACAAGTGCT+TGG + chr3_4:34348300-34348319 None:intergenic 45.0%
AAGCACTTGTGCTAGACATG+TGG - chr3_4:34348299-34348318 Msa0498320:intron 45.0%
CTAGCACTATAAGACGACCA+TGG + chr3_4:34348474-34348493 None:intergenic 45.0%
GTACCTTCCGCAAGATGAAT+TGG - chr3_4:34348506-34348525 Msa0498320:intron 45.0%
GCTTGTGCCAATTCATCTTG+CGG + chr3_4:34348516-34348535 None:intergenic 45.0%
CAAGATGAATTGGCACAAGC+TGG - chr3_4:34348516-34348535 Msa0498320:intron 45.0%
AGCTCAGTTCAGCAAGTAGA+TGG - chr3_4:34348655-34348674 Msa0498320:CDS 45.0%
AGCAAGTAGATGGCCTGTTT+GGG - chr3_4:34348665-34348684 Msa0498320:CDS 45.0%
AACAGCAAAGATGCCCAAAC+AGG + chr3_4:34348681-34348700 None:intergenic 45.0%
!! GGGCATCTTTGCTGTTGTAT+AGG - chr3_4:34348685-34348704 Msa0498320:CDS 45.0%
! TTCACCAAACGGGCTTATGT+AGG - chr3_4:34348747-34348766 Msa0498320:CDS 45.0%
! GTTGCTATTCCAAGAGCAAC+AGG + chr3_4:34348798-34348817 None:intergenic 45.0%
GCTCTTGGAATAGCAACGTT+TGG - chr3_4:34348801-34348820 Msa0498320:CDS 45.0%
!! TTAGGGGACAGAAAGTGTTG+GGG - chr3_4:34349061-34349080 Msa0498320:five_prime_UTR 45.0%
! CTCTCCTCTGAGGATCTTGT+AGG + chr3_4:34345872-34345891 None:intergenic 50.0%
CTACAAGATCCTCAGAGGAG+AGG - chr3_4:34345870-34345889 Msa0498320:CDS 50.0%
TTCATACACCCTCTCCTCTG+AGG + chr3_4:34345882-34345901 None:intergenic 50.0%
! AGAGGAGAGGGTGTATGAAG+TGG - chr3_4:34345883-34345902 Msa0498320:CDS 50.0%
!! CACCAAAGGCTTTGGACAGA+TGG - chr3_4:34347088-34347107 Msa0498320:intron 50.0%
TCCCATCTGTCCAAAGCCTT+TGG + chr3_4:34347093-34347112 None:intergenic 50.0%
CTTTAGTCACCCACTTGGGT+TGG - chr3_4:34347474-34347493 Msa0498320:CDS 50.0%
GATCTCAAGTCACTACCACC+AGG + chr3_4:34347500-34347519 None:intergenic 50.0%
! GGTGGTAGTGACTTGAGATC+TGG - chr3_4:34347500-34347519 Msa0498320:CDS 50.0%
CATGATTGAAGGGATGAGGC+TGG - chr3_4:34347967-34347986 Msa0498320:intron 50.0%
CTACTATGTTGCTGGGACTG+TGG - chr3_4:34348039-34348058 Msa0498320:intron 50.0%
GTGCCAATTCATCTTGCGGA+AGG + chr3_4:34348512-34348531 None:intergenic 50.0%
GAGGCAGAGTAACCGACAAA+TGG - chr3_4:34348562-34348581 Msa0498320:CDS 50.0%
CAGCAAGTAGATGGCCTGTT+TGG - chr3_4:34348664-34348683 Msa0498320:CDS 50.0%
GAAGCAAGCAGCCCTAGTGA+AGG - chr3_4:34345910-34345929 Msa0498320:CDS 55.0%
! TGGGAGTGTGCTTCTCCTCA+AGG - chr3_4:34347520-34347539 Msa0498320:CDS 55.0%
ACCACCAGGCCAACCCAAGT+GGG + chr3_4:34347486-34347505 None:intergenic 60.0%
TACCACCAGGCCAACCCAAG+TGG + chr3_4:34347487-34347506 None:intergenic 60.0%
!! GTCACCCACTTGGGTTGGCC+TGG - chr3_4:34347479-34347498 Msa0498320:CDS 65.0%
!! ACCCACTTGGGTTGGCCTGG+TGG - chr3_4:34347482-34347501 Msa0498320:CDS 65.0%
GGGGGCTCTCACCCACAAGC+AGG - chr3_4:34347691-34347710 Msa0498320:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 34345504 34349100 34345504 ID=Msa0498320;Name=Msa0498320
chr3_4 mRNA 34345504 34349100 34345504 ID=Msa0498320-mRNA-1;Parent=Msa0498320;Name=Msa0498320-mRNA-1;_AED=0.03;_eAED=0.03;_QI=215|1|1|1|1|1|5|243|395
chr3_4 exon 34345504 34346116 34345504 ID=Msa0498320-mRNA-1:exon:7302;Parent=Msa0498320-mRNA-1
chr3_4 exon 34346413 34346648 34346413 ID=Msa0498320-mRNA-1:exon:7301;Parent=Msa0498320-mRNA-1
chr3_4 exon 34347398 34347570 34347398 ID=Msa0498320-mRNA-1:exon:7300;Parent=Msa0498320-mRNA-1
chr3_4 exon 34347670 34347720 34347670 ID=Msa0498320-mRNA-1:exon:7299;Parent=Msa0498320-mRNA-1
chr3_4 exon 34348528 34349100 34348528 ID=Msa0498320-mRNA-1:exon:7298;Parent=Msa0498320-mRNA-1
chr3_4 five_prime_UTR 34348886 34349100 34348886 ID=Msa0498320-mRNA-1:five_prime_utr;Parent=Msa0498320-mRNA-1
chr3_4 CDS 34348528 34348885 34348528 ID=Msa0498320-mRNA-1:cds;Parent=Msa0498320-mRNA-1
chr3_4 CDS 34347670 34347720 34347670 ID=Msa0498320-mRNA-1:cds;Parent=Msa0498320-mRNA-1
chr3_4 CDS 34347398 34347570 34347398 ID=Msa0498320-mRNA-1:cds;Parent=Msa0498320-mRNA-1
chr3_4 CDS 34346413 34346648 34346413 ID=Msa0498320-mRNA-1:cds;Parent=Msa0498320-mRNA-1
chr3_4 CDS 34345747 34346116 34345747 ID=Msa0498320-mRNA-1:cds;Parent=Msa0498320-mRNA-1
chr3_4 three_prime_UTR 34345504 34345746 34345504 ID=Msa0498320-mRNA-1:three_prime_utr;Parent=Msa0498320-mRNA-1
Gene Sequence

>Msa0498320

ATGTCTGGTGTTCTTCTTTGGGTGAATTGTGGACTCAAAGAGAATGCCATTTCCTTAATGGGTCTTGGAGGAAAAGATGTAAGAACTCAAAGGAGGTTTAGACATTGTTCTGGAATTAGCTTTGCTAGCTTTTCAAGTGCAATTGTTGAACCTACAAGATCCTCAGAGGAGAGGGTGTATGAAGTGGTGTTGAAGCAAGCAGCCCTAGTGAAGGAACAAAGAAAAGATATTAAAAAGAGAGGTTTGAATTTGGATGATAAGCCTATTGAAGGTGATTTCACCAATGGGGAACTTTTGAGTTCTGCTTATGATAGATGTGGTGATGTATGTGCTGAGTATGCAAAGACATTTTATTTAGGCACACAATTGATGACTCAAGAGAGAAGAAAAGCCATATGGGCCATTTACGTGTGGTGCAGAAGAACAGATGAGTTAGTGGATGGTCCTAATGCTTCACACATCACACCAAAGGCTTTGGACAGATGGGAACAAAGATTAACTGATGTTTTTGAAGGACGTCCTTATGATATGTATGATGCTGCACTTTCAGACACAGTCACAAAGTACCCTGTTGATATACAGCCATTTAAAGACATGATTGAAGGGATGAGGCTGGACCTGAGAAAATCAAGATACAATAACTTTGATGAACTATACCTATATTGCTACTATGTTGCTGGGACTGTGGGCCTTATGAGTGTTCCTGTAATGGGGATAGAACCACAATCCAAAGCTTCAACAGAGAGCATCTACAATGCTGCATTGGCACTTGGCATTGCTAATCAACTTACCAACATACTTAGAGACGTTGGAGAAGATGCTAGAAGAGGAAGAGTGTACCTTCCGCAAGATGAATTGGCACAAGCTGGCCTATCAGATGATGACATTTTTCGAGGCAGAGTAACCGACAAATGGCGCAATTTCATGAAAGGTCAAATAAAGAGAGCAAGGATGTTTTTTGATGAGGCAGAGAAGGGAGTTTCAGAGCTCAGTTCAGCAAGTAGATGGCCTGTTTGGGCATCTTTGCTGTTGTATAGGCAGATATTAGATTCTATTGAAGCTAATGACTATAATAACTTCACCAAACGGGCTTATGTAGGAAAAGCTAAAAAGCTCTTATCACTTCCTGTTGCTCTTGGAATAGCAACGTTTGGCCCACAGAAGTTAACCAAAATGACTACAAGATGA

Protein sequence

>Msa0498320

MSGVLLWVNCGLKENAISLMGLGGKDVRTQRRFRHCSGISFASFSSAIVEPTRSSEERVYEVVLKQAALVKEQRKDIKKRGLNLDDKPIEGDFTNGELLSSAYDRCGDVCAEYAKTFYLGTQLMTQERRKAIWAIYVWCRRTDELVDGPNASHITPKALDRWEQRLTDVFEGRPYDMYDAALSDTVTKYPVDIQPFKDMIEGMRLDLRKSRYNNFDELYLYCYYVAGTVGLMSVPVMGIEPQSKASTESIYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFRGRVTDKWRNFMKGQIKRARMFFDEAEKGVSELSSASRWPVWASLLLYRQILDSIEANDYNNFTKRAYVGKAKKLLSLPVALGIATFGPQKLTKMTTR*