Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0619310 | XP_003630093.1 | 98.045 | 358 | 7 | 0 | 1 | 358 | 1 | 358 | 0.0 | 735 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0619310 | sp|Q39237|TGA1_ARATH | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 5.51e-155 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0619310 | G7LB89 | 98.045 | 358 | 7 | 0 | 1 | 358 | 1 | 358 | 0.0 | 735 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0619310 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025510 | Msa0619310 | 0.809063 | 2.276462e-50 | -8.615850e-47 |
| Msa0043740 | Msa0619310 | 0.837281 | 5.703253e-57 | -8.615850e-47 |
| Msa0051960 | Msa0619310 | 0.841135 | 5.710429e-58 | -8.615850e-47 |
| Msa0090090 | Msa0619310 | 0.838834 | 2.271671e-57 | -8.615850e-47 |
| Msa0101960 | Msa0619310 | 0.836819 | 7.484216e-57 | -8.615850e-47 |
| Msa0619310 | Msa0631130 | 0.806258 | 8.976852e-50 | -8.615850e-47 |
| Msa0619310 | Msa0635270 | 0.800519 | 1.387328e-48 | -8.615850e-47 |
| Msa0619310 | Msa0669350 | 0.802033 | 6.796416e-49 | -8.615850e-47 |
| Msa0619310 | Msa0704680 | 0.911576 | 5.202736e-83 | -8.615850e-47 |
| Msa0619310 | Msa0740630 | 0.800497 | 1.401707e-48 | -8.615850e-47 |
| Msa0619310 | Msa0744640 | 0.807476 | 4.960560e-50 | -8.615850e-47 |
| Msa0619310 | Msa0790920 | 0.803368 | 3.604079e-49 | -8.615850e-47 |
| Msa0619310 | Msa0820880 | 0.801913 | 7.195548e-49 | -8.615850e-47 |
| Msa0619310 | Msa0841730 | 0.806995 | 6.274132e-50 | -8.615850e-47 |
| Msa0619310 | Msa0859040 | 0.819484 | 1.133418e-52 | -8.615850e-47 |
| Msa0619310 | Msa0870510 | 0.808899 | 2.468820e-50 | -8.615850e-47 |
| Msa0619310 | Msa0881720 | 0.800175 | 1.629943e-48 | -8.615850e-47 |
| Msa0619310 | Msa0905570 | 0.808760 | 2.643855e-50 | -8.615850e-47 |
| Msa0619310 | Msa1030210 | 0.801071 | 1.070494e-48 | -8.615850e-47 |
| Msa0619310 | Msa1034450 | 0.804431 | 2.167094e-49 | -8.615850e-47 |
| Msa0619310 | Msa1074200 | 0.809062 | 2.278273e-50 | -8.615850e-47 |
| Msa0619310 | Msa1084890 | 0.800712 | 1.267085e-48 | -8.615850e-47 |
| Msa0619310 | Msa1114670 | 0.825291 | 5.078124e-54 | -8.615850e-47 |
| Msa0619310 | Msa1120580 | 0.803521 | 3.351277e-49 | -8.615850e-47 |
| Msa0619310 | Msa1136760 | 0.802547 | 5.328281e-49 | -8.615850e-47 |
| Msa0619310 | Msa1157110 | 0.825238 | 5.228153e-54 | -8.615850e-47 |
| Msa0619310 | Msa1159170 | 0.849442 | 3.225850e-60 | -8.615850e-47 |
| Msa0619310 | Msa1187490 | 0.812415 | 4.288225e-51 | -8.615850e-47 |
| Msa0619310 | Msa1225580 | 0.803676 | 3.112169e-49 | -8.615850e-47 |
| Msa0619310 | Msa1256060 | 0.816298 | 5.944861e-52 | -8.615850e-47 |
| Msa0619310 | Msa1306830 | 0.825996 | 3.456907e-54 | -8.615850e-47 |
| Msa0619310 | Msa1355510 | 0.810035 | 1.408244e-50 | -8.615850e-47 |
| Msa0619310 | Msa1362850 | 0.811323 | 7.416608e-51 | -8.615850e-47 |
| Msa0619310 | Msa1405530 | 0.804168 | 2.458796e-49 | -8.615850e-47 |
| Msa0619310 | Msa1447870 | 0.802502 | 5.441586e-49 | -8.615850e-47 |
| Msa0137560 | Msa0619310 | 0.838974 | 2.090074e-57 | -8.615850e-47 |
| Msa0139680 | Msa0619310 | 0.800191 | 1.618394e-48 | -8.615850e-47 |
| Msa0170770 | Msa0619310 | 0.804070 | 2.577311e-49 | -8.615850e-47 |
| Msa0182560 | Msa0619310 | 0.821011 | 5.065948e-53 | -8.615850e-47 |
| Msa0185100 | Msa0619310 | 0.804055 | 2.595306e-49 | -8.615850e-47 |
| Msa0193190 | Msa0619310 | 0.820460 | 6.778021e-53 | -8.615850e-47 |
| Msa0203090 | Msa0619310 | 0.806919 | 6.509001e-50 | -8.615850e-47 |
| Msa0441260 | Msa0619310 | 0.803898 | 2.798631e-49 | -8.615850e-47 |
| Msa0264680 | Msa0619310 | 0.809196 | 2.132319e-50 | -8.615850e-47 |
| Msa0273070 | Msa0619310 | 0.807530 | 4.831439e-50 | -8.615850e-47 |
| Msa0285890 | Msa0619310 | 0.804363 | 2.239658e-49 | -8.615850e-47 |
| Msa0296900 | Msa0619310 | 0.804964 | 1.677937e-49 | -8.615850e-47 |
| Msa0302730 | Msa0619310 | 0.801539 | 8.585894e-49 | -8.615850e-47 |
| Msa0307420 | Msa0619310 | 0.914636 | 1.518706e-84 | -8.615850e-47 |
| Msa0335080 | Msa0619310 | 0.812740 | 3.641208e-51 | -8.615850e-47 |
| Msa0355550 | Msa0619310 | 0.817599 | 3.032715e-52 | -8.615850e-47 |
| Msa0488580 | Msa0619310 | 0.806993 | 6.281160e-50 | -8.615850e-47 |
| Msa0490320 | Msa0619310 | 0.830015 | 3.724878e-55 | -8.615850e-47 |
| Msa0534270 | Msa0619310 | 0.800953 | 1.131431e-48 | -8.615850e-47 |
| Msa0534610 | Msa0619310 | 0.801062 | 1.074696e-48 | -8.615850e-47 |
| Msa0563860 | Msa0619310 | 0.806899 | 6.574685e-50 | -8.615850e-47 |
| Msa0567370 | Msa0619310 | 0.800489 | 1.407079e-48 | -8.615850e-47 |
| Msa0577490 | Msa0619310 | 0.827746 | 1.319374e-54 | -8.615850e-47 |
| Msa0590810 | Msa0619310 | 0.808218 | 3.451012e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0619310 | MtrunA17_Chr8g0382861 | 98.045 | 358 | 7 | 0 | 1 | 358 | 1 | 358 | 0.0 | 735 |
| Msa0619310 | MtrunA17_Chr3g0124601 | 68.785 | 362 | 105 | 4 | 4 | 358 | 3 | 363 | 0.0 | 509 |
| Msa0619310 | MtrunA17_Chr3g0115371 | 45.821 | 347 | 181 | 3 | 15 | 354 | 1 | 347 | 5.36e-102 | 305 |
| Msa0619310 | MtrunA17_Chr5g0424861 | 47.839 | 347 | 173 | 5 | 15 | 353 | 1 | 347 | 1.35e-98 | 296 |
| Msa0619310 | MtrunA17_Chr8g0353501 | 52.234 | 291 | 125 | 4 | 75 | 356 | 181 | 466 | 4.08e-94 | 288 |
| Msa0619310 | MtrunA17_Chr7g0256211 | 51.546 | 291 | 127 | 4 | 75 | 356 | 167 | 452 | 4.14e-93 | 285 |
| Msa0619310 | MtrunA17_Chr2g0321431 | 50.526 | 285 | 129 | 4 | 75 | 356 | 194 | 469 | 2.38e-90 | 280 |
| Msa0619310 | MtrunA17_Chr7g0258321 | 45.425 | 306 | 159 | 3 | 59 | 356 | 158 | 463 | 1.07e-87 | 271 |
| Msa0619310 | MtrunA17_Chr5g0422771 | 48.797 | 291 | 137 | 3 | 74 | 356 | 178 | 464 | 1.65e-86 | 268 |
| Msa0619310 | MtrunA17_Chr1g0174701 | 41.333 | 375 | 185 | 8 | 3 | 356 | 146 | 506 | 2.63e-86 | 269 |
| Msa0619310 | MtrunA17_Chr4g0026401 | 47.735 | 287 | 139 | 3 | 71 | 356 | 185 | 461 | 8.94e-85 | 265 |
| Msa0619310 | MtrunA17_Chr1g0210151 | 44.828 | 290 | 151 | 4 | 74 | 356 | 53 | 340 | 4.99e-81 | 251 |
| Msa0619310 | MtrunA17_Chr5g0424851 | 50.450 | 222 | 109 | 1 | 133 | 353 | 1 | 222 | 4.09e-67 | 218 |
| Msa0619310 | MtrunA17_Chr5g0424851 | 47.573 | 206 | 108 | 0 | 141 | 346 | 223 | 428 | 2.99e-59 | 197 |
| Msa0619310 | MtrunA17_Chr3g0093451 | 45.342 | 161 | 80 | 4 | 78 | 230 | 49 | 209 | 6.59e-40 | 140 |
| Msa0619310 | MtrunA17_Chr1g0196951 | 33.796 | 216 | 117 | 6 | 129 | 338 | 34 | 229 | 6.86e-30 | 114 |
| Msa0619310 | MtrunA17_Chr8g0384821 | 25.806 | 248 | 149 | 5 | 133 | 345 | 2 | 249 | 1.24e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0619310 | AT5G65210.5 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 5.60e-156 | 442 |
| Msa0619310 | AT5G65210.7 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 5.60e-156 | 442 |
| Msa0619310 | AT5G65210.3 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 5.60e-156 | 442 |
| Msa0619310 | AT5G65210.1 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 5.60e-156 | 442 |
| Msa0619310 | AT5G65210.2 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 5.60e-156 | 442 |
| Msa0619310 | AT5G65210.4 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 5.60e-156 | 442 |
| Msa0619310 | AT5G10030.5 | 60.989 | 364 | 129 | 5 | 4 | 357 | 3 | 363 | 4.73e-155 | 440 |
| Msa0619310 | AT5G10030.3 | 60.989 | 364 | 129 | 5 | 4 | 357 | 3 | 363 | 4.73e-155 | 440 |
| Msa0619310 | AT5G10030.1 | 60.989 | 364 | 129 | 5 | 4 | 357 | 3 | 363 | 4.73e-155 | 440 |
| Msa0619310 | AT5G10030.4 | 60.989 | 364 | 129 | 5 | 4 | 357 | 3 | 363 | 4.73e-155 | 440 |
| Msa0619310 | AT5G10030.2 | 60.989 | 364 | 129 | 5 | 4 | 357 | 3 | 363 | 4.73e-155 | 440 |
| Msa0619310 | AT5G65210.6 | 65.646 | 294 | 98 | 2 | 67 | 357 | 4 | 297 | 7.37e-139 | 397 |
| Msa0619310 | AT1G77920.1 | 49.867 | 375 | 161 | 5 | 1 | 357 | 2 | 367 | 6.40e-124 | 361 |
| Msa0619310 | AT1G22070.1 | 51.093 | 366 | 157 | 5 | 13 | 356 | 17 | 382 | 3.52e-122 | 357 |
| Msa0619310 | AT5G06950.2 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 6.72e-93 | 281 |
| Msa0619310 | AT5G06950.4 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 6.72e-93 | 281 |
| Msa0619310 | AT5G06950.1 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 6.72e-93 | 281 |
| Msa0619310 | AT5G06950.5 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 6.72e-93 | 281 |
| Msa0619310 | AT5G06950.3 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 6.72e-93 | 281 |
| Msa0619310 | AT1G08320.2 | 50.704 | 284 | 130 | 4 | 75 | 356 | 54 | 329 | 9.47e-93 | 281 |
| Msa0619310 | AT1G08320.5 | 50.704 | 284 | 130 | 4 | 75 | 356 | 54 | 329 | 9.47e-93 | 281 |
| Msa0619310 | AT1G08320.1 | 50.704 | 284 | 130 | 4 | 75 | 356 | 178 | 453 | 2.15e-91 | 282 |
| Msa0619310 | AT1G08320.4 | 50.704 | 284 | 130 | 4 | 75 | 356 | 178 | 453 | 2.15e-91 | 282 |
| Msa0619310 | AT1G08320.3 | 50.704 | 284 | 130 | 4 | 75 | 356 | 178 | 453 | 2.15e-91 | 282 |
| Msa0619310 | AT3G12250.5 | 51.186 | 295 | 131 | 4 | 70 | 356 | 14 | 303 | 5.53e-91 | 275 |
| Msa0619310 | AT3G12250.6 | 51.186 | 295 | 131 | 4 | 70 | 356 | 41 | 330 | 9.17e-91 | 275 |
| Msa0619310 | AT3G12250.2 | 51.186 | 295 | 131 | 4 | 70 | 356 | 41 | 330 | 9.17e-91 | 275 |
| Msa0619310 | AT3G12250.7 | 51.186 | 295 | 131 | 4 | 70 | 356 | 41 | 330 | 9.17e-91 | 275 |
| Msa0619310 | AT3G12250.1 | 51.186 | 295 | 131 | 4 | 70 | 356 | 41 | 330 | 9.17e-91 | 275 |
| Msa0619310 | AT3G12250.3 | 51.186 | 295 | 131 | 4 | 70 | 356 | 35 | 324 | 2.17e-90 | 274 |
| Msa0619310 | AT3G12250.4 | 48.589 | 319 | 143 | 5 | 54 | 356 | 42 | 355 | 4.15e-90 | 275 |
| Msa0619310 | AT5G06960.3 | 50.865 | 289 | 131 | 3 | 75 | 356 | 26 | 310 | 2.03e-89 | 271 |
| Msa0619310 | AT5G06960.2 | 50.865 | 289 | 131 | 3 | 75 | 356 | 46 | 330 | 2.45e-89 | 272 |
| Msa0619310 | AT5G06960.1 | 50.865 | 289 | 131 | 3 | 75 | 356 | 46 | 330 | 2.45e-89 | 272 |
| Msa0619310 | AT5G06839.1 | 40.541 | 370 | 194 | 6 | 3 | 356 | 56 | 415 | 1.63e-85 | 265 |
| Msa0619310 | AT5G06839.3 | 43.567 | 342 | 167 | 5 | 41 | 356 | 117 | 458 | 2.02e-85 | 266 |
| Msa0619310 | AT5G06839.2 | 39.623 | 371 | 197 | 5 | 3 | 356 | 56 | 416 | 9.87e-84 | 260 |
| Msa0619310 | AT1G68640.1 | 43.182 | 308 | 166 | 3 | 56 | 356 | 147 | 452 | 9.76e-75 | 238 |
| Msa0619310 | AT1G58330.1 | 26.906 | 223 | 146 | 6 | 139 | 346 | 3 | 223 | 3.14e-14 | 71.6 |
Find 98 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATCAGTGATATACAAAT+TGG | 0.178312 | 4_2:-70404751 | Msa0619310:CDS |
| CATAATCACCTATTCATAAA+TGG | 0.187077 | 4_2:+70403693 | None:intergenic |
| TGATTATTTAACTTCATTTC+AGG | 0.206692 | 4_2:+70406828 | None:intergenic |
| GGATTGGATTCTAATAATTT+AGG | 0.214016 | 4_2:-70405737 | Msa0619310:CDS |
| TAAGAGTCGTTTGAAGAAAA+AGG | 0.214551 | 4_2:-70406032 | Msa0619310:intron |
| TAGCTCCATGATCATGATTA+TGG | 0.229163 | 4_2:-70403808 | Msa0619310:three_prime_UTR |
| TCTGTCAATGGTTCAATTAA+AGG | 0.231131 | 4_2:+70404458 | None:intergenic |
| CCATACACCAATTTACTATA+TGG | 0.242264 | 4_2:-70406893 | Msa0619310:CDS |
| GAAGAGATTGAATTGGTTAA+TGG | 0.243682 | 4_2:-70407398 | Msa0619310:five_prime_UTR |
| ACATAACAGCTTTGAACTAT+TGG | 0.245284 | 4_2:-70407187 | Msa0619310:five_prime_UTR |
| AATGGTTTGCGTTGAGAATT+TGG | 0.249237 | 4_2:-70407380 | Msa0619310:five_prime_UTR |
| TGCTCGATGGCTGCTTGCTT+TGG | 0.257053 | 4_2:-70403936 | Msa0619310:CDS |
| GTTCTTCCCATATAGTAAAT+TGG | 0.257991 | 4_2:+70406886 | None:intergenic |
| CATTTATGAATAGGTGATTA+TGG | 0.271786 | 4_2:-70403692 | Msa0619310:three_prime_UTR |
| TAGTAACTGTGTTAGCTTCT+TGG | 0.278886 | 4_2:+70406644 | None:intergenic |
| ATTCCAACATTTGTCTGTTT+AGG | 0.286691 | 4_2:+70404794 | None:intergenic |
| TAGTCAGAGGATGCTTCTTT+TGG | 0.297753 | 4_2:-70406697 | Msa0619310:CDS |
| CAAATTGGGGAACTTGTAAA+TGG | 0.313309 | 4_2:-70404736 | Msa0619310:CDS |
| ATGTCCAGGGTCTCGGTTGC+TGG | 0.320409 | 4_2:-70403752 | Msa0619310:three_prime_UTR |
| TTTGTTTCCTCAAGAAATAT+TGG | 0.341373 | 4_2:-70406927 | Msa0619310:CDS |
| TTTGCTGGCTCTGTAAATTC+AGG | 0.350309 | 4_2:-70405713 | Msa0619310:intron |
| GCTGAAGAATAAACTTGTTT+CGG | 0.353601 | 4_2:+70403583 | None:intergenic |
| GCATGACTTCTCAAGATTAT+AGG | 0.355362 | 4_2:+70404418 | None:intergenic |
| AAATTGCAGGGATTGTATAT+TGG | 0.363352 | 4_2:-70405764 | Msa0619310:intron |
| AGCTAACACAGTTACTAATA+AGG | 0.363384 | 4_2:-70406638 | Msa0619310:intron |
| GTGTCGTTTAAAGCTGTTAC+AGG | 0.364560 | 4_2:-70405911 | Msa0619310:CDS |
| GCTCGATGGCTGCTTGCTTT+GGG | 0.374474 | 4_2:-70403935 | Msa0619310:CDS |
| GATTACCTCTTTCTCGTACT+TGG | 0.376739 | 4_2:+70407223 | None:intergenic |
| TGTTCTATAGACAAACTAAT+TGG | 0.379987 | 4_2:+70406973 | None:intergenic |
| CCATATAGTAAATTGGTGTA+TGG | 0.382687 | 4_2:+70406893 | None:intergenic |
| TGAAATGAAGTTAAATAATC+AGG | 0.391737 | 4_2:-70406826 | Msa0619310:intron |
| ATAACTCCCCATTTATGAAT+AGG | 0.399336 | 4_2:-70403701 | Msa0619310:three_prime_UTR |
| GCATGATTGGAGCTGGCAAT+TGG | 0.404097 | 4_2:-70407420 | None:intergenic |
| ATTGTATATTGGTGGTGGAT+TGG | 0.406379 | 4_2:-70405753 | Msa0619310:CDS |
| ATAATCACCTATTCATAAAT+GGG | 0.406860 | 4_2:+70403694 | None:intergenic |
| AATAGAGAGGCTGGAAGCTC+TGG | 0.410741 | 4_2:-70404279 | Msa0619310:CDS |
| AGGTGTTACCTTTAGAAGTT+CGG | 0.411150 | 4_2:+70404579 | None:intergenic |
| ATATCAGTGATATACAAATT+GGG | 0.413722 | 4_2:-70404750 | Msa0619310:CDS |
| CTGTCAATGGTTCAATTAAA+GGG | 0.420015 | 4_2:+70404459 | None:intergenic |
| AACGTTAACACTTGATAAGC+TGG | 0.424854 | 4_2:+70403784 | None:intergenic |
| TCGACCCTCCGAACTTCTAA+AGG | 0.428847 | 4_2:-70404587 | Msa0619310:intron |
| GCAATTGGAAGAGATTGAAT+TGG | 0.439614 | 4_2:-70407405 | Msa0619310:five_prime_UTR |
| AACCGTTGTTCCTCTGTCAA+TGG | 0.441867 | 4_2:+70404446 | None:intergenic |
| TAAGGGATTTGAGCAAACTT+TGG | 0.444298 | 4_2:-70403895 | Msa0619310:CDS |
| TGTTGTGCTCTTTCTATGAT+CGG | 0.445506 | 4_2:-70407149 | Msa0619310:intron |
| GTGAATACTTTCAACGCCTA+AGG | 0.464354 | 4_2:-70403913 | Msa0619310:CDS |
| CATACACCAATTTACTATAT+GGG | 0.478931 | 4_2:-70406892 | Msa0619310:CDS |
| AGATGCCCTTTCACAAGGTA+TGG | 0.480625 | 4_2:-70404384 | Msa0619310:CDS |
| AGAGCTAGATCATACAAAAC+AGG | 0.481991 | 4_2:-70405881 | Msa0619310:intron |
| GGATATTGCAATAGAGAGGC+TGG | 0.484290 | 4_2:-70404288 | Msa0619310:CDS |
| AAAGGGCATCTTCTGCTTGT+CGG | 0.484492 | 4_2:+70404396 | None:intergenic |
| TAACTGTGTTAGCTTCTTGG+TGG | 0.484546 | 4_2:+70406647 | None:intergenic |
| TCTGGCTAGCTTTGTGAACC+AGG | 0.487895 | 4_2:-70404261 | Msa0619310:intron |
| CAGGGATTGTATATTGGTGG+TGG | 0.489623 | 4_2:-70405758 | Msa0619310:CDS |
| AAGAACCAAGTACGAGAAAG+AGG | 0.504303 | 4_2:-70407228 | Msa0619310:five_prime_UTR |
| CTGGGCCATAATCATGATCA+TGG | 0.510413 | 4_2:+70403803 | None:intergenic |
| CTTGTTGACACAGTTGCAGC+AGG | 0.514923 | 4_2:-70404344 | Msa0619310:CDS |
| CATATAGTAAATTGGTGTAT+GGG | 0.519743 | 4_2:+70406894 | None:intergenic |
| AAAGTTTGCTCAAATCCCTT+AGG | 0.521782 | 4_2:+70403897 | None:intergenic |
| AGACCTAAACAGACAAATGT+TGG | 0.522384 | 4_2:-70404797 | Msa0619310:CDS |
| TGCAGGTTCACGAGGACGAT+TGG | 0.528063 | 4_2:+70403871 | None:intergenic |
| TGGTTCTTCCTCGATTTACT+CGG | 0.543111 | 4_2:+70407243 | None:intergenic |
| TGAATACTTTCAACGCCTAA+GGG | 0.549102 | 4_2:-70403912 | Msa0619310:CDS |
| ATGTGGAAAACAACAGCTGA+AGG | 0.550259 | 4_2:-70404634 | Msa0619310:CDS |
| ACAAATTGAGAAGATGATGA+AGG | 0.553463 | 4_2:+70406945 | None:intergenic |
| AGACAAATGTTGGAATTGAA+AGG | 0.555362 | 4_2:-70404787 | Msa0619310:CDS |
| TTTGCCAGCAACCGAGACCC+TGG | 0.555908 | 4_2:+70403748 | None:intergenic |
| ACAGGCTGATCATCTTCGAC+AGG | 0.558370 | 4_2:-70404002 | Msa0619310:intron |
| GAAGAACATTTCAAGAGTAA+TGG | 0.562707 | 4_2:-70406870 | Msa0619310:CDS |
| CTCTTGCATGAAGACTATGC+AGG | 0.569640 | 4_2:+70403854 | None:intergenic |
| CCGTACGTCAAACTGCTCGA+TGG | 0.578154 | 4_2:-70403949 | Msa0619310:CDS |
| TATCAGTGATATACAAATTG+GGG | 0.581840 | 4_2:-70404749 | Msa0619310:CDS |
| ATATACACCAATATTTCTTG+AGG | 0.587022 | 4_2:+70406920 | None:intergenic |
| AGGAACTTACATTCCACAGA+TGG | 0.589738 | 4_2:-70404309 | Msa0619310:CDS |
| TTGCAGGGATTGTATATTGG+TGG | 0.592067 | 4_2:-70405761 | Msa0619310:intron |
| TAAGATGGAGTATGAACACT+GGG | 0.600728 | 4_2:-70404824 | Msa0619310:CDS |
| ACGTTAACACTTGATAAGCT+GGG | 0.601137 | 4_2:+70403785 | None:intergenic |
| TGTTACCTTTAGAAGTTCGG+AGG | 0.601165 | 4_2:+70404582 | None:intergenic |
| TTAAGATGGAGTATGAACAC+TGG | 0.603260 | 4_2:-70404825 | Msa0619310:CDS |
| ATTAGTTTGTCTATAGAACA+TGG | 0.607742 | 4_2:-70406970 | Msa0619310:exon |
| AACCATTGACAGAGGAACAA+CGG | 0.614266 | 4_2:-70404448 | Msa0619310:CDS |
| AGCAACCGAGACCCTGGACA+TGG | 0.617265 | 4_2:+70403754 | None:intergenic |
| GCAGAAGATGCCCTTTCACA+AGG | 0.620831 | 4_2:-70404389 | Msa0619310:CDS |
| TTTAATTGAACCATTGACAG+AGG | 0.625048 | 4_2:-70404456 | Msa0619310:CDS |
| TCTATGTTATCACTGGCATG+TGG | 0.630097 | 4_2:-70404651 | Msa0619310:CDS |
| CCATCGAGCAGTTTGACGTA+CGG | 0.630335 | 4_2:+70403949 | None:intergenic |
| TCTATTGCAATATCCATCTG+TGG | 0.636700 | 4_2:+70404296 | None:intergenic |
| TTTATCTTCCGAGTAAATCG+AGG | 0.639567 | 4_2:-70407251 | Msa0619310:five_prime_UTR |
| GTTACCTTTAGAAGTTCGGA+GGG | 0.640489 | 4_2:+70404583 | None:intergenic |
| GCAGCAGGACAACTCGTCGA+AGG | 0.643270 | 4_2:-70404329 | Msa0619310:CDS |
| GAAGACTATGCAGGTTCACG+AGG | 0.645466 | 4_2:+70403863 | None:intergenic |
| AGATGGATATTGCAATAGAG+AGG | 0.647680 | 4_2:-70404292 | Msa0619310:CDS |
| TAATCACCTATTCATAAATG+GGG | 0.647734 | 4_2:+70403695 | None:intergenic |
| TGTGGAAAACAACAGCTGAA+GGG | 0.647786 | 4_2:-70404633 | Msa0619310:CDS |
| GTTTGAAATAGTGATTCATG+AGG | 0.660995 | 4_2:+70404713 | None:intergenic |
| ACGTCTCGCACAAAATCGAG+AGG | 0.680873 | 4_2:-70406062 | Msa0619310:CDS |
| GATGGAGTATGAACACTGGG+TGG | 0.682481 | 4_2:-70404821 | Msa0619310:CDS |
| TTGATGGTGAGTCACCAAGG+TGG | 0.728144 | 4_2:-70407346 | Msa0619310:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATAAATTTAGTAAACT+TGG | + | chr4_2:70404208-70404227 | None:intergenic | 15.0% |
| !!! | TAAGTTTTTATAAAGCAAAA+AGG | + | chr4_2:70405535-70405554 | None:intergenic | 15.0% |
| !!! | TTGATATATAATATTAGCTT+TGG | - | chr4_2:70406058-70406077 | Msa0619310:CDS | 15.0% |
| !!! | TGATATATAATATTAGCTTT+GGG | - | chr4_2:70406059-70406078 | Msa0619310:CDS | 15.0% |
| !! | TTGACAATAATAAACTTAAT+TGG | + | chr4_2:70406979-70406998 | None:intergenic | 15.0% |
| !! | TGATTGTTTATATGACTAAA+TGG | - | chr4_2:70404000-70404019 | Msa0619310:CDS | 20.0% |
| !!! | TGATTATTTAACTTCATTTC+AGG | + | chr4_2:70404176-70404195 | None:intergenic | 20.0% |
| !! | TGAAATGAAGTTAAATAATC+AGG | - | chr4_2:70404175-70404194 | Msa0619310:intron | 20.0% |
| !! | CCTTTAACAAAATTTCAAAA+TGG | + | chr4_2:70404691-70404710 | None:intergenic | 20.0% |
| !!! | CCATTTTGAAATTTTGTTAA+AGG | - | chr4_2:70404688-70404707 | Msa0619310:CDS | 20.0% |
| !! | AGTAACAAAATTTATTAGAG+AGG | - | chr4_2:70405825-70405844 | Msa0619310:intron | 20.0% |
| !! | GTAACAAAATTTATTAGAGA+GGG | - | chr4_2:70405826-70405845 | Msa0619310:intron | 20.0% |
| !!! | GAAATTTTGGAAGAAATTAT+TGG | + | chr4_2:70405908-70405927 | None:intergenic | 20.0% |
| !!! | AGTTGTTATTTCTGTAAATT+AGG | + | chr4_2:70406155-70406174 | None:intergenic | 20.0% |
| !!! | AGAAATAACAACTTTTAAGA+TGG | - | chr4_2:70406162-70406181 | Msa0619310:intron | 20.0% |
| !! | ATATCAGTGATATACAAATT+GGG | - | chr4_2:70406251-70406270 | Msa0619310:intron | 20.0% |
| !! | AATATATAACATACATTACC+TGG | + | chr4_2:70406761-70406780 | None:intergenic | 20.0% |
| !! | CACAAATTACCAAATTAAAA+AGG | - | chr4_2:70406927-70406946 | Msa0619310:CDS | 20.0% |
| !!! | CTAGTTTAACCTTTTTAATT+TGG | + | chr4_2:70406939-70406958 | None:intergenic | 20.0% |
| !! | CAAATTAAAAAGGTTAAACT+AGG | - | chr4_2:70406937-70406956 | Msa0619310:CDS | 20.0% |
| !! | TAAGTTTATTATTGTCAAAC+AGG | - | chr4_2:70406981-70407000 | Msa0619310:intron | 20.0% |
| !! | ATAATCACCTATTCATAAAT+GGG | + | chr4_2:70407310-70407329 | None:intergenic | 20.0% |
| !!! | TTTGGTTCTGTATTTTTTGA+TGG | - | chr4_2:70403639-70403658 | Msa0619310:three_prime_UTR | 25.0% |
| !!! | ATTTGACTTTTGCTTTTACA+AGG | - | chr4_2:70403938-70403957 | Msa0619310:CDS | 25.0% |
| ! | TGTTCTATAGACAAACTAAT+TGG | + | chr4_2:70404031-70404050 | None:intergenic | 25.0% |
| !!! | ATTAGTTTGTCTATAGAACA+TGG | - | chr4_2:70404031-70404050 | Msa0619310:intron | 25.0% |
| ! | TTTGTTTCCTCAAGAAATAT+TGG | - | chr4_2:70404074-70404093 | Msa0619310:intron | 25.0% |
| ! | ATATACACCAATATTTCTTG+AGG | + | chr4_2:70404084-70404103 | None:intergenic | 25.0% |
| ! | CATATAGTAAATTGGTGTAT+GGG | + | chr4_2:70404110-70404129 | None:intergenic | 25.0% |
| ! | CATACACCAATTTACTATAT+GGG | - | chr4_2:70404109-70404128 | Msa0619310:intron | 25.0% |
| !!! | TGTATGGACTATTTTTTACA+CGG | - | chr4_2:70404533-70404552 | Msa0619310:intron | 25.0% |
| !! | TCAATCACATTAATCCATTT+TGG | - | chr4_2:70404612-70404631 | Msa0619310:CDS | 25.0% |
| !!! | TGCGTTTTTTTATGCTTATA+AGG | - | chr4_2:70404893-70404912 | Msa0619310:intron | 25.0% |
| ! | GATATTGAACAATATGAAGT+AGG | + | chr4_2:70405174-70405193 | None:intergenic | 25.0% |
| ! | GGATTGGATTCTAATAATTT+AGG | - | chr4_2:70405264-70405283 | Msa0619310:intron | 25.0% |
| !!! | TCTAATAATTTAGGTTTTGC+TGG | - | chr4_2:70405273-70405292 | Msa0619310:intron | 25.0% |
| !!! | GTTGGTTTGTTATTAAATTC+TGG | - | chr4_2:70405310-70405329 | Msa0619310:intron | 25.0% |
| ! | CAAAAAAGTGATTTCATCAT+AGG | + | chr4_2:70405378-70405397 | None:intergenic | 25.0% |
| !! | CTTACTGCAGATATATATTT+TGG | - | chr4_2:70405551-70405570 | Msa0619310:intron | 25.0% |
| !! | ACAAAAGCAACATTGATTAA+AGG | + | chr4_2:70405686-70405705 | None:intergenic | 25.0% |
| !!! | TCTATTCTCAAACTAGTTTT+TGG | - | chr4_2:70406117-70406136 | Msa0619310:intron | 25.0% |
| ! | CATATCAGTGATATACAAAT+TGG | - | chr4_2:70406250-70406269 | Msa0619310:intron | 25.0% |
| ! | TATCAGTGATATACAAATTG+GGG | - | chr4_2:70406252-70406271 | Msa0619310:intron | 25.0% |
| ! | CGTATAATTTAGATTAGATG+AGG | - | chr4_2:70406785-70406804 | Msa0619310:intron | 25.0% |
| !! | TTTGGTAATTTGTGTGTTAA+TGG | + | chr4_2:70406921-70406940 | None:intergenic | 25.0% |
| ! | TAATCACCTATTCATAAATG+GGG | + | chr4_2:70407309-70407328 | None:intergenic | 25.0% |
| ! | CATAATCACCTATTCATAAA+TGG | + | chr4_2:70407311-70407330 | None:intergenic | 25.0% |
| ! | CATTTATGAATAGGTGATTA+TGG | - | chr4_2:70407309-70407328 | Msa0619310:five_prime_UTR | 25.0% |
| GAAGAGATTGAATTGGTTAA+TGG | - | chr4_2:70403603-70403622 | Msa0619310:three_prime_UTR | 30.0% | |
| !! | ACATAACAGCTTTGAACTAT+TGG | - | chr4_2:70403814-70403833 | Msa0619310:three_prime_UTR | 30.0% |
| !!! | CAAGGCATTTTATTGATTCT+TGG | - | chr4_2:70403956-70403975 | Msa0619310:CDS | 30.0% |
| TGTTTATATGACTAAATGGC+AGG | - | chr4_2:70404004-70404023 | Msa0619310:intron | 30.0% | |
| ACAAATTGAGAAGATGATGA+AGG | + | chr4_2:70404059-70404078 | None:intergenic | 30.0% | |
| CCATATAGTAAATTGGTGTA+TGG | + | chr4_2:70404111-70404130 | None:intergenic | 30.0% | |
| CCATACACCAATTTACTATA+TGG | - | chr4_2:70404108-70404127 | Msa0619310:intron | 30.0% | |
| GTTCTTCCCATATAGTAAAT+TGG | + | chr4_2:70404118-70404137 | None:intergenic | 30.0% | |
| GAAGAACATTTCAAGAGTAA+TGG | - | chr4_2:70404131-70404150 | Msa0619310:intron | 30.0% | |
| !!! | GATGCTTCTTTTGGAATATT+GGG | - | chr4_2:70404313-70404332 | Msa0619310:CDS | 30.0% |
| AGCTAACACAGTTACTAATA+AGG | - | chr4_2:70404363-70404382 | Msa0619310:CDS | 30.0% | |
| ! | TGGGTTGAACAAAATTAATG+TGG | + | chr4_2:70404498-70404517 | None:intergenic | 30.0% |
| TCCATACATGTTTGATATGA+CGG | + | chr4_2:70404521-70404540 | None:intergenic | 30.0% | |
| !!! | GTATGGACTATTTTTTACAC+GGG | - | chr4_2:70404534-70404553 | Msa0619310:intron | 30.0% |
| !!! | TATGGACTATTTTTTACACG+GGG | - | chr4_2:70404535-70404554 | Msa0619310:intron | 30.0% |
| TTGAACTTAACATTGCACAT+GGG | + | chr4_2:70404562-70404581 | None:intergenic | 30.0% | |
| ATTGCTCAATCAGTATTTCA+TGG | - | chr4_2:70404717-70404736 | Msa0619310:CDS | 30.0% | |
| CTAAGTTTCTACAAAGTTTG+AGG | + | chr4_2:70404778-70404797 | None:intergenic | 30.0% | |
| !!! | AGCATTTTAGAACCACATTT+TGG | - | chr4_2:70404811-70404830 | Msa0619310:CDS | 30.0% |
| TAAGAGTCGTTTGAAGAAAA+AGG | - | chr4_2:70404969-70404988 | Msa0619310:intron | 30.0% | |
| GAATCAAATGCTTGTTTGTT+TGG | + | chr4_2:70405030-70405049 | None:intergenic | 30.0% | |
| AAATTGCAGGGATTGTATAT+TGG | - | chr4_2:70405237-70405256 | Msa0619310:intron | 30.0% | |
| AACCTACAAAATCAACTACA+AGG | - | chr4_2:70405442-70405461 | Msa0619310:intron | 30.0% | |
| ACCTACAAAATCAACTACAA+GGG | - | chr4_2:70405443-70405462 | Msa0619310:intron | 30.0% | |
| !! | ACTGCAGATATATATTTTGG+TGG | - | chr4_2:70405554-70405573 | Msa0619310:intron | 30.0% |
| ! | ACATTGATTAAAGGAAAGGA+GGG | + | chr4_2:70405677-70405696 | None:intergenic | 30.0% |
| ! | AACATTGATTAAAGGAAAGG+AGG | + | chr4_2:70405678-70405697 | None:intergenic | 30.0% |
| ! | AGCAACATTGATTAAAGGAA+AGG | + | chr4_2:70405681-70405700 | None:intergenic | 30.0% |
| TTAATGCAGAGAGAAATGTT+TGG | - | chr4_2:70405790-70405809 | Msa0619310:intron | 30.0% | |
| ! | AGAGAGAAATGTTTGGAATA+AGG | - | chr4_2:70405797-70405816 | Msa0619310:intron | 30.0% |
| TGGATTCAGAGTTTCAAAAT+TGG | + | chr4_2:70405888-70405907 | None:intergenic | 30.0% | |
| ! | TTCCAAAATTTCAAGTAAGC+TGG | - | chr4_2:70405916-70405935 | Msa0619310:CDS | 30.0% |
| GAATAGAGTTCAATACAAGA+AGG | + | chr4_2:70406104-70406123 | None:intergenic | 30.0% | |
| ATTCCAACATTTGTCTGTTT+AGG | + | chr4_2:70406210-70406229 | None:intergenic | 30.0% | |
| AGACAAATGTTGGAATTGAA+AGG | - | chr4_2:70406214-70406233 | Msa0619310:intron | 30.0% | |
| ! | GTTTGAAATAGTGATTCATG+AGG | + | chr4_2:70406291-70406310 | None:intergenic | 30.0% |
| ! | GATGTTTTCTATGTTATCAC+TGG | - | chr4_2:70406343-70406362 | Msa0619310:intron | 30.0% |
| ! | GTTGATCAAGTATATCGATT+AGG | + | chr4_2:70406445-70406464 | None:intergenic | 30.0% |
| ATCGATATACTTGATCAACA+TGG | - | chr4_2:70406446-70406465 | Msa0619310:intron | 30.0% | |
| TCGATATACTTGATCAACAT+GGG | - | chr4_2:70406447-70406466 | Msa0619310:intron | 30.0% | |
| CTGTCAATGGTTCAATTAAA+GGG | + | chr4_2:70406545-70406564 | None:intergenic | 30.0% | |
| TCTGTCAATGGTTCAATTAA+AGG | + | chr4_2:70406546-70406565 | None:intergenic | 30.0% | |
| TTTAATTGAACCATTGACAG+AGG | - | chr4_2:70406545-70406564 | Msa0619310:intron | 30.0% | |
| ! | TTTTTCCATACCTTGTGAAA+GGG | + | chr4_2:70406625-70406644 | None:intergenic | 30.0% |
| !! | AGTTTTATCAGAAGTATGCA+TGG | - | chr4_2:70406883-70406902 | Msa0619310:CDS | 30.0% |
| ATAACTCCCCATTTATGAAT+AGG | - | chr4_2:70407300-70407319 | Msa0619310:five_prime_UTR | 30.0% | |
| GCAATTGGAAGAGATTGAAT+TGG | - | chr4_2:70403596-70403615 | Msa0619310:three_prime_UTR | 35.0% | |
| ! | AATGGTTTGCGTTGAGAATT+TGG | - | chr4_2:70403621-70403640 | Msa0619310:three_prime_UTR | 35.0% |
| TTTATCTTCCGAGTAAATCG+AGG | - | chr4_2:70403750-70403769 | Msa0619310:three_prime_UTR | 35.0% | |
| TGTTGTGCTCTTTCTATGAT+CGG | - | chr4_2:70403852-70403871 | Msa0619310:exon | 35.0% | |
| !! | TATTGATTCTTGGCAGTTCA+TGG | - | chr4_2:70403966-70403985 | Msa0619310:CDS | 35.0% |
| TGCTAAATACCTATAGTCAG+AGG | - | chr4_2:70404291-70404310 | Msa0619310:CDS | 35.0% | |
| !!! | GGATGCTTCTTTTGGAATAT+TGG | - | chr4_2:70404312-70404331 | Msa0619310:CDS | 35.0% |
| ! | TAGTAACTGTGTTAGCTTCT+TGG | + | chr4_2:70404360-70404379 | None:intergenic | 35.0% |
| ! | TTGTCGCTTCAACATAATCA+AGG | - | chr4_2:70404470-70404489 | Msa0619310:CDS | 35.0% |
| TACATGTTTGATATGACGGT+GGG | + | chr4_2:70404517-70404536 | None:intergenic | 35.0% | |
| ATACATGTTTGATATGACGG+TGG | + | chr4_2:70404518-70404537 | None:intergenic | 35.0% | |
| ACCGTCATATCAAACATGTA+TGG | - | chr4_2:70404517-70404536 | Msa0619310:intron | 35.0% | |
| GTTGAACTTAACATTGCACA+TGG | + | chr4_2:70404563-70404582 | None:intergenic | 35.0% | |
| !! | ATTGGTCGACTTTTCCAAAA+TGG | + | chr4_2:70404629-70404648 | None:intergenic | 35.0% |
| AAAAGTCGACCAATCTGAAA+GGG | - | chr4_2:70404635-70404654 | Msa0619310:CDS | 35.0% | |
| TTGAGGCATAAGGAAAGAAT+GGG | + | chr4_2:70404761-70404780 | None:intergenic | 35.0% | |
| ! | TTTGAGGCATAAGGAAAGAA+TGG | + | chr4_2:70404762-70404781 | None:intergenic | 35.0% |
| ! | TCTACAAAGTTTGAGGCATA+AGG | + | chr4_2:70404771-70404790 | None:intergenic | 35.0% |
| ACATCCAAAATTTGGAAGCA+GGG | + | chr4_2:70404867-70404886 | None:intergenic | 35.0% | |
| GTCGTTTGAAGAAAAAGGTT+TGG | - | chr4_2:70404974-70404993 | Msa0619310:intron | 35.0% | |
| AGAGCTAGATCATACAAAAC+AGG | - | chr4_2:70405120-70405139 | Msa0619310:intron | 35.0% | |
| CATCAAGAGATTGACAAATG+AGG | + | chr4_2:70405212-70405231 | None:intergenic | 35.0% | |
| TCTTGATGCAACAAAATTGC+AGG | - | chr4_2:70405224-70405243 | Msa0619310:intron | 35.0% | |
| CTTGATGCAACAAAATTGCA+GGG | - | chr4_2:70405225-70405244 | Msa0619310:intron | 35.0% | |
| !! | ATTGTATATTGGTGGTGGAT+TGG | - | chr4_2:70405248-70405267 | Msa0619310:intron | 35.0% |
| TGTCACTGCTCTTATAAATG+TGG | - | chr4_2:70405348-70405367 | Msa0619310:intron | 35.0% | |
| !! | TCCCTTGTAGTTGATTTTGT+AGG | + | chr4_2:70405447-70405466 | None:intergenic | 35.0% |
| AAAAGGACATGCATGCAAAA+AGG | + | chr4_2:70405518-70405537 | None:intergenic | 35.0% | |
| !!! | GCAGATATATATTTTGGTGG+TGG | - | chr4_2:70405557-70405576 | Msa0619310:intron | 35.0% |
| AGTGAGGTCATTGCTAAAAT+AGG | + | chr4_2:70405639-70405658 | None:intergenic | 35.0% | |
| !!! | CTACTCCTGTGGAAATTTTT+TGG | - | chr4_2:70405851-70405870 | Msa0619310:intron | 35.0% |
| TCACACCAAAAAATTTCCAC+AGG | + | chr4_2:70405859-70405878 | None:intergenic | 35.0% | |
| ! | AGCCAGCTTACTTGAAATTT+TGG | + | chr4_2:70405921-70405940 | None:intergenic | 35.0% |
| TTAGACACTACATTCTGTTC+TGG | - | chr4_2:70406035-70406054 | Msa0619310:CDS | 35.0% | |
| CAAGAAGGAAAACATACTCA+AGG | + | chr4_2:70406089-70406108 | None:intergenic | 35.0% | |
| TTAAGATGGAGTATGAACAC+TGG | - | chr4_2:70406176-70406195 | Msa0619310:intron | 35.0% | |
| TAAGATGGAGTATGAACACT+GGG | - | chr4_2:70406177-70406196 | Msa0619310:intron | 35.0% | |
| AGACCTAAACAGACAAATGT+TGG | - | chr4_2:70406204-70406223 | Msa0619310:intron | 35.0% | |
| CAAATTGGGGAACTTGTAAA+TGG | - | chr4_2:70406265-70406284 | Msa0619310:intron | 35.0% | |
| ! | AGGTGTTACCTTTAGAAGTT+CGG | + | chr4_2:70406425-70406444 | None:intergenic | 35.0% |
| CGATATACTTGATCAACATG+GGG | - | chr4_2:70406448-70406467 | Msa0619310:intron | 35.0% | |
| CACAAACATACATTATGCCA+TGG | + | chr4_2:70406501-70406520 | None:intergenic | 35.0% | |
| ATGTTTGTGATGAGATTTGC+AGG | - | chr4_2:70406512-70406531 | Msa0619310:intron | 35.0% | |
| GCATGACTTCTCAAGATTAT+AGG | + | chr4_2:70406586-70406605 | None:intergenic | 35.0% | |
| ! | GTTTTTCCATACCTTGTGAA+AGG | + | chr4_2:70406626-70406645 | None:intergenic | 35.0% |
| ACAAGGTATGGAAAAACTAC+AGG | - | chr4_2:70406629-70406648 | Msa0619310:intron | 35.0% | |
| CAAGGTATGGAAAAACTACA+GGG | - | chr4_2:70406630-70406649 | Msa0619310:intron | 35.0% | |
| TCTATTGCAATATCCATCTG+TGG | + | chr4_2:70406708-70406727 | None:intergenic | 35.0% | |
| AGATGGATATTGCAATAGAG+AGG | - | chr4_2:70406709-70406728 | Msa0619310:intron | 35.0% | |
| TTAGATGAGGTTATGAGTAG+TGG | - | chr4_2:70406798-70406817 | Msa0619310:intron | 35.0% | |
| TAAAACTTATACTCCTGCCA+TGG | + | chr4_2:70406870-70406889 | None:intergenic | 35.0% | |
| TGAATACTTTCAACGCCTAA+GGG | - | chr4_2:70407089-70407108 | Msa0619310:intron | 35.0% | |
| ! | AAAGTTTGCTCAAATCCCTT+AGG | + | chr4_2:70407107-70407126 | None:intergenic | 35.0% |
| TAAGGGATTTGAGCAAACTT+TGG | - | chr4_2:70407106-70407125 | Msa0619310:intron | 35.0% | |
| TAGCTCCATGATCATGATTA+TGG | - | chr4_2:70407193-70407212 | Msa0619310:five_prime_UTR | 35.0% | |
| ACGTTAACACTTGATAAGCT+GGG | + | chr4_2:70407219-70407238 | None:intergenic | 35.0% | |
| AACGTTAACACTTGATAAGC+TGG | + | chr4_2:70407220-70407239 | None:intergenic | 35.0% | |
| !!! | TTTTTGATGGTGAGTCACCA+AGG | - | chr4_2:70403652-70403671 | Msa0619310:three_prime_UTR | 40.0% |
| TGGTTCTTCCTCGATTTACT+CGG | + | chr4_2:70403761-70403780 | None:intergenic | 40.0% | |
| AAGAACCAAGTACGAGAAAG+AGG | - | chr4_2:70403773-70403792 | Msa0619310:three_prime_UTR | 40.0% | |
| GATTACCTCTTTCTCGTACT+TGG | + | chr4_2:70403781-70403800 | None:intergenic | 40.0% | |
| !! | AAGAAGCATCCTCTGACTAT+AGG | + | chr4_2:70404303-70404322 | None:intergenic | 40.0% |
| ! | TAGTCAGAGGATGCTTCTTT+TGG | - | chr4_2:70404304-70404323 | Msa0619310:CDS | 40.0% |
| ! | TAACTGTGTTAGCTTCTTGG+TGG | + | chr4_2:70404357-70404376 | None:intergenic | 40.0% |
| ! | TTGCTACTTGCTTGATATCG+CGG | - | chr4_2:70404396-70404415 | Msa0619310:CDS | 40.0% |
| TATGTTGAAGCGACAAAGTG+CGG | + | chr4_2:70404466-70404485 | None:intergenic | 40.0% | |
| GAAAAGTCGACCAATCTGAA+AGG | - | chr4_2:70404634-70404653 | Msa0619310:CDS | 40.0% | |
| TGCAAAGTGAGTCCAAAATG+TGG | + | chr4_2:70404826-70404845 | None:intergenic | 40.0% | |
| CATCCAAAATTTGGAAGCAG+GGG | + | chr4_2:70404866-70404885 | None:intergenic | 40.0% | |
| GACATCCAAAATTTGGAAGC+AGG | + | chr4_2:70404868-70404887 | None:intergenic | 40.0% | |
| ! | GCTTCCAAATTTTGGATGTC+TGG | - | chr4_2:70404868-70404887 | Msa0619310:intron | 40.0% |
| CAAGCCAGACATCCAAAATT+TGG | + | chr4_2:70404875-70404894 | None:intergenic | 40.0% | |
| GATTCCTGACGTTTCATAAC+AGG | - | chr4_2:70405045-70405064 | Msa0619310:intron | 40.0% | |
| !! | GTGTCGTTTAAAGCTGTTAC+AGG | - | chr4_2:70405090-70405109 | Msa0619310:intron | 40.0% |
| TTGCAGGGATTGTATATTGG+TGG | - | chr4_2:70405240-70405259 | Msa0619310:intron | 40.0% | |
| !! | TTTGCTGGCTCTGTAAATTC+AGG | - | chr4_2:70405288-70405307 | Msa0619310:intron | 40.0% |
| AATAGGATTTGAGTAGCTGC+TGG | + | chr4_2:70405622-70405641 | None:intergenic | 40.0% | |
| GAGTATCTGAATGTACAGTG+AGG | + | chr4_2:70405655-70405674 | None:intergenic | 40.0% | |
| TCTATGTTATCACTGGCATG+TGG | - | chr4_2:70406350-70406369 | Msa0619310:intron | 40.0% | |
| ATGTGGAAAACAACAGCTGA+AGG | - | chr4_2:70406367-70406386 | Msa0619310:intron | 40.0% | |
| TGTGGAAAACAACAGCTGAA+GGG | - | chr4_2:70406368-70406387 | Msa0619310:intron | 40.0% | |
| ! | GAAGGGTTTTTCTTGTGGAT+TGG | - | chr4_2:70406385-70406404 | Msa0619310:intron | 40.0% |
| ! | GTTACCTTTAGAAGTTCGGA+GGG | + | chr4_2:70406421-70406440 | None:intergenic | 40.0% |
| ! | TGTTACCTTTAGAAGTTCGG+AGG | + | chr4_2:70406422-70406441 | None:intergenic | 40.0% |
| ! | CTGCTGTCATATTTCTACCA+TGG | - | chr4_2:70406481-70406500 | Msa0619310:intron | 40.0% |
| AACCATTGACAGAGGAACAA+CGG | - | chr4_2:70406553-70406572 | Msa0619310:intron | 40.0% | |
| AGGAACTTACATTCCACAGA+TGG | - | chr4_2:70406692-70406711 | Msa0619310:CDS | 40.0% | |
| GACACAACAGTTATGAGTAG+TGG | - | chr4_2:70406830-70406849 | Msa0619310:CDS | 40.0% | |
| TGGAAAACAATGCTGATCCA+TGG | - | chr4_2:70406850-70406869 | Msa0619310:CDS | 40.0% | |
| GTGAATACTTTCAACGCCTA+AGG | - | chr4_2:70407088-70407107 | Msa0619310:intron | 40.0% | |
| ACGTTCAAAAAACCATGTCC+AGG | - | chr4_2:70407235-70407254 | Msa0619310:five_prime_UTR | 40.0% | |
| CGTTCAAAAAACCATGTCCA+GGG | - | chr4_2:70407236-70407255 | Msa0619310:five_prime_UTR | 40.0% | |
| CTGAAAAAGACATGCCACCT+TGG | + | chr4_2:70403672-70403691 | None:intergenic | 45.0% | |
| CTCACTTTGCACTGCAGATT+AGG | - | chr4_2:70404835-70404854 | Msa0619310:CDS | 45.0% | |
| ACTTTGCACTGCAGATTAGG+AGG | - | chr4_2:70404838-70404857 | Msa0619310:CDS | 45.0% | |
| CTTTGCACTGCAGATTAGGA+GGG | - | chr4_2:70404839-70404858 | Msa0619310:CDS | 45.0% | |
| TGAGCCTGTTATGAAACGTC+AGG | + | chr4_2:70405052-70405071 | None:intergenic | 45.0% | |
| CAGGGATTGTATATTGGTGG+TGG | - | chr4_2:70405243-70405262 | Msa0619310:intron | 45.0% | |
| !! | CTGGCTCTGTAAATTCAGGT+TGG | - | chr4_2:70405292-70405311 | Msa0619310:intron | 45.0% |
| !! | TTTGGTGGTGGACCTAAACT+AGG | - | chr4_2:70405569-70405588 | Msa0619310:intron | 45.0% |
| !! | TTGGTGGTGGACCTAAACTA+GGG | - | chr4_2:70405570-70405589 | Msa0619310:intron | 45.0% |
| GGACCTAAACTAGGGCTTAT+TGG | - | chr4_2:70405578-70405597 | Msa0619310:intron | 45.0% | |
| AGGCCAATAAGCCCTAGTTT+AGG | + | chr4_2:70405584-70405603 | None:intergenic | 45.0% | |
| GCTGGCTATTATGTACCTAG+TGG | - | chr4_2:70405934-70405953 | Msa0619310:CDS | 45.0% | |
| GCTATTATGTACCTAGTGGC+AGG | - | chr4_2:70405938-70405957 | Msa0619310:intron | 45.0% | |
| ! | CAGCTGAAGGGTTTTTCTTG+TGG | - | chr4_2:70406380-70406399 | Msa0619310:intron | 45.0% |
| !!! | GGGTTTTTCTTGTGGATTGG+AGG | - | chr4_2:70406388-70406407 | Msa0619310:intron | 45.0% |
| GTGATGAGATTTGCAGGTTC+TGG | - | chr4_2:70406518-70406537 | Msa0619310:intron | 45.0% | |
| AACCGTTGTTCCTCTGTCAA+TGG | + | chr4_2:70406558-70406577 | None:intergenic | 45.0% | |
| !! | AAAGGGCATCTTCTGCTTGT+CGG | + | chr4_2:70406608-70406627 | None:intergenic | 45.0% |
| AGATGCCCTTTCACAAGGTA+TGG | - | chr4_2:70406617-70406636 | Msa0619310:intron | 45.0% | |
| GGATATTGCAATAGAGAGGC+TGG | - | chr4_2:70406713-70406732 | Msa0619310:intron | 45.0% | |
| AAACAATGCTGATCCATGGC+AGG | - | chr4_2:70406854-70406873 | Msa0619310:CDS | 45.0% | |
| CTCTTGCATGAAGACTATGC+AGG | + | chr4_2:70407150-70407169 | None:intergenic | 45.0% | |
| CTGGGCCATAATCATGATCA+TGG | + | chr4_2:70407201-70407220 | None:intergenic | 45.0% | |
| AAAAACCATGTCCAGGGTCT+CGG | - | chr4_2:70407242-70407261 | Msa0619310:five_prime_UTR | 45.0% | |
| !! | TTGATGGTGAGTCACCAAGG+TGG | - | chr4_2:70403655-70403674 | Msa0619310:three_prime_UTR | 50.0% |
| TCGCATCAGCCCTTTCAGAT+TGG | + | chr4_2:70404647-70404666 | None:intergenic | 50.0% | |
| ! | GGTCCCCTGCTTCCAAATTT+TGG | - | chr4_2:70404860-70404879 | Msa0619310:intron | 50.0% |
| ACGTCTCGCACAAAATCGAG+AGG | - | chr4_2:70404939-70404958 | Msa0619310:intron | 50.0% | |
| ! | GGCTTATTGGCCTCACCATT+GGG | - | chr4_2:70405591-70405610 | Msa0619310:intron | 50.0% |
| GATTTGAGTAGCTGCTGGTC+TGG | + | chr4_2:70405617-70405636 | None:intergenic | 50.0% | |
| !! | TAGAGAGGGTACTACTCCTG+TGG | - | chr4_2:70405840-70405859 | Msa0619310:intron | 50.0% |
| TTGTACACAGTCCTGCCACT+AGG | + | chr4_2:70405952-70405971 | None:intergenic | 50.0% | |
| GATGGAGTATGAACACTGGG+TGG | - | chr4_2:70406180-70406199 | Msa0619310:intron | 50.0% | |
| TCGACCCTCCGAACTTCTAA+AGG | - | chr4_2:70406414-70406433 | Msa0619310:intron | 50.0% | |
| GCAGAAGATGCCCTTTCACA+AGG | - | chr4_2:70406612-70406631 | Msa0619310:intron | 50.0% | |
| CTTGTTGACACAGTTGCAGC+AGG | - | chr4_2:70406657-70406676 | Msa0619310:CDS | 50.0% | |
| AATAGAGAGGCTGGAAGCTC+TGG | - | chr4_2:70406722-70406741 | Msa0619310:intron | 50.0% | |
| !! | TCTGGCTAGCTTTGTGAACC+AGG | - | chr4_2:70406740-70406759 | Msa0619310:intron | 50.0% |
| ACAGGCTGATCATCTTCGAC+AGG | - | chr4_2:70406999-70407018 | Msa0619310:intron | 50.0% | |
| CCATCGAGCAGTTTGACGTA+CGG | + | chr4_2:70407055-70407074 | None:intergenic | 50.0% | |
| GAAGACTATGCAGGTTCACG+AGG | + | chr4_2:70407141-70407160 | None:intergenic | 50.0% | |
| ! | GGGCTTATTGGCCTCACCAT+TGG | - | chr4_2:70405590-70405609 | Msa0619310:intron | 55.0% |
| CCGTACGTCAAACTGCTCGA+TGG | - | chr4_2:70407052-70407071 | Msa0619310:intron | 55.0% | |
| TGCTCGATGGCTGCTTGCTT+TGG | - | chr4_2:70407065-70407084 | Msa0619310:intron | 55.0% | |
| GCTCGATGGCTGCTTGCTTT+GGG | - | chr4_2:70407066-70407085 | Msa0619310:intron | 55.0% | |
| TGCAGGTTCACGAGGACGAT+TGG | + | chr4_2:70407133-70407152 | None:intergenic | 55.0% | |
| ! | TAGCTGCTGGTCTGGCCCAA+TGG | + | chr4_2:70405609-70405628 | None:intergenic | 60.0% |
| GCAGCAGGACAACTCGTCGA+AGG | - | chr4_2:70406672-70406691 | Msa0619310:CDS | 60.0% | |
| AGCAACCGAGACCCTGGACA+TGG | + | chr4_2:70407250-70407269 | None:intergenic | 60.0% | |
| ATGTCCAGGGTCTCGGTTGC+TGG | - | chr4_2:70407249-70407268 | Msa0619310:five_prime_UTR | 60.0% | |
| TTTGCCAGCAACCGAGACCC+TGG | + | chr4_2:70407256-70407275 | None:intergenic | 60.0% | |
| ! | GCTGGTCTGGCCCAATGGTG+AGG | + | chr4_2:70405604-70405623 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 70403592 | 70407431 | 70403592 | ID=Msa0619310;Name=Msa0619310 |
| chr4_2 | mRNA | 70403592 | 70407431 | 70403592 | ID=Msa0619310-mRNA-1;Parent=Msa0619310;Name=Msa0619310-mRNA-1;_AED=0.18;_eAED=0.18;_QI=306|1|1|1|0.87|0.77|9|276|358 |
| chr4_2 | exon | 70403592 | 70404020 | 70403592 | ID=Msa0619310-mRNA-1:exon:20572;Parent=Msa0619310-mRNA-1 |
| chr4_2 | exon | 70404262 | 70404489 | 70404262 | ID=Msa0619310-mRNA-1:exon:20571;Parent=Msa0619310-mRNA-1 |
| chr4_2 | exon | 70404588 | 70404859 | 70404588 | ID=Msa0619310-mRNA-1:exon:20570;Parent=Msa0619310-mRNA-1 |
| chr4_2 | exon | 70405714 | 70405777 | 70405714 | ID=Msa0619310-mRNA-1:exon:20569;Parent=Msa0619310-mRNA-1 |
| chr4_2 | exon | 70405882 | 70405956 | 70405882 | ID=Msa0619310-mRNA-1:exon:20568;Parent=Msa0619310-mRNA-1 |
| chr4_2 | exon | 70406033 | 70406092 | 70406033 | ID=Msa0619310-mRNA-1:exon:20567;Parent=Msa0619310-mRNA-1 |
| chr4_2 | exon | 70406639 | 70406716 | 70406639 | ID=Msa0619310-mRNA-1:exon:20566;Parent=Msa0619310-mRNA-1 |
| chr4_2 | exon | 70406827 | 70406997 | 70406827 | ID=Msa0619310-mRNA-1:exon:20565;Parent=Msa0619310-mRNA-1 |
| chr4_2 | exon | 70407150 | 70407431 | 70407150 | ID=Msa0619310-mRNA-1:exon:20564;Parent=Msa0619310-mRNA-1 |
| chr4_2 | five_prime_UTR | 70407150 | 70407431 | 70407150 | ID=Msa0619310-mRNA-1:five_prime_utr;Parent=Msa0619310-mRNA-1 |
| chr4_2 | five_prime_UTR | 70406974 | 70406997 | 70406974 | ID=Msa0619310-mRNA-1:five_prime_utr;Parent=Msa0619310-mRNA-1 |
| chr4_2 | CDS | 70406827 | 70406973 | 70406827 | ID=Msa0619310-mRNA-1:cds;Parent=Msa0619310-mRNA-1 |
| chr4_2 | CDS | 70406639 | 70406716 | 70406639 | ID=Msa0619310-mRNA-1:cds;Parent=Msa0619310-mRNA-1 |
| chr4_2 | CDS | 70406033 | 70406092 | 70406033 | ID=Msa0619310-mRNA-1:cds;Parent=Msa0619310-mRNA-1 |
| chr4_2 | CDS | 70405882 | 70405956 | 70405882 | ID=Msa0619310-mRNA-1:cds;Parent=Msa0619310-mRNA-1 |
| chr4_2 | CDS | 70405714 | 70405777 | 70405714 | ID=Msa0619310-mRNA-1:cds;Parent=Msa0619310-mRNA-1 |
| chr4_2 | CDS | 70404588 | 70404859 | 70404588 | ID=Msa0619310-mRNA-1:cds;Parent=Msa0619310-mRNA-1 |
| chr4_2 | CDS | 70404262 | 70404489 | 70404262 | ID=Msa0619310-mRNA-1:cds;Parent=Msa0619310-mRNA-1 |
| chr4_2 | CDS | 70403868 | 70404020 | 70403868 | ID=Msa0619310-mRNA-1:cds;Parent=Msa0619310-mRNA-1 |
| chr4_2 | three_prime_UTR | 70403592 | 70403867 | 70403592 | ID=Msa0619310-mRNA-1:three_prime_utr;Parent=Msa0619310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
