Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025510 | XP_013468111.1 | 96.867 | 383 | 11 | 1 | 1 | 383 | 42 | 423 | 0.0 | 761 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025510 | sp|P38094|FLUG_EMENI | 30.435 | 414 | 245 | 14 | 3 | 381 | 4 | 409 | 6.32e-47 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025510 | Msa0095940 | 0.806889 | 6.605649e-50 | -8.615850e-47 |
| Msa0025510 | Msa0166260 | 0.930756 | 1.029093e-93 | -8.615850e-47 |
| Msa0025510 | Msa0490320 | 0.817177 | 3.774196e-52 | -8.615850e-47 |
| Msa0025510 | Msa0619310 | 0.809063 | 2.276462e-50 | -8.615850e-47 |
| Msa0025510 | Msa0833270 | 0.804895 | 1.733992e-49 | -8.615850e-47 |
| Msa0025510 | Msa0901270 | 0.805081 | 1.585928e-49 | -8.615850e-47 |
| Msa0025510 | Msa0966580 | 0.817380 | 3.398709e-52 | -8.615850e-47 |
| Msa0025510 | Msa1027340 | 0.825151 | 5.480319e-54 | -8.615850e-47 |
| Msa0025510 | Msa1027400 | 0.827729 | 1.332176e-54 | -8.615850e-47 |
| Msa0025510 | Msa1154570 | 0.822535 | 2.249440e-53 | -8.615850e-47 |
| Msa0025510 | Msa1404050 | 0.817848 | 2.665591e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025510 | MtrunA17_Chr1g0180191 | 69.351 | 385 | 115 | 1 | 1 | 382 | 1 | 385 | 0.0 | 567 |
| Msa0025510 | MtrunA17_Chr1g0180251 | 99.111 | 225 | 2 | 0 | 159 | 383 | 1 | 225 | 2.21e-164 | 459 |
| Msa0025510 | MtrunA17_Chr1g0180241 | 94.969 | 159 | 8 | 0 | 1 | 159 | 42 | 200 | 7.18e-108 | 315 |
| Msa0025510 | MtrunA17_Chr1g0180151 | 69.697 | 198 | 57 | 1 | 184 | 381 | 4 | 198 | 3.64e-93 | 292 |
| Msa0025510 | MtrunA17_Chr1g0180131 | 66.038 | 159 | 54 | 0 | 1 | 159 | 1 | 159 | 5.70e-75 | 231 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025510 | AT3G53180.1 | 59.079 | 391 | 149 | 2 | 1 | 381 | 1 | 390 | 7.76e-163 | 478 |
Find 64 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAGGTTTACCTTGATTT+TGG | 0.127703 | 1_1:-48693901 | Msa0025510:intron |
| GAAGAATACAGAAGAATTTC+AGG | 0.206314 | 1_1:-48695645 | Msa0025510:CDS |
| CTACATCTTCTTGCTAAGTT+TGG | 0.245116 | 1_1:-48694329 | Msa0025510:CDS |
| ATAAGAATCTTACTTCATTT+AGG | 0.295647 | 1_1:+48695460 | None:intergenic |
| AAGAGTAACTTCTTATAATA+TGG | 0.308868 | 1_1:+48692697 | None:intergenic |
| CAATACAAAGGTGACTAAAA+AGG | 0.331853 | 1_1:-48694662 | Msa0025510:CDS |
| TTTCGATGATGGAATACATT+TGG | 0.335785 | 1_1:-48695568 | Msa0025510:CDS |
| ATGCCATGCACACTAAGTTT+TGG | 0.352841 | 1_1:+48693868 | None:intergenic |
| TTCCCTGAACTCTTCTACTT+AGG | 0.358843 | 1_1:-48693292 | Msa0025510:intron |
| GTTTACCAAATGGATCTTCA+TGG | 0.368939 | 1_1:-48694902 | Msa0025510:CDS |
| ATTAATAGCTTTGGTGATAG+AGG | 0.388711 | 1_1:-48694144 | Msa0025510:intron |
| CTCAAAGGAAGCATCATATC+TGG | 0.392897 | 1_1:-48694019 | Msa0025510:CDS |
| TCACCTTTGTATTGATGTCT+AGG | 0.409657 | 1_1:+48694671 | None:intergenic |
| ATACCTAAGTAGAAGAGTTC+AGG | 0.435758 | 1_1:+48693289 | None:intergenic |
| TATGATGCTTCCTTTGAGAA+TGG | 0.444647 | 1_1:+48694024 | None:intergenic |
| ACAATACTCTCTATCCTTCA+AGG | 0.444868 | 1_1:-48695847 | Msa0025510:intron |
| GGCATGAATCAAAGAAAAGT+TGG | 0.447258 | 1_1:+48695905 | None:intergenic |
| TTTGCAACTTCCACAGCCTC+CGG | 0.450044 | 1_1:+48692947 | None:intergenic |
| AGTCAACCGCAACTAAGTTA+TGG | 0.453520 | 1_1:+48695928 | None:intergenic |
| GTCAACCGCAACTAAGTTAT+GGG | 0.455053 | 1_1:+48695929 | None:intergenic |
| AGCTGAGGAGGGTCTGCAGC+AGG | 0.455514 | 1_1:-48694638 | Msa0025510:CDS |
| TGACGGCGATCTCACTGTTC+CGG | 0.464854 | 1_1:-48692966 | Msa0025510:CDS |
| GGTCTGCAGCAGGTGTTAGC+TGG | 0.478354 | 1_1:-48694628 | Msa0025510:intron |
| ACAAAATACTTGATACTGAA+TGG | 0.479708 | 1_1:-48695545 | Msa0025510:CDS |
| TTCCTGAAGGGTTTACCAAA+TGG | 0.483532 | 1_1:-48694912 | Msa0025510:intron |
| TCAGTTTCAGTTAATGTGAA+AGG | 0.485965 | 1_1:-48692746 | Msa0025510:three_prime_UTR |
| TCTCACTGTTCCGGAGGCTG+TGG | 0.486736 | 1_1:-48692957 | Msa0025510:CDS |
| AGAGATGTTGCTGAGTTGTA+TGG | 0.491934 | 1_1:-48695693 | Msa0025510:CDS |
| ATCACCATGTGCTAGGGAAA+AGG | 0.493560 | 1_1:+48695884 | None:intergenic |
| GTATGGATGCGAGTCAACTT+TGG | 0.493792 | 1_1:-48695676 | Msa0025510:CDS |
| CAACAGCATCACCATGTGCT+AGG | 0.493945 | 1_1:+48695877 | None:intergenic |
| AGCATAGCAGCATACTACTT+TGG | 0.496206 | 1_1:-48694694 | Msa0025510:CDS |
| ACTGTTGCTGATGAAATAGT+TGG | 0.496970 | 1_1:-48694724 | Msa0025510:CDS |
| AGAGTCCATGAAGATCCATT+TGG | 0.498028 | 1_1:+48694897 | None:intergenic |
| AAATGGATCTTCATGGACTC+TGG | 0.501778 | 1_1:-48694895 | Msa0025510:CDS |
| TACCTAAGTAGAAGAGTTCA+GGG | 0.512127 | 1_1:+48693290 | None:intergenic |
| CTGCGTGATTCATGCATTGA+CGG | 0.522814 | 1_1:-48692983 | Msa0025510:CDS |
| TTATCTCCACAATGTTCTTG+AGG | 0.525804 | 1_1:-48694094 | Msa0025510:CDS |
| TACCCTGTGTGTAGTTGCAT+TGG | 0.530303 | 1_1:+48694283 | None:intergenic |
| AGAACATTGTGGAGATAAAG+AGG | 0.534266 | 1_1:+48694099 | None:intergenic |
| AAAACTTAGTGTGCATGGCA+TGG | 0.551205 | 1_1:-48693866 | Msa0025510:CDS |
| ATTCCAAAACTTAGTGTGCA+TGG | 0.555321 | 1_1:-48693871 | Msa0025510:CDS |
| AACAGCATCACCATGTGCTA+GGG | 0.559698 | 1_1:+48695878 | None:intergenic |
| GAATAGCCAAGCCAAAATCA+AGG | 0.564793 | 1_1:+48693890 | None:intergenic |
| ACAATGTTCTTGAGGACAAG+AGG | 0.566181 | 1_1:-48694086 | Msa0025510:CDS |
| TCTGGCTTCTCTGTACTCCC+AGG | 0.578459 | 1_1:-48694001 | Msa0025510:intron |
| TTCAGGGAATGCATAGGCAT+CGG | 0.581808 | 1_1:+48693306 | None:intergenic |
| AATGCATGAATCACGCAGAA+CGG | 0.585693 | 1_1:+48692988 | None:intergenic |
| GTAGTTGCATTGGCAAGTCA+TGG | 0.597635 | 1_1:+48694293 | None:intergenic |
| GAAGAGTTCAGGGAATGCAT+AGG | 0.598920 | 1_1:+48693300 | None:intergenic |
| TAGTTGCATTGGCAAGTCAT+GGG | 0.599195 | 1_1:+48694294 | None:intergenic |
| TACATCATATCCATTCTCAA+AGG | 0.609323 | 1_1:-48694034 | Msa0025510:CDS |
| ATATGGCTGAAACATAACAT+TGG | 0.609602 | 1_1:+48692714 | None:intergenic |
| AGAGCAAGCTCCATTAAACA+AGG | 0.610108 | 1_1:-48693821 | Msa0025510:intron |
| CGGCGATCTCACTGTTCCGG+AGG | 0.613642 | 1_1:-48692963 | Msa0025510:CDS |
| GATTGAGGAGGTGGAACTTG+TGG | 0.613777 | 1_1:-48695961 | Msa0025510:CDS |
| TTGCCAATGCAACTACACAC+AGG | 0.626223 | 1_1:-48694286 | Msa0025510:CDS |
| TCATGCCCATAACTTAGTTG+CGG | 0.632976 | 1_1:-48695934 | Msa0025510:CDS |
| TCTTGTCCTCAAGAACATTG+TGG | 0.638906 | 1_1:+48694088 | None:intergenic |
| AAATAGAACATCATTGACAA+AGG | 0.649927 | 1_1:+48692819 | None:intergenic |
| TGCCAATGCAACTACACACA+GGG | 0.668406 | 1_1:-48694285 | Msa0025510:intron |
| GAGGAGGTGGAACTTGTGGA+TGG | 0.675286 | 1_1:-48695957 | Msa0025510:CDS |
| CTCACAAGTCTAGCAACATG+AGG | 0.676804 | 1_1:+48695507 | None:intergenic |
| TGGCCTAGACATCAATACAA+AGG | 0.679374 | 1_1:-48694674 | Msa0025510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTTAATAATAAAA+AGG | - | chr1_1:48694170-48694189 | Msa0025510:intron | 0.0% |
| !!! | AAATATTAGTAAATTTTGAT+TGG | - | chr1_1:48692958-48692977 | Msa0025510:CDS | 10.0% |
| !!! | ATTGATTTTTGATCATATTT+GGG | - | chr1_1:48694466-48694485 | Msa0025510:intron | 15.0% |
| !! | AAGTAATACAACTAAAAATT+TGG | - | chr1_1:48694910-48694929 | Msa0025510:intron | 15.0% |
| !!! | AATGTTTTGTTATTTCAAAA+TGG | - | chr1_1:48695259-48695278 | Msa0025510:intron | 15.0% |
| !!! | TCAATATAGTTTTGAAAATA+AGG | + | chr1_1:48695457-48695476 | None:intergenic | 15.0% |
| !! | ATAAGAATCTTACTTCATTT+AGG | + | chr1_1:48693243-48693262 | None:intergenic | 20.0% |
| !! | CTATAATTCTGTACAAAAAT+TGG | + | chr1_1:48693576-48693595 | None:intergenic | 20.0% |
| !! | TTAAAGTTCAATATTCTAGT+TGG | - | chr1_1:48693934-48693953 | Msa0025510:intron | 20.0% |
| !!! | AACATTATTTATTTGGTCTT+GGG | + | chr1_1:48694131-48694150 | None:intergenic | 20.0% |
| !! | AAACATTATTTATTTGGTCT+TGG | + | chr1_1:48694132-48694151 | None:intergenic | 20.0% |
| !! | AGACCAAATAAATAATGTTT+AGG | - | chr1_1:48694132-48694151 | Msa0025510:CDS | 20.0% |
| !! | ACATATATCAAAACCAATTT+AGG | + | chr1_1:48694266-48694285 | None:intergenic | 20.0% |
| !! | ATATGATCAAAAATCAATGA+AGG | + | chr1_1:48694464-48694483 | None:intergenic | 20.0% |
| !!! | CATTGATTTTTGATCATATT+TGG | - | chr1_1:48694465-48694484 | Msa0025510:intron | 20.0% |
| !! | CATTCTATTATTAATAGCTT+TGG | - | chr1_1:48694547-48694566 | Msa0025510:intron | 20.0% |
| !!! | TTTTTGAATACCTTGTTTAA+TGG | + | chr1_1:48694892-48694911 | None:intergenic | 20.0% |
| !! | ATGAAGTGACAAAAATATTT+CGG | - | chr1_1:48694946-48694965 | Msa0025510:intron | 20.0% |
| !! | TAAATCTGTCACTAAAATTA+GGG | + | chr1_1:48695084-48695103 | None:intergenic | 20.0% |
| !!! | AAGTCGTTTAAAATAATGTA+AGG | - | chr1_1:48695218-48695237 | Msa0025510:intron | 20.0% |
| !! | TATTAAAATTCTGTTATGTG+TGG | + | chr1_1:48695290-48695309 | None:intergenic | 20.0% |
| !! | CTTTCATTATTCAAAGTTAA+AGG | + | chr1_1:48695314-48695333 | None:intergenic | 20.0% |
| !! | CTACTTTCAAATATTACAAA+AGG | - | chr1_1:48695488-48695507 | Msa0025510:CDS | 20.0% |
| !! | TCATCTATCAATAATTCAAT+TGG | + | chr1_1:48695536-48695555 | None:intergenic | 20.0% |
| !!! | ATCATGAAATTTGTTTTAAC+AGG | - | chr1_1:48695660-48695679 | Msa0025510:CDS | 20.0% |
| !! | AAGAGTAACTTCTTATAATA+TGG | + | chr1_1:48696006-48696025 | None:intergenic | 20.0% |
| !!! | TAGAATGTTTTTTACCTTGA+AGG | + | chr1_1:48692870-48692889 | None:intergenic | 25.0% |
| !!! | TTTGATTGGTTATTTTGTGA+TGG | - | chr1_1:48692972-48692991 | Msa0025510:CDS | 25.0% |
| ! | ACAAAATACTTGATACTGAA+TGG | - | chr1_1:48693155-48693174 | Msa0025510:intron | 25.0% |
| !! | ATATATATGAGTATCGTGTT+TGG | + | chr1_1:48693326-48693345 | None:intergenic | 25.0% |
| ! | ATGAGTTTCATCCTATAAAA+GGG | - | chr1_1:48693474-48693493 | Msa0025510:intron | 25.0% |
| !!! | GTGATATGATTGATTTTTGT+AGG | - | chr1_1:48693595-48693614 | Msa0025510:intron | 25.0% |
| ! | TTATATTTAATGCTTCCTGA+AGG | - | chr1_1:48693775-48693794 | Msa0025510:intron | 25.0% |
| ! | TATATTTAATGCTTCCTGAA+GGG | - | chr1_1:48693776-48693795 | Msa0025510:intron | 25.0% |
| ! | GTGCCTAAACATTATTTATT+TGG | + | chr1_1:48694138-48694157 | None:intergenic | 25.0% |
| !! | CCAATTTAGGTATTTTTCTA+TGG | + | chr1_1:48694253-48694272 | None:intergenic | 25.0% |
| ! | CCATAGAAAAATACCTAAAT+TGG | - | chr1_1:48694250-48694269 | Msa0025510:intron | 25.0% |
| !!! | TGGTTTTGATATATGTTTCA+TGG | - | chr1_1:48694270-48694289 | Msa0025510:intron | 25.0% |
| ! | GTTTCATGGTATTAATAGTA+AGG | - | chr1_1:48694284-48694303 | Msa0025510:intron | 25.0% |
| ! | AGTTTAGTATCTTAAGTGAT+AGG | + | chr1_1:48694524-48694543 | None:intergenic | 25.0% |
| !!! | ATTTGTAGAGTTTTTTACCT+GGG | + | chr1_1:48694719-48694738 | None:intergenic | 25.0% |
| ! | AATTTACTTTGATGAAAAGC+CGG | - | chr1_1:48694972-48694991 | Msa0025510:intron | 25.0% |
| ! | TCATAAATCGATCTTTAAAC+CGG | + | chr1_1:48695041-48695060 | None:intergenic | 25.0% |
| ! | CTAAATCTGTCACTAAAATT+AGG | + | chr1_1:48695085-48695104 | None:intergenic | 25.0% |
| ! | ATCTAAATCTATTGCTAACT+TGG | - | chr1_1:48695128-48695147 | Msa0025510:intron | 25.0% |
| !! | TCTAAAGTAAAGTTTAAGGA+AGG | + | chr1_1:48695194-48695213 | None:intergenic | 25.0% |
| !!! | GAACTCTAAAGTAAAGTTTA+AGG | + | chr1_1:48695198-48695217 | None:intergenic | 25.0% |
| !! | TCAATAATTCAATTGGTTCA+AGG | + | chr1_1:48695529-48695548 | None:intergenic | 25.0% |
| ! | AAATAGAACATCATTGACAA+AGG | + | chr1_1:48695884-48695903 | None:intergenic | 25.0% |
| !!! | TTTTAGTTTTGTTCAAGTGT+TGG | - | chr1_1:48695928-48695947 | Msa0025510:CDS | 25.0% |
| TGTATTGAGAAAAACGATTG+AGG | - | chr1_1:48692724-48692743 | Msa0025510:three_prime_UTR | 30.0% | |
| GAAGAATACAGAAGAATTTC+AGG | - | chr1_1:48693055-48693074 | Msa0025510:intron | 30.0% | |
| ! | TCTACTGTAATTTTCGATGA+TGG | - | chr1_1:48693121-48693140 | Msa0025510:intron | 30.0% |
| !! | TTTCGATGATGGAATACATT+TGG | - | chr1_1:48693132-48693151 | Msa0025510:intron | 30.0% |
| !! | CATTTAGGATATTTTCAGCT+AGG | + | chr1_1:48693228-48693247 | None:intergenic | 30.0% |
| TTGTTCGTAACACTCATTAT+CGG | + | chr1_1:48693356-48693375 | None:intergenic | 30.0% | |
| TTATGAGATGAAACACATGT+GGG | - | chr1_1:48693408-48693427 | Msa0025510:intron | 30.0% | |
| CATGAGTTTCATCCTATAAA+AGG | - | chr1_1:48693473-48693492 | Msa0025510:intron | 30.0% | |
| TGAGTTTCATCCTATAAAAG+GGG | - | chr1_1:48693475-48693494 | Msa0025510:intron | 30.0% | |
| AACTTTCGCGACAAATTATA+AGG | - | chr1_1:48693631-48693650 | Msa0025510:intron | 30.0% | |
| TTAATTACTACTTGCTTGAG+TGG | + | chr1_1:48693663-48693682 | None:intergenic | 30.0% | |
| GTAGAGAGAGAATATTATGA+AGG | + | chr1_1:48693872-48693891 | None:intergenic | 30.0% | |
| CAATACAAAGGTGACTAAAA+AGG | - | chr1_1:48694038-48694057 | Msa0025510:CDS | 30.0% | |
| !! | ATGGTTTTACACACATAAAG+AGG | + | chr1_1:48694234-48694253 | None:intergenic | 30.0% |
| !! | ATTAATAGCTTTGGTGATAG+AGG | - | chr1_1:48694556-48694575 | Msa0025510:intron | 30.0% |
| TACATCATATCCATTCTCAA+AGG | - | chr1_1:48694666-48694685 | Msa0025510:CDS | 30.0% | |
| !!! | GATTTGTAGAGTTTTTTACC+TGG | + | chr1_1:48694720-48694739 | None:intergenic | 30.0% |
| AAACCTGAAGGATAAAGATT+GGG | + | chr1_1:48694789-48694808 | None:intergenic | 30.0% | |
| TAAACCTGAAGGATAAAGAT+TGG | + | chr1_1:48694790-48694809 | None:intergenic | 30.0% | |
| TTAGCGACTTATTTAGAAAC+CGG | + | chr1_1:48694994-48695013 | None:intergenic | 30.0% | |
| ATTAGGGAGTAATGATGTAT+AGG | + | chr1_1:48695068-48695087 | None:intergenic | 30.0% | |
| TCAGTTTCAGTTAATGTGAA+AGG | - | chr1_1:48695954-48695973 | Msa0025510:CDS | 30.0% | |
| ATATGGCTGAAACATAACAT+TGG | + | chr1_1:48695989-48696008 | None:intergenic | 30.0% | |
| ! | CATTCTCTCTCTTTTTGTCT+CGG | + | chr1_1:48692696-48692715 | None:intergenic | 35.0% |
| ATTGAGAAAAACGATTGAGG+AGG | - | chr1_1:48692727-48692746 | Msa0025510:three_prime_UTR | 35.0% | |
| GGCATGAATCAAAGAAAAGT+TGG | + | chr1_1:48692798-48692817 | None:intergenic | 35.0% | |
| ACAATACTCTCTATCCTTCA+AGG | - | chr1_1:48692853-48692872 | Msa0025510:three_prime_UTR | 35.0% | |
| !!! | ATGCTTTTTTAAATCCCTGC+TGG | - | chr1_1:48692889-48692908 | Msa0025510:exon | 35.0% |
| AAGAAAACTTTGTTCCAGCA+GGG | + | chr1_1:48692906-48692925 | None:intergenic | 35.0% | |
| AAAGAAAACTTTGTTCCAGC+AGG | + | chr1_1:48692907-48692926 | None:intergenic | 35.0% | |
| ATATTTCCTTGCAAGTTAGC+TGG | + | chr1_1:48692944-48692963 | None:intergenic | 35.0% | |
| !! | ATATCTATGAAGCATCGACA+TGG | - | chr1_1:48693297-48693316 | Msa0025510:CDS | 35.0% |
| GTTATGAGATGAAACACATG+TGG | - | chr1_1:48693407-48693426 | Msa0025510:intron | 35.0% | |
| TCGCGAAAGTTGTCTAAATT+TGG | + | chr1_1:48693622-48693641 | None:intergenic | 35.0% | |
| GTTTACCAAATGGATCTTCA+TGG | - | chr1_1:48693798-48693817 | Msa0025510:intron | 35.0% | |
| ! | TAAAGCATTTCTCTCCAAGT+TGG | - | chr1_1:48693838-48693857 | Msa0025510:CDS | 35.0% |
| TGAAGGATATGATTCCAACT+TGG | + | chr1_1:48693855-48693874 | None:intergenic | 35.0% | |
| ACTGTTGCTGATGAAATAGT+TGG | - | chr1_1:48693976-48693995 | Msa0025510:intron | 35.0% | |
| ! | TCACCTTTGTATTGATGTCT+AGG | + | chr1_1:48694032-48694051 | None:intergenic | 35.0% |
| !! | TTTTTGTTTGCTACCAACAC+AGG | + | chr1_1:48694342-48694361 | None:intergenic | 35.0% |
| !! | GTTGGTAGCAAACAAAAATC+TGG | - | chr1_1:48694344-48694363 | Msa0025510:CDS | 35.0% |
| CTACATCTTCTTGCTAAGTT+TGG | - | chr1_1:48694371-48694390 | Msa0025510:CDS | 35.0% | |
| ACTAAAGAGTAGCACTATAG+TGG | + | chr1_1:48694500-48694519 | None:intergenic | 35.0% | |
| AGAACATTGTGGAGATAAAG+AGG | + | chr1_1:48694604-48694623 | None:intergenic | 35.0% | |
| TTATCTCCACAATGTTCTTG+AGG | - | chr1_1:48694606-48694625 | Msa0025510:intron | 35.0% | |
| ! | TATGATGCTTCCTTTGAGAA+TGG | + | chr1_1:48694679-48694698 | None:intergenic | 35.0% |
| TAACCCAATCTTTATCCTTC+AGG | - | chr1_1:48694783-48694802 | Msa0025510:intron | 35.0% | |
| CAAAATCAAGGTAAACCTGA+AGG | + | chr1_1:48694801-48694820 | None:intergenic | 35.0% | |
| !! | CTTCAGGTTTACCTTGATTT+TGG | - | chr1_1:48694799-48694818 | Msa0025510:intron | 35.0% |
| ATTCCAAAACTTAGTGTGCA+TGG | - | chr1_1:48694829-48694848 | Msa0025510:intron | 35.0% | |
| AAGAGTAAACTTTGCATTGC+AGG | - | chr1_1:48695359-48695378 | Msa0025510:intron | 35.0% | |
| TACCTAAGTAGAAGAGTTCA+GGG | + | chr1_1:48695413-48695432 | None:intergenic | 35.0% | |
| ATACCTAAGTAGAAGAGTTC+AGG | + | chr1_1:48695414-48695433 | None:intergenic | 35.0% | |
| CGAGACAAAAAGAGAGAGAA+TGG | - | chr1_1:48692694-48692713 | Msa0025510:three_prime_UTR | 40.0% | |
| TCATGCCCATAACTTAGTTG+CGG | - | chr1_1:48692766-48692785 | Msa0025510:three_prime_UTR | 40.0% | |
| GTCAACCGCAACTAAGTTAT+GGG | + | chr1_1:48692774-48692793 | None:intergenic | 40.0% | |
| AGTCAACCGCAACTAAGTTA+TGG | + | chr1_1:48692775-48692794 | None:intergenic | 40.0% | |
| ! | TCAATACCAGCTAACTTGCA+AGG | - | chr1_1:48692935-48692954 | Msa0025510:CDS | 40.0% |
| AGAGATGTTGCTGAGTTGTA+TGG | - | chr1_1:48693007-48693026 | Msa0025510:CDS | 40.0% | |
| AAAGTAGATCCCGCATAAAG+TGG | - | chr1_1:48693443-48693462 | Msa0025510:intron | 40.0% | |
| ATGAGTCTCACCACTTTATG+CGG | + | chr1_1:48693456-48693475 | None:intergenic | 40.0% | |
| GTTTCATCCTATAAAAGGGG+CGG | - | chr1_1:48693478-48693497 | Msa0025510:intron | 40.0% | |
| TTCCTGAAGGGTTTACCAAA+TGG | - | chr1_1:48693788-48693807 | Msa0025510:intron | 40.0% | |
| ATCCATTTGGTAAACCCTTC+AGG | + | chr1_1:48693793-48693812 | None:intergenic | 40.0% | |
| AGAGTCCATGAAGATCCATT+TGG | + | chr1_1:48693806-48693825 | None:intergenic | 40.0% | |
| AAATGGATCTTCATGGACTC+TGG | - | chr1_1:48693805-48693824 | Msa0025510:intron | 40.0% | |
| CAACAGTAACAGTCATGCTA+AGG | + | chr1_1:48693963-48693982 | None:intergenic | 40.0% | |
| AGCATAGCAGCATACTACTT+TGG | - | chr1_1:48694006-48694025 | Msa0025510:CDS | 40.0% | |
| TGGCCTAGACATCAATACAA+AGG | - | chr1_1:48694026-48694045 | Msa0025510:CDS | 40.0% | |
| ACTAAAAAGGAAGCTGAGGA+GGG | - | chr1_1:48694051-48694070 | Msa0025510:CDS | 40.0% | |
| !! | TTCAGTTTTCAAGCCTGTGT+TGG | - | chr1_1:48694326-48694345 | Msa0025510:CDS | 40.0% |
| ! | TAGTTGCATTGGCAAGTCAT+GGG | + | chr1_1:48694409-48694428 | None:intergenic | 40.0% |
| TCTTGTCCTCAAGAACATTG+TGG | + | chr1_1:48694615-48694634 | None:intergenic | 40.0% | |
| ACAATGTTCTTGAGGACAAG+AGG | - | chr1_1:48694614-48694633 | Msa0025510:intron | 40.0% | |
| !! | CTCAAAGGAAGCATCATATC+TGG | - | chr1_1:48694681-48694700 | Msa0025510:CDS | 40.0% |
| !!! | GGTTTACCTTGATTTTGGCT+TGG | - | chr1_1:48694804-48694823 | Msa0025510:intron | 40.0% |
| GAATAGCCAAGCCAAAATCA+AGG | + | chr1_1:48694813-48694832 | None:intergenic | 40.0% | |
| ! | ATGCCATGCACACTAAGTTT+TGG | + | chr1_1:48694835-48694854 | None:intergenic | 40.0% |
| AAAACTTAGTGTGCATGGCA+TGG | - | chr1_1:48694834-48694853 | Msa0025510:intron | 40.0% | |
| AGAGCAAGCTCCATTAAACA+AGG | - | chr1_1:48694879-48694898 | Msa0025510:CDS | 40.0% | |
| TCCCTAAATGAGTTTGTGAC+CGG | - | chr1_1:48695019-48695038 | Msa0025510:intron | 40.0% | |
| ACCGGTCACAAACTCATTTA+GGG | + | chr1_1:48695023-48695042 | None:intergenic | 40.0% | |
| AACCGGTCACAAACTCATTT+AGG | + | chr1_1:48695024-48695043 | None:intergenic | 40.0% | |
| TTCCCTGAACTCTTCTACTT+AGG | - | chr1_1:48695408-48695427 | Msa0025510:intron | 40.0% | |
| AATGCATGAATCACGCAGAA+CGG | + | chr1_1:48695715-48695734 | None:intergenic | 40.0% | |
| GAGAAAAACGATTGAGGAGG+TGG | - | chr1_1:48692730-48692749 | Msa0025510:three_prime_UTR | 45.0% | |
| ATCACCATGTGCTAGGGAAA+AGG | + | chr1_1:48692819-48692838 | None:intergenic | 45.0% | |
| AACAGCATCACCATGTGCTA+GGG | + | chr1_1:48692825-48692844 | None:intergenic | 45.0% | |
| GTATGGATGCGAGTCAACTT+TGG | - | chr1_1:48693024-48693043 | Msa0025510:intron | 45.0% | |
| CTCACAAGTCTAGCAACATG+AGG | + | chr1_1:48693196-48693215 | None:intergenic | 45.0% | |
| TGAGTCTCACCACTTTATGC+GGG | + | chr1_1:48693455-48693474 | None:intergenic | 45.0% | |
| ! | AGTTCTACCGCCCCTTTTAT+AGG | + | chr1_1:48693488-48693507 | None:intergenic | 45.0% |
| AAAAGGGGCGGTAGAACTAA+CGG | - | chr1_1:48693490-48693509 | Msa0025510:intron | 45.0% | |
| GGTGACTAAAAAGGAAGCTG+AGG | - | chr1_1:48694047-48694066 | Msa0025510:CDS | 45.0% | |
| GACTAAAAAGGAAGCTGAGG+AGG | - | chr1_1:48694050-48694069 | Msa0025510:CDS | 45.0% | |
| CTGGTGAGTAGAGAATGAAG+TGG | - | chr1_1:48694091-48694110 | Msa0025510:CDS | 45.0% | |
| ! | GTAGTTGCATTGGCAAGTCA+TGG | + | chr1_1:48694410-48694429 | None:intergenic | 45.0% |
| TTGCCAATGCAACTACACAC+AGG | - | chr1_1:48694414-48694433 | Msa0025510:intron | 45.0% | |
| TGCCAATGCAACTACACACA+GGG | - | chr1_1:48694415-48694434 | Msa0025510:intron | 45.0% | |
| TACCCTGTGTGTAGTTGCAT+TGG | + | chr1_1:48694420-48694439 | None:intergenic | 45.0% | |
| TGCAACTACACACAGGGTAA+TGG | - | chr1_1:48694421-48694440 | Msa0025510:intron | 45.0% | |
| TTCAGGGAATGCATAGGCAT+CGG | + | chr1_1:48695397-48695416 | None:intergenic | 45.0% | |
| GAAGAGTTCAGGGAATGCAT+AGG | + | chr1_1:48695403-48695422 | None:intergenic | 45.0% | |
| CTGCGTGATTCATGCATTGA+CGG | - | chr1_1:48695717-48695736 | Msa0025510:intron | 45.0% | |
| GATTGAGGAGGTGGAACTTG+TGG | - | chr1_1:48692739-48692758 | Msa0025510:three_prime_UTR | 50.0% | |
| ! | CATGCCTTTTCCCTAGCACA+TGG | - | chr1_1:48692812-48692831 | Msa0025510:three_prime_UTR | 50.0% |
| CAACAGCATCACCATGTGCT+AGG | + | chr1_1:48692826-48692845 | None:intergenic | 50.0% | |
| AAAGGGGCGGTAGAACTAAC+GGG | - | chr1_1:48693491-48693510 | Msa0025510:intron | 50.0% | |
| TTTGCAACTTCCACAGCCTC+CGG | + | chr1_1:48695756-48695775 | None:intergenic | 50.0% | |
| GAGGAGGTGGAACTTGTGGA+TGG | - | chr1_1:48692743-48692762 | Msa0025510:three_prime_UTR | 55.0% | |
| GGCGGTAGAACTAACGGGAT+TGG | - | chr1_1:48693496-48693515 | Msa0025510:intron | 55.0% | |
| ! | TCTGGCTTCTCTGTACTCCC+AGG | - | chr1_1:48694699-48694718 | Msa0025510:CDS | 55.0% |
| TGACGGCGATCTCACTGTTC+CGG | - | chr1_1:48695734-48695753 | Msa0025510:intron | 55.0% | |
| GGTCTGCAGCAGGTGTTAGC+TGG | - | chr1_1:48694072-48694091 | Msa0025510:CDS | 60.0% | |
| TCTCACTGTTCCGGAGGCTG+TGG | - | chr1_1:48695743-48695762 | Msa0025510:intron | 60.0% | |
| AGCTGAGGAGGGTCTGCAGC+AGG | - | chr1_1:48694062-48694081 | Msa0025510:CDS | 65.0% | |
| CGGCGATCTCACTGTTCCGG+AGG | - | chr1_1:48695737-48695756 | Msa0025510:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 48692690 | 48696032 | 48692690 | ID=Msa0025510;Name=Msa0025510 |
| chr1_1 | mRNA | 48692690 | 48696032 | 48692690 | ID=Msa0025510-mRNA-1;Parent=Msa0025510;Name=Msa0025510-mRNA-1;_AED=0.12;_eAED=0.12;_QI=23|0.87|0.77|1|1|1|9|208|383 |
| chr1_1 | exon | 48692690 | 48693040 | 48692690 | ID=Msa0025510-mRNA-1:exon:14042;Parent=Msa0025510-mRNA-1 |
| chr1_1 | exon | 48693293 | 48693341 | 48693293 | ID=Msa0025510-mRNA-1:exon:14041;Parent=Msa0025510-mRNA-1 |
| chr1_1 | exon | 48693822 | 48693917 | 48693822 | ID=Msa0025510-mRNA-1:exon:14040;Parent=Msa0025510-mRNA-1 |
| chr1_1 | exon | 48694002 | 48694158 | 48694002 | ID=Msa0025510-mRNA-1:exon:14039;Parent=Msa0025510-mRNA-1 |
| chr1_1 | exon | 48694286 | 48694391 | 48694286 | ID=Msa0025510-mRNA-1:exon:14038;Parent=Msa0025510-mRNA-1 |
| chr1_1 | exon | 48694629 | 48694756 | 48694629 | ID=Msa0025510-mRNA-1:exon:14037;Parent=Msa0025510-mRNA-1 |
| chr1_1 | exon | 48694867 | 48694925 | 48694867 | ID=Msa0025510-mRNA-1:exon:14036;Parent=Msa0025510-mRNA-1 |
| chr1_1 | exon | 48695473 | 48695724 | 48695473 | ID=Msa0025510-mRNA-1:exon:14035;Parent=Msa0025510-mRNA-1 |
| chr1_1 | exon | 48695848 | 48696032 | 48695848 | ID=Msa0025510-mRNA-1:exon:14034;Parent=Msa0025510-mRNA-1 |
| chr1_1 | five_prime_UTR | 48696010 | 48696032 | 48696010 | ID=Msa0025510-mRNA-1:five_prime_utr;Parent=Msa0025510-mRNA-1 |
| chr1_1 | CDS | 48695848 | 48696009 | 48695848 | ID=Msa0025510-mRNA-1:cds;Parent=Msa0025510-mRNA-1 |
| chr1_1 | CDS | 48695473 | 48695724 | 48695473 | ID=Msa0025510-mRNA-1:cds;Parent=Msa0025510-mRNA-1 |
| chr1_1 | CDS | 48694867 | 48694925 | 48694867 | ID=Msa0025510-mRNA-1:cds;Parent=Msa0025510-mRNA-1 |
| chr1_1 | CDS | 48694629 | 48694756 | 48694629 | ID=Msa0025510-mRNA-1:cds;Parent=Msa0025510-mRNA-1 |
| chr1_1 | CDS | 48694286 | 48694391 | 48694286 | ID=Msa0025510-mRNA-1:cds;Parent=Msa0025510-mRNA-1 |
| chr1_1 | CDS | 48694002 | 48694158 | 48694002 | ID=Msa0025510-mRNA-1:cds;Parent=Msa0025510-mRNA-1 |
| chr1_1 | CDS | 48693822 | 48693917 | 48693822 | ID=Msa0025510-mRNA-1:cds;Parent=Msa0025510-mRNA-1 |
| chr1_1 | CDS | 48693293 | 48693341 | 48693293 | ID=Msa0025510-mRNA-1:cds;Parent=Msa0025510-mRNA-1 |
| chr1_1 | CDS | 48692898 | 48693040 | 48692898 | ID=Msa0025510-mRNA-1:cds;Parent=Msa0025510-mRNA-1 |
| chr1_1 | three_prime_UTR | 48692690 | 48692897 | 48692690 | ID=Msa0025510-mRNA-1:three_prime_utr;Parent=Msa0025510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
