AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030130 MtrunA17_Chr1g0187601 98.558 624 9 0 1 624 1 624 0.0 1286
Msa0030130 MtrunA17_Chr1g0167381 82.051 624 111 1 1 623 1 624 0.0 1091
Msa0030130 MtrunA17_Chr1g0183721 68.960 625 163 3 1 624 1 595 0.0 926
Msa0030130 MtrunA17_Chr3g0112341 47.441 508 246 8 89 588 151 645 2.39e-165 488
Msa0030130 MtrunA17_Chr5g0435751 44.972 527 250 8 71 589 104 598 1.49e-161 476
Msa0030130 MtrunA17_Chr1g0159741 45.349 516 252 11 91 593 141 639 1.60e-158 470
Msa0030130 MtrunA17_Chr1g0171781 41.100 618 331 9 8 614 8 603 4.39e-155 459
Msa0030130 MtrunA17_Chr7g0246701 43.704 540 271 12 92 614 102 625 2.95e-149 445
Msa0030130 MtrunA17_Chr8g0388881 42.910 543 275 13 89 614 96 620 7.11e-149 444
Msa0030130 MtrunA17_Chr8g0361791 40.157 635 331 15 5 624 10 610 1.10e-148 443
Msa0030130 MtrunA17_Chr5g0437501 44.821 502 252 9 100 588 101 590 2.78e-148 442
Msa0030130 MtrunA17_Chr5g0416991 39.938 641 336 17 1 624 1 609 1.49e-147 440
Msa0030130 MtrunA17_Chr4g0055031 39.399 632 339 15 2 617 3 606 3.18e-147 439
Msa0030130 MtrunA17_Chr8g0350391 42.802 514 267 9 91 588 105 607 1.29e-145 436
Msa0030130 MtrunA17_Chr3g0130381 41.497 588 301 14 41 614 218 776 2.45e-145 440
Msa0030130 MtrunA17_Chr1g0203741 42.647 544 276 14 90 614 91 617 1.64e-144 433
Msa0030130 MtrunA17_Chr3g0125511 43.289 529 269 12 99 614 232 742 2.53e-144 436
Msa0030130 MtrunA17_Chr6g0472571 41.894 549 285 12 91 623 105 635 3.78e-144 432
Msa0030130 MtrunA17_Chr7g0246681 42.026 533 284 9 89 614 73 587 2.22e-143 429
Msa0030130 MtrunA17_Chr8g0369481 38.523 623 325 11 11 617 11 591 2.54e-143 429
Msa0030130 MtrunA17_Chr8g0384431 43.849 504 256 11 100 589 298 788 4.44e-142 432
Msa0030130 MtrunA17_Chr8g0350351 41.132 530 283 10 94 614 91 600 5.01e-141 423
Msa0030130 MtrunA17_Chr3g0092501 39.002 641 335 17 2 623 3 606 7.83e-141 422
Msa0030130 MtrunA17_Chr3g0113981 43.750 496 259 8 100 590 175 655 5.13e-139 420
Msa0030130 MtrunA17_Chr7g0214551 43.536 526 268 13 91 598 43 557 6.94e-139 416
Msa0030130 MtrunA17_Chr5g0409411 37.760 625 332 12 10 619 13 595 2.48e-138 416
Msa0030130 MtrunA17_Chr8g0372471 43.126 531 276 12 71 590 358 873 3.36e-138 425
Msa0030130 MtrunA17_Chr5g0426281 34.873 628 354 12 9 614 76 670 2.15e-121 375
Msa0030130 MtrunA17_Chr3g0115931 36.182 550 314 11 89 614 152 688 6.18e-117 363
Msa0030130 MtrunA17_Chr1g0155141 35.472 530 303 11 93 614 201 699 1.17e-103 329
Msa0030130 MtrunA17_Chr5g0404771 50.391 256 111 5 99 353 328 568 1.04e-79 263
Msa0030130 MtrunA17_Chr4g0043121 32.082 293 189 4 89 375 84 372 8.69e-56 195
Msa0030130 MtrunA17_Chr5g0404761 40.996 261 133 9 341 587 1 254 2.13e-55 189
Msa0030130 MtrunA17_Chr4g0043131 46.199 171 74 3 445 597 2 172 1.15e-41 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030130 AT1G04430.1 78.605 631 120 5 1 624 1 623 0.0 1043
Msa0030130 AT1G04430.3 78.605 631 120 5 1 624 1 623 0.0 1043
Msa0030130 AT1G04430.2 78.605 631 120 5 1 624 1 623 0.0 1043
Msa0030130 AT3G23300.2 77.724 624 123 6 3 624 2 611 0.0 1004
Msa0030130 AT3G23300.1 77.724 624 123 6 3 624 2 611 0.0 1004
Msa0030130 AT4G14360.1 78.939 622 116 6 3 624 2 608 0.0 982
Msa0030130 AT4G14360.2 78.939 622 116 6 3 624 2 608 0.0 982
Msa0030130 AT5G14430.1 63.339 581 201 4 42 614 28 604 0.0 766
Msa0030130 AT5G14430.2 62.823 581 204 4 42 614 28 604 0.0 761
Msa0030130 AT2G39750.1 45.558 529 267 8 68 588 154 669 2.92e-167 494
Msa0030130 AT1G77260.1 44.424 547 278 10 60 595 108 639 2.32e-165 488
Msa0030130 AT5G06050.1 44.238 538 263 10 68 588 124 641 2.25e-164 486
Msa0030130 AT3G10200.1 45.403 533 277 8 86 614 66 588 3.32e-161 475
Msa0030130 AT5G04060.1 45.038 524 275 7 93 614 85 597 5.18e-160 472
Msa0030130 AT3G10200.2 47.292 480 241 6 86 561 66 537 9.92e-153 453
Msa0030130 AT2G45750.1 43.853 545 271 11 90 614 86 615 6.83e-152 452
Msa0030130 AT1G33170.1 43.654 520 265 10 85 588 104 611 3.08e-150 448
Msa0030130 AT4G10440.1 43.691 531 267 13 76 588 77 593 9.89e-150 447
Msa0030130 AT5G64030.1 44.821 531 261 11 100 617 308 819 8.90e-148 448
Msa0030130 AT2G34300.2 44.571 525 260 11 102 614 252 757 1.76e-147 446
Msa0030130 AT2G34300.3 44.571 525 260 11 102 614 252 757 1.76e-147 446
Msa0030130 AT2G34300.1 44.571 525 260 11 102 614 252 757 1.76e-147 446
Msa0030130 AT3G51070.1 44.234 529 263 11 99 614 380 889 2.88e-146 446
Msa0030130 AT4G19120.1 39.658 585 318 11 55 623 34 599 2.40e-145 434
Msa0030130 AT4G19120.2 39.658 585 318 11 55 623 34 599 2.40e-145 434
Msa0030130 AT1G26850.2 39.937 636 330 16 4 619 10 613 3.28e-145 434
Msa0030130 AT1G26850.1 39.937 636 330 16 4 619 10 613 3.28e-145 434
Msa0030130 AT1G29470.1 45.143 525 257 12 102 614 252 757 3.44e-145 439
Msa0030130 AT1G29470.2 45.143 525 257 12 102 614 252 757 3.44e-145 439
Msa0030130 AT4G00740.1 38.907 604 327 13 20 614 23 593 9.75e-142 425
Msa0030130 AT4G00740.2 38.907 604 327 13 20 614 23 593 9.75e-142 425
Msa0030130 AT4G00750.1 38.073 633 345 17 3 614 16 622 6.66e-141 424
Msa0030130 AT2G40280.1 44.242 495 252 11 100 588 90 566 2.31e-138 416
Msa0030130 AT3G56080.1 43.434 495 259 10 100 588 114 593 3.23e-136 411
Msa0030130 AT2G43200.2 42.804 535 270 15 91 608 91 606 1.39e-135 410
Msa0030130 AT2G43200.1 42.804 535 270 15 91 608 91 606 1.39e-135 410
Msa0030130 AT1G31850.1 35.601 632 359 12 1 617 1 599 1.65e-135 409
Msa0030130 AT1G31850.2 35.601 632 359 12 1 617 1 599 1.65e-135 409
Msa0030130 AT1G31850.4 35.601 632 359 12 1 617 1 599 1.65e-135 409
Msa0030130 AT1G31850.3 35.601 632 359 12 1 617 1 599 1.65e-135 409
Msa0030130 AT3G51070.2 47.216 449 213 9 99 534 380 817 3.38e-135 416
Msa0030130 AT4G18030.1 41.165 515 273 10 88 588 82 580 6.06e-133 403
Msa0030130 AT3G56080.2 44.789 451 229 9 100 544 114 550 2.74e-127 386
Msa0030130 AT4G19120.3 39.706 476 265 6 55 518 34 499 1.20e-118 362
Msa0030130 AT1G78240.1 35.165 546 318 10 89 611 144 676 6.03e-117 364
Msa0030130 AT1G78240.2 35.165 546 318 10 89 611 144 676 6.03e-117 364
Msa0030130 AT1G13860.4 34.229 558 298 12 89 613 79 600 1.72e-109 342
Msa0030130 AT1G13860.3 34.229 558 298 12 89 613 79 600 1.72e-109 342
Msa0030130 AT1G13860.1 34.229 558 298 12 89 613 79 600 1.72e-109 342
Msa0030130 AT1G13860.5 34.229 558 298 12 89 613 79 600 1.72e-109 342
Msa0030130 AT1G26850.3 38.867 512 266 13 4 496 10 493 2.27e-109 338
Msa0030130 AT1G19430.1 37.453 534 294 13 90 614 220 722 7.82e-106 336
Msa0030130 AT1G19430.3 37.453 534 294 13 90 614 220 722 7.82e-106 336
Msa0030130 AT2G03480.2 35.821 536 280 12 89 597 84 582 1.86e-104 328
Msa0030130 AT2G03480.1 34.791 549 301 13 89 611 84 601 6.51e-99 315
Msa0030130 AT1G13860.2 35.914 465 247 10 179 613 1 444 1.18e-95 301
Msa0030130 AT1G19430.2 34.250 400 230 11 90 480 220 595 3.72e-61 214
Msa0030130 AT2G03480.3 33.333 285 175 4 89 364 84 362 3.79e-55 194

Find 179 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTCTGATTTGAATTAT+TGG 0.158327 1_1:-56110436 Msa0030130:five_prime_UTR
GAAACTCGGGTCATCATATT+TGG 0.159182 1_1:-56110141 Msa0030130:CDS
CCTCCTAGATTAGCTGATTT+TGG 0.165968 1_1:-56107073 Msa0030130:CDS
TCAAGTTATTATTAAGAAAT+AGG 0.196879 1_1:-56105851 Msa0030130:three_prime_UTR
CTATCAACTGCGGATGAAAT+TGG 0.231856 1_1:-56109542 Msa0030130:CDS
ATGAATCTTCATCAAGTTTC+GGG 0.251904 1_1:-56110088 Msa0030130:CDS
CGATACAATAAGGAATATTA+TGG 0.266438 1_1:-56106823 Msa0030130:CDS
TTGTACTATTCTGTTTAGTA+TGG 0.274573 1_1:-56105640 Msa0030130:three_prime_UTR
TGCGACGTTCAGTTGGGTTT+TGG 0.276747 1_1:-56110410 Msa0030130:five_prime_UTR
AACCGACAGTGTGAAATTTA+AGG 0.283990 1_1:+56111497 None:intergenic
AGATCCAAATTCCAATTAAA+AGG 0.294461 1_1:+56110349 None:intergenic
AAATAGGCATCACGCTTTAT+AGG 0.297432 1_1:-56105835 Msa0030130:three_prime_UTR
TTCCTCTTTCGAGGGCAAAT+TGG 0.300813 1_1:+56107904 None:intergenic
TAGAATATGGCAAATCATTA+AGG 0.302605 1_1:-56110163 Msa0030130:CDS
AGACTTACAGGGAAACTCTT+TGG 0.313437 1_1:+56110038 None:intergenic
TCATCCTGAGCATATGCTTC+TGG 0.327211 1_1:+56107711 None:intergenic
ATCTTGTGGTACAGGAACTA+TGG 0.329209 1_1:-56106896 Msa0030130:intron
GGTTCATCTGCTCTAGAATA+TGG 0.329914 1_1:-56110176 Msa0030130:CDS
ATGAAGAGAATCTAAGGATA+TGG 0.338817 1_1:-56107692 Msa0030130:CDS
GGCTAACTAGTGGAAGCTTC+AGG 0.341074 1_1:-56106056 Msa0030130:CDS
GGCTGTGGTGTTGCAAGTTT+CGG 0.342008 1_1:-56107996 Msa0030130:CDS
GATGAATCTTCATCAAGTTT+CGG 0.344747 1_1:-56110089 Msa0030130:CDS
TTCGGGTTCTGACTCTGTTC+AGG 0.348361 1_1:-56106118 Msa0030130:CDS
AGCAGTTGCAACCGCAGATT+CGG 0.348674 1_1:-56106136 Msa0030130:CDS
AAAGCTAACATGGGTTCATT+TGG 0.352385 1_1:-56106795 Msa0030130:CDS
AAATCAAATCCGATACAATA+AGG 0.353127 1_1:-56106833 Msa0030130:CDS
GTGTATGGTGGATCCATCTT+TGG 0.355339 1_1:-56110212 Msa0030130:CDS
AAAAGAACCAAACTGTTATC+TGG 0.362259 1_1:-56107620 Msa0030130:CDS
TATATAACTTTAAGTGTGTT+TGG 0.364555 1_1:+56106717 None:intergenic
TGCCCTCGAAAGAGGAATTC+CGG 0.372896 1_1:-56107898 Msa0030130:CDS
ATTGGTTTATTGTATGTGTA+TGG 0.380007 1_1:-56110227 Msa0030130:CDS
CTCAGGATGAAGAGAATCTA+AGG 0.380827 1_1:-56107698 Msa0030130:CDS
GGAGGACTGGTCAATCTTGC+AGG 0.386413 1_1:+56107094 None:intergenic
CAGATTTGGCTCTGAATGTC+TGG 0.392842 1_1:-56110383 Msa0030130:five_prime_UTR
GGTTTAGCTTAGAATCCAAT+TGG 0.393722 1_1:+56111340 None:intergenic
GTTCTCGTTGTCGAATTGAT+TGG 0.395510 1_1:-56107809 Msa0030130:CDS
CTCTTAAAGACAAGGATGTA+TGG 0.398577 1_1:-56106767 Msa0030130:CDS
CCGGCATATCTTGGTGTGTT+GGG 0.409827 1_1:-56107879 Msa0030130:CDS
ATCTCAATCAATAGATCCTC+TGG 0.411086 1_1:+56106255 None:intergenic
GGTGAAAAGATAGCGTTTCC+TGG 0.413514 1_1:-56108926 Msa0030130:CDS
CAGAACTGGATGGTTGAAAA+AGG 0.415347 1_1:-56108947 Msa0030130:CDS
GAGAGAGAGTTGATAAATAC+TGG 0.416336 1_1:-56106872 Msa0030130:CDS
ATCACGGAAGATTACAAAAC+CGG 0.418144 1_1:+56106212 None:intergenic
CATAATATTCCTTATTGTAT+CGG 0.419784 1_1:+56106824 None:intergenic
GCAGTTGCAACCGCAGATTC+GGG 0.422319 1_1:-56106135 Msa0030130:CDS
TTCTTCACGAAATCAATCAT+TGG 0.425949 1_1:+56106183 None:intergenic
AGCTTTACCTTGTATCCTGC+TGG 0.439990 1_1:+56109445 None:intergenic
TAGCCAAAATCAGCTAATCT+AGG 0.446639 1_1:+56107070 None:intergenic
ACCTTGTATCCTGCTGGAGG+TGG 0.447322 1_1:+56109451 None:intergenic
ATCAAGTTTCGGGCAGGTTG+AGG 0.449725 1_1:-56110078 Msa0030130:CDS
TACTACTTCTTGAACTAGAC+CGG 0.450201 1_1:-56107770 Msa0030130:CDS
TGATAAGTACATTGCATCAA+TGG 0.450486 1_1:-56108876 Msa0030130:CDS
AGAGGAATTCCGGCATATCT+TGG 0.451720 1_1:-56107888 Msa0030130:CDS
TTGAACTAGACCGGGTTCTC+AGG 0.456403 1_1:-56107761 Msa0030130:CDS
TTGGTGTTGCGACGTTCAGT+TGG 0.457036 1_1:-56110417 Msa0030130:five_prime_UTR
TCAAAAGATCTGCTTGGGTA+TGG 0.460861 1_1:+56107843 None:intergenic
ATATATGACAGAGGCCTCAT+AGG 0.461279 1_1:-56106699 Msa0030130:CDS
AAATTGAACTCACAACTTTG+CGG 0.466495 1_1:-56111677 Msa0030130:five_prime_UTR
AAGATAGCGTTTCCTGGAGG+TGG 0.467053 1_1:-56108920 Msa0030130:CDS
AAACTCGGGTCATCATATTT+GGG 0.469992 1_1:-56110140 Msa0030130:CDS
TTCAAATGAAATGTTCGAAA+AGG 0.471325 1_1:-56107047 Msa0030130:CDS
CATAGAGGAGGGCGAGTACC+AGG 0.471766 1_1:+56107558 None:intergenic
CAATTGTAGCGCCTTTCTGC+AGG 0.474236 1_1:+56109481 None:intergenic
AACCTCCTGGCCTGAGAACC+CGG 0.474438 1_1:+56107751 None:intergenic
GAGTACTCACGTTCACTGTA+AGG 0.479937 1_1:+56107477 None:intergenic
CAAGTTCAAAAGATCTGCTT+GGG 0.481909 1_1:+56107838 None:intergenic
CATCAGGATCTGCGTCAGAC+TGG 0.485907 1_1:+56107535 None:intergenic
AACAATAATCTAAACAATGA+AGG 0.490397 1_1:-56108044 Msa0030130:CDS
AGTACTTAACTGCTTTGCAC+TGG 0.490999 1_1:-56106161 Msa0030130:CDS
GGTTTATTGTATGTGTATGG+TGG 0.491063 1_1:-56110224 Msa0030130:CDS
GCGATTCCACTTGGAGAAAG+TGG 0.491205 1_1:+56111846 None:intergenic
ATCCAATTTGCCCTCGAAAG+AGG 0.492639 1_1:-56107906 Msa0030130:CDS
CTGGTCAATCTTGCAGGCCA+TGG 0.493398 1_1:+56107100 None:intergenic
GGTTTGTGATGATCGACATT+CGG 0.499002 1_1:-56109596 Msa0030130:CDS
ATTGATTGGCTTCAGAGAGA+TGG 0.500213 1_1:-56107795 Msa0030130:CDS
CACCTTAAATTTCACACTGT+CGG 0.500946 1_1:-56111499 Msa0030130:five_prime_UTR
ATGCCGGAATTCCTCTTTCG+AGG 0.502230 1_1:+56107895 None:intergenic
TGATATCATTACAATGTCCT+TGG 0.502493 1_1:-56107955 Msa0030130:CDS
GGCAAATCATTAAGGAAACT+CGG 0.503496 1_1:-56110155 Msa0030130:CDS
TGGTGTTGCGACGTTCAGTT+GGG 0.506408 1_1:-56110416 Msa0030130:five_prime_UTR
TCATCCGCAGTTGATAGATA+AGG 0.506793 1_1:+56109548 None:intergenic
TTTACCACCGCGATTCCACT+TGG 0.514346 1_1:+56111837 None:intergenic
TCATAGGCGCCACTCATGAC+TGG 0.514718 1_1:-56106683 Msa0030130:intron
TGCTTCCATCTGTGTTGCGA+CGG 0.516462 1_1:-56110255 Msa0030130:CDS
ATGCACATCATTTGGTGCCA+AGG 0.517710 1_1:+56107938 None:intergenic
ATCTTTGGTTCTCAAAGTAG+TGG 0.519421 1_1:-56110197 Msa0030130:CDS
AGCTAATCTAGGAGGAGGAC+TGG 0.521950 1_1:+56107081 None:intergenic
AGTCATGAGTGGCGCCTATG+AGG 0.523143 1_1:+56106685 None:intergenic
TGAAAATGAGTCCCACCTCC+AGG 0.523764 1_1:+56108908 None:intergenic
GCTAACTAGTGGAAGCTTCA+GGG 0.524448 1_1:-56106055 Msa0030130:CDS
TCCGGCATATCTTGGTGTGT+TGG 0.527386 1_1:-56107880 Msa0030130:CDS
TGCTTGATTCCACCTCCAGC+AGG 0.528228 1_1:-56109460 Msa0030130:CDS
CGATTCCACTTGGAGAAAGT+GGG 0.528474 1_1:+56111847 None:intergenic
TCAGATGACAACAAAGCTAA+AGG 0.530234 1_1:-56107136 Msa0030130:intron
ATTATCTGCTATTGCTGCAA+GGG 0.531979 1_1:-56105974 Msa0030130:three_prime_UTR
TCCACCTCCAGCAGGATACA+AGG 0.532112 1_1:-56109452 Msa0030130:intron
ATCTTCATCAAGTTTCGGGC+AGG 0.532250 1_1:-56110084 Msa0030130:CDS
CAATCATTGGCTGTTTATCA+CGG 0.533993 1_1:+56106196 None:intergenic
TATTGCAGGTCCCTGTTAAG+TGG 0.534088 1_1:-56109039 Msa0030130:intron
GTTTAGCTTAGAATCCAATT+GGG 0.535911 1_1:+56111341 None:intergenic
AAGAAATTGTGGCTAACTAG+TGG 0.541752 1_1:-56106066 Msa0030130:CDS
CTAGACCGGGTTCTCAGGCC+AGG 0.542143 1_1:-56107756 Msa0030130:CDS
GCAAGTTCAAAAGATCTGCT+TGG 0.542505 1_1:+56107837 None:intergenic
GACAACAAAGCTAAAGGTAG+TGG 0.545840 1_1:-56107130 Msa0030130:CDS
TATGGATATGAAAGCTAACA+TGG 0.546843 1_1:-56106805 Msa0030130:CDS
AGAGGATCTATTGATTGAGA+TGG 0.548428 1_1:-56106253 Msa0030130:CDS
ACTACTTTGAGAACCAAAGA+TGG 0.550404 1_1:+56110199 None:intergenic
TGCCGGAATTCCTCTTTCGA+GGG 0.551478 1_1:+56107896 None:intergenic
GTCTCCAGAAGCATATGCTC+AGG 0.552689 1_1:-56107715 Msa0030130:CDS
AAGGTAGTGGCTTAGCTCCA+TGG 0.554029 1_1:-56107117 Msa0030130:CDS
CATGTGCAAGGTGAGTATGC+GGG 0.554830 1_1:+56108981 None:intergenic
GTACTTAACTGCTTTGCACT+GGG 0.555902 1_1:-56106160 Msa0030130:CDS
CCCAACACACCAAGATATGC+CGG 0.557514 1_1:+56107879 None:intergenic
TCTTAAAGACAAGGATGTAT+GGG 0.561592 1_1:-56106766 Msa0030130:CDS
TATTATCTGCTATTGCTGCA+AGG 0.565473 1_1:-56105975 Msa0030130:three_prime_UTR
AGTGTGTTTGGTCCATCTTG+AGG 0.566835 1_1:+56106729 None:intergenic
GACATTGTCCTCCTGCAGAA+AGG 0.568006 1_1:-56109492 Msa0030130:CDS
CTTACATAATACCCAAATGC+AGG 0.569944 1_1:+56105794 None:intergenic
TTATAGCAATCATTTGTCAA+AGG 0.570240 1_1:+56107591 None:intergenic
CGGGTCATCATATTTGGGTG+CGG 0.570443 1_1:-56110135 Msa0030130:CDS
TTATCATACAGAAGAAATTG+TGG 0.573042 1_1:-56106077 Msa0030130:CDS
CTTACGACTTACTCCATGCA+TGG 0.577084 1_1:-56106314 Msa0030130:CDS
GCAAATCATTAAGGAAACTC+GGG 0.578611 1_1:-56110154 Msa0030130:CDS
GAAAGAAATGAGTGATCTTG+TGG 0.587132 1_1:-56107670 Msa0030130:CDS
TGTGGTGTTGCAAGTTTCGG+AGG 0.588854 1_1:-56107993 Msa0030130:CDS
GAAATTGGACTTGTCTGTGA+TGG 0.590350 1_1:-56109527 Msa0030130:CDS
TTGCGGACAGTGCTTGATGT+TGG 0.592875 1_1:-56108017 Msa0030130:CDS
ACTACTTCTTGAACTAGACC+GGG 0.593228 1_1:-56107769 Msa0030130:CDS
TTTACCTTGTATCCTGCTGG+AGG 0.594171 1_1:+56109448 None:intergenic
ATGAATGTTGTACCTCAAGA+TGG 0.595874 1_1:-56106741 Msa0030130:CDS
TAATGATATCAGATGCAAGA+AGG 0.596202 1_1:+56107967 None:intergenic
CAGACAAGACAGTCCATGCA+TGG 0.597709 1_1:+56106301 None:intergenic
AAAGAAATGAGTGATCTTGT+GGG 0.597795 1_1:-56107669 Msa0030130:CDS
AAGTTTCGGGCAGGTTGAGG+AGG 0.598476 1_1:-56110075 Msa0030130:CDS
GCGTCAGACTGGCATAGAGG+AGG 0.600761 1_1:+56107546 None:intergenic
TCATGTGCAAGGTGAGTATG+CGG 0.601983 1_1:+56108980 None:intergenic
ATCTTGTGGGGCGTATGTGT+TGG 0.603803 1_1:-56107656 Msa0030130:CDS
TCTGCGTCAGACTGGCATAG+AGG 0.604282 1_1:+56107543 None:intergenic
TTGTAGCGCCTTTCTGCAGG+AGG 0.605032 1_1:+56109484 None:intergenic
AAGCATTCTCAACATACCCT+CGG 0.607953 1_1:-56106338 Msa0030130:CDS
AAATCAGCTAATCTAGGAGG+AGG 0.608894 1_1:+56107076 None:intergenic
ACAGTGCTTGATGTTGGCTG+TGG 0.609589 1_1:-56108011 Msa0030130:CDS
CGTCAGACTGGCATAGAGGA+GGG 0.612841 1_1:+56107547 None:intergenic
GAGTATGCGAAATAACCTCC+TGG 0.612850 1_1:+56107738 None:intergenic
GTGGTGTTGCAAGTTTCGGA+GGG 0.613327 1_1:-56107992 Msa0030130:CDS
AGATAGCGTTTCCTGGAGGT+GGG 0.614943 1_1:-56108919 Msa0030130:CDS
GACCGCGTGCTTAGACCTAC+CGG 0.616375 1_1:-56106231 Msa0030130:CDS
AGTCAGTGTATTGTATTGTG+AGG 0.617658 1_1:-56110466 Msa0030130:five_prime_UTR
TGGAGCTGCTCTTAAAGACA+AGG 0.618325 1_1:-56106775 Msa0030130:CDS
ATAAGGTGTCTATCTAAGCA+AGG 0.619479 1_1:+56109565 None:intergenic
TTTCAGCTAATAAATGTCGA+GGG 0.621039 1_1:-56110312 Msa0030130:exon
TGGAGTAAGTCGTAAGTCCG+AGG 0.621892 1_1:+56106321 None:intergenic
ATAACTAAAATACAAACACT+TGG 0.622410 1_1:-56111441 Msa0030130:five_prime_UTR
CTAGTTCAATAATCAAGACA+TGG 0.624276 1_1:-56105771 Msa0030130:three_prime_UTR
GTTTCAGCTAATAAATGTCG+AGG 0.624315 1_1:-56110313 Msa0030130:exon
GCAAACCCACTTTCTCCAAG+TGG 0.629272 1_1:-56111852 Msa0030130:five_prime_UTR
GGATCAAAGCACTTCTCAAG+TGG 0.637855 1_1:-56105953 Msa0030130:three_prime_UTR
GAAGAAAGATTGCAGTCCAG+AGG 0.639031 1_1:-56106271 Msa0030130:CDS
GGTGCGGATGATGACAATGA+TGG 0.639680 1_1:-56110119 Msa0030130:CDS
CCAAAATCAGCTAATCTAGG+AGG 0.640226 1_1:+56107073 None:intergenic
TTCAGCTAATAAATGTCGAG+GGG 0.645373 1_1:-56110311 Msa0030130:exon
AGAGTCAGAACCCGAATCTG+CGG 0.645931 1_1:+56106125 None:intergenic
ACTTTCTCCAAGTGGAATCG+CGG 0.650721 1_1:-56111844 Msa0030130:five_prime_UTR
GGAGTAAGTCGTAAGTCCGA+GGG 0.656206 1_1:+56106322 None:intergenic
TAAACAATGAAGGAAGATTG+CGG 0.666101 1_1:-56108034 Msa0030130:CDS
CGACAGTGTGAAATTTAAGG+TGG 0.666495 1_1:+56111500 None:intergenic
TGAAATGTTCGAAAAGGACA+CGG 0.667841 1_1:-56107041 Msa0030130:intron
AAAATCTGACCAGAACTGGA+TGG 0.669903 1_1:-56108957 Msa0030130:CDS
CGGAAGATTACAAAACCGGT+AGG 0.669981 1_1:+56106216 None:intergenic
GATTCAATACCAGTCATGAG+TGG 0.672442 1_1:+56106674 None:intergenic
TTCTCCAAGTGGAATCGCGG+TGG 0.673024 1_1:-56111841 Msa0030130:intron
GACCGGGTTCTCAGGCCAGG+AGG 0.684761 1_1:-56107753 Msa0030130:CDS
ATGGATATGAAAGCTAACAT+GGG 0.699127 1_1:-56106804 Msa0030130:CDS
AACCGGTAGGTCTAAGCACG+CGG 0.699582 1_1:+56106229 None:intergenic
CTTAAAGTTATATATGACAG+AGG 0.704000 1_1:-56106708 Msa0030130:CDS
GACACCTTATCTATCAACTG+CGG 0.711012 1_1:-56109552 Msa0030130:CDS
TCAGCTAATAAATGTCGAGG+GGG 0.718230 1_1:-56110310 Msa0030130:exon
AAGAAATGAGTGATCTTGTG+GGG 0.720429 1_1:-56107668 Msa0030130:CDS
GAAAAGATAGCGTTTCCTGG+AGG 0.737306 1_1:-56108923 Msa0030130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAAATCATTAATAAG+AGG + chr1_1:56110474-56110493 None:intergenic 10.0%
!!! TTTTTTTTAGTTTGTTTTAG+TGG - chr1_1:56106231-56106250 Msa0030130:CDS 15.0%
!!! TGATTATAACTTGTTATTAA+TGG - chr1_1:56106346-56106365 Msa0030130:CDS 15.0%
!!! ATAAATCATGTTTCTTTTTA+TGG - chr1_1:56106558-56106577 Msa0030130:intron 15.0%
!!! TAAATCATGTTTCTTTTTAT+GGG - chr1_1:56106559-56106578 Msa0030130:intron 15.0%
!! AAAAAGTTTAAACTAAGATA+AGG + chr1_1:56106883-56106902 None:intergenic 15.0%
!!! ATAATTCTGATTTGAATTAT+TGG - chr1_1:56107032-56107051 Msa0030130:intron 15.0%
!! TGCTTAAAATTAAATGTAAA+TGG - chr1_1:56107638-56107657 Msa0030130:CDS 15.0%
!! AAAAATGAAATAGTGATAAA+AGG + chr1_1:56108952-56108971 None:intergenic 15.0%
!!! TTTATCACTATTTCATTTTT+TGG - chr1_1:56108952-56108971 Msa0030130:CDS 15.0%
!!! TAATTAAAGATTCTTTTTAG+AGG - chr1_1:56110239-56110258 Msa0030130:CDS 15.0%
!! TAAAAAAAATGAAAATGCAA+TGG + chr1_1:56111470-56111489 None:intergenic 15.0%
!! TCAAGTTATTATTAAGAAAT+AGG - chr1_1:56111617-56111636 Msa0030130:intron 15.0%
!!! TTTTGAGTAAAAGTTTTTTG+TGG + chr1_1:56105773-56105792 None:intergenic 20.0%
!! ATAACTAAAATACAAACACT+TGG - chr1_1:56106027-56106046 Msa0030130:exon 20.0%
!!! TATTGTTTTGCATTGTTTTT+TGG - chr1_1:56106173-56106192 Msa0030130:CDS 20.0%
!!! ATTGTTTTGCATTGTTTTTT+GGG - chr1_1:56106174-56106193 Msa0030130:CDS 20.0%
!! TTTATTGTTAACATGATTCA+TGG - chr1_1:56106451-56106470 Msa0030130:intron 20.0%
!! ATAATTCAGGAAATCAAAAT+TGG + chr1_1:56106500-56106519 None:intergenic 20.0%
!!! AAATCATGTTTCTTTTTATG+GGG - chr1_1:56106560-56106579 Msa0030130:intron 20.0%
!!! AAGTTTTTAACCAAATACTT+TGG + chr1_1:56106709-56106728 None:intergenic 20.0%
!!! CTATTTTTGCTTTTGATATT+TGG - chr1_1:56107485-56107504 Msa0030130:intron 20.0%
!!! TATAATGTTTCTTCTTTTGA+AGG - chr1_1:56107851-56107870 Msa0030130:CDS 20.0%
!! AAGATTAAAAATTGATCCAA+GGG + chr1_1:56108119-56108138 None:intergenic 20.0%
!! TAAGATTAAAAATTGATCCA+AGG + chr1_1:56108120-56108139 None:intergenic 20.0%
!! TTGTTAGAATAAATAGAAGT+TGG - chr1_1:56108237-56108256 Msa0030130:intron 20.0%
!! AAATAATACATATGTATCAG+AGG + chr1_1:56108383-56108402 None:intergenic 20.0%
!!! TATGTATTATTTTGAACTTC+TGG + chr1_1:56108778-56108797 None:intergenic 20.0%
!!! TTCTGTTTTTAGTACATTAA+CGG - chr1_1:56108798-56108817 Msa0030130:intron 20.0%
!! AATAGTGATAAAAGGAAAAA+GGG + chr1_1:56108944-56108963 None:intergenic 20.0%
!! AAATAGTGATAAAAGGAAAA+AGG + chr1_1:56108945-56108964 None:intergenic 20.0%
!!! TTTTATGTATTCTGTTTATC+TGG - chr1_1:56109322-56109341 Msa0030130:intron 20.0%
!! AACAATAATCTAAACAATGA+AGG - chr1_1:56109424-56109443 Msa0030130:intron 20.0%
!!! TTTTTCTCTTTGTTATTTGT+TGG - chr1_1:56110015-56110034 Msa0030130:intron 20.0%
!!! TTTCTCTATAATTTCCTTTT+AGG - chr1_1:56110071-56110090 Msa0030130:CDS 20.0%
!! TATGTATTCTATGATTTCTA+TGG - chr1_1:56110110-56110129 Msa0030130:CDS 20.0%
!!! GCTTGTTATTTATAACATAA+AGG + chr1_1:56110270-56110289 None:intergenic 20.0%
!! CATAATATTCCTTATTGTAT+CGG + chr1_1:56110647-56110666 None:intergenic 20.0%
!! TATATAACTTTAAGTGTGTT+TGG + chr1_1:56110754-56110773 None:intergenic 20.0%
!!! AACTTCTAATTTTAGTAAAC+AGG + chr1_1:56110819-56110838 None:intergenic 20.0%
!! TATAAAATGTTGTCAAATAG+CGG + chr1_1:56110938-56110957 None:intergenic 20.0%
! AATTAGAGAAAAAGCTTACT+GGG + chr1_1:56106152-56106171 None:intergenic 25.0%
!!! ATTGTTTTTTGGGATTGTAA+TGG - chr1_1:56106184-56106203 Msa0030130:CDS 25.0%
!!! ATCTGAAACATTTTACTATG+TGG - chr1_1:56106207-56106226 Msa0030130:CDS 25.0%
! CCTTAGCAAAAATATAATTC+AGG + chr1_1:56106513-56106532 None:intergenic 25.0%
!!! CCTGAATTATATTTTTGCTA+AGG - chr1_1:56106510-56106529 Msa0030130:intron 25.0%
! TAAAAACCAAGTCAAAATGA+TGG + chr1_1:56106601-56106620 None:intergenic 25.0%
! TTGGATAAAGAAGTTTGAAT+TGG - chr1_1:56106836-56106855 Msa0030130:CDS 25.0%
!!! TTTGAATTGGTCTCTTTTTT+TGG - chr1_1:56106849-56106868 Msa0030130:CDS 25.0%
! GAAACAATAATCAGCAAATT+CGG + chr1_1:56106956-56106975 None:intergenic 25.0%
! TAATGATTAACCTGCAATTA+AGG + chr1_1:56106982-56107001 None:intergenic 25.0%
!!! AGATCCTTTTAATTGGAATT+TGG - chr1_1:56107115-56107134 Msa0030130:CDS 25.0%
! AGATCCAAATTCCAATTAAA+AGG + chr1_1:56107122-56107141 None:intergenic 25.0%
!! ATTGGTTTATTGTATGTGTA+TGG - chr1_1:56107241-56107260 Msa0030130:intron 25.0%
! TAGAATATGGCAAATCATTA+AGG - chr1_1:56107305-56107324 Msa0030130:intron 25.0%
! TATCAAAAGCAAAAATAGAG+TGG + chr1_1:56107483-56107502 None:intergenic 25.0%
!! ACTGATTTAGTTACTATATG+TGG + chr1_1:56107698-56107717 None:intergenic 25.0%
! ATTGTTTCCTGTATAATAAG+TGG - chr1_1:56107755-56107774 Msa0030130:CDS 25.0%
! AGATTAAAAATTGATCCAAG+GGG + chr1_1:56108118-56108137 None:intergenic 25.0%
! GAAATATGTAAACTAATCCT+AGG + chr1_1:56108161-56108180 None:intergenic 25.0%
! GTTCCTATTTATTCAAGATT+AGG - chr1_1:56108210-56108229 Msa0030130:intron 25.0%
! ACTCCTAATCTTGAATAAAT+AGG + chr1_1:56108216-56108235 None:intergenic 25.0%
!!! AGTTATGGGTTTTAGTTAAA+AGG + chr1_1:56108335-56108354 None:intergenic 25.0%
!! ATCACATTTGTTGAAGTTAT+GGG + chr1_1:56108349-56108368 None:intergenic 25.0%
!! AATCACATTTGTTGAAGTTA+TGG + chr1_1:56108350-56108369 None:intergenic 25.0%
!!! ACATTTTCATTTGAAGTAGA+AGG + chr1_1:56108725-56108744 None:intergenic 25.0%
!! AGTTTTCCATTTTCATTTGA+TGG - chr1_1:56108751-56108770 Msa0030130:intron 25.0%
!! TACATGATTTGAAGTGTATT+TGG - chr1_1:56108825-56108844 Msa0030130:intron 25.0%
! TATATTATGCTACTAAGGTA+TGG + chr1_1:56109104-56109123 None:intergenic 25.0%
! ATGTCTAGTAATTATGAATC+AGG + chr1_1:56109127-56109146 None:intergenic 25.0%
! TTATAGCAATCATTTGTCAA+AGG + chr1_1:56109880-56109899 None:intergenic 25.0%
!! TTTTGTATTCTATTGCTCAT+AGG - chr1_1:56110040-56110059 Msa0030130:intron 25.0%
! TTTGTATTCTATTGCTCATA+GGG - chr1_1:56110041-56110060 Msa0030130:intron 25.0%
! TAATAAATCTTTAGCCAGAA+TGG + chr1_1:56110137-56110156 None:intergenic 25.0%
! GCTAAAGATTTATTATCCTT+TGG - chr1_1:56110142-56110161 Msa0030130:CDS 25.0%
! CATTTAATACTCAATTCTCA+GGG + chr1_1:56110209-56110228 None:intergenic 25.0%
! TTGCATACTGAAATTTATGT+TGG - chr1_1:56110303-56110322 Msa0030130:exon 25.0%
! TTCAAATGAAATGTTCGAAA+AGG - chr1_1:56110421-56110440 Msa0030130:five_prime_UTR 25.0%
! AAATCAAATCCGATACAATA+AGG - chr1_1:56110635-56110654 Msa0030130:intron 25.0%
! CGATACAATAAGGAATATTA+TGG - chr1_1:56110645-56110664 Msa0030130:intron 25.0%
! CTTAAAGTTATATATGACAG+AGG - chr1_1:56110760-56110779 Msa0030130:intron 25.0%
!! TGATTTGCAATTGACAATAT+TGG + chr1_1:56110860-56110879 None:intergenic 25.0%
! TTATCATACAGAAGAAATTG+TGG - chr1_1:56111391-56111410 Msa0030130:five_prime_UTR 25.0%
! CAAAAATGAGAATCAAAAGA+AGG + chr1_1:56111587-56111606 None:intergenic 25.0%
!!! TCTTTTGATTCTCATTTTTG+AGG - chr1_1:56111587-56111606 Msa0030130:intron 25.0%
! TTGTACTATTCTGTTTAGTA+TGG - chr1_1:56111828-56111847 Msa0030130:intron 25.0%
!!! TTACTTTTTTTTCCTCGAGA+CGG - chr1_1:56105668-56105687 Msa0030130:three_prime_UTR 30.0%
AAATTGAACTCACAACTTTG+CGG - chr1_1:56105791-56105810 Msa0030130:three_prime_UTR 30.0%
! GATTAAGGTAGCAACTTTTA+TGG + chr1_1:56105889-56105908 None:intergenic 30.0%
!! TTGTTTTTCTTTGACCCAAT+TGG - chr1_1:56106113-56106132 Msa0030130:CDS 30.0%
! GTTTAGCTTAGAATCCAATT+GGG + chr1_1:56106130-56106149 None:intergenic 30.0%
GAATTAGAGAAAAAGCTTAC+TGG + chr1_1:56106153-56106172 None:intergenic 30.0%
! GTTCTTGTTGTGAATTATGA+TGG - chr1_1:56106253-56106272 Msa0030130:CDS 30.0%
CATTCAATTCAATACATCAG+TGG + chr1_1:56106285-56106304 None:intergenic 30.0%
! AACAACACTAGCATTGAAAA+AGG + chr1_1:56106378-56106397 None:intergenic 30.0%
! GGTAGTTCTGTTTAATTGTA+TGG - chr1_1:56106416-56106435 Msa0030130:intron 30.0%
GAAATCAAAATTGGCAATTG+AGG + chr1_1:56106491-56106510 None:intergenic 30.0%
! TTTCTTTTTATGGGGTGATT+TGG - chr1_1:56106568-56106587 Msa0030130:intron 30.0%
! TTGTATTATTTTCCCTCCTA+TGG - chr1_1:56106673-56106692 Msa0030130:intron 30.0%
GAAATGAATGAAGAATCTTG+TGG - chr1_1:56106729-56106748 Msa0030130:CDS 30.0%
AATGACTTTAGTTACACTCT+AGG - chr1_1:56106785-56106804 Msa0030130:CDS 30.0%
CTTCTTTATCCAATGCAAAT+TGG + chr1_1:56106829-56106848 None:intergenic 30.0%
AACGTTTAATAAAGATCTGC+AGG - chr1_1:56106912-56106931 Msa0030130:intron 30.0%
! TCAAGCAAGATCCTTTTAAT+TGG - chr1_1:56107108-56107127 Msa0030130:CDS 30.0%
TTTCAGCTAATAAATGTCGA+GGG - chr1_1:56107156-56107175 Msa0030130:intron 30.0%
GATGAATCTTCATCAAGTTT+CGG - chr1_1:56107379-56107398 Msa0030130:intron 30.0%
ATGAATCTTCATCAAGTTTC+GGG - chr1_1:56107380-56107399 Msa0030130:intron 30.0%
ATCTTACAAAGAGACTTACA+GGG + chr1_1:56107444-56107463 None:intergenic 30.0%
AATCTTACAAAGAGACTTAC+AGG + chr1_1:56107445-56107464 None:intergenic 30.0%
!!! GTAGAGTTTTGTTCAATTTC+AGG - chr1_1:56107551-56107570 Msa0030130:CDS 30.0%
! TTCAGATGCAGCAATATTTT+TGG - chr1_1:56107802-56107821 Msa0030130:CDS 30.0%
!!! TATGGGTTTTAGTTAAAAGG+AGG + chr1_1:56108332-56108351 None:intergenic 30.0%
TGATAAGTACATTGCATCAA+TGG - chr1_1:56108592-56108611 Msa0030130:intron 30.0%
ATGTCTGAAAACATTCTCAA+GGG + chr1_1:56108653-56108672 None:intergenic 30.0%
! TTGAGAATGTTTTCAGACAT+GGG - chr1_1:56108653-56108672 Msa0030130:intron 30.0%
TGAAGTAGAAGGAATATGTA+CGG + chr1_1:56108714-56108733 None:intergenic 30.0%
TACAGTGGCGATAAAATATA+AGG + chr1_1:56108895-56108914 None:intergenic 30.0%
AAATGACATAGTTAGATGTG+AGG + chr1_1:56108993-56109012 None:intergenic 30.0%
TCAGGTATATTATGCTACTA+AGG + chr1_1:56109109-56109128 None:intergenic 30.0%
TATGAACAAGCAAAATGCAT+AGG + chr1_1:56109178-56109197 None:intergenic 30.0%
GAGTCATTATCATATCATGT+TGG - chr1_1:56109286-56109305 Msa0030130:intron 30.0%
TAAACAATGAAGGAAGATTG+CGG - chr1_1:56109434-56109453 Msa0030130:intron 30.0%
TAATGATATCAGATGCAAGA+AGG + chr1_1:56109504-56109523 None:intergenic 30.0%
TGATATCATTACAATGTCCT+TGG - chr1_1:56109513-56109532 Msa0030130:CDS 30.0%
!! TGATTTTGATGCACATCATT+TGG + chr1_1:56109541-56109560 None:intergenic 30.0%
ATGAAGAGAATCTAAGGATA+TGG - chr1_1:56109776-56109795 Msa0030130:intron 30.0%
AAAGAAATGAGTGATCTTGT+GGG - chr1_1:56109799-56109818 Msa0030130:intron 30.0%
AAAAGAACCAAACTGTTATC+TGG - chr1_1:56109848-56109867 Msa0030130:intron 30.0%
TGCTATAAAAAAAGAGAACC+TGG - chr1_1:56109892-56109911 Msa0030130:intron 30.0%
!!! TGCAGTTTTTGGAGTAAATA+TGG - chr1_1:56109954-56109973 Msa0030130:intron 30.0%
TTGTATTCTATTGCTCATAG+GGG - chr1_1:56110042-56110061 Msa0030130:intron 30.0%
CATTGACAGATAAACCTAAA+AGG + chr1_1:56110088-56110107 None:intergenic 30.0%
CCATTTAATACTCAATTCTC+AGG + chr1_1:56110210-56110229 None:intergenic 30.0%
CCTGAGAATTGAGTATTAAA+TGG - chr1_1:56110207-56110226 Msa0030130:CDS 30.0%
AGTATGCAAGTTTCAAATCA+CGG + chr1_1:56110292-56110311 None:intergenic 30.0%
ATAAAATGTAAGCCAACAGT+TGG + chr1_1:56110554-56110573 None:intergenic 30.0%
! TTGGCTTACATTTTATCTTG+TGG - chr1_1:56110558-56110577 Msa0030130:intron 30.0%
! TACATTTTATCTTGTGGTAC+AGG - chr1_1:56110564-56110583 Msa0030130:intron 30.0%
TATGGATATGAAAGCTAACA+TGG - chr1_1:56110663-56110682 Msa0030130:intron 30.0%
ATGGATATGAAAGCTAACAT+GGG - chr1_1:56110664-56110683 Msa0030130:intron 30.0%
TCTTAAAGACAAGGATGTAT+GGG - chr1_1:56110702-56110721 Msa0030130:intron 30.0%
TGCAATTGACAATATTGGAA+TGG + chr1_1:56110855-56110874 None:intergenic 30.0%
TTCTTCACGAAATCAATCAT+TGG + chr1_1:56111288-56111307 None:intergenic 30.0%
CTAGTTCAATAATCAAGACA+TGG - chr1_1:56111697-56111716 Msa0030130:five_prime_UTR 30.0%
AAAGTTGCTACCTTAATCAC+AGG - chr1_1:56105891-56105910 Msa0030130:three_prime_UTR 35.0%
AGCAAATTGACCTGTGATTA+AGG + chr1_1:56105904-56105923 None:intergenic 35.0%
! AACTGTTGCTACACACTTTT+AGG - chr1_1:56105933-56105952 Msa0030130:three_prime_UTR 35.0%
CACCTTAAATTTCACACTGT+CGG - chr1_1:56105969-56105988 Msa0030130:three_prime_UTR 35.0%
AACCGACAGTGTGAAATTTA+AGG + chr1_1:56105974-56105993 None:intergenic 35.0%
! GGTTTAGCTTAGAATCCAAT+TGG + chr1_1:56106131-56106150 None:intergenic 35.0%
! GTTTTCCATTATGCTAGATC+TGG - chr1_1:56106395-56106414 Msa0030130:intron 35.0%
AACTACCAGATCTAGCATAA+TGG + chr1_1:56106403-56106422 None:intergenic 35.0%
!! TTTTATGGGGTGATTTGGAT+TGG - chr1_1:56106573-56106592 Msa0030130:intron 35.0%
!!! TTGGATCCATCATTTTGACT+TGG - chr1_1:56106592-56106611 Msa0030130:intron 35.0%
GTTAGATCACCAATTTGCAT+TGG - chr1_1:56106817-56106836 Msa0030130:CDS 35.0%
TTGTTTCCTTCCTTAATTGC+AGG - chr1_1:56106969-56106988 Msa0030130:intron 35.0%
GATTAACCTGCAATTAAGGA+AGG + chr1_1:56106978-56106997 None:intergenic 35.0%
AGTCAGTGTATTGTATTGTG+AGG - chr1_1:56107002-56107021 Msa0030130:intron 35.0%
GTTTCAGCTAATAAATGTCG+AGG - chr1_1:56107155-56107174 Msa0030130:intron 35.0%
TTCAGCTAATAAATGTCGAG+GGG - chr1_1:56107157-56107176 Msa0030130:intron 35.0%
GGTTTATTGTATGTGTATGG+TGG - chr1_1:56107244-56107263 Msa0030130:intron 35.0%
! ACTACTTTGAGAACCAAAGA+TGG + chr1_1:56107272-56107291 None:intergenic 35.0%
!! ATCTTTGGTTCTCAAAGTAG+TGG - chr1_1:56107271-56107290 Msa0030130:intron 35.0%
GGCAAATCATTAAGGAAACT+CGG - chr1_1:56107313-56107332 Msa0030130:intron 35.0%
GCAAATCATTAAGGAAACTC+GGG - chr1_1:56107314-56107333 Msa0030130:intron 35.0%
AAACTCGGGTCATCATATTT+GGG - chr1_1:56107328-56107347 Msa0030130:intron 35.0%
! TCTTTGTAAGATTAGCCACA+AGG - chr1_1:56107452-56107471 Msa0030130:intron 35.0%
AAAACTCTACACAAGAGACT+TGG + chr1_1:56107541-56107560 None:intergenic 35.0%
AACTATTGTACACATGAGCT+TGG + chr1_1:56107580-56107599 None:intergenic 35.0%
ATTGTGGCCACTTATTATAC+AGG + chr1_1:56107765-56107784 None:intergenic 35.0%
GATGTGCATAAACTTGATTG+TGG + chr1_1:56107781-56107800 None:intergenic 35.0%
! ATAAGGTGTCTATCTAAGCA+AGG + chr1_1:56107906-56107925 None:intergenic 35.0%
CTTCTAACAACATCAACTCT+TGG + chr1_1:56108052-56108071 None:intergenic 35.0%
AATTTCTAAGCTTATCCCCT+TGG - chr1_1:56108100-56108119 Msa0030130:intron 35.0%
ATGAAAAATCTGACCAGAAC+TGG - chr1_1:56108507-56108526 Msa0030130:intron 35.0%
CATGTCTGAAAACATTCTCA+AGG + chr1_1:56108654-56108673 None:intergenic 35.0%
! CTTGAGAATGTTTTCAGACA+TGG - chr1_1:56108652-56108671 Msa0030130:intron 35.0%
TCTGGACCATCAAATGAAAA+TGG + chr1_1:56108760-56108779 None:intergenic 35.0%
TAGGAGAGAAACAAATACAG+TGG + chr1_1:56108910-56108929 None:intergenic 35.0%
AAAAAGGGAGGAGAAAGAAT+AGG + chr1_1:56108929-56108948 None:intergenic 35.0%
AGTGATAAAAGGAAAAAGGG+AGG + chr1_1:56108941-56108960 None:intergenic 35.0%
TAGAAGCTTAAGCTACAAGA+TGG + chr1_1:56109070-56109089 None:intergenic 35.0%
! TTTTGCTTGTTCATACTACG+AGG - chr1_1:56109183-56109202 Msa0030130:intron 35.0%
TTTGCTTGTTCATACTACGA+GGG - chr1_1:56109184-56109203 Msa0030130:intron 35.0%
!! GAAATGCTTGAGGTATTGAA+TGG + chr1_1:56109221-56109240 None:intergenic 35.0%
ACAACATTTCGAAATGCTTG+AGG + chr1_1:56109231-56109250 None:intergenic 35.0%
TGTCCTCGAAGATTTAGATA+TGG - chr1_1:56109248-56109267 Msa0030130:intron 35.0%
TGACCATATCTAAATCTTCG+AGG + chr1_1:56109254-56109273 None:intergenic 35.0%
TGTTCGAAAAGTTAAGCATC+TGG + chr1_1:56109408-56109427 None:intergenic 35.0%
CAAGTTCAAAAGATCTGCTT+GGG + chr1_1:56109633-56109652 None:intergenic 35.0%
TACTACTTCTTGAACTAGAC+CGG - chr1_1:56109698-56109717 Msa0030130:intron 35.0%
GAAAGAAATGAGTGATCTTG+TGG - chr1_1:56109798-56109817 Msa0030130:intron 35.0%
AAGAAATGAGTGATCTTGTG+GGG - chr1_1:56109800-56109819 Msa0030130:intron 35.0%
! GTTTTTGCCAGATAACAGTT+TGG + chr1_1:56109858-56109877 None:intergenic 35.0%
TTTACTCCAAAAACTGCATC+AGG + chr1_1:56109952-56109971 None:intergenic 35.0%
TGTATTCTATTGCTCATAGG+GGG - chr1_1:56110043-56110062 Msa0030130:intron 35.0%
ATGATTTCTATGGTCCATTC+TGG - chr1_1:56110120-56110139 Msa0030130:CDS 35.0%
TTATTATCCTTTGGCTGCAA+TGG - chr1_1:56110151-56110170 Msa0030130:CDS 35.0%
! GGATTGTTTGATTTCCATGA+AGG - chr1_1:56110172-56110191 Msa0030130:CDS 35.0%
TCAGATGACAACAAAGCTAA+AGG - chr1_1:56110332-56110351 Msa0030130:five_prime_UTR 35.0%
TAGCCAAAATCAGCTAATCT+AGG + chr1_1:56110401-56110420 None:intergenic 35.0%
TGAAATGTTCGAAAAGGACA+CGG - chr1_1:56110427-56110446 Msa0030130:five_prime_UTR 35.0%
CATTTAGCTAAACCAACTGT+TGG - chr1_1:56110539-56110558 Msa0030130:intron 35.0%
!! GAGAGAGAGTTGATAAATAC+TGG - chr1_1:56110596-56110615 Msa0030130:intron 35.0%
AAAGCTAACATGGGTTCATT+TGG - chr1_1:56110673-56110692 Msa0030130:intron 35.0%
CTCTTAAAGACAAGGATGTA+TGG - chr1_1:56110701-56110720 Msa0030130:intron 35.0%
ATGAATGTTGTACCTCAAGA+TGG - chr1_1:56110727-56110746 Msa0030130:intron 35.0%
! TTTCTGCTGTCAGTTTTTGT+TGG - chr1_1:56111032-56111051 Msa0030130:intron 35.0%
ATCTCAATCAATAGATCCTC+TGG + chr1_1:56111216-56111235 None:intergenic 35.0%
! AGAGGATCTATTGATTGAGA+TGG - chr1_1:56111215-56111234 Msa0030130:intron 35.0%
ATCACGGAAGATTACAAAAC+CGG + chr1_1:56111259-56111278 None:intergenic 35.0%
! CAATCATTGGCTGTTTATCA+CGG + chr1_1:56111275-56111294 None:intergenic 35.0%
AAGAAATTGTGGCTAACTAG+TGG - chr1_1:56111402-56111421 Msa0030130:five_prime_UTR 35.0%
TATTATCTGCTATTGCTGCA+AGG - chr1_1:56111493-56111512 Msa0030130:five_prime_UTR 35.0%
ATTATCTGCTATTGCTGCAA+GGG - chr1_1:56111494-56111513 Msa0030130:five_prime_UTR 35.0%
AAATAGGCATCACGCTTTAT+AGG - chr1_1:56111633-56111652 Msa0030130:intron 35.0%
! AAAATTTTGCTGCCTGCATT+TGG - chr1_1:56111662-56111681 Msa0030130:five_prime_UTR 35.0%
! AAATTTTGCTGCCTGCATTT+GGG - chr1_1:56111663-56111682 Msa0030130:five_prime_UTR 35.0%
CTTACATAATACCCAAATGC+AGG + chr1_1:56111677-56111696 None:intergenic 35.0%
!! GTTGCTACACACTTTTAGGT+TGG - chr1_1:56105937-56105956 Msa0030130:three_prime_UTR 40.0%
CGACAGTGTGAAATTTAAGG+TGG + chr1_1:56105971-56105990 None:intergenic 40.0%
! AGTGTCTGGTCCAAAGTATT+TGG - chr1_1:56106696-56106715 Msa0030130:CDS 40.0%
!!! TGGGTTTTGGATTGCAGATT+TGG - chr1_1:56107071-56107090 Msa0030130:CDS 40.0%
TCAGCTAATAAATGTCGAGG+GGG - chr1_1:56107158-56107177 Msa0030130:intron 40.0%
! TGTGTTGCGACGGTTTTTAT+TGG - chr1_1:56107223-56107242 Msa0030130:intron 40.0%
!! GGTTCATCTGCTCTAGAATA+TGG - chr1_1:56107292-56107311 Msa0030130:intron 40.0%
GAAACTCGGGTCATCATATT+TGG - chr1_1:56107327-56107346 Msa0030130:intron 40.0%
AGACTTACAGGGAAACTCTT+TGG + chr1_1:56107433-56107452 None:intergenic 40.0%
AATAGAGTGGATGTTCCTTG+TGG + chr1_1:56107470-56107489 None:intergenic 40.0%
GGTTTGTGATGATCGACATT+CGG - chr1_1:56107872-56107891 Msa0030130:CDS 40.0%
GACACCTTATCTATCAACTG+CGG - chr1_1:56107916-56107935 Msa0030130:CDS 40.0%
!! TCATCCGCAGTTGATAGATA+AGG + chr1_1:56107923-56107942 None:intergenic 40.0%
CTATCAACTGCGGATGAAAT+TGG - chr1_1:56107926-56107945 Msa0030130:CDS 40.0%
GAAATTGGACTTGTCTGTGA+TGG - chr1_1:56107941-56107960 Msa0030130:CDS 40.0%
AGCATCTCAGATTATCTCCT+AGG - chr1_1:56108141-56108160 Msa0030130:intron 40.0%
ATTAGGACATGGCAAATGCT+CGG + chr1_1:56108410-56108429 None:intergenic 40.0%
TTGCCATGTCCTAATATTGC+AGG - chr1_1:56108415-56108434 Msa0030130:intron 40.0%
TAACAGGGACCTGCAATATT+AGG + chr1_1:56108427-56108446 None:intergenic 40.0%
!! TGCTTTTTGGCCACTTAACA+GGG + chr1_1:56108442-56108461 None:intergenic 40.0%
! GGTCAGATTTTTCATGTGCA+AGG + chr1_1:56108502-56108521 None:intergenic 40.0%
AAAATCTGACCAGAACTGGA+TGG - chr1_1:56108511-56108530 Msa0030130:intron 40.0%
!!! CTTTTTCAACCATCCAGTTC+TGG + chr1_1:56108523-56108542 None:intergenic 40.0%
CAGAACTGGATGGTTGAAAA+AGG - chr1_1:56108521-56108540 Msa0030130:intron 40.0%
! GGTGGGACTCATTTTCATTA+TGG - chr1_1:56108566-56108585 Msa0030130:intron 40.0%
CATATCATGTTGGACAATGC+TGG - chr1_1:56109296-56109315 Msa0030130:intron 40.0%
! CTGGATTTGCTTGCATTTCA+TGG - chr1_1:56109341-56109360 Msa0030130:intron 40.0%
TGGCAATGCAAAGTTGAAAC+TGG + chr1_1:56109388-56109407 None:intergenic 40.0%
TCAAAAGATCTGCTTGGGTA+TGG + chr1_1:56109628-56109647 None:intergenic 40.0%
GCAAGTTCAAAAGATCTGCT+TGG + chr1_1:56109634-56109653 None:intergenic 40.0%
GTTCTCGTTGTCGAATTGAT+TGG - chr1_1:56109659-56109678 Msa0030130:intron 40.0%
!! ATTGATTGGCTTCAGAGAGA+TGG - chr1_1:56109673-56109692 Msa0030130:intron 40.0%
ACTACTTCTTGAACTAGACC+GGG - chr1_1:56109699-56109718 Msa0030130:intron 40.0%
CTCAGGATGAAGAGAATCTA+AGG - chr1_1:56109770-56109789 Msa0030130:intron 40.0%
GTATTCTATTGCTCATAGGG+GGG - chr1_1:56110044-56110063 Msa0030130:intron 40.0%
AAACAATCCATTGCAGCCAA+AGG + chr1_1:56110161-56110180 None:intergenic 40.0%
GACAACAAAGCTAAAGGTAG+TGG - chr1_1:56110338-56110357 Msa0030130:five_prime_UTR 40.0%
AAATCAGCTAATCTAGGAGG+AGG + chr1_1:56110395-56110414 None:intergenic 40.0%
CCAAAATCAGCTAATCTAGG+AGG + chr1_1:56110398-56110417 None:intergenic 40.0%
!! CCTCCTAGATTAGCTGATTT+TGG - chr1_1:56110395-56110414 Msa0030130:five_prime_UTR 40.0%
ATCTTGTGGTACAGGAACTA+TGG - chr1_1:56110572-56110591 Msa0030130:intron 40.0%
ATATATGACAGAGGCCTCAT+AGG - chr1_1:56110769-56110788 Msa0030130:intron 40.0%
GATTCAATACCAGTCATGAG+TGG + chr1_1:56110797-56110816 None:intergenic 40.0%
AACTGACAGCAGAAAATGCA+CGG + chr1_1:56111027-56111046 None:intergenic 40.0%
CAAGATGCATCGTGATAGTT+AGG + chr1_1:56111100-56111119 None:intergenic 40.0%
TATCACGATGCATCTTGAAC+AGG - chr1_1:56111103-56111122 Msa0030130:intron 40.0%
AAGCATTCTCAACATACCCT+CGG - chr1_1:56111130-56111149 Msa0030130:intron 40.0%
AGTACTTAACTGCTTTGCAC+TGG - chr1_1:56111307-56111326 Msa0030130:intron 40.0%
GTACTTAACTGCTTTGCACT+GGG - chr1_1:56111308-56111327 Msa0030130:intron 40.0%
CGATTCCACTTGGAGAAAGT+GGG + chr1_1:56105624-56105643 None:intergenic 45.0%
ACTTTCTCCAAGTGGAATCG+CGG - chr1_1:56105624-56105643 Msa0030130:three_prime_UTR 45.0%
!! CAGATTTGGCTCTGAATGTC+TGG - chr1_1:56107085-56107104 Msa0030130:CDS 45.0%
AAAAACCGTCGCAACACAGA+TGG + chr1_1:56107221-56107240 None:intergenic 45.0%
!! GTGTATGGTGGATCCATCTT+TGG - chr1_1:56107256-56107275 Msa0030130:intron 45.0%
ATCTTCATCAAGTTTCGGGC+AGG - chr1_1:56107384-56107403 Msa0030130:intron 45.0%
TTTACCTTGTATCCTGCTGG+AGG + chr1_1:56108023-56108042 None:intergenic 45.0%
AGCTTTACCTTGTATCCTGC+TGG + chr1_1:56108026-56108045 None:intergenic 45.0%
GGACCTGCAATATTAGGACA+TGG + chr1_1:56108421-56108440 None:intergenic 45.0%
TATTGCAGGTCCCTGTTAAG+TGG - chr1_1:56108429-56108448 Msa0030130:intron 45.0%
!!! CTGCTTTTTGGCCACTTAAC+AGG + chr1_1:56108443-56108462 None:intergenic 45.0%
!! CACACCTCATCTCTGCTTTT+TGG + chr1_1:56108455-56108474 None:intergenic 45.0%
CAAAAAGCAGAGATGAGGTG+TGG - chr1_1:56108453-56108472 Msa0030130:intron 45.0%
TCATGTGCAAGGTGAGTATG+CGG + chr1_1:56108491-56108510 None:intergenic 45.0%
GGTGAAAAGATAGCGTTTCC+TGG - chr1_1:56108542-56108561 Msa0030130:intron 45.0%
GAAAAGATAGCGTTTCCTGG+AGG - chr1_1:56108545-56108564 Msa0030130:intron 45.0%
GGCAAATGTAAGTCTGCATC+TGG - chr1_1:56108613-56108632 Msa0030130:intron 45.0%
!! AAGTCTGCATCTGGCTTTAC+TGG - chr1_1:56108622-56108641 Msa0030130:intron 45.0%
TTTCAGACATGGGAGTTCTG+TGG - chr1_1:56108663-56108682 Msa0030130:intron 45.0%
TTCAGACATGGGAGTTCTGT+GGG - chr1_1:56108664-56108683 Msa0030130:intron 45.0%
!! ATGCACATCATTTGGTGCCA+AGG + chr1_1:56109533-56109552 None:intergenic 45.0%
ATCCAATTTGCCCTCGAAAG+AGG - chr1_1:56109562-56109581 Msa0030130:CDS 45.0%
TTCCTCTTTCGAGGGCAAAT+TGG + chr1_1:56109567-56109586 None:intergenic 45.0%
AGAGGAATTCCGGCATATCT+TGG - chr1_1:56109580-56109599 Msa0030130:CDS 45.0%
GAGTATGCGAAATAACCTCC+TGG + chr1_1:56109733-56109752 None:intergenic 45.0%
TCATCCTGAGCATATGCTTC+TGG + chr1_1:56109760-56109779 None:intergenic 45.0%
! GCAGATCCTGATGCAGTTTT+TGG - chr1_1:56109943-56109962 Msa0030130:intron 45.0%
GAGTACTCACGTTCACTGTA+AGG + chr1_1:56109994-56110013 None:intergenic 45.0%
GGGTCATTCTGTTTCCTTCA+TGG + chr1_1:56110189-56110208 None:intergenic 45.0%
TGGAGCTGCTCTTAAAGACA+AGG - chr1_1:56110693-56110712 Msa0030130:intron 45.0%
AGTGTGTTTGGTCCATCTTG+AGG + chr1_1:56110742-56110761 None:intergenic 45.0%
TTGTCAAATAGCGGTTGCAG+TGG + chr1_1:56110929-56110948 None:intergenic 45.0%
CTTACGACTTACTCCATGCA+TGG - chr1_1:56111154-56111173 Msa0030130:intron 45.0%
GAAGAAAGATTGCAGTCCAG+AGG - chr1_1:56111197-56111216 Msa0030130:intron 45.0%
CGGAAGATTACAAAACCGGT+AGG + chr1_1:56111255-56111274 None:intergenic 45.0%
GCTAACTAGTGGAAGCTTCA+GGG - chr1_1:56111413-56111432 Msa0030130:five_prime_UTR 45.0%
! GGATCAAAGCACTTCTCAAG+TGG - chr1_1:56111515-56111534 Msa0030130:five_prime_UTR 45.0%
GCAAACCCACTTTCTCCAAG+TGG - chr1_1:56105616-56105635 Msa0030130:three_prime_UTR 50.0%
GCGATTCCACTTGGAGAAAG+TGG + chr1_1:56105625-56105644 None:intergenic 50.0%
TTTACCACCGCGATTCCACT+TGG + chr1_1:56105634-56105653 None:intergenic 50.0%
GAACTCATCAGAGTCAGAGC+AGG - chr1_1:56105690-56105709 Msa0030130:three_prime_UTR 50.0%
! TTTCCCTCCTATGGAGTGTC+TGG - chr1_1:56106682-56106701 Msa0030130:intron 50.0%
CTTTGGACCAGACACTCCAT+AGG + chr1_1:56106692-56106711 None:intergenic 50.0%
!! TTGGTGTTGCGACGTTCAGT+TGG - chr1_1:56107051-56107070 Msa0030130:CDS 50.0%
!! TGGTGTTGCGACGTTCAGTT+GGG - chr1_1:56107052-56107071 Msa0030130:CDS 50.0%
! TGCGACGTTCAGTTGGGTTT+TGG - chr1_1:56107058-56107077 Msa0030130:CDS 50.0%
TGCTTCCATCTGTGTTGCGA+CGG - chr1_1:56107213-56107232 Msa0030130:intron 50.0%
CGGGTCATCATATTTGGGTG+CGG - chr1_1:56107333-56107352 Msa0030130:intron 50.0%
GGTGCGGATGATGACAATGA+TGG - chr1_1:56107349-56107368 Msa0030130:intron 50.0%
ATCAAGTTTCGGGCAGGTTG+AGG - chr1_1:56107390-56107409 Msa0030130:intron 50.0%
GACATTGTCCTCCTGCAGAA+AGG - chr1_1:56107976-56107995 Msa0030130:CDS 50.0%
CAATTGTAGCGCCTTTCTGC+AGG + chr1_1:56107990-56108009 None:intergenic 50.0%
GTGGCCAAAAAGCAGAGATG+AGG - chr1_1:56108448-56108467 Msa0030130:intron 50.0%
CATGTGCAAGGTGAGTATGC+GGG + chr1_1:56108490-56108509 None:intergenic 50.0%
AAGATAGCGTTTCCTGGAGG+TGG - chr1_1:56108548-56108567 Msa0030130:intron 50.0%
AGATAGCGTTTCCTGGAGGT+GGG - chr1_1:56108549-56108568 Msa0030130:intron 50.0%
TGAAAATGAGTCCCACCTCC+AGG + chr1_1:56108563-56108582 None:intergenic 50.0%
TTGCGGACAGTGCTTGATGT+TGG - chr1_1:56109451-56109470 Msa0030130:intron 50.0%
! ACAGTGCTTGATGTTGGCTG+TGG - chr1_1:56109457-56109476 Msa0030130:CDS 50.0%
!! GGCTGTGGTGTTGCAAGTTT+CGG - chr1_1:56109472-56109491 Msa0030130:CDS 50.0%
!! TGTGGTGTTGCAAGTTTCGG+AGG - chr1_1:56109475-56109494 Msa0030130:CDS 50.0%
!! GTGGTGTTGCAAGTTTCGGA+GGG - chr1_1:56109476-56109495 Msa0030130:CDS 50.0%
TGCCCTCGAAAGAGGAATTC+CGG - chr1_1:56109570-56109589 Msa0030130:CDS 50.0%
TGCCGGAATTCCTCTTTCGA+GGG + chr1_1:56109575-56109594 None:intergenic 50.0%
ATGCCGGAATTCCTCTTTCG+AGG + chr1_1:56109576-56109595 None:intergenic 50.0%
! TCCGGCATATCTTGGTGTGT+TGG - chr1_1:56109588-56109607 Msa0030130:CDS 50.0%
CCCAACACACCAAGATATGC+CGG + chr1_1:56109592-56109611 None:intergenic 50.0%
! CCGGCATATCTTGGTGTGTT+GGG - chr1_1:56109589-56109608 Msa0030130:CDS 50.0%
TTGAACTAGACCGGGTTCTC+AGG - chr1_1:56109707-56109726 Msa0030130:intron 50.0%
! GTCTCCAGAAGCATATGCTC+AGG - chr1_1:56109753-56109772 Msa0030130:intron 50.0%
ATCTTGTGGGGCGTATGTGT+TGG - chr1_1:56109812-56109831 Msa0030130:intron 50.0%
! AAGGTAGTGGCTTAGCTCCA+TGG - chr1_1:56110351-56110370 Msa0030130:five_prime_UTR 50.0%
AGCTAATCTAGGAGGAGGAC+TGG + chr1_1:56110390-56110409 None:intergenic 50.0%
GGAGTAAGTCGTAAGTCCGA+GGG + chr1_1:56111149-56111168 None:intergenic 50.0%
TGGAGTAAGTCGTAAGTCCG+AGG + chr1_1:56111150-56111169 None:intergenic 50.0%
CAGACAAGACAGTCCATGCA+TGG + chr1_1:56111170-56111189 None:intergenic 50.0%
AGCAGTTGCAACCGCAGATT+CGG - chr1_1:56111332-56111351 Msa0030130:intron 50.0%
AGAGTCAGAACCCGAATCTG+CGG + chr1_1:56111346-56111365 None:intergenic 50.0%
! TTCGGGTTCTGACTCTGTTC+AGG - chr1_1:56111350-56111369 Msa0030130:five_prime_UTR 50.0%
GGCTAACTAGTGGAAGCTTC+AGG - chr1_1:56111412-56111431 Msa0030130:five_prime_UTR 50.0%
TTCTCCAAGTGGAATCGCGG+TGG - chr1_1:56105627-56105646 Msa0030130:three_prime_UTR 55.0%
CTCTGATGAGTTCCGTCTCG+AGG + chr1_1:56105683-56105702 None:intergenic 55.0%
GGACCAGACACTCCATAGGA+GGG + chr1_1:56106688-56106707 None:intergenic 55.0%
TGGACCAGACACTCCATAGG+AGG + chr1_1:56106689-56106708 None:intergenic 55.0%
ATGTCGAGGGGGAGATCTGA+TGG - chr1_1:56107169-56107188 Msa0030130:intron 55.0%
TGTCGAGGGGGAGATCTGAT+GGG - chr1_1:56107170-56107189 Msa0030130:intron 55.0%
! AAGTTTCGGGCAGGTTGAGG+AGG - chr1_1:56107393-56107412 Msa0030130:intron 55.0%
TTGTAGCGCCTTTCTGCAGG+AGG + chr1_1:56107987-56108006 None:intergenic 55.0%
TGCTTGATTCCACCTCCAGC+AGG - chr1_1:56108008-56108027 Msa0030130:CDS 55.0%
TCCACCTCCAGCAGGATACA+AGG - chr1_1:56108016-56108035 Msa0030130:CDS 55.0%
ACCTTGTATCCTGCTGGAGG+TGG + chr1_1:56108020-56108039 None:intergenic 55.0%
CGTCAGACTGGCATAGAGGA+GGG + chr1_1:56109924-56109943 None:intergenic 55.0%
TCTGCGTCAGACTGGCATAG+AGG + chr1_1:56109928-56109947 None:intergenic 55.0%
CATCAGGATCTGCGTCAGAC+TGG + chr1_1:56109936-56109955 None:intergenic 55.0%
CTGGTCAATCTTGCAGGCCA+TGG + chr1_1:56110371-56110390 None:intergenic 55.0%
!! GGAGGACTGGTCAATCTTGC+AGG + chr1_1:56110377-56110396 None:intergenic 55.0%
AGTCATGAGTGGCGCCTATG+AGG + chr1_1:56110786-56110805 None:intergenic 55.0%
TCATAGGCGCCACTCATGAC+TGG - chr1_1:56110785-56110804 Msa0030130:intron 55.0%
AACCGGTAGGTCTAAGCACG+CGG + chr1_1:56111242-56111261 None:intergenic 55.0%
GCAGTTGCAACCGCAGATTC+GGG - chr1_1:56111333-56111352 Msa0030130:intron 55.0%
AACCTCCTGGCCTGAGAACC+CGG + chr1_1:56109720-56109739 None:intergenic 60.0%
CATAGAGGAGGGCGAGTACC+AGG + chr1_1:56109913-56109932 None:intergenic 60.0%
GCGTCAGACTGGCATAGAGG+AGG + chr1_1:56109925-56109944 None:intergenic 60.0%
GACCGCGTGCTTAGACCTAC+CGG - chr1_1:56111237-56111256 Msa0030130:intron 60.0%
CTAGACCGGGTTCTCAGGCC+AGG - chr1_1:56109712-56109731 Msa0030130:intron 65.0%
GACCGGGTTCTCAGGCCAGG+AGG - chr1_1:56109715-56109734 Msa0030130:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 56105615 56111875 56105615 ID=Msa0030130;Name=Msa0030130
chr1_1 mRNA 56105615 56111875 56105615 ID=Msa0030130-mRNA-1;Parent=Msa0030130;Name=Msa0030130-mRNA-1;_AED=0.06;_eAED=0.06;_QI=521|1|1|1|0.66|0.6|10|429|624
chr1_1 exon 56105615 56106365 56105615 ID=Msa0030130-mRNA-1:exon:16763;Parent=Msa0030130-mRNA-1
chr1_1 exon 56106684 56106904 56106684 ID=Msa0030130-mRNA-1:exon:16762;Parent=Msa0030130-mRNA-1
chr1_1 exon 56107042 56107154 56107042 ID=Msa0030130-mRNA-1:exon:16761;Parent=Msa0030130-mRNA-1
chr1_1 exon 56107487 56108081 56107487 ID=Msa0030130-mRNA-1:exon:16760;Parent=Msa0030130-mRNA-1
chr1_1 exon 56108871 56109053 56108871 ID=Msa0030130-mRNA-1:exon:16759;Parent=Msa0030130-mRNA-1
chr1_1 exon 56109453 56109617 56109453 ID=Msa0030130-mRNA-1:exon:16758;Parent=Msa0030130-mRNA-1
chr1_1 exon 56110046 56110499 56110046 ID=Msa0030130-mRNA-1:exon:16757;Parent=Msa0030130-mRNA-1
chr1_1 exon 56111338 56111577 56111338 ID=Msa0030130-mRNA-1:exon:16756;Parent=Msa0030130-mRNA-1
chr1_1 exon 56111657 56111725 56111657 ID=Msa0030130-mRNA-1:exon:16755;Parent=Msa0030130-mRNA-1
chr1_1 exon 56111842 56111875 56111842 ID=Msa0030130-mRNA-1:exon:16754;Parent=Msa0030130-mRNA-1
chr1_1 five_prime_UTR 56111842 56111875 56111842 ID=Msa0030130-mRNA-1:five_prime_utr;Parent=Msa0030130-mRNA-1
chr1_1 five_prime_UTR 56111657 56111725 56111657 ID=Msa0030130-mRNA-1:five_prime_utr;Parent=Msa0030130-mRNA-1
chr1_1 five_prime_UTR 56111338 56111577 56111338 ID=Msa0030130-mRNA-1:five_prime_utr;Parent=Msa0030130-mRNA-1
chr1_1 five_prime_UTR 56110322 56110499 56110322 ID=Msa0030130-mRNA-1:five_prime_utr;Parent=Msa0030130-mRNA-1
chr1_1 CDS 56110046 56110321 56110046 ID=Msa0030130-mRNA-1:cds;Parent=Msa0030130-mRNA-1
chr1_1 CDS 56109453 56109617 56109453 ID=Msa0030130-mRNA-1:cds;Parent=Msa0030130-mRNA-1
chr1_1 CDS 56108871 56109053 56108871 ID=Msa0030130-mRNA-1:cds;Parent=Msa0030130-mRNA-1
chr1_1 CDS 56107487 56108081 56107487 ID=Msa0030130-mRNA-1:cds;Parent=Msa0030130-mRNA-1
chr1_1 CDS 56107042 56107154 56107042 ID=Msa0030130-mRNA-1:cds;Parent=Msa0030130-mRNA-1
chr1_1 CDS 56106684 56106904 56106684 ID=Msa0030130-mRNA-1:cds;Parent=Msa0030130-mRNA-1
chr1_1 CDS 56106044 56106365 56106044 ID=Msa0030130-mRNA-1:cds;Parent=Msa0030130-mRNA-1
chr1_1 three_prime_UTR 56105615 56106043 56105615 ID=Msa0030130-mRNA-1:three_prime_utr;Parent=Msa0030130-mRNA-1
Gene Sequence

>Msa0030130

ATGTCGAGGGGGAGATCTGATGGGTCACAAAAGAAGCGCATAGTTGCTTCCATCTGTGTTGCGACGGTTTTTATTGGTTTATTGTATGTGTATGGTGGATCCATCTTTGGTTCTCAAAGTAGTGGTTCATCTGCTCTAGAATATGGCAAATCATTAAGGAAACTCGGGTCATCATATTTGGGTGCGGATGATGACAATGATGGCAAGCAAGATGAATCTTCATCAAGTTTCGGGCAGGTTGAGGAGGACGACAATATTGTTCCAAAGAGTTTCCCTGTTTGTGATGATCGACATTCGGAGTTGATTCCTTGCTTAGATAGACACCTTATCTATCAACTGCGGATGAAATTGGACTTGTCTGTGATGGAACACTATGAGAGACATTGTCCTCCTGCAGAAAGGCGCTACAATTGCTTGATTCCACCTCCAGCAGGATACAAGGTCCCTGTTAAGTGGCCAAAAAGCAGAGATGAGGTGTGGAAAGCAAATATCCCGCATACTCACCTTGCACATGAAAAATCTGACCAGAACTGGATGGTTGAAAAAGGTGAAAAGATAGCGTTTCCTGGAGGTGGGACTCATTTTCATTATGGAGCTGATAAGTACATTGCATCAATGGCAAATATGCTTAACTTTTCGAACAATAATCTAAACAATGAAGGAAGATTGCGGACAGTGCTTGATGTTGGCTGTGGTGTTGCAAGTTTCGGAGGGTACCTTCTTGCATCTGATATCATTACAATGTCCTTGGCACCAAATGATGTGCATCAAAATCAAATCCAATTTGCCCTCGAAAGAGGAATTCCGGCATATCTTGGTGTGTTGGGAACTAAGAGACTTCCATACCCAAGCAGATCTTTTGAACTTGCTCATTGTTCTCGTTGTCGAATTGATTGGCTTCAGAGAGATGGAATACTACTTCTTGAACTAGACCGGGTTCTCAGGCCAGGAGGTTATTTCGCATACTCGTCTCCAGAAGCATATGCTCAGGATGAAGAGAATCTAAGGATATGGAAAGAAATGAGTGATCTTGTGGGGCGTATGTGTTGGAGAATAGCTTCAAAAAAGAACCAAACTGTTATCTGGCAAAAACCTTTGACAAATGATTGCTATAAAAAAAGAGAACCTGGTACTCGCCCTCCTCTATGCCAGTCTGACGCAGATCCTGATGCAGTTTTTGGAGTAAATATGGAAGTTTGCATAACACCTTACAGTGAACATGACAACAAAGCTAAAGGTAGTGGCTTAGCTCCATGGCCTGCAAGATTGACCAGTCCTCCTCCTAGATTAGCTGATTTTGGCTATTCAAATGAAATGTTCGAAAAGGACACGGAACTATGGCGAGAGAGAGTTGATAAATACTGGAGTCTCATGAGTAAAAAAATCAAATCCGATACAATAAGGAATATTATGGATATGAAAGCTAACATGGGTTCATTTGGAGCTGCTCTTAAAGACAAGGATGTATGGGTGATGAATGTTGTACCTCAAGATGGACCAAACACACTTAAAGTTATATATGACAGAGGCCTCATAGGCGCCACTCATGACTGGTGTGAAGCATTCTCAACATACCCTCGGACTTACGACTTACTCCATGCATGGACTGTCTTGTCTGACGTAGCGAAGAAAGATTGCAGTCCAGAGGATCTATTGATTGAGATGGACCGCGTGCTTAGACCTACCGGTTTTGTAATCTTCCGTGATAAACAGCCAATGATTGATTTCGTGAAGAAGTACTTAACTGCTTTGCACTGGGAAGCAGTTGCAACCGCAGATTCGGGTTCTGACTCTGTTCAGGACAGTGATGAAGTTGTTTTTATCATACAGAAGAAATTGTGGCTAACTAGTGGAAGCTTCAGGGATACTGAATGA
Protein sequence

>Msa0030130

MSRGRSDGSQKKRIVASICVATVFIGLLYVYGGSIFGSQSSGSSALEYGKSLRKLGSSYLGADDDNDGKQDESSSSFGQVEEDDNIVPKSFPVCDDRHSELIPCLDRHLIYQLRMKLDLSVMEHYERHCPPAERRYNCLIPPPAGYKVPVKWPKSRDEVWKANIPHTHLAHEKSDQNWMVEKGEKIAFPGGGTHFHYGADKYIASMANMLNFSNNNLNNEGRLRTVLDVGCGVASFGGYLLASDIITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEENLRIWKEMSDLVGRMCWRIASKKNQTVIWQKPLTNDCYKKREPGTRPPLCQSDADPDAVFGVNMEVCITPYSEHDNKAKGSGLAPWPARLTSPPPRLADFGYSNEMFEKDTELWRERVDKYWSLMSKKIKSDTIRNIMDMKANMGSFGAALKDKDVWVMNVVPQDGPNTLKVIYDRGLIGATHDWCEAFSTYPRTYDLLHAWTVLSDVAKKDCSPEDLLIEMDRVLRPTGFVIFRDKQPMIDFVKKYLTALHWEAVATADSGSDSVQDSDEVVFIIQKKLWLTSGSFRDTE*