Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166260 | XP_013468111.1 | 96.606 | 383 | 12 | 1 | 1 | 383 | 42 | 423 | 0.0 | 759 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166260 | sp|P38094|FLUG_EMENI | 30.435 | 414 | 245 | 14 | 3 | 381 | 4 | 409 | 1.18e-46 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166260 | O82700 | 96.606 | 383 | 12 | 1 | 1 | 383 | 38 | 419 | 0.0 | 759 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025510 | Msa0166260 | 0.930756 | 1.029093e-93 | -8.615850e-47 |
| Msa0095940 | Msa0166260 | 0.812352 | 4.426167e-51 | -8.615850e-47 |
| Msa0166260 | Msa0203090 | 0.818048 | 2.401335e-52 | -8.615850e-47 |
| Msa0166260 | Msa0242720 | 0.800775 | 1.230101e-48 | -8.615850e-47 |
| Msa0166260 | Msa0285890 | 0.804053 | 2.598545e-49 | -8.615850e-47 |
| Msa0166260 | Msa0303900 | 0.803907 | 2.786144e-49 | -8.615850e-47 |
| Msa0166260 | Msa0320170 | 0.813368 | 2.651550e-51 | -8.615850e-47 |
| Msa0166260 | Msa0442860 | 0.812185 | 4.814772e-51 | -8.615850e-47 |
| Msa0166260 | Msa0490100 | 0.801390 | 9.210825e-49 | -8.615850e-47 |
| Msa0166260 | Msa0490320 | 0.834605 | 2.721275e-56 | -8.615850e-47 |
| Msa0166260 | Msa0497690 | 0.804750 | 1.859917e-49 | -8.615850e-47 |
| Msa0166260 | Msa0522140 | 0.802415 | 5.672980e-49 | -8.615850e-47 |
| Msa0166260 | Msa0548410 | 0.804090 | 2.552157e-49 | -8.615850e-47 |
| Msa0166260 | Msa0548420 | 0.802695 | 4.966454e-49 | -8.615850e-47 |
| Msa0166260 | Msa0603310 | 0.802131 | 6.489896e-49 | -8.615850e-47 |
| Msa0166260 | Msa0611060 | 0.809275 | 2.050823e-50 | -8.615850e-47 |
| Msa0166260 | Msa0618550 | 0.805316 | 1.416069e-49 | -8.615850e-47 |
| Msa0166260 | Msa0626920 | 0.808159 | 3.551013e-50 | -8.615850e-47 |
| Msa0166260 | Msa0699390 | 0.803848 | 2.866029e-49 | -8.615850e-47 |
| Msa0166260 | Msa0744640 | 0.804473 | 2.124680e-49 | -8.615850e-47 |
| Msa0166260 | Msa0833270 | 0.811832 | 5.748067e-51 | -8.615850e-47 |
| Msa0166260 | Msa0841730 | 0.804127 | 2.507263e-49 | -8.615850e-47 |
| Msa0166260 | Msa0901270 | 0.825097 | 5.645328e-54 | -8.615850e-47 |
| Msa0166260 | Msa0966580 | 0.838929 | 2.147536e-57 | -8.615850e-47 |
| Msa0166260 | Msa1001120 | 0.802290 | 6.017516e-49 | -8.615850e-47 |
| Msa0166260 | Msa1027340 | 0.859959 | 2.881583e-63 | -8.615850e-47 |
| Msa0166260 | Msa1027400 | 0.863506 | 2.371662e-64 | -8.615850e-47 |
| Msa0166260 | Msa1034950 | 0.806535 | 7.845496e-50 | -8.615850e-47 |
| Msa0166260 | Msa1075010 | 0.807426 | 5.085408e-50 | -8.615850e-47 |
| Msa0166260 | Msa1077970 | 0.810659 | 1.032721e-50 | -8.615850e-47 |
| Msa0166260 | Msa1107220 | 0.801052 | 1.080063e-48 | -8.615850e-47 |
| Msa0166260 | Msa1150760 | 0.808232 | 3.426041e-50 | -8.615850e-47 |
| Msa0166260 | Msa1154570 | 0.859164 | 4.996689e-63 | -8.615850e-47 |
| Msa0166260 | Msa1157110 | 0.808274 | 3.356695e-50 | -8.615850e-47 |
| Msa0166260 | Msa1202110 | 0.809881 | 1.519371e-50 | -8.615850e-47 |
| Msa0166260 | Msa1221270 | 0.811136 | 8.142566e-51 | -8.615850e-47 |
| Msa0166260 | Msa1254870 | 0.808606 | 2.851697e-50 | -8.615850e-47 |
| Msa0166260 | Msa1328430 | 0.807630 | 4.601847e-50 | -8.615850e-47 |
| Msa0166260 | Msa1404050 | 0.831115 | 2.003799e-55 | -8.615850e-47 |
| Msa0166260 | Msa1405530 | 0.814135 | 1.797602e-51 | -8.615850e-47 |
| Msa0166260 | Msa1459920 | 0.825179 | 5.398251e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166260 | MtrunA17_Chr1g0180191 | 69.091 | 385 | 116 | 1 | 1 | 382 | 1 | 385 | 0.0 | 565 |
| Msa0166260 | MtrunA17_Chr1g0180251 | 98.667 | 225 | 3 | 0 | 159 | 383 | 1 | 225 | 1.21e-163 | 457 |
| Msa0166260 | MtrunA17_Chr1g0180241 | 94.969 | 159 | 8 | 0 | 1 | 159 | 42 | 200 | 6.72e-108 | 315 |
| Msa0166260 | MtrunA17_Chr1g0180151 | 69.192 | 198 | 58 | 1 | 184 | 381 | 4 | 198 | 1.86e-92 | 290 |
| Msa0166260 | MtrunA17_Chr1g0180131 | 66.038 | 159 | 54 | 0 | 1 | 159 | 1 | 159 | 5.89e-75 | 231 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166260 | AT3G53180.1 | 58.824 | 391 | 150 | 2 | 1 | 381 | 1 | 390 | 2.69e-162 | 477 |
Find 65 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAGGTTTACCTTGATTT+TGG | 0.127703 | 1_4:-47494767 | Msa0166260:intron |
| GAAGAATACAGAAGAATTTC+AGG | 0.206314 | 1_4:-47496512 | Msa0166260:CDS |
| CTACATCTTCTTGCTAAGTT+TGG | 0.245116 | 1_4:-47495195 | Msa0166260:CDS |
| ATAAGAATCTTACTTCATTT+AGG | 0.295647 | 1_4:+47496327 | None:intergenic |
| AAGAGTAACTTCTTATAATA+TGG | 0.308868 | 1_4:+47493561 | None:intergenic |
| CAATACAAAGGTGACTAAAA+AGG | 0.331853 | 1_4:-47495529 | Msa0166260:CDS |
| TTTCGATGATGGAATACATT+TGG | 0.335785 | 1_4:-47496435 | Msa0166260:CDS |
| ATGCCATGCACACTAAGTTT+TGG | 0.352841 | 1_4:+47494734 | None:intergenic |
| TTCCCTGAACTCTTCTACTT+AGG | 0.358843 | 1_4:-47494158 | Msa0166260:intron |
| GTTTACCAAATGGATCTTCA+TGG | 0.368939 | 1_4:-47495769 | Msa0166260:CDS |
| CTCAAAGGAAGCATCATATC+TGG | 0.392897 | 1_4:-47494885 | Msa0166260:CDS |
| TCACCTTTGTATTGATGTCT+AGG | 0.409657 | 1_4:+47495538 | None:intergenic |
| ATACCTAAGTAGAAGAGTTC+AGG | 0.435758 | 1_4:+47494155 | None:intergenic |
| TATGATGCTTCCTTTGAGAA+TGG | 0.444647 | 1_4:+47494890 | None:intergenic |
| ACAATACTCTCTATCCTTCA+AGG | 0.444868 | 1_4:-47496717 | Msa0166260:intron |
| GATAATAGCTTTGGTGATAG+AGG | 0.447127 | 1_4:-47495010 | Msa0166260:intron |
| GGCATGAATCAAAGAAAAGT+TGG | 0.447258 | 1_4:+47496775 | None:intergenic |
| TTTGCAACTTCCACAGCCTC+CGG | 0.450044 | 1_4:+47493811 | None:intergenic |
| AGTCAACCGCAACTAAGTTA+TGG | 0.453520 | 1_4:+47496798 | None:intergenic |
| GTCAACCGCAACTAAGTTAT+GGG | 0.455053 | 1_4:+47496799 | None:intergenic |
| AGCTGAGGAGGGTCTGCAGC+AGG | 0.455514 | 1_4:-47495505 | Msa0166260:CDS |
| TGTTAAGACTTCATATTATG+TGG | 0.457290 | 1_4:-47493712 | Msa0166260:three_prime_UTR |
| TGACGGCGATCTCACTGTTC+CGG | 0.464854 | 1_4:-47493830 | Msa0166260:CDS |
| GGTCTGCAGCAGGTGTTAGC+TGG | 0.478354 | 1_4:-47495495 | Msa0166260:intron |
| ACAAAATACTTGATACTGAA+TGG | 0.479708 | 1_4:-47496412 | Msa0166260:CDS |
| TTCCTGAAGGGTTTACCAAA+TGG | 0.483532 | 1_4:-47495779 | Msa0166260:intron |
| TCAGTTTCAGTTAATGTGAA+AGG | 0.485965 | 1_4:-47493610 | Msa0166260:three_prime_UTR |
| TCTCACTGTTCCGGAGGCTG+TGG | 0.486736 | 1_4:-47493821 | Msa0166260:CDS |
| GTATGGATGCGAGTCAACTT+TGG | 0.493792 | 1_4:-47496543 | Msa0166260:CDS |
| AGCATAGCAGCATACTACTT+TGG | 0.496206 | 1_4:-47495561 | Msa0166260:CDS |
| ACTGTTGCTGATGAAATAGT+TGG | 0.496970 | 1_4:-47495591 | Msa0166260:CDS |
| ATCACCATGGGCTAGAGAAA+AGG | 0.497107 | 1_4:+47496754 | None:intergenic |
| AGAGTCCATGAAGATCCATT+TGG | 0.498028 | 1_4:+47495764 | None:intergenic |
| AAATGGATCTTCATGGACTC+TGG | 0.501778 | 1_4:-47495762 | Msa0166260:CDS |
| TACCTAAGTAGAAGAGTTCA+GGG | 0.512127 | 1_4:+47494156 | None:intergenic |
| CTGCGTGATTCATGCATTGA+CGG | 0.522814 | 1_4:-47493847 | Msa0166260:CDS |
| TTATCTCCACAATGTTCTTG+AGG | 0.525804 | 1_4:-47494960 | Msa0166260:CDS |
| TACCCTGTGTGTAGTTGCAT+TGG | 0.530303 | 1_4:+47495149 | None:intergenic |
| AGAGATGTAGCTGAGTTGTA+TGG | 0.533489 | 1_4:-47496560 | Msa0166260:CDS |
| AGAACATTGTGGAGATAAAG+AGG | 0.534266 | 1_4:+47494965 | None:intergenic |
| AAAACTTAGTGTGCATGGCA+TGG | 0.551205 | 1_4:-47494732 | Msa0166260:CDS |
| ATTCCAAAACTTAGTGTGCA+TGG | 0.555321 | 1_4:-47494737 | Msa0166260:CDS |
| GAATAGCCAAGCCAAAATCA+AGG | 0.564793 | 1_4:+47494756 | None:intergenic |
| ACAATGTTCTTGAGGACAAG+AGG | 0.566181 | 1_4:-47494952 | Msa0166260:CDS |
| TCTGGCTTCTCTGTACTCCC+AGG | 0.578459 | 1_4:-47494867 | Msa0166260:intron |
| TTCAGGGAATGCATAGGCAT+CGG | 0.581808 | 1_4:+47494172 | None:intergenic |
| AATGCATGAATCACGCAGAA+CGG | 0.585693 | 1_4:+47493852 | None:intergenic |
| GTAGTTGCATTGGCAAGTCA+TGG | 0.597635 | 1_4:+47495159 | None:intergenic |
| GAAGAGTTCAGGGAATGCAT+AGG | 0.598920 | 1_4:+47494166 | None:intergenic |
| TAGTTGCATTGGCAAGTCAT+GGG | 0.599195 | 1_4:+47495160 | None:intergenic |
| TACATCATATCCATTCTCAA+AGG | 0.609323 | 1_4:-47494900 | Msa0166260:CDS |
| ATATGGCTGAAACATAACAT+TGG | 0.609602 | 1_4:+47493578 | None:intergenic |
| AGAGCAAGCTCCATTAAACA+AGG | 0.610108 | 1_4:-47494687 | Msa0166260:intron |
| CGGCGATCTCACTGTTCCGG+AGG | 0.613642 | 1_4:-47493827 | Msa0166260:CDS |
| GATTGAGGAGGTGGAACTTG+TGG | 0.613777 | 1_4:-47496831 | Msa0166260:CDS |
| TTGAAGCAACAGCATCACCA+TGG | 0.613806 | 1_4:+47496741 | None:intergenic |
| TTGCCAATGCAACTACACAC+AGG | 0.626223 | 1_4:-47495152 | Msa0166260:CDS |
| TCATGCCCATAACTTAGTTG+CGG | 0.632976 | 1_4:-47496804 | Msa0166260:CDS |
| TCTTGTCCTCAAGAACATTG+TGG | 0.638906 | 1_4:+47494954 | None:intergenic |
| TGAAGCAACAGCATCACCAT+GGG | 0.641832 | 1_4:+47496742 | None:intergenic |
| AAATAGAACATCATTGACAA+AGG | 0.649927 | 1_4:+47493683 | None:intergenic |
| TGCCAATGCAACTACACACA+GGG | 0.668406 | 1_4:-47495151 | Msa0166260:intron |
| GAGGAGGTGGAACTTGTGGA+TGG | 0.675286 | 1_4:-47496827 | Msa0166260:CDS |
| CTCACAAGTCTAGCAACATG+AGG | 0.676804 | 1_4:+47496374 | None:intergenic |
| TGGCCTAGACATCAATACAA+AGG | 0.679374 | 1_4:-47495541 | Msa0166260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTTAATAATAAAA+AGG | - | chr1_4:47495038-47495057 | Msa0166260:intron | 0.0% |
| !!! | AAATATTAGTAAATTTTGAT+TGG | - | chr1_4:47493825-47493844 | Msa0166260:CDS | 10.0% |
| !!! | ATTGATTTTTGATCATATTT+GGG | - | chr1_4:47495334-47495353 | Msa0166260:intron | 15.0% |
| !! | AAGTAATACAACTAAAAATT+TGG | - | chr1_4:47495778-47495797 | Msa0166260:intron | 15.0% |
| !!! | AATGTTTTGTTATTTCAAAA+TGG | - | chr1_4:47496127-47496146 | Msa0166260:intron | 15.0% |
| !!! | TCAATATAGTTTTGAAAATA+AGG | + | chr1_4:47496325-47496344 | None:intergenic | 15.0% |
| !! | ATAAGAATCTTACTTCATTT+AGG | + | chr1_4:47494110-47494129 | None:intergenic | 20.0% |
| !! | CTATAATTCTGTACAAAAAT+TGG | + | chr1_4:47494443-47494462 | None:intergenic | 20.0% |
| !! | TTAAAGTTCAATATTCTAGT+TGG | - | chr1_4:47494801-47494820 | Msa0166260:intron | 20.0% |
| !!! | AACATTATTTATTTGGTCTT+GGG | + | chr1_4:47494998-47495017 | None:intergenic | 20.0% |
| !! | AAACATTATTTATTTGGTCT+TGG | + | chr1_4:47494999-47495018 | None:intergenic | 20.0% |
| !! | AGACCAAATAAATAATGTTT+AGG | - | chr1_4:47494999-47495018 | Msa0166260:CDS | 20.0% |
| !! | ACATATATCAAAACCAATTT+AGG | + | chr1_4:47495134-47495153 | None:intergenic | 20.0% |
| !! | ATATGATCAAAAATCAATGA+AGG | + | chr1_4:47495332-47495351 | None:intergenic | 20.0% |
| !!! | CATTGATTTTTGATCATATT+TGG | - | chr1_4:47495333-47495352 | Msa0166260:intron | 20.0% |
| !!! | TTTTTGAATACCTTGTTTAA+TGG | + | chr1_4:47495760-47495779 | None:intergenic | 20.0% |
| !! | ATGAAGTGACAAAAATATTT+CGG | - | chr1_4:47495814-47495833 | Msa0166260:intron | 20.0% |
| !! | TAAATCTGTCACTAAAATTA+GGG | + | chr1_4:47495952-47495971 | None:intergenic | 20.0% |
| !!! | AAGTCGTTTAAAATAATGTA+AGG | - | chr1_4:47496086-47496105 | Msa0166260:intron | 20.0% |
| !! | TATTAAAATTCTGTTATGTG+TGG | + | chr1_4:47496158-47496177 | None:intergenic | 20.0% |
| !! | CTTTCATTATTCAAAGTTAA+AGG | + | chr1_4:47496182-47496201 | None:intergenic | 20.0% |
| !! | CTACTTTCAAATATTACAAA+AGG | - | chr1_4:47496356-47496375 | Msa0166260:CDS | 20.0% |
| !!! | ACAATAATTCAATTGATTCA+AGG | + | chr1_4:47496397-47496416 | None:intergenic | 20.0% |
| !!! | ATCATGAAATTTGTTTTAAC+AGG | - | chr1_4:47496530-47496549 | Msa0166260:CDS | 20.0% |
| !! | AAGAGTAACTTCTTATAATA+TGG | + | chr1_4:47496876-47496895 | None:intergenic | 20.0% |
| !!! | TAGAATGTTTTTTACCTTGA+AGG | + | chr1_4:47493734-47493753 | None:intergenic | 25.0% |
| !!! | TTTGATTGGTTATTTTGTGA+TGG | - | chr1_4:47493839-47493858 | Msa0166260:CDS | 25.0% |
| ! | ACAAAATACTTGATACTGAA+TGG | - | chr1_4:47494022-47494041 | Msa0166260:intron | 25.0% |
| !! | ATATATATGAGTATCGTGTT+TGG | + | chr1_4:47494193-47494212 | None:intergenic | 25.0% |
| ! | ATGAGTTTCATCCTATAAAA+GGG | - | chr1_4:47494341-47494360 | Msa0166260:intron | 25.0% |
| !!! | GTGATATGATTGATTTTTGT+AGG | - | chr1_4:47494462-47494481 | Msa0166260:intron | 25.0% |
| ! | TTATATTTAATGCTTCCTGA+AGG | - | chr1_4:47494642-47494661 | Msa0166260:intron | 25.0% |
| ! | TATATTTAATGCTTCCTGAA+GGG | - | chr1_4:47494643-47494662 | Msa0166260:intron | 25.0% |
| ! | GTGCCTAAACATTATTTATT+TGG | + | chr1_4:47495005-47495024 | None:intergenic | 25.0% |
| !! | CCAATTTAGGTATTTTTCTA+TGG | + | chr1_4:47495121-47495140 | None:intergenic | 25.0% |
| ! | CCATAGAAAAATACCTAAAT+TGG | - | chr1_4:47495118-47495137 | Msa0166260:intron | 25.0% |
| !!! | TGGTTTTGATATATGTTTCA+TGG | - | chr1_4:47495138-47495157 | Msa0166260:intron | 25.0% |
| ! | GTTTCATGGTATTAATAGTA+AGG | - | chr1_4:47495152-47495171 | Msa0166260:CDS | 25.0% |
| ! | AGATTAGTATCTTAAGTGAT+AGG | + | chr1_4:47495392-47495411 | None:intergenic | 25.0% |
| !! | CTTTCTATTGATAATAGCTT+TGG | - | chr1_4:47495415-47495434 | Msa0166260:intron | 25.0% |
| !!! | ATTTGTAGAGTTTTTTACCT+GGG | + | chr1_4:47495587-47495606 | None:intergenic | 25.0% |
| ! | AATTTACTTTGATGAAAAGC+CGG | - | chr1_4:47495840-47495859 | Msa0166260:intron | 25.0% |
| ! | TCATAAATCGATCTTTAAAC+CGG | + | chr1_4:47495909-47495928 | None:intergenic | 25.0% |
| ! | CTAAATCTGTCACTAAAATT+AGG | + | chr1_4:47495953-47495972 | None:intergenic | 25.0% |
| ! | ATCTAAATCTATTGCTAACT+TGG | - | chr1_4:47495996-47496015 | Msa0166260:intron | 25.0% |
| ! | TCTAAAGAAAAGTTTAAGGA+AGG | + | chr1_4:47496062-47496081 | None:intergenic | 25.0% |
| !! | GAACTCTAAAGAAAAGTTTA+AGG | + | chr1_4:47496066-47496085 | None:intergenic | 25.0% |
| ! | TGTTAAGACTTCATATTATG+TGG | - | chr1_4:47496722-47496741 | Msa0166260:CDS | 25.0% |
| ! | AAATAGAACATCATTGACAA+AGG | + | chr1_4:47496754-47496773 | None:intergenic | 25.0% |
| !!! | TTTTAGTTTTGTTCAAGTGT+TGG | - | chr1_4:47496798-47496817 | Msa0166260:CDS | 25.0% |
| TGTATTGAGAAAAACGATTG+AGG | - | chr1_4:47493588-47493607 | Msa0166260:three_prime_UTR | 30.0% | |
| GAAGAATACAGAAGAATTTC+AGG | - | chr1_4:47493922-47493941 | Msa0166260:intron | 30.0% | |
| ! | TCTACTGTAATTTTCGATGA+TGG | - | chr1_4:47493988-47494007 | Msa0166260:intron | 30.0% |
| !! | TTTCGATGATGGAATACATT+TGG | - | chr1_4:47493999-47494018 | Msa0166260:intron | 30.0% |
| !! | CATTTAGGATATTTTCAGCT+AGG | + | chr1_4:47494095-47494114 | None:intergenic | 30.0% |
| TTGTTCGTAACACTCATTAT+CGG | + | chr1_4:47494223-47494242 | None:intergenic | 30.0% | |
| TTATGAGATGAAACACATGT+GGG | - | chr1_4:47494275-47494294 | Msa0166260:intron | 30.0% | |
| CATGAGTTTCATCCTATAAA+AGG | - | chr1_4:47494340-47494359 | Msa0166260:intron | 30.0% | |
| TGAGTTTCATCCTATAAAAG+GGG | - | chr1_4:47494342-47494361 | Msa0166260:intron | 30.0% | |
| AACTTTCGCGACAAATTATA+AGG | - | chr1_4:47494498-47494517 | Msa0166260:intron | 30.0% | |
| TTAATTACTACTTGCTTGAG+TGG | + | chr1_4:47494530-47494549 | None:intergenic | 30.0% | |
| GTAGAGAGAGAATATTATGA+AGG | + | chr1_4:47494739-47494758 | None:intergenic | 30.0% | |
| CAATACAAAGGTGACTAAAA+AGG | - | chr1_4:47494905-47494924 | Msa0166260:CDS | 30.0% | |
| !! | ATGGTTTTACACACATAAAG+AGG | + | chr1_4:47495102-47495121 | None:intergenic | 30.0% |
| TACATCATATCCATTCTCAA+AGG | - | chr1_4:47495534-47495553 | Msa0166260:CDS | 30.0% | |
| !!! | GATTTGTAGAGTTTTTTACC+TGG | + | chr1_4:47495588-47495607 | None:intergenic | 30.0% |
| AAACCTGAAGGATAAAGATT+GGG | + | chr1_4:47495657-47495676 | None:intergenic | 30.0% | |
| TAAACCTGAAGGATAAAGAT+TGG | + | chr1_4:47495658-47495677 | None:intergenic | 30.0% | |
| TTAGCGACTTATTTAGAAAC+CGG | + | chr1_4:47495862-47495881 | None:intergenic | 30.0% | |
| ATTAGGGAGTAATGATGTAT+AGG | + | chr1_4:47495936-47495955 | None:intergenic | 30.0% | |
| TCAGTTTCAGTTAATGTGAA+AGG | - | chr1_4:47496824-47496843 | Msa0166260:CDS | 30.0% | |
| ATATGGCTGAAACATAACAT+TGG | + | chr1_4:47496859-47496878 | None:intergenic | 30.0% | |
| ! | CATTCTCTCTCTTTTTGTCT+CGG | + | chr1_4:47493560-47493579 | None:intergenic | 35.0% |
| ATTGAGAAAAACGATTGAGG+AGG | - | chr1_4:47493591-47493610 | Msa0166260:three_prime_UTR | 35.0% | |
| GGCATGAATCAAAGAAAAGT+TGG | + | chr1_4:47493662-47493681 | None:intergenic | 35.0% | |
| ACAATACTCTCTATCCTTCA+AGG | - | chr1_4:47493717-47493736 | Msa0166260:three_prime_UTR | 35.0% | |
| !!! | ATGCTTTTTTAAATCCCTGC+TGG | - | chr1_4:47493753-47493772 | Msa0166260:exon | 35.0% |
| AAGAAAACTTTGTTCCAGCA+GGG | + | chr1_4:47493770-47493789 | None:intergenic | 35.0% | |
| AAAGAAAACTTTGTTCCAGC+AGG | + | chr1_4:47493771-47493790 | None:intergenic | 35.0% | |
| !! | ATATCTATGAAGCATCGACA+TGG | - | chr1_4:47494164-47494183 | Msa0166260:CDS | 35.0% |
| GTTATGAGATGAAACACATG+TGG | - | chr1_4:47494274-47494293 | Msa0166260:intron | 35.0% | |
| TCGCGAAAGTTGTCTAAATT+TGG | + | chr1_4:47494489-47494508 | None:intergenic | 35.0% | |
| GTTTACCAAATGGATCTTCA+TGG | - | chr1_4:47494665-47494684 | Msa0166260:intron | 35.0% | |
| ! | TAAAGCATTTCTCTCCAAGT+TGG | - | chr1_4:47494705-47494724 | Msa0166260:CDS | 35.0% |
| TGAAGGATATGATTCCAACT+TGG | + | chr1_4:47494722-47494741 | None:intergenic | 35.0% | |
| ACTGTTGCTGATGAAATAGT+TGG | - | chr1_4:47494843-47494862 | Msa0166260:intron | 35.0% | |
| ! | TCACCTTTGTATTGATGTCT+AGG | + | chr1_4:47494899-47494918 | None:intergenic | 35.0% |
| !! | TTTTTGTTTGCTACCAACAC+AGG | + | chr1_4:47495210-47495229 | None:intergenic | 35.0% |
| !! | GTTGGTAGCAAACAAAAATC+TGG | - | chr1_4:47495212-47495231 | Msa0166260:CDS | 35.0% |
| CTACATCTTCTTGCTAAGTT+TGG | - | chr1_4:47495239-47495258 | Msa0166260:intron | 35.0% | |
| ACTAAAGAGTAGCACTATAG+TGG | + | chr1_4:47495368-47495387 | None:intergenic | 35.0% | |
| !! | GATAATAGCTTTGGTGATAG+AGG | - | chr1_4:47495424-47495443 | Msa0166260:intron | 35.0% |
| AGAACATTGTGGAGATAAAG+AGG | + | chr1_4:47495472-47495491 | None:intergenic | 35.0% | |
| TTATCTCCACAATGTTCTTG+AGG | - | chr1_4:47495474-47495493 | Msa0166260:intron | 35.0% | |
| ! | TATGATGCTTCCTTTGAGAA+TGG | + | chr1_4:47495547-47495566 | None:intergenic | 35.0% |
| TAACCCAATCTTTATCCTTC+AGG | - | chr1_4:47495651-47495670 | Msa0166260:intron | 35.0% | |
| CAAAATCAAGGTAAACCTGA+AGG | + | chr1_4:47495669-47495688 | None:intergenic | 35.0% | |
| !! | CTTCAGGTTTACCTTGATTT+TGG | - | chr1_4:47495667-47495686 | Msa0166260:intron | 35.0% |
| ATTCCAAAACTTAGTGTGCA+TGG | - | chr1_4:47495697-47495716 | Msa0166260:intron | 35.0% | |
| AAGAGTAAACTTTGCATTGC+AGG | - | chr1_4:47496227-47496246 | Msa0166260:intron | 35.0% | |
| TACCTAAGTAGAAGAGTTCA+GGG | + | chr1_4:47496281-47496300 | None:intergenic | 35.0% | |
| ATACCTAAGTAGAAGAGTTC+AGG | + | chr1_4:47496282-47496301 | None:intergenic | 35.0% | |
| CGAGACAAAAAGAGAGAGAA+TGG | - | chr1_4:47493558-47493577 | Msa0166260:three_prime_UTR | 40.0% | |
| TCATGCCCATAACTTAGTTG+CGG | - | chr1_4:47493630-47493649 | Msa0166260:three_prime_UTR | 40.0% | |
| GTCAACCGCAACTAAGTTAT+GGG | + | chr1_4:47493638-47493657 | None:intergenic | 40.0% | |
| AGTCAACCGCAACTAAGTTA+TGG | + | chr1_4:47493639-47493658 | None:intergenic | 40.0% | |
| !! | ATACCAGCTAACTTGTTGCA+AGG | - | chr1_4:47493802-47493821 | Msa0166260:CDS | 40.0% |
| TTTCCTTGCAACAAGTTAGC+TGG | + | chr1_4:47493808-47493827 | None:intergenic | 40.0% | |
| AGAGATGTAGCTGAGTTGTA+TGG | - | chr1_4:47493874-47493893 | Msa0166260:CDS | 40.0% | |
| AAAGTAGATCCCGCATAAAG+TGG | - | chr1_4:47494310-47494329 | Msa0166260:intron | 40.0% | |
| ATGAGTCTCACCACTTTATG+CGG | + | chr1_4:47494323-47494342 | None:intergenic | 40.0% | |
| !! | AACCAATCCCGTTAGTTCTA+CGG | + | chr1_4:47494368-47494387 | None:intergenic | 40.0% |
| TTCCTGAAGGGTTTACCAAA+TGG | - | chr1_4:47494655-47494674 | Msa0166260:intron | 40.0% | |
| ATCCATTTGGTAAACCCTTC+AGG | + | chr1_4:47494660-47494679 | None:intergenic | 40.0% | |
| AGAGTCCATGAAGATCCATT+TGG | + | chr1_4:47494673-47494692 | None:intergenic | 40.0% | |
| AAATGGATCTTCATGGACTC+TGG | - | chr1_4:47494672-47494691 | Msa0166260:intron | 40.0% | |
| CAACAGTAACAGTCATGCTA+AGG | + | chr1_4:47494830-47494849 | None:intergenic | 40.0% | |
| AGCATAGCAGCATACTACTT+TGG | - | chr1_4:47494873-47494892 | Msa0166260:CDS | 40.0% | |
| TGGCCTAGACATCAATACAA+AGG | - | chr1_4:47494893-47494912 | Msa0166260:CDS | 40.0% | |
| ACTAAAAAGGAAGCTGAGGA+GGG | - | chr1_4:47494918-47494937 | Msa0166260:CDS | 40.0% | |
| !! | TTCAGTTTTCAAGCCTGTGT+TGG | - | chr1_4:47495194-47495213 | Msa0166260:CDS | 40.0% |
| ! | TAGTTGCATTGGCAAGTCAT+GGG | + | chr1_4:47495277-47495296 | None:intergenic | 40.0% |
| TCTTGTCCTCAAGAACATTG+TGG | + | chr1_4:47495483-47495502 | None:intergenic | 40.0% | |
| ACAATGTTCTTGAGGACAAG+AGG | - | chr1_4:47495482-47495501 | Msa0166260:intron | 40.0% | |
| !! | CTCAAAGGAAGCATCATATC+TGG | - | chr1_4:47495549-47495568 | Msa0166260:CDS | 40.0% |
| !!! | GGTTTACCTTGATTTTGGCT+TGG | - | chr1_4:47495672-47495691 | Msa0166260:intron | 40.0% |
| GAATAGCCAAGCCAAAATCA+AGG | + | chr1_4:47495681-47495700 | None:intergenic | 40.0% | |
| ! | ATGCCATGCACACTAAGTTT+TGG | + | chr1_4:47495703-47495722 | None:intergenic | 40.0% |
| AAAACTTAGTGTGCATGGCA+TGG | - | chr1_4:47495702-47495721 | Msa0166260:intron | 40.0% | |
| AGAGCAAGCTCCATTAAACA+AGG | - | chr1_4:47495747-47495766 | Msa0166260:CDS | 40.0% | |
| TCCCTAAATGAGTTTGTGAC+CGG | - | chr1_4:47495887-47495906 | Msa0166260:intron | 40.0% | |
| ACCGGTCACAAACTCATTTA+GGG | + | chr1_4:47495891-47495910 | None:intergenic | 40.0% | |
| AACCGGTCACAAACTCATTT+AGG | + | chr1_4:47495892-47495911 | None:intergenic | 40.0% | |
| TTCCCTGAACTCTTCTACTT+AGG | - | chr1_4:47496276-47496295 | Msa0166260:intron | 40.0% | |
| AATGCATGAATCACGCAGAA+CGG | + | chr1_4:47496585-47496604 | None:intergenic | 40.0% | |
| GAGAAAAACGATTGAGGAGG+TGG | - | chr1_4:47493594-47493613 | Msa0166260:three_prime_UTR | 45.0% | |
| !! | ATCACCATGGGCTAGAGAAA+AGG | + | chr1_4:47493683-47493702 | None:intergenic | 45.0% |
| TGAAGCAACAGCATCACCAT+GGG | + | chr1_4:47493695-47493714 | None:intergenic | 45.0% | |
| TTGAAGCAACAGCATCACCA+TGG | + | chr1_4:47493696-47493715 | None:intergenic | 45.0% | |
| GTATGGATGCGAGTCAACTT+TGG | - | chr1_4:47493891-47493910 | Msa0166260:intron | 45.0% | |
| CTCACAAGTCTAGCAACATG+AGG | + | chr1_4:47494063-47494082 | None:intergenic | 45.0% | |
| TGAGTCTCACCACTTTATGC+GGG | + | chr1_4:47494322-47494341 | None:intergenic | 45.0% | |
| ! | AGTTCTACGGCCCCTTTTAT+AGG | + | chr1_4:47494355-47494374 | None:intergenic | 45.0% |
| AAAAGGGGCCGTAGAACTAA+CGG | - | chr1_4:47494357-47494376 | Msa0166260:intron | 45.0% | |
| GGTGACTAAAAAGGAAGCTG+AGG | - | chr1_4:47494914-47494933 | Msa0166260:CDS | 45.0% | |
| GACTAAAAAGGAAGCTGAGG+AGG | - | chr1_4:47494917-47494936 | Msa0166260:CDS | 45.0% | |
| CTGGTGAGTAGAGAATGAAG+TGG | - | chr1_4:47494958-47494977 | Msa0166260:CDS | 45.0% | |
| ! | GTAGTTGCATTGGCAAGTCA+TGG | + | chr1_4:47495278-47495297 | None:intergenic | 45.0% |
| TTGCCAATGCAACTACACAC+AGG | - | chr1_4:47495282-47495301 | Msa0166260:intron | 45.0% | |
| TGCCAATGCAACTACACACA+GGG | - | chr1_4:47495283-47495302 | Msa0166260:intron | 45.0% | |
| TACCCTGTGTGTAGTTGCAT+TGG | + | chr1_4:47495288-47495307 | None:intergenic | 45.0% | |
| TGCAACTACACACAGGGTAA+TGG | - | chr1_4:47495289-47495308 | Msa0166260:intron | 45.0% | |
| TTCAGGGAATGCATAGGCAT+CGG | + | chr1_4:47496265-47496284 | None:intergenic | 45.0% | |
| GAAGAGTTCAGGGAATGCAT+AGG | + | chr1_4:47496271-47496290 | None:intergenic | 45.0% | |
| CTGCGTGATTCATGCATTGA+CGG | - | chr1_4:47496587-47496606 | Msa0166260:intron | 45.0% | |
| GATTGAGGAGGTGGAACTTG+TGG | - | chr1_4:47493603-47493622 | Msa0166260:three_prime_UTR | 50.0% | |
| ! | CATGCCTTTTCTCTAGCCCA+TGG | - | chr1_4:47493676-47493695 | Msa0166260:three_prime_UTR | 50.0% |
| AAAGGGGCCGTAGAACTAAC+GGG | - | chr1_4:47494358-47494377 | Msa0166260:intron | 50.0% | |
| TTTGCAACTTCCACAGCCTC+CGG | + | chr1_4:47496626-47496645 | None:intergenic | 50.0% | |
| GAGGAGGTGGAACTTGTGGA+TGG | - | chr1_4:47493607-47493626 | Msa0166260:three_prime_UTR | 55.0% | |
| GGCCGTAGAACTAACGGGAT+TGG | - | chr1_4:47494363-47494382 | Msa0166260:intron | 55.0% | |
| ! | TCTGGCTTCTCTGTACTCCC+AGG | - | chr1_4:47495567-47495586 | Msa0166260:CDS | 55.0% |
| TGACGGCGATCTCACTGTTC+CGG | - | chr1_4:47496604-47496623 | Msa0166260:intron | 55.0% | |
| GGTCTGCAGCAGGTGTTAGC+TGG | - | chr1_4:47494939-47494958 | Msa0166260:CDS | 60.0% | |
| TCTCACTGTTCCGGAGGCTG+TGG | - | chr1_4:47496613-47496632 | Msa0166260:intron | 60.0% | |
| AGCTGAGGAGGGTCTGCAGC+AGG | - | chr1_4:47494929-47494948 | Msa0166260:CDS | 65.0% | |
| CGGCGATCTCACTGTTCCGG+AGG | - | chr1_4:47496607-47496626 | Msa0166260:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 47493554 | 47496902 | 47493554 | ID=Msa0166260;Name=Msa0166260 |
| chr1_4 | mRNA | 47493554 | 47496902 | 47493554 | ID=Msa0166260-mRNA-1;Parent=Msa0166260;Name=Msa0166260-mRNA-1;_AED=0.12;_eAED=0.12;_QI=23|0.87|0.77|1|1|1|9|208|383 |
| chr1_4 | exon | 47493554 | 47493904 | 47493554 | ID=Msa0166260-mRNA-1:exon:13737;Parent=Msa0166260-mRNA-1 |
| chr1_4 | exon | 47494159 | 47494207 | 47494159 | ID=Msa0166260-mRNA-1:exon:13736;Parent=Msa0166260-mRNA-1 |
| chr1_4 | exon | 47494688 | 47494783 | 47494688 | ID=Msa0166260-mRNA-1:exon:13735;Parent=Msa0166260-mRNA-1 |
| chr1_4 | exon | 47494868 | 47495024 | 47494868 | ID=Msa0166260-mRNA-1:exon:13734;Parent=Msa0166260-mRNA-1 |
| chr1_4 | exon | 47495152 | 47495257 | 47495152 | ID=Msa0166260-mRNA-1:exon:13733;Parent=Msa0166260-mRNA-1 |
| chr1_4 | exon | 47495496 | 47495623 | 47495496 | ID=Msa0166260-mRNA-1:exon:13732;Parent=Msa0166260-mRNA-1 |
| chr1_4 | exon | 47495734 | 47495792 | 47495734 | ID=Msa0166260-mRNA-1:exon:13731;Parent=Msa0166260-mRNA-1 |
| chr1_4 | exon | 47496340 | 47496591 | 47496340 | ID=Msa0166260-mRNA-1:exon:13730;Parent=Msa0166260-mRNA-1 |
| chr1_4 | exon | 47496718 | 47496902 | 47496718 | ID=Msa0166260-mRNA-1:exon:13729;Parent=Msa0166260-mRNA-1 |
| chr1_4 | five_prime_UTR | 47496880 | 47496902 | 47496880 | ID=Msa0166260-mRNA-1:five_prime_utr;Parent=Msa0166260-mRNA-1 |
| chr1_4 | CDS | 47496718 | 47496879 | 47496718 | ID=Msa0166260-mRNA-1:cds;Parent=Msa0166260-mRNA-1 |
| chr1_4 | CDS | 47496340 | 47496591 | 47496340 | ID=Msa0166260-mRNA-1:cds;Parent=Msa0166260-mRNA-1 |
| chr1_4 | CDS | 47495734 | 47495792 | 47495734 | ID=Msa0166260-mRNA-1:cds;Parent=Msa0166260-mRNA-1 |
| chr1_4 | CDS | 47495496 | 47495623 | 47495496 | ID=Msa0166260-mRNA-1:cds;Parent=Msa0166260-mRNA-1 |
| chr1_4 | CDS | 47495152 | 47495257 | 47495152 | ID=Msa0166260-mRNA-1:cds;Parent=Msa0166260-mRNA-1 |
| chr1_4 | CDS | 47494868 | 47495024 | 47494868 | ID=Msa0166260-mRNA-1:cds;Parent=Msa0166260-mRNA-1 |
| chr1_4 | CDS | 47494688 | 47494783 | 47494688 | ID=Msa0166260-mRNA-1:cds;Parent=Msa0166260-mRNA-1 |
| chr1_4 | CDS | 47494159 | 47494207 | 47494159 | ID=Msa0166260-mRNA-1:cds;Parent=Msa0166260-mRNA-1 |
| chr1_4 | CDS | 47493762 | 47493904 | 47493762 | ID=Msa0166260-mRNA-1:cds;Parent=Msa0166260-mRNA-1 |
| chr1_4 | three_prime_UTR | 47493554 | 47493761 | 47493554 | ID=Msa0166260-mRNA-1:three_prime_utr;Parent=Msa0166260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
