AlfalfaGEDB | Msa1404050

M. sativa cultivar zhongmu-4 / Msa1404050

KEGG: -
GO: GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016597 GO:0031406 GO:0033993 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043177 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0097305 GO:1901700
PFAM: PF01842.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404050	XP_003611221.1	97.959	441	9	0	1	441	1	441	0.0	895

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404050	sp\|Q9LNA5\|ACR8_ARATH	67.720	443	139	3	1	441	1	441	0.0	595

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404050	G7KG51	97.959	441	9	0	1	441	1	441	0.0	895

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa1404050	0.826208	3.077320e-54	-8.615850e-47
Msa0009640	Msa1404050	0.839751	1.313792e-57	-8.615850e-47
Msa0014280	Msa1404050	0.804550	2.046827e-49	-8.615850e-47
Msa0025510	Msa1404050	0.817848	2.665591e-52	-8.615850e-47
Msa0027020	Msa1404050	-0.807961	3.913849e-50	-8.615850e-47
Msa0034540	Msa1404050	0.811040	8.541908e-51	-8.615850e-47
Msa0043740	Msa1404050	0.802446	5.589827e-49	-8.615850e-47
Msa0046020	Msa1404050	-0.803616	3.201706e-49	-8.615850e-47
Msa0051960	Msa1404050	0.828137	1.062477e-54	-8.615850e-47
Msa0052580	Msa1404050	0.828743	7.587317e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404050	MtrunA17_Chr5g0398581	97.959	441	9	0	1	441	1	441	0.0	895
Msa1404050	MtrunA17_Chr4g0056741	77.098	441	101	0	1	441	1	441	0.0	724
Msa1404050	MtrunA17_Chr7g0222461	50.889	450	195	5	8	441	12	451	3.54e-151	437
Msa1404050	MtrunA17_Chr7g0224571	49.330	448	205	5	8	441	3	442	8.33e-147	425
Msa1404050	MtrunA17_Chr5g0420221	50.000	442	204	3	8	441	19	451	4.16e-146	424
Msa1404050	MtrunA17_Chr1g0159541	46.793	421	200	6	3	399	6	426	4.50e-128	378
Msa1404050	MtrunA17_Chr3g0125661	45.880	449	216	8	3	431	6	447	2.53e-127	376
Msa1404050	MtrunA17_Chr5g0400941	42.105	418	205	7	9	391	12	427	6.26e-107	325
Msa1404050	MtrunA17_Chr4g0054261	38.128	438	227	7	2	399	24	457	2.16e-90	283

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404050	AT1G12420.1	67.720	443	139	3	1	441	1	441	0.0	595
Msa1404050	AT4G22780.1	59.333	450	169	6	1	439	1	447	0.0	530
Msa1404050	AT4G22780.2	59.333	450	169	6	1	439	1	447	0.0	530
Msa1404050	AT1G12420.2	67.116	371	118	3	73	441	1	369	5.52e-175	494
Msa1404050	AT1G69040.1	48.780	451	206	5	8	441	9	451	1.57e-146	425
Msa1404050	AT1G69040.2	48.780	451	206	5	8	441	13	455	2.00e-146	425
Msa1404050	AT3G01990.7	52.163	393	178	3	8	391	18	409	3.71e-138	404
Msa1404050	AT3G01990.5	52.163	393	178	3	8	391	18	409	3.71e-138	404
Msa1404050	AT3G01990.11	52.163	393	178	3	8	391	4	395	4.89e-138	403
Msa1404050	AT3G01990.10	52.163	393	178	3	8	391	4	395	5.22e-138	403

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Find 98 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTCTGTGGAGAGAA+GGG	0.546145	tig0022985:-74303	Msa1404050:CDS
AAATAGTAACCAAGCTTACT+TGG	0.448187	tig0022985:-74495	Msa1404050:intron
AACAAAGCGTGCTTTGTGTC+AGG	0.447392	tig0022985:-76484	Msa1404050:five_prime_UTR
AACAGGTTATTAGTGCAAGA+AGG	0.528541	tig0022985:-75431	Msa1404050:intron
AACCCCTTTCTGCCCAATTC+TGG	0.223295	tig0022985:+74624	None:intergenic
AACTTAGTTTGAGTTAGTTA+AGG	0.427624	tig0022985:-76415	Msa1404050:five_prime_UTR
AAGCGCAGTGAGACCGTTTG+AGG	0.464728	tig0022985:+75006	None:intergenic
AAGGCTTATATATCTTCTGA+TGG	0.568126	tig0022985:-75351	Msa1404050:CDS
AAGTTTAGAATGATGGAATT+TGG	0.265152	tig0022985:-73765	Msa1404050:three_prime_UTR
AATAGTGGTTCTAGTTGGTT+TGG	0.434881	tig0022985:-73734	Msa1404050:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATACCACAAAGAAAAACA+TGG	-	tig0022985:73774-73793	Msa1404050:three_prime_UTR	30.0%
CAAGGAAAATTAACAAACCT+GGG	+	tig0022985:73853-73872	None:intergenic	30.0%
TCAAGGAAAATTAACAAACC+TGG	+	tig0022985:73854-73873	None:intergenic	30.0%
ACGTATAAACTACATGATCA+AGG	+	tig0022985:73871-73890	None:intergenic	30.0%
GGATTGATCTTAAATACTCT+AGG	-	tig0022985:73894-73913	Msa1404050:CDS	30.0%
GGATCGAATTAAGAATGAAA+TGG	+	tig0022985:74044-74063	None:intergenic	30.0%
TCATTCTTAATTCGATCCAT+CGG	-	tig0022985:74046-74065	Msa1404050:CDS	30.0%
GTAACTTAGATTCATTCAAG+GGG	+	tig0022985:74107-74126	None:intergenic	30.0%
GGTAACTTAGATTCATTCAA+GGG	+	tig0022985:74108-74127	None:intergenic	30.0%
AGGTAACTTAGATTCATTCA+AGG	+	tig0022985:74109-74128	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022985	gene	73597	76519	73597	ID=Msa1404050;Name=Msa1404050
tig0022985	mRNA	73597	76519	73597	ID=Msa1404050-mRNA-1;Parent=Msa1404050;Name=Msa1404050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=196\|1\|1\|1\|1\|1\|7\|249\|441
tig0022985	exon	73597	74208	73597	ID=Msa1404050-mRNA-1:exon:19568;Parent=Msa1404050-mRNA-1
tig0022985	exon	74295	74399	74295	ID=Msa1404050-mRNA-1:exon:19567;Parent=Msa1404050-mRNA-1
tig0022985	exon	74496	75062	74496	ID=Msa1404050-mRNA-1:exon:19566;Parent=Msa1404050-mRNA-1
tig0022985	exon	75154	75221	75154	ID=Msa1404050-mRNA-1:exon:19565;Parent=Msa1404050-mRNA-1
tig0022985	exon	75334	75448	75334	ID=Msa1404050-mRNA-1:exon:19564;Parent=Msa1404050-mRNA-1
tig0022985	exon	75554	75599	75554	ID=Msa1404050-mRNA-1:exon:19563;Parent=Msa1404050-mRNA-1
tig0022985	exon	76262	76519	76262	ID=Msa1404050-mRNA-1:exon:19562;Parent=Msa1404050-mRNA-1
tig0022985	five_prime_UTR	76324	76519	76324	ID=Msa1404050-mRNA-1:five_prime_utr;Parent=Msa1404050-mRNA-1
tig0022985	CDS	76262	76323	76262	ID=Msa1404050-mRNA-1:cds;Parent=Msa1404050-mRNA-1
tig0022985	CDS	75554	75599	75554	ID=Msa1404050-mRNA-1:cds;Parent=Msa1404050-mRNA-1
tig0022985	CDS	75334	75448	75334	ID=Msa1404050-mRNA-1:cds;Parent=Msa1404050-mRNA-1
tig0022985	CDS	75154	75221	75154	ID=Msa1404050-mRNA-1:cds;Parent=Msa1404050-mRNA-1
tig0022985	CDS	74496	75062	74496	ID=Msa1404050-mRNA-1:cds;Parent=Msa1404050-mRNA-1
tig0022985	CDS	74295	74399	74295	ID=Msa1404050-mRNA-1:cds;Parent=Msa1404050-mRNA-1
tig0022985	CDS	73846	74208	73846	ID=Msa1404050-mRNA-1:cds;Parent=Msa1404050-mRNA-1
tig0022985	three_prime_UTR	73597	73845	73597	ID=Msa1404050-mRNA-1:three_prime_utr;Parent=Msa1404050-mRNA-1

Gene Sequence

>Msa1404050

ATGGAGTGGCCAGCATGTACGGATGAATATGAAAAGCTCTTAATAAGGATGAGCACACCCAGGGTTGTGATTGACAATGCCGTGTGCTCTACTGCTACTCTGGTCAAGGTTATTAGTGCAAGAAGGAATGGTAGTTTACTTAATGCAATACAAGTACTCATTGATCTTAATCTTTTAATTAAGAAGGCTTATATATCTTCTGATGGCAAATGGTTCATGGATGTTTTCCACATCACTCATCAAAATGGAAGCAAGATAATCGACGAGAACATTTTAAAATATATAGAACAGTCGCTTGGGAGCATTCATAACGTGAGAACTAATTCCTCAAACGGTCTCACTGCGCTTGAATTATCAGGAACCGATAGAGTTGGTCTTCTGTCGGAGGTGTTTGCCGTACTTGCTGATCTTCAATGTGATGTTGATGAAGCTAAGGTGTGGACTCACAACGGTCGCATTGCCTCTTTGATCTATGTTAAAGACTGCGATTCTGGATCCACTATTGAGGATTCTCAGAAAATTAAAAAGATTGAAGTGCGTTTAAGAAACGTTTTGAAGGGAGACAATGACATTAGAAGTGCAAAGACTTCTGTTTCTATGTCTGTTATGCATAGCGAAAGAAGGCTGCATCAAATGATGTTCGCTGATCGTGACTACGAGAGGACTCCCATTCTCAAGCTTACTTCCGATAACACTGTAGTGACGGTCCAGAATTGGGCAGAAAGGGGTTATTCCGTTGTGAATGTTCAGTGCAAGGATCGAATCAAACTATTATTTGATGTGGTATGCAATTTGACAGACATGGAGTATGTTGTGTTTCATGCGACCATCAACACAAATAGTAACCAAGCTTACTTGGAGTTTTATATAAGACACAAGGATGGCACCCCAATTAGTTCAGAACCAGAGCGACAACGCGTAATTCAATGTTTAAAAGCTTCTGTGGAGAGAAGGGCATCTGAGGGTGTTCAACTAAAGTTATGCACAGAAGACAAGCAAGGGCTTCTAGCAGAAGTGATGCGAACCTTCCGAGAGAATGGGCTTAATGTTACAAGAGCCGAGATATCCACCATAGAAAACATGGCTACAAATGTTTTCTATGTAACAGACGTGACTGGAAAACCAGCTGATCCAACAACCATAGAGTCTGTTAGGCAGAAGATTGGTTCAAGCAATTTAGAAGTGAAGGAGTTACCATTGATTTATCATCAGAAGACAGAGAGAGAGGATCAAACAGTTGGAATTGGCGGTGCAGTGCTATGGTCTATTGGGAGCCTTGTGAGAAGGAATCTGTATAGTTTGGGATTAATTAAATCATGTTCTTAA

Protein sequence

>Msa1404050

MEWPACTDEYEKLLIRMSTPRVVIDNAVCSTATLVKVISARRNGSLLNAIQVLIDLNLLIKKAYISSDGKWFMDVFHITHQNGSKIIDENILKYIEQSLGSIHNVRTNSSNGLTALELSGTDRVGLLSEVFAVLADLQCDVDEAKVWTHNGRIASLIYVKDCDSGSTIEDSQKIKKIEVRLRNVLKGDNDIRSAKTSVSMSVMHSERRLHQMMFADRDYERTPILKLTSDNTVVTVQNWAERGYSVVNVQCKDRIKLLFDVVCNLTDMEYVVFHATINTNSNQAYLEFYIRHKDGTPISSEPERQRVIQCLKASVERRASEGVQLKLCTEDKQGLLAEVMRTFRENGLNVTRAEISTIENMATNVFYVTDVTGKPADPTTIESVRQKIGSSNLEVKELPLIYHQKTEREDQTVGIGGAVLWSIGSLVRRNLYSLGLIKSCS*