AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1404050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404050 MtrunA17_Chr5g0398581 97.959 441 9 0 1 441 1 441 0.0 895
Msa1404050 MtrunA17_Chr4g0056741 77.098 441 101 0 1 441 1 441 0.0 724
Msa1404050 MtrunA17_Chr7g0222461 50.889 450 195 5 8 441 12 451 3.54e-151 437
Msa1404050 MtrunA17_Chr7g0224571 49.330 448 205 5 8 441 3 442 8.33e-147 425
Msa1404050 MtrunA17_Chr5g0420221 50.000 442 204 3 8 441 19 451 4.16e-146 424
Msa1404050 MtrunA17_Chr1g0159541 46.793 421 200 6 3 399 6 426 4.50e-128 378
Msa1404050 MtrunA17_Chr3g0125661 45.880 449 216 8 3 431 6 447 2.53e-127 376
Msa1404050 MtrunA17_Chr5g0400941 42.105 418 205 7 9 391 12 427 6.26e-107 325
Msa1404050 MtrunA17_Chr4g0054261 38.128 438 227 7 2 399 24 457 2.16e-90 283
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404050 AT1G12420.1 67.720 443 139 3 1 441 1 441 0.0 595
Msa1404050 AT4G22780.1 59.333 450 169 6 1 439 1 447 0.0 530
Msa1404050 AT4G22780.2 59.333 450 169 6 1 439 1 447 0.0 530
Msa1404050 AT1G12420.2 67.116 371 118 3 73 441 1 369 5.52e-175 494
Msa1404050 AT1G69040.1 48.780 451 206 5 8 441 9 451 1.57e-146 425
Msa1404050 AT1G69040.2 48.780 451 206 5 8 441 13 455 2.00e-146 425
Msa1404050 AT3G01990.7 52.163 393 178 3 8 391 18 409 3.71e-138 404
Msa1404050 AT3G01990.5 52.163 393 178 3 8 391 18 409 3.71e-138 404
Msa1404050 AT3G01990.11 52.163 393 178 3 8 391 4 395 4.89e-138 403
Msa1404050 AT3G01990.10 52.163 393 178 3 8 391 4 395 5.22e-138 403
Msa1404050 AT3G01990.1 52.163 393 178 3 8 391 4 395 5.22e-138 403
Msa1404050 AT3G01990.6 52.163 393 178 3 8 391 18 409 5.74e-138 403
Msa1404050 AT1G76990.4 45.759 448 218 7 3 431 6 447 4.34e-132 389
Msa1404050 AT1G76990.5 45.759 448 218 7 3 431 6 447 4.34e-132 389
Msa1404050 AT1G76990.2 45.759 448 218 7 3 431 6 447 4.34e-132 389
Msa1404050 AT1G76990.3 45.759 448 218 7 3 431 6 447 4.34e-132 389
Msa1404050 AT1G76990.1 45.759 448 218 7 3 431 6 447 4.34e-132 389
Msa1404050 AT2G03730.2 47.253 455 206 8 8 439 13 456 2.72e-131 387
Msa1404050 AT2G03730.1 47.253 455 206 8 8 439 13 456 2.72e-131 387
Msa1404050 AT3G01990.4 51.220 328 150 3 8 326 18 344 8.79e-109 325
Msa1404050 AT3G01990.9 51.220 328 150 3 8 326 4 330 1.13e-108 324
Msa1404050 AT5G25320.1 38.739 444 221 7 3 396 6 448 4.23e-108 329
Msa1404050 AT3G01990.2 51.393 323 147 3 8 321 18 339 1.39e-107 322
Msa1404050 AT5G25320.3 39.024 410 201 6 35 396 1 409 2.70e-102 312
Msa1404050 AT5G65890.1 39.192 421 223 4 4 391 8 428 5.39e-99 305
Msa1404050 AT5G65890.3 39.192 421 223 4 4 391 8 428 5.39e-99 305
Msa1404050 AT5G65890.4 38.933 375 196 4 50 391 2 376 4.74e-88 275
Msa1404050 AT5G65890.2 38.933 375 196 4 50 391 2 376 4.74e-88 275
Msa1404050 AT3G01990.8 48.780 287 137 3 8 285 4 289 7.17e-86 265
Msa1404050 AT3G01990.3 48.780 287 137 3 8 285 18 303 7.82e-86 265
Msa1404050 AT5G25320.2 37.669 369 179 7 3 321 6 373 1.60e-83 261
Msa1404050 AT5G65890.5 38.514 296 164 2 114 391 19 314 1.41e-67 220
Msa1404050 AT2G39570.1 25.430 291 192 11 32 305 20 302 1.04e-11 67.0

Find 98 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTCTGGTTCTGAACTAAT+TGG 0.190192 tig0022985:+74347 None:intergenic
AACCCCTTTCTGCCCAATTC+TGG 0.223295 tig0022985:+74624 None:intergenic
TATGTTAAAGACTGCGATTC+TGG 0.254803 tig0022985:-74860 Msa1404050:CDS
AAGTTTAGAATGATGGAATT+TGG 0.265152 tig0022985:-73765 Msa1404050:three_prime_UTR
CAGAATTGGACAGAACAAAT+TGG 0.271471 tig0022985:-73647 Msa1404050:three_prime_UTR
GAGAAGGAATCTGTATAGTT+TGG 0.274326 tig0022985:-73869 Msa1404050:CDS
TTCCACATCACTCATCAAAA+TGG 0.335568 tig0022985:-75197 Msa1404050:CDS
CTTCTGCCTAACAGACTCTA+TGG 0.349251 tig0022985:+74011 None:intergenic
CTCACTGCGCTTGAATTATC+AGG 0.356914 tig0022985:-74995 Msa1404050:CDS
GTAATACAGAATTGGATTCT+TGG 0.358541 tig0022985:-73694 Msa1404050:three_prime_UTR
AATATGAAAAGCTCTTAATA+AGG 0.358985 tig0022985:-76276 Msa1404050:CDS
CTGTAGTGACGGTCCAGAAT+TGG 0.362155 tig0022985:-74637 Msa1404050:CDS
TTGGTTACTATTTGTGTTGA+TGG 0.365674 tig0022985:+74505 None:intergenic
TGAATTACGCGTTGTCGCTC+TGG 0.374088 tig0022985:+74332 None:intergenic
GCTCTGGTTCTGAACTAATT+GGG 0.377900 tig0022985:+74348 None:intergenic
GGTGCAGTGCTATGGTCTAT+TGG 0.392338 tig0022985:-73901 Msa1404050:CDS
TCTATGGTTGTTGGATCAGC+TGG 0.393817 tig0022985:+74027 None:intergenic
AGAAGGAATCTGTATAGTTT+GGG 0.393916 tig0022985:-73868 Msa1404050:CDS
ATTGGGTTCATTGTTCATCT+AGG 0.394563 tig0022985:-73629 Msa1404050:three_prime_UTR
AGATGAAAGTAATACAGAAT+TGG 0.398079 tig0022985:-73702 Msa1404050:three_prime_UTR
GTGCAGTGCTATGGTCTATT+GGG 0.398825 tig0022985:-73900 Msa1404050:CDS
TCATTGTTCATCTAGGACTT+TGG 0.412217 tig0022985:-73622 Msa1404050:three_prime_UTR
GACCGTCACTACAGTGTTAT+CGG 0.418171 tig0022985:+74646 None:intergenic
AACTTAGTTTGAGTTAGTTA+AGG 0.427624 tig0022985:-76415 Msa1404050:five_prime_UTR
TTCTGATGGCAAATGGTTCA+TGG 0.431070 tig0022985:-75337 Msa1404050:CDS
AATAGTGGTTCTAGTTGGTT+TGG 0.434881 tig0022985:-73734 Msa1404050:three_prime_UTR
TAAGGTTGTTTGTGACGATT+TGG 0.436535 tig0022985:-76397 Msa1404050:five_prime_UTR
GAGGATCAAACAGTTGGAAT+TGG 0.438200 tig0022985:-73925 Msa1404050:CDS
TGTAGTGACGGTCCAGAATT+GGG 0.443034 tig0022985:-74636 Msa1404050:CDS
GGTCCAGAATTGGGCAGAAA+GGG 0.446856 tig0022985:-74627 Msa1404050:CDS
AACAAAGCGTGCTTTGTGTC+AGG 0.447392 tig0022985:-76484 Msa1404050:five_prime_UTR
GTGGTTCTAGTTGGTTTGGT+AGG 0.447704 tig0022985:-73730 Msa1404050:three_prime_UTR
AAATAGTAACCAAGCTTACT+TGG 0.448187 tig0022985:-74495 Msa1404050:intron
TTTCTGAGAATCCTCAATAG+TGG 0.448253 tig0022985:+74835 None:intergenic
ATATATCTTCTGATGGCAAA+TGG 0.450984 tig0022985:-75344 Msa1404050:CDS
ATGCGAACCTTCCGAGAGAA+TGG 0.453096 tig0022985:-74132 Msa1404050:CDS
AGAATTGGACAGAACAAATT+GGG 0.460902 tig0022985:-73646 Msa1404050:three_prime_UTR
AAGCGCAGTGAGACCGTTTG+AGG 0.464728 tig0022985:+75006 None:intergenic
ATCGGAAGTAAGCTTGAGAA+TGG 0.464732 tig0022985:+74664 None:intergenic
CATGGAGTGGCCAGCATGTA+CGG 0.465567 tig0022985:-76302 Msa1404050:CDS
CGTGTGCTCTACTGCTACTC+TGG 0.478413 tig0022985:-75559 Msa1404050:CDS
TTCAAGCAATTTAGAAGTGA+AGG 0.478862 tig0022985:-73983 Msa1404050:CDS
CGGTCCAGAATTGGGCAGAA+AGG 0.486596 tig0022985:-74628 Msa1404050:CDS
CATAGATAGAAAGAAAGTAT+TGG 0.488138 tig0022985:-76453 Msa1404050:five_prime_UTR
AATTTGGTTATAGTTAATAG+TGG 0.489515 tig0022985:-73749 Msa1404050:three_prime_UTR
CTAACAGACTCTATGGTTGT+TGG 0.492579 tig0022985:+74018 None:intergenic
CAACAACCATAGAGTCTGTT+AGG 0.493077 tig0022985:-74017 Msa1404050:CDS
GTGAGAACTAATTCCTCAAA+CGG 0.503230 tig0022985:-75019 Msa1404050:CDS
TTCTATGTAACAGACGTGAC+TGG 0.504956 tig0022985:-74054 Msa1404050:CDS
TAGTTAATAGTGGTTCTAGT+TGG 0.509035 tig0022985:-73739 Msa1404050:three_prime_UTR
TAATAATTACCAAGTAAGCT+TGG 0.509666 tig0022985:+74486 None:intergenic
TCAATGTTTAAAAGCTTCTG+TGG 0.509902 tig0022985:-74312 Msa1404050:CDS
TAAAAGCTTCTGTGGAGAGA+AGG 0.512503 tig0022985:-74304 Msa1404050:CDS
GAGTCTGTTAGGCAGAAGAT+TGG 0.515644 tig0022985:-74006 Msa1404050:CDS
GTCTTCTGATGATAAATCAA+TGG 0.517572 tig0022985:+73955 None:intergenic
GAGAGAGAGGATCAAACAGT+TGG 0.521675 tig0022985:-73931 Msa1404050:CDS
TCATATTCATCCGTACATGC+TGG 0.524946 tig0022985:+76292 None:intergenic
AACAGGTTATTAGTGCAAGA+AGG 0.528541 tig0022985:-75431 Msa1404050:intron
TAACATTAAGCCCATTCTCT+CGG 0.533741 tig0022985:+74121 None:intergenic
TGCGAACCTTCCGAGAGAAT+GGG 0.534209 tig0022985:-74131 Msa1404050:CDS
CGATTCTGGATCCACTATTG+AGG 0.535668 tig0022985:-74846 Msa1404050:CDS
GTTATTAGTGCAAGAAGGAA+TGG 0.538576 tig0022985:-75426 Msa1404050:CDS
AAAAGCTTCTGTGGAGAGAA+GGG 0.546145 tig0022985:-74303 Msa1404050:CDS
CTGTTATGCATAGCGAAAGA+AGG 0.550135 tig0022985:-74730 Msa1404050:CDS
CTCTGGTTCTGAACTAATTG+GGG 0.551910 tig0022985:+74349 None:intergenic
ACATTGAAGATCAGCAAGTA+CGG 0.553801 tig0022985:+74937 None:intergenic
CTCTACTGCTACTCTGGTCA+AGG 0.554798 tig0022985:-75553 Msa1404050:intron
AATCAAACTATTATTTGATG+TGG 0.555718 tig0022985:-74570 Msa1404050:CDS
CGTTGTGAATGTTCAGTGCA+AGG 0.556887 tig0022985:-74597 Msa1404050:CDS
GAATTGGCGGTGCAGTGCTA+TGG 0.557823 tig0022985:-73909 Msa1404050:CDS
ATTAAGCCCATTCTCTCGGA+AGG 0.564565 tig0022985:+74125 None:intergenic
ATACAGAATTGGATTCTTGG+TGG 0.565015 tig0022985:-73691 Msa1404050:three_prime_UTR
CGACAGAAGACCAACTCTAT+CGG 0.565281 tig0022985:+74970 None:intergenic
AAGGCTTATATATCTTCTGA+TGG 0.568126 tig0022985:-75351 Msa1404050:CDS
TCGGAAGTAAGCTTGAGAAT+GGG 0.570198 tig0022985:+74665 None:intergenic
GATCAAACAGTTGGAATTGG+CGG 0.574407 tig0022985:-73922 Msa1404050:CDS
CTATTGGGAGCCTTGTGAGA+AGG 0.589228 tig0022985:-73885 Msa1404050:CDS
CAGAGTAGCAGTAGAGCACA+CGG 0.589491 tig0022985:+75560 None:intergenic
CGATAGAGTTGGTCTTCTGT+CGG 0.600658 tig0022985:-74969 Msa1404050:CDS
TCATCAGAAGACAGAGAGAG+AGG 0.602288 tig0022985:-73944 Msa1404050:CDS
TGTGGAGAGAAGGGCATCTG+AGG 0.606335 tig0022985:-74294 Msa1404050:intron
TTATCAGGAACCGATAGAGT+TGG 0.606433 tig0022985:-74980 Msa1404050:CDS
TTCCGATAACACTGTAGTGA+CGG 0.607402 tig0022985:-74648 Msa1404050:CDS
ATGTGATGTTGATGAAGCTA+AGG 0.612154 tig0022985:-74918 Msa1404050:CDS
TAGAGTTGGTCTTCTGTCGG+AGG 0.616833 tig0022985:-74966 Msa1404050:CDS
TATGCACAGAAGACAAGCAA+GGG 0.636043 tig0022985:-74170 Msa1404050:CDS
GTCCAGAATTGGGCAGAAAG+GGG 0.639703 tig0022985:-74626 Msa1404050:CDS
GTCTTTAACATAGATCAAAG+AGG 0.646875 tig0022985:+74871 None:intergenic
TTATGCACAGAAGACAAGCA+AGG 0.649693 tig0022985:-74171 Msa1404050:CDS
GATATCCACCATAGAAAACA+TGG 0.649833 tig0022985:-74088 Msa1404050:CDS
TAATAAGGATGAGCACACCC+AGG 0.655035 tig0022985:-76261 Msa1404050:intron
TCGCTGATCGTGACTACGAG+AGG 0.665248 tig0022985:-74691 Msa1404050:CDS
TATACAGATTCCTTCTCACA+AGG 0.668041 tig0022985:+73875 None:intergenic
GATGGCAAATGGTTCATGGA+TGG 0.678400 tig0022985:-75333 Msa1404050:intron
GCTAAGGTGTGGACTCACAA+CGG 0.682427 tig0022985:-74902 Msa1404050:CDS
GGTATGCAATTTGACAGACA+TGG 0.693118 tig0022985:-74549 Msa1404050:CDS
ATGTTGATGAAGCTAAGGTG+TGG 0.721366 tig0022985:-74913 Msa1404050:CDS
CTTGCACTGAACATTCACAA+CGG 0.736879 tig0022985:+74598 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAACTAAAGAAAATCT+AGG + tig0022985:74162-74181 None:intergenic 15.0%
!!! TCTTAATCTTTTAATTAAGA+AGG - tig0022985:74724-74743 Msa1404050:CDS 15.0%
!! TTTAGTTACATATTTACATT+TGG - tig0022985:74857-74876 Msa1404050:CDS 15.0%
!!! CATTTTAAAATATATAGAAC+AGG - tig0022985:74941-74960 Msa1404050:CDS 15.0%
!! ATCAATATTAACATTATATG+TGG + tig0022985:74999-75018 None:intergenic 15.0%
!!! TGATCTTTAATCTTAATTTT+CGG - tig0022985:75015-75034 Msa1404050:CDS 15.0%
!! TTCAAATCATTAATTATTTC+AGG - tig0022985:75695-75714 Msa1404050:intron 15.0%
!! AATATGAAAAGCTCTTAATA+AGG - tig0022985:73818-73837 Msa1404050:three_prime_UTR 20.0%
!! TCATTCAAAATATTTGATCA+AGG + tig0022985:73967-73986 None:intergenic 20.0%
!!! CTATTTTTATGTGTTGTTTT+TGG - tig0022985:74189-74208 Msa1404050:CDS 20.0%
!!! TTCATTTTAATATCTCCAAA+TGG - tig0022985:74301-74320 Msa1404050:CDS 20.0%
!!! ATTCTTTATGGAAAGAATTT+TGG + tig0022985:74578-74597 None:intergenic 20.0%
!!! TATGACAAATTGATTCTTTA+TGG + tig0022985:74590-74609 None:intergenic 20.0%
!!! TCTTTTTTGATCAAATTAAC+AGG - tig0022985:74646-74665 Msa1404050:CDS 20.0%
!! AATCAAACTATTATTTGATG+TGG - tig0022985:75524-75543 Msa1404050:intron 20.0%
!!! AATATTCTTTGCTTAGTTTT+TGG - tig0022985:76291-76310 Msa1404050:CDS 20.0%
!!! ATATTCTTTGCTTAGTTTTT+GGG - tig0022985:76292-76311 Msa1404050:CDS 20.0%
!!! ACATAAAAAGTTTAGAATGA+TGG - tig0022985:76322-76341 Msa1404050:exon 20.0%
!! AATTTGGTTATAGTTAATAG+TGG - tig0022985:76345-76364 Msa1404050:five_prime_UTR 20.0%
!! CATAGATAGAAAGAAAGTAT+TGG - tig0022985:73641-73660 Msa1404050:three_prime_UTR 25.0%
!! AACTTAGTTTGAGTTAGTTA+AGG - tig0022985:73679-73698 Msa1404050:three_prime_UTR 25.0%
!! ATCATGTAGTTTATACGTTT+TGG - tig0022985:73873-73892 Msa1404050:CDS 25.0%
! GATCAAGGAGTAAATAAAAT+TGG + tig0022985:73952-73971 None:intergenic 25.0%
! TGTTTCAACATATATGTTGT+AGG + tig0022985:73991-74010 None:intergenic 25.0%
! AACTAAAGAAAATCTAGGTT+GGG + tig0022985:74157-74176 None:intergenic 25.0%
! AAACTAAAGAAAATCTAGGT+TGG + tig0022985:74158-74177 None:intergenic 25.0%
!!! TTTATGGAAAGAATTTTGGT+AGG + tig0022985:74574-74593 None:intergenic 25.0%
! TAATAATTACCAAGTAAGCT+TGG + tig0022985:75611-75630 None:intergenic 25.0%
!! TTTTATATAAGACACAAGGA+TGG - tig0022985:75720-75739 Msa1404050:intron 25.0%
! TTTATTATGACCTTTGCTTA+AGG - tig0022985:75845-75864 Msa1404050:intron 25.0%
! ATTGTTAATCGTGTGATTAT+AGG - tig0022985:75886-75905 Msa1404050:intron 25.0%
! TTGTTAATCGTGTGATTATA+GGG - tig0022985:75887-75906 Msa1404050:intron 25.0%
!! AAGTTTAGAATGATGGAATT+TGG - tig0022985:76329-76348 Msa1404050:five_prime_UTR 25.0%
! AGATGAAAGTAATACAGAAT+TGG - tig0022985:76392-76411 Msa1404050:five_prime_UTR 25.0%
TGATACCACAAAGAAAAACA+TGG - tig0022985:73774-73793 Msa1404050:three_prime_UTR 30.0%
CAAGGAAAATTAACAAACCT+GGG + tig0022985:73853-73872 None:intergenic 30.0%
TCAAGGAAAATTAACAAACC+TGG + tig0022985:73854-73873 None:intergenic 30.0%
ACGTATAAACTACATGATCA+AGG + tig0022985:73871-73890 None:intergenic 30.0%
GGATTGATCTTAAATACTCT+AGG - tig0022985:73894-73913 Msa1404050:CDS 30.0%
GGATCGAATTAAGAATGAAA+TGG + tig0022985:74044-74063 None:intergenic 30.0%
TCATTCTTAATTCGATCCAT+CGG - tig0022985:74046-74065 Msa1404050:CDS 30.0%
GTAACTTAGATTCATTCAAG+GGG + tig0022985:74107-74126 None:intergenic 30.0%
GGTAACTTAGATTCATTCAA+GGG + tig0022985:74108-74127 None:intergenic 30.0%
AGGTAACTTAGATTCATTCA+AGG + tig0022985:74109-74128 None:intergenic 30.0%
TCAAAAAAAATTGTTCCTCG+AGG + tig0022985:74129-74148 None:intergenic 30.0%
TTGTTGAAATAAACTTCTGC+TGG + tig0022985:74226-74245 None:intergenic 30.0%
AAACTGAATTATTGCAACCA+AGG + tig0022985:74279-74298 None:intergenic 30.0%
TACACATTATTGATGCCATT+TGG + tig0022985:74319-74338 None:intergenic 30.0%
AGTGGACATATCAATTACAA+TGG + tig0022985:74354-74373 None:intergenic 30.0%
AAGGCTTATATATCTTCTGA+TGG - tig0022985:74743-74762 Msa1404050:CDS 30.0%
ATATATCTTCTGATGGCAAA+TGG - tig0022985:74750-74769 Msa1404050:CDS 30.0%
GTCATATCGAAAAGTTCAAA+AGG + tig0022985:74805-74824 None:intergenic 30.0%
GTCTTTAACATAGATCAAAG+AGG + tig0022985:75226-75245 None:intergenic 30.0%
!! CGTTTAAGAAACGTTTTGAA+GGG - tig0022985:75300-75319 Msa1404050:intron 30.0%
TTGGTTACTATTTGTGTTGA+TGG + tig0022985:75592-75611 None:intergenic 30.0%
AAATAGTAACCAAGCTTACT+TGG - tig0022985:75599-75618 Msa1404050:intron 30.0%
CAAACATATACTGAACTTCA+TGG + tig0022985:75643-75662 None:intergenic 30.0%
!! GGAGTTTTATATAAGACACA+AGG - tig0022985:75716-75735 Msa1404050:intron 30.0%
TCAATGTTTAAAAGCTTCTG+TGG - tig0022985:75782-75801 Msa1404050:intron 30.0%
! ATTTGTAGCCATGTTTTCTA+TGG + tig0022985:76017-76036 None:intergenic 30.0%
TTCAAGCAATTTAGAAGTGA+AGG - tig0022985:76111-76130 Msa1404050:intron 30.0%
GTCTTCTGATGATAAATCAA+TGG + tig0022985:76142-76161 None:intergenic 30.0%
AGAAGGAATCTGTATAGTTT+GGG - tig0022985:76226-76245 Msa1404050:intron 30.0%
!! TAGTTAATAGTGGTTCTAGT+TGG - tig0022985:76355-76374 Msa1404050:five_prime_UTR 30.0%
GTAATACAGAATTGGATTCT+TGG - tig0022985:76400-76419 Msa1404050:five_prime_UTR 30.0%
!! ACAACTTTTAGGTACAGAAT+TGG - tig0022985:76433-76452 Msa1404050:five_prime_UTR 30.0%
AGAATTGGACAGAACAAATT+GGG - tig0022985:76448-76467 Msa1404050:five_prime_UTR 30.0%
TAAGGTTGTTTGTGACGATT+TGG - tig0022985:73697-73716 Msa1404050:three_prime_UTR 35.0%
AATGAATCTAAGTTACCTCG+AGG - tig0022985:74111-74130 Msa1404050:CDS 35.0%
GAATGTTCTTTGTCTATGAC+CGG - tig0022985:74250-74269 Msa1404050:intron 35.0%
!! GGTCAAAAAGCATCAGAATT+GGG + tig0022985:74481-74500 None:intergenic 35.0%
!! AGGTCAAAAAGCATCAGAAT+TGG + tig0022985:74482-74501 None:intergenic 35.0%
TTGACCTTTGTGTATGAAAC+AGG - tig0022985:74495-74514 Msa1404050:intron 35.0%
TGACCTTTGTGTATGAAACA+GGG - tig0022985:74496-74515 Msa1404050:CDS 35.0%
AACAGGTTATTAGTGCAAGA+AGG - tig0022985:74663-74682 Msa1404050:CDS 35.0%
GTTATTAGTGCAAGAAGGAA+TGG - tig0022985:74668-74687 Msa1404050:CDS 35.0%
TTCCACATCACTCATCAAAA+TGG - tig0022985:74897-74916 Msa1404050:CDS 35.0%
!! TTCCATTTTGATGAGTGATG+TGG + tig0022985:74902-74921 None:intergenic 35.0%
GTGAGAACTAATTCCTCAAA+CGG - tig0022985:75075-75094 Msa1404050:intron 35.0%
ACATTGAAGATCAGCAAGTA+CGG + tig0022985:75160-75179 None:intergenic 35.0%
! ATGTGATGTTGATGAAGCTA+AGG - tig0022985:75176-75195 Msa1404050:CDS 35.0%
TATGTTAAAGACTGCGATTC+TGG - tig0022985:75234-75253 Msa1404050:intron 35.0%
! TTTCTGAGAATCCTCAATAG+TGG + tig0022985:75262-75281 None:intergenic 35.0%
! GCGTTTAAGAAACGTTTTGA+AGG - tig0022985:75299-75318 Msa1404050:intron 35.0%
CATATACTGAACTTCATGGA+AGG + tig0022985:75639-75658 None:intergenic 35.0%
CTTAACTACTCCTTAAGCAA+AGG + tig0022985:75858-75877 None:intergenic 35.0%
TAACATTAAGCCCATTCTCT+CGG + tig0022985:75976-75995 None:intergenic 35.0%
!!! GTTTTCTATGGTGGATATCT+CGG + tig0022985:76005-76024 None:intergenic 35.0%
GATATCCACCATAGAAAACA+TGG - tig0022985:76006-76025 Msa1404050:intron 35.0%
TATACAGATTCCTTCTCACA+AGG + tig0022985:76222-76241 None:intergenic 35.0%
GAGAAGGAATCTGTATAGTT+TGG - tig0022985:76225-76244 Msa1404050:intron 35.0%
!! AATAGTGGTTCTAGTTGGTT+TGG - tig0022985:76360-76379 Msa1404050:five_prime_UTR 35.0%
ATACAGAATTGGATTCTTGG+TGG - tig0022985:76403-76422 Msa1404050:five_prime_UTR 35.0%
CAGAATTGGACAGAACAAAT+TGG - tig0022985:76447-76466 Msa1404050:five_prime_UTR 35.0%
ATTGGGTTCATTGTTCATCT+AGG - tig0022985:76465-76484 Msa1404050:five_prime_UTR 35.0%
! TCATTGTTCATCTAGGACTT+TGG - tig0022985:76472-76491 Msa1404050:five_prime_UTR 35.0%
! CCACTCCATGTTTTTCTTTG+TGG + tig0022985:73782-73801 None:intergenic 40.0%
CCACAAAGAAAAACATGGAG+TGG - tig0022985:73779-73798 Msa1404050:three_prime_UTR 40.0%
TCATATTCATCCGTACATGC+TGG + tig0022985:73805-73824 None:intergenic 40.0%
TTCTTAATTCGATCCATCGG+TGG - tig0022985:74049-74068 Msa1404050:CDS 40.0%
ATTATTGCAACCAAGGCAAC+CGG + tig0022985:74272-74291 None:intergenic 40.0%
!! GGAACATAGACGTTCTAGAA+GGG + tig0022985:74460-74479 None:intergenic 40.0%
CAACCCTGTTTCATACACAA+AGG + tig0022985:74502-74521 None:intergenic 40.0%
TTCTGATGGCAAATGGTTCA+TGG - tig0022985:74757-74776 Msa1404050:CDS 40.0%
! TGTATTTTGCAACAGTCGCT+TGG - tig0022985:75039-75058 Msa1404050:CDS 40.0%
! GTATTTTGCAACAGTCGCTT+GGG - tig0022985:75040-75059 Msa1404050:CDS 40.0%
TTATCAGGAACCGATAGAGT+TGG - tig0022985:75114-75133 Msa1404050:intron 40.0%
! ATGTTGATGAAGCTAAGGTG+TGG - tig0022985:75181-75200 Msa1404050:CDS 40.0%
CTGTTATGCATAGCGAAAGA+AGG - tig0022985:75364-75383 Msa1404050:CDS 40.0%
TCGGAAGTAAGCTTGAGAAT+GGG + tig0022985:75432-75451 None:intergenic 40.0%
ATCGGAAGTAAGCTTGAGAA+TGG + tig0022985:75433-75452 None:intergenic 40.0%
TTCCGATAACACTGTAGTGA+CGG - tig0022985:75446-75465 Msa1404050:intron 40.0%
CTTGCACTGAACATTCACAA+CGG + tig0022985:75499-75518 None:intergenic 40.0%
GGTATGCAATTTGACAGACA+TGG - tig0022985:75545-75564 Msa1404050:intron 40.0%
!! CTCTGGTTCTGAACTAATTG+GGG + tig0022985:75748-75767 None:intergenic 40.0%
!! GCTCTGGTTCTGAACTAATT+GGG + tig0022985:75749-75768 None:intergenic 40.0%
TAAAAGCTTCTGTGGAGAGA+AGG - tig0022985:75790-75809 Msa1404050:intron 40.0%
AAAAGCTTCTGTGGAGAGAA+GGG - tig0022985:75791-75810 Msa1404050:intron 40.0%
TTATGCACAGAAGACAAGCA+AGG - tig0022985:75923-75942 Msa1404050:intron 40.0%
TATGCACAGAAGACAAGCAA+GGG - tig0022985:75924-75943 Msa1404050:intron 40.0%
! TGTAGCCATGTTTTCTATGG+TGG + tig0022985:76014-76033 None:intergenic 40.0%
TTCTATGTAACAGACGTGAC+TGG - tig0022985:76040-76059 Msa1404050:intron 40.0%
CTAACAGACTCTATGGTTGT+TGG + tig0022985:76079-76098 None:intergenic 40.0%
CAACAACCATAGAGTCTGTT+AGG - tig0022985:76077-76096 Msa1404050:intron 40.0%
GAGGATCAAACAGTTGGAAT+TGG - tig0022985:76169-76188 Msa1404050:intron 40.0%
GATCAAACAGTTGGAATTGG+CGG - tig0022985:76172-76191 Msa1404050:intron 40.0%
! GTGGCTGATAGACAACTTTT+AGG - tig0022985:76422-76441 Msa1404050:five_prime_UTR 40.0%
AACAAAGCGTGCTTTGTGTC+AGG - tig0022985:73610-73629 Msa1404050:three_prime_UTR 45.0%
TAATAAGGATGAGCACACCC+AGG - tig0022985:73833-73852 Msa1404050:exon 45.0%
ATTTCTACACACACCACCGA+TGG + tig0022985:74065-74084 None:intergenic 45.0%
! GGGAACATAGACGTTCTAGA+AGG + tig0022985:74461-74480 None:intergenic 45.0%
GATGGCAAATGGTTCATGGA+TGG - tig0022985:74761-74780 Msa1404050:CDS 45.0%
CTCACTGCGCTTGAATTATC+AGG - tig0022985:75099-75118 Msa1404050:intron 45.0%
CGACAGAAGACCAACTCTAT+CGG + tig0022985:75127-75146 None:intergenic 45.0%
!! CGATAGAGTTGGTCTTCTGT+CGG - tig0022985:75125-75144 Msa1404050:intron 45.0%
CGATTCTGGATCCACTATTG+AGG - tig0022985:75248-75267 Msa1404050:intron 45.0%
GACCGTCACTACAGTGTTAT+CGG + tig0022985:75451-75470 None:intergenic 45.0%
TGTAGTGACGGTCCAGAATT+GGG - tig0022985:75458-75477 Msa1404050:intron 45.0%
CGTTGTGAATGTTCAGTGCA+AGG - tig0022985:75497-75516 Msa1404050:intron 45.0%
!! CGCTCTGGTTCTGAACTAAT+TGG + tig0022985:75750-75769 None:intergenic 45.0%
ATTAAGCCCATTCTCTCGGA+AGG + tig0022985:75972-75991 None:intergenic 45.0%
TCTATGGTTGTTGGATCAGC+TGG + tig0022985:76070-76089 None:intergenic 45.0%
CTTCTGCCTAACAGACTCTA+TGG + tig0022985:76086-76105 None:intergenic 45.0%
GAGTCTGTTAGGCAGAAGAT+TGG - tig0022985:76088-76107 Msa1404050:intron 45.0%
TCATCAGAAGACAGAGAGAG+AGG - tig0022985:76150-76169 Msa1404050:intron 45.0%
GAGAGAGAGGATCAAACAGT+TGG - tig0022985:76163-76182 Msa1404050:intron 45.0%
GTGCAGTGCTATGGTCTATT+GGG - tig0022985:76194-76213 Msa1404050:intron 45.0%
!! GTGGTTCTAGTTGGTTTGGT+AGG - tig0022985:76364-76383 Msa1404050:five_prime_UTR 45.0%
!! AAATTATTAAAAAATTATAG+TGG + tig0022985:74372-74391 None:intergenic 5.0%
TTGTCTATGACCGGTTGCCT+TGG - tig0022985:74259-74278 Msa1404050:intron 50.0%
CAGAGTAGCAGTAGAGCACA+CGG + tig0022985:74537-74556 None:intergenic 50.0%
CTCTACTGCTACTCTGGTCA+AGG - tig0022985:74541-74560 Msa1404050:CDS 50.0%
!! TAGAGTTGGTCTTCTGTCGG+AGG - tig0022985:75128-75147 Msa1404050:intron 50.0%
GCTAAGGTGTGGACTCACAA+CGG - tig0022985:75192-75211 Msa1404050:CDS 50.0%
CTGTAGTGACGGTCCAGAAT+TGG - tig0022985:75457-75476 Msa1404050:intron 50.0%
GGTCCAGAATTGGGCAGAAA+GGG - tig0022985:75467-75486 Msa1404050:intron 50.0%
GTCCAGAATTGGGCAGAAAG+GGG - tig0022985:75468-75487 Msa1404050:intron 50.0%
AACCCCTTTCTGCCCAATTC+TGG + tig0022985:75473-75492 None:intergenic 50.0%
TGAATTACGCGTTGTCGCTC+TGG + tig0022985:75765-75784 None:intergenic 50.0%
ATGCGAACCTTCCGAGAGAA+TGG - tig0022985:75962-75981 Msa1404050:intron 50.0%
TGCGAACCTTCCGAGAGAAT+GGG - tig0022985:75963-75982 Msa1404050:intron 50.0%
GGTGCAGTGCTATGGTCTAT+TGG - tig0022985:76193-76212 Msa1404050:intron 50.0%
! CTATTGGGAGCCTTGTGAGA+AGG - tig0022985:76209-76228 Msa1404050:intron 50.0%
CATGGAGTGGCCAGCATGTA+CGG - tig0022985:73792-73811 Msa1404050:three_prime_UTR 55.0%
CGTGTGCTCTACTGCTACTC+TGG - tig0022985:74535-74554 Msa1404050:CDS 55.0%
AAGCGCAGTGAGACCGTTTG+AGG + tig0022985:75091-75110 None:intergenic 55.0%
TCGCTGATCGTGACTACGAG+AGG - tig0022985:75403-75422 Msa1404050:CDS 55.0%
CGGTCCAGAATTGGGCAGAA+AGG - tig0022985:75466-75485 Msa1404050:intron 55.0%
!! TGTGGAGAGAAGGGCATCTG+AGG - tig0022985:75800-75819 Msa1404050:intron 55.0%
GAATTGGCGGTGCAGTGCTA+TGG - tig0022985:76185-76204 Msa1404050:intron 55.0%
Chromosome Type Strat End Strand Name
tig0022985 gene 73597 76519 73597 ID=Msa1404050;Name=Msa1404050
tig0022985 mRNA 73597 76519 73597 ID=Msa1404050-mRNA-1;Parent=Msa1404050;Name=Msa1404050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=196|1|1|1|1|1|7|249|441
tig0022985 exon 73597 74208 73597 ID=Msa1404050-mRNA-1:exon:19568;Parent=Msa1404050-mRNA-1
tig0022985 exon 74295 74399 74295 ID=Msa1404050-mRNA-1:exon:19567;Parent=Msa1404050-mRNA-1
tig0022985 exon 74496 75062 74496 ID=Msa1404050-mRNA-1:exon:19566;Parent=Msa1404050-mRNA-1
tig0022985 exon 75154 75221 75154 ID=Msa1404050-mRNA-1:exon:19565;Parent=Msa1404050-mRNA-1
tig0022985 exon 75334 75448 75334 ID=Msa1404050-mRNA-1:exon:19564;Parent=Msa1404050-mRNA-1
tig0022985 exon 75554 75599 75554 ID=Msa1404050-mRNA-1:exon:19563;Parent=Msa1404050-mRNA-1
tig0022985 exon 76262 76519 76262 ID=Msa1404050-mRNA-1:exon:19562;Parent=Msa1404050-mRNA-1
tig0022985 five_prime_UTR 76324 76519 76324 ID=Msa1404050-mRNA-1:five_prime_utr;Parent=Msa1404050-mRNA-1
tig0022985 CDS 76262 76323 76262 ID=Msa1404050-mRNA-1:cds;Parent=Msa1404050-mRNA-1
tig0022985 CDS 75554 75599 75554 ID=Msa1404050-mRNA-1:cds;Parent=Msa1404050-mRNA-1
tig0022985 CDS 75334 75448 75334 ID=Msa1404050-mRNA-1:cds;Parent=Msa1404050-mRNA-1
tig0022985 CDS 75154 75221 75154 ID=Msa1404050-mRNA-1:cds;Parent=Msa1404050-mRNA-1
tig0022985 CDS 74496 75062 74496 ID=Msa1404050-mRNA-1:cds;Parent=Msa1404050-mRNA-1
tig0022985 CDS 74295 74399 74295 ID=Msa1404050-mRNA-1:cds;Parent=Msa1404050-mRNA-1
tig0022985 CDS 73846 74208 73846 ID=Msa1404050-mRNA-1:cds;Parent=Msa1404050-mRNA-1
tig0022985 three_prime_UTR 73597 73845 73597 ID=Msa1404050-mRNA-1:three_prime_utr;Parent=Msa1404050-mRNA-1
Gene Sequence

>Msa1404050

ATGGAGTGGCCAGCATGTACGGATGAATATGAAAAGCTCTTAATAAGGATGAGCACACCCAGGGTTGTGATTGACAATGCCGTGTGCTCTACTGCTACTCTGGTCAAGGTTATTAGTGCAAGAAGGAATGGTAGTTTACTTAATGCAATACAAGTACTCATTGATCTTAATCTTTTAATTAAGAAGGCTTATATATCTTCTGATGGCAAATGGTTCATGGATGTTTTCCACATCACTCATCAAAATGGAAGCAAGATAATCGACGAGAACATTTTAAAATATATAGAACAGTCGCTTGGGAGCATTCATAACGTGAGAACTAATTCCTCAAACGGTCTCACTGCGCTTGAATTATCAGGAACCGATAGAGTTGGTCTTCTGTCGGAGGTGTTTGCCGTACTTGCTGATCTTCAATGTGATGTTGATGAAGCTAAGGTGTGGACTCACAACGGTCGCATTGCCTCTTTGATCTATGTTAAAGACTGCGATTCTGGATCCACTATTGAGGATTCTCAGAAAATTAAAAAGATTGAAGTGCGTTTAAGAAACGTTTTGAAGGGAGACAATGACATTAGAAGTGCAAAGACTTCTGTTTCTATGTCTGTTATGCATAGCGAAAGAAGGCTGCATCAAATGATGTTCGCTGATCGTGACTACGAGAGGACTCCCATTCTCAAGCTTACTTCCGATAACACTGTAGTGACGGTCCAGAATTGGGCAGAAAGGGGTTATTCCGTTGTGAATGTTCAGTGCAAGGATCGAATCAAACTATTATTTGATGTGGTATGCAATTTGACAGACATGGAGTATGTTGTGTTTCATGCGACCATCAACACAAATAGTAACCAAGCTTACTTGGAGTTTTATATAAGACACAAGGATGGCACCCCAATTAGTTCAGAACCAGAGCGACAACGCGTAATTCAATGTTTAAAAGCTTCTGTGGAGAGAAGGGCATCTGAGGGTGTTCAACTAAAGTTATGCACAGAAGACAAGCAAGGGCTTCTAGCAGAAGTGATGCGAACCTTCCGAGAGAATGGGCTTAATGTTACAAGAGCCGAGATATCCACCATAGAAAACATGGCTACAAATGTTTTCTATGTAACAGACGTGACTGGAAAACCAGCTGATCCAACAACCATAGAGTCTGTTAGGCAGAAGATTGGTTCAAGCAATTTAGAAGTGAAGGAGTTACCATTGATTTATCATCAGAAGACAGAGAGAGAGGATCAAACAGTTGGAATTGGCGGTGCAGTGCTATGGTCTATTGGGAGCCTTGTGAGAAGGAATCTGTATAGTTTGGGATTAATTAAATCATGTTCTTAA

Protein sequence

>Msa1404050

MEWPACTDEYEKLLIRMSTPRVVIDNAVCSTATLVKVISARRNGSLLNAIQVLIDLNLLIKKAYISSDGKWFMDVFHITHQNGSKIIDENILKYIEQSLGSIHNVRTNSSNGLTALELSGTDRVGLLSEVFAVLADLQCDVDEAKVWTHNGRIASLIYVKDCDSGSTIEDSQKIKKIEVRLRNVLKGDNDIRSAKTSVSMSVMHSERRLHQMMFADRDYERTPILKLTSDNTVVTVQNWAERGYSVVNVQCKDRIKLLFDVVCNLTDMEYVVFHATINTNSNQAYLEFYIRHKDGTPISSEPERQRVIQCLKASVERRASEGVQLKLCTEDKQGLLAEVMRTFRENGLNVTRAEISTIENMATNVFYVTDVTGKPADPTTIESVRQKIGSSNLEVKELPLIYHQKTEREDQTVGIGGAVLWSIGSLVRRNLYSLGLIKSCS*