AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170130 MtrunA17_Chr1g0187601 98.237 624 11 0 1 624 1 624 0.0 1282
Msa0170130 MtrunA17_Chr1g0167381 81.891 624 112 1 1 623 1 624 0.0 1088
Msa0170130 MtrunA17_Chr1g0183721 68.800 625 164 3 1 624 1 595 0.0 925
Msa0170130 MtrunA17_Chr3g0112341 46.845 523 252 9 79 588 136 645 1.33e-165 488
Msa0170130 MtrunA17_Chr5g0435751 45.866 508 236 7 89 589 123 598 2.06e-161 476
Msa0170130 MtrunA17_Chr1g0159741 45.349 516 252 11 91 593 141 639 1.50e-158 470
Msa0170130 MtrunA17_Chr1g0171781 41.100 618 331 9 8 614 8 603 3.98e-155 459
Msa0170130 MtrunA17_Chr7g0246701 43.704 540 271 12 92 614 102 625 2.40e-149 446
Msa0170130 MtrunA17_Chr8g0361791 40.157 635 331 15 5 624 10 610 4.17e-149 444
Msa0170130 MtrunA17_Chr8g0388881 42.910 543 275 13 89 614 96 620 8.09e-149 444
Msa0170130 MtrunA17_Chr5g0437501 44.821 502 252 9 100 588 101 590 2.61e-148 442
Msa0170130 MtrunA17_Chr4g0055031 41.250 560 295 11 72 617 67 606 2.00e-147 440
Msa0170130 MtrunA17_Chr5g0416991 39.688 640 339 16 1 624 1 609 8.65e-147 438
Msa0170130 MtrunA17_Chr8g0350391 42.802 514 267 9 91 588 105 607 1.13e-145 436
Msa0170130 MtrunA17_Chr3g0130381 41.497 588 301 14 41 614 218 776 1.70e-145 441
Msa0170130 MtrunA17_Chr1g0203741 42.647 544 276 14 90 614 91 617 1.33e-144 433
Msa0170130 MtrunA17_Chr3g0125511 43.289 529 269 12 99 614 232 742 1.72e-144 437
Msa0170130 MtrunA17_Chr6g0472571 41.894 549 285 12 91 623 105 635 3.78e-144 432
Msa0170130 MtrunA17_Chr7g0246681 41.852 540 289 9 82 614 66 587 6.57e-144 430
Msa0170130 MtrunA17_Chr8g0369481 38.523 623 325 11 11 617 11 591 1.07e-143 430
Msa0170130 MtrunA17_Chr8g0384431 43.849 504 256 11 100 589 298 788 3.90e-142 432
Msa0170130 MtrunA17_Chr3g0092501 39.002 641 335 17 2 623 3 606 3.31e-141 424
Msa0170130 MtrunA17_Chr8g0350351 41.132 530 283 10 94 614 91 600 5.07e-141 423
Msa0170130 MtrunA17_Chr3g0113981 43.750 496 259 8 100 590 175 655 5.53e-139 420
Msa0170130 MtrunA17_Chr7g0214551 43.536 526 268 13 91 598 43 557 6.23e-139 417
Msa0170130 MtrunA17_Chr5g0409411 38.179 626 328 13 10 619 13 595 1.22e-138 417
Msa0170130 MtrunA17_Chr8g0372471 42.938 531 277 12 71 590 358 873 3.32e-138 425
Msa0170130 MtrunA17_Chr5g0426281 34.873 628 354 12 9 614 76 670 1.89e-121 375
Msa0170130 MtrunA17_Chr3g0115931 36.182 550 314 11 89 614 152 688 6.32e-117 363
Msa0170130 MtrunA17_Chr1g0155141 35.472 530 303 11 93 614 201 699 1.01e-103 329
Msa0170130 MtrunA17_Chr5g0404771 50.391 256 111 5 99 353 328 568 8.38e-80 263
Msa0170130 MtrunA17_Chr4g0043121 32.082 293 189 4 89 375 84 372 8.78e-56 195
Msa0170130 MtrunA17_Chr5g0404761 40.996 261 133 9 341 587 1 254 2.24e-55 189
Msa0170130 MtrunA17_Chr4g0043131 46.199 171 74 3 445 597 2 172 1.02e-41 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170130 AT1G04430.1 78.288 631 122 5 1 624 1 623 0.0 1040
Msa0170130 AT1G04430.3 78.288 631 122 5 1 624 1 623 0.0 1040
Msa0170130 AT1G04430.2 78.288 631 122 5 1 624 1 623 0.0 1040
Msa0170130 AT3G23300.2 77.564 624 124 6 3 624 2 611 0.0 1002
Msa0170130 AT3G23300.1 77.564 624 124 6 3 624 2 611 0.0 1002
Msa0170130 AT4G14360.1 78.617 622 118 6 3 624 2 608 0.0 978
Msa0170130 AT4G14360.2 78.617 622 118 6 3 624 2 608 0.0 978
Msa0170130 AT5G14430.1 61.603 599 202 3 24 614 26 604 0.0 766
Msa0170130 AT5G14430.2 61.102 599 205 3 24 614 26 604 0.0 761
Msa0170130 AT2G39750.1 45.558 529 267 8 68 588 154 669 1.45e-167 494
Msa0170130 AT1G77260.1 44.424 547 278 10 60 595 108 639 1.01e-165 489
Msa0170130 AT5G06050.1 42.908 564 284 11 37 588 104 641 1.75e-164 486
Msa0170130 AT3G10200.1 45.403 533 277 8 86 614 66 588 2.65e-161 475
Msa0170130 AT5G04060.1 45.038 524 275 7 93 614 85 597 4.04e-160 472
Msa0170130 AT3G10200.2 47.292 480 241 6 86 561 66 537 9.30e-153 453
Msa0170130 AT2G45750.1 43.853 545 271 11 90 614 86 615 7.95e-152 452
Msa0170130 AT4G10440.1 43.879 531 266 13 76 588 77 593 2.40e-150 448
Msa0170130 AT1G33170.1 43.654 520 265 10 85 588 104 611 3.36e-150 448
Msa0170130 AT5G64030.1 44.821 531 261 11 100 617 308 819 7.58e-148 448
Msa0170130 AT2G34300.2 44.571 525 260 11 102 614 252 757 1.24e-147 446
Msa0170130 AT2G34300.3 44.571 525 260 11 102 614 252 757 1.24e-147 446
Msa0170130 AT2G34300.1 44.571 525 260 11 102 614 252 757 1.24e-147 446
Msa0170130 AT3G51070.1 41.709 597 302 14 37 614 320 889 3.49e-146 446
Msa0170130 AT1G26850.2 39.937 636 330 16 4 619 10 613 1.26e-145 436
Msa0170130 AT1G26850.1 39.937 636 330 16 4 619 10 613 1.26e-145 436
Msa0170130 AT1G29470.1 43.898 549 276 13 79 614 228 757 1.95e-145 440
Msa0170130 AT1G29470.2 43.898 549 276 13 79 614 228 757 1.95e-145 440
Msa0170130 AT4G19120.1 39.071 581 327 8 55 623 34 599 2.98e-145 434
Msa0170130 AT4G19120.2 39.071 581 327 8 55 623 34 599 2.98e-145 434
Msa0170130 AT4G00750.1 37.915 633 346 16 3 614 16 622 4.87e-141 424
Msa0170130 AT4G00740.1 38.742 604 328 13 20 614 23 593 1.48e-140 422
Msa0170130 AT4G00740.2 38.742 604 328 13 20 614 23 593 1.48e-140 422
Msa0170130 AT2G40280.1 44.242 495 252 11 100 588 90 566 1.99e-138 416
Msa0170130 AT3G56080.1 43.434 495 259 10 100 588 114 593 3.71e-136 411
Msa0170130 AT2G43200.2 42.804 535 270 15 91 608 91 606 1.26e-135 410
Msa0170130 AT2G43200.1 42.804 535 270 15 91 608 91 606 1.26e-135 410
Msa0170130 AT1G31850.1 35.601 632 359 12 1 617 1 599 1.28e-135 409
Msa0170130 AT1G31850.2 35.601 632 359 12 1 617 1 599 1.28e-135 409
Msa0170130 AT1G31850.4 35.601 632 359 12 1 617 1 599 1.28e-135 409
Msa0170130 AT1G31850.3 35.601 632 359 12 1 617 1 599 1.28e-135 409
Msa0170130 AT3G51070.2 47.216 449 213 9 99 534 380 817 3.21e-135 416
Msa0170130 AT4G18030.1 40.883 521 266 10 88 588 82 580 5.50e-133 403
Msa0170130 AT3G56080.2 44.789 451 229 9 100 544 114 550 2.51e-127 386
Msa0170130 AT4G19120.3 39.706 476 265 6 55 518 34 499 7.29e-119 363
Msa0170130 AT1G78240.1 35.165 546 318 10 89 611 144 676 7.16e-117 363
Msa0170130 AT1G78240.2 35.165 546 318 10 89 611 144 676 7.16e-117 363
Msa0170130 AT1G26850.3 38.867 512 266 13 4 496 10 493 1.36e-109 339
Msa0170130 AT1G13860.4 34.229 558 298 12 89 613 79 600 1.72e-109 342
Msa0170130 AT1G13860.3 34.229 558 298 12 89 613 79 600 1.72e-109 342
Msa0170130 AT1G13860.1 34.229 558 298 12 89 613 79 600 1.72e-109 342
Msa0170130 AT1G13860.5 34.229 558 298 12 89 613 79 600 1.72e-109 342
Msa0170130 AT1G19430.1 37.453 534 294 13 90 614 220 722 8.51e-106 336
Msa0170130 AT1G19430.3 37.453 534 294 13 90 614 220 722 8.51e-106 336
Msa0170130 AT2G03480.2 35.821 536 280 12 89 597 84 582 1.66e-104 329
Msa0170130 AT2G03480.1 34.791 549 301 13 89 611 84 601 8.58e-99 314
Msa0170130 AT1G13860.2 35.914 465 247 10 179 613 1 444 1.10e-95 301
Msa0170130 AT1G19430.2 34.250 400 230 11 90 480 220 595 3.57e-61 214
Msa0170130 AT2G03480.3 33.333 285 175 4 89 364 84 362 3.68e-55 194

Find 181 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTCTGATTTGAATTAT+TGG 0.158327 1_4:+53934550 Msa0170130:five_prime_UTR
GAAACTCGGGTCATCATATT+TGG 0.159182 1_4:+53934845 Msa0170130:CDS
CCTCCTAGATTAGCTGATTT+TGG 0.165968 1_4:+53937913 Msa0170130:CDS
TCAAGTTATTATTAAGAAAT+AGG 0.196879 1_4:+53939135 Msa0170130:three_prime_UTR
CTATCAACTGCGGATGAAAT+TGG 0.231856 1_4:+53935444 Msa0170130:CDS
ATGAATCTTCATCAAGTTTC+GGG 0.251904 1_4:+53934898 Msa0170130:CDS
CGATACAATAAGGAATATTA+TGG 0.266438 1_4:+53938163 Msa0170130:CDS
TTGTACTATTCTGTTTAGTA+TGG 0.274573 1_4:+53939346 Msa0170130:three_prime_UTR
TGCGACGTTCAGTTGGGTTT+TGG 0.276747 1_4:+53934576 Msa0170130:five_prime_UTR
AACCGACAGTGTGAAATTTA+AGG 0.283990 1_4:-53933489 None:intergenic
AGATCCAAATTCCGATTAAA+AGG 0.289018 1_4:-53934637 None:intergenic
AAATAGGCATCACGCTTTAT+AGG 0.297432 1_4:+53939151 Msa0170130:three_prime_UTR
TTCCTCTTTCGAGGGCAAAT+TGG 0.300813 1_4:-53937082 None:intergenic
AGACTTACAGGGAAACTCTT+TGG 0.313437 1_4:-53934948 None:intergenic
TCATCCTGAGCATATGCTTC+TGG 0.327211 1_4:-53937275 None:intergenic
ATCTTGTGGTACAGGAACTA+TGG 0.329209 1_4:+53938090 Msa0170130:intron
ATGAAGAGAATCTAAGGATA+TGG 0.338817 1_4:+53937294 Msa0170130:CDS
TAGAATATGACAAATCATTA+AGG 0.338822 1_4:+53934823 Msa0170130:CDS
GGCTAACTAGTGGAAGCTTC+AGG 0.341074 1_4:+53938930 Msa0170130:CDS
GGCTGTGGTGTTGCAAGTTT+CGG 0.342008 1_4:+53936990 Msa0170130:CDS
GATGAATCTTCATCAAGTTT+CGG 0.344747 1_4:+53934897 Msa0170130:CDS
TTCGGGTTCTGACTCTGTTC+AGG 0.348361 1_4:+53938868 Msa0170130:CDS
AGCAGTTGCAACCGCAGATT+CGG 0.348674 1_4:+53938850 Msa0170130:CDS
AAAGCTAACATGGGTTCATT+TGG 0.352385 1_4:+53938191 Msa0170130:CDS
AAATCAAATCCGATACAATA+AGG 0.353127 1_4:+53938153 Msa0170130:CDS
GTGTATGGTGGATCCATCTT+TGG 0.355339 1_4:+53934774 Msa0170130:CDS
AAAAGAACCAAACTGTTATC+TGG 0.362259 1_4:+53937366 Msa0170130:CDS
TATATAACTTTAAGTGTGTT+TGG 0.364555 1_4:-53938269 None:intergenic
TGCCCTCGAAAGAGGAATTC+CGG 0.372896 1_4:+53937088 Msa0170130:CDS
ATTGGTTTATTGTATGTGTA+TGG 0.380007 1_4:+53934759 Msa0170130:CDS
CTCAGGATGAAGAGAATCTA+AGG 0.380827 1_4:+53937288 Msa0170130:CDS
GGAGGACTGGTCAATCTTGC+AGG 0.386413 1_4:-53937892 None:intergenic
CAGATTTGGCTCTGAATGTC+TGG 0.392842 1_4:+53934603 Msa0170130:five_prime_UTR
GGTTTAGCTTAGAATCCAAT+TGG 0.393722 1_4:-53933646 None:intergenic
GTTCTCGTTGTCGAATTGAT+TGG 0.395510 1_4:+53937177 Msa0170130:CDS
CTCTTAAAGACAAGGATGTA+TGG 0.398577 1_4:+53938219 Msa0170130:CDS
CCGGCATATCTTGGTGTGTT+GGG 0.409827 1_4:+53937107 Msa0170130:CDS
ATCTCAATCAATAGATCCTC+TGG 0.411086 1_4:-53938731 None:intergenic
GGTGAAAAGATAGCGTTTCC+TGG 0.413514 1_4:+53936060 Msa0170130:CDS
CAGAACTGGATGGTTGAAAA+AGG 0.415347 1_4:+53936039 Msa0170130:CDS
GAGAGAGAGTTGATAAATAC+TGG 0.416336 1_4:+53938114 Msa0170130:CDS
ATCACGGAAGATTACAAAAC+CGG 0.418144 1_4:-53938774 None:intergenic
CATAATATTCCTTATTGTAT+CGG 0.419784 1_4:-53938162 None:intergenic
GCAGTTGCAACCGCAGATTC+GGG 0.422319 1_4:+53938851 Msa0170130:CDS
TTCTTCACGAAATCAATCAT+TGG 0.425949 1_4:-53938803 None:intergenic
AGCTTTACCTTGTATCCTGC+TGG 0.439990 1_4:-53935541 None:intergenic
AAATTGAACTCACAACTTTG+CGG 0.442299 1_4:+53933309 Msa0170130:five_prime_UTR
TTGCTTACTGCTTCACCACT+TGG 0.443831 1_4:-53939048 None:intergenic
TAGCCAAAATCAGCTAATCT+AGG 0.446639 1_4:-53937916 None:intergenic
ACCTTGTATCCTGCTGGAGG+TGG 0.447322 1_4:-53935535 None:intergenic
ATCAAGTTTCGGGCAGGTTG+AGG 0.449725 1_4:+53934908 Msa0170130:CDS
TACTACTTCTTGAACTAGAC+CGG 0.450201 1_4:+53937216 Msa0170130:CDS
TGATAAGTACATTGCATCAA+TGG 0.450486 1_4:+53936110 Msa0170130:CDS
AGAGGAATTCCGGCATATCT+TGG 0.451720 1_4:+53937098 Msa0170130:CDS
TTGAACTAGACCGGGTTCTC+AGG 0.456403 1_4:+53937225 Msa0170130:CDS
TTGGTGTTGCGACGTTCAGT+TGG 0.457036 1_4:+53934569 Msa0170130:five_prime_UTR
TCAAAAGATCTGCTTGGGTA+TGG 0.460861 1_4:-53937143 None:intergenic
ATATATGACAGAGGCCTCAT+AGG 0.461279 1_4:+53938287 Msa0170130:CDS
AAGATAGCGTTTCCTGGAGG+TGG 0.467053 1_4:+53936066 Msa0170130:CDS
AAACTCGGGTCATCATATTT+GGG 0.469992 1_4:+53934846 Msa0170130:CDS
TTCAAATGAAATGTTCGAAA+AGG 0.471325 1_4:+53937939 Msa0170130:CDS
CATAGAGGAGGGCGAGTACC+AGG 0.471766 1_4:-53937428 None:intergenic
CAATTGTAGCGCCTTTCTGC+AGG 0.474236 1_4:-53935505 None:intergenic
AACCTCCTGGCCTGAGAACC+CGG 0.474438 1_4:-53937235 None:intergenic
GAGTACTCACGTTCACTGTA+AGG 0.479937 1_4:-53937509 None:intergenic
CAAGTTCAAAAGATCTGCTT+GGG 0.481909 1_4:-53937148 None:intergenic
CATCAGGATCTGCGTCAGAC+TGG 0.485907 1_4:-53937451 None:intergenic
AACAATAATCTAAACAATGA+AGG 0.490397 1_4:+53936942 Msa0170130:CDS
AGTACTTAACTGCTTTGCAC+TGG 0.490999 1_4:+53938825 Msa0170130:CDS
GGTTTATTGTATGTGTATGG+TGG 0.491063 1_4:+53934762 Msa0170130:CDS
GCGATTCCACTTGGAGAAAG+TGG 0.491205 1_4:-53933141 None:intergenic
ATCCAATTTGCCCTCGAAAG+AGG 0.492639 1_4:+53937080 Msa0170130:CDS
CTGGTCAATCTTGCAGGCCA+TGG 0.493398 1_4:-53937886 None:intergenic
GGTTTGTGATGATCGACATT+CGG 0.499002 1_4:+53935390 Msa0170130:intron
ATTGATTGGCTTCAGAGAGA+TGG 0.500213 1_4:+53937191 Msa0170130:CDS
CACCTTAAATTTCACACTGT+CGG 0.500946 1_4:+53933487 Msa0170130:five_prime_UTR
TTTCGGGCAGGTTGAGGAGG+AGG 0.501923 1_4:+53934914 Msa0170130:CDS
ATGCCGGAATTCCTCTTTCG+AGG 0.502230 1_4:-53937091 None:intergenic
TGATATCATTACAATGTCCT+TGG 0.502493 1_4:+53937031 Msa0170130:CDS
TGGTGTTGCGACGTTCAGTT+GGG 0.506408 1_4:+53934570 Msa0170130:five_prime_UTR
TCATCCGCAGTTGATAGATA+AGG 0.506793 1_4:-53935438 None:intergenic
TTTACCACCGCGATTCCACT+TGG 0.514346 1_4:-53933150 None:intergenic
TCATAGGCGCCACTCATGAC+TGG 0.514718 1_4:+53938303 Msa0170130:CDS
TGCTTCCATCTGTGTTGCGA+CGG 0.516462 1_4:+53934731 Msa0170130:CDS
ATGCACATCATTTGGTGCCA+AGG 0.517710 1_4:-53937048 None:intergenic
ATCTTTGGTTCTCAAAGTAG+TGG 0.519421 1_4:+53934789 Msa0170130:CDS
AGCTAATCTAGGAGGAGGAC+TGG 0.521950 1_4:-53937905 None:intergenic
AGTCATGAGTGGCGCCTATG+AGG 0.523143 1_4:-53938301 None:intergenic
TGAAAATGAGTCCCACCTCC+AGG 0.523764 1_4:-53936078 None:intergenic
GCTAACTAGTGGAAGCTTCA+GGG 0.524448 1_4:+53938931 Msa0170130:CDS
TCCGGCATATCTTGGTGTGT+TGG 0.527386 1_4:+53937106 Msa0170130:CDS
TGCTTGATTCCACCTCCAGC+AGG 0.528228 1_4:+53935526 Msa0170130:CDS
CGATTCCACTTGGAGAAAGT+GGG 0.528474 1_4:-53933140 None:intergenic
TCAGATGACAACAAAGCTAA+AGG 0.530234 1_4:+53937850 Msa0170130:intron
ATTATCTGCTATTGCTGCAA+GGG 0.531979 1_4:+53939012 Msa0170130:three_prime_UTR
TCCACCTCCAGCAGGATACA+AGG 0.532112 1_4:+53935534 Msa0170130:CDS
ATCTTCATCAAGTTTCGGGC+AGG 0.532250 1_4:+53934902 Msa0170130:CDS
CAATCATTGGCTGTTTATCA+CGG 0.533993 1_4:-53938790 None:intergenic
TATTGCAGGTCCCTGTTAAG+TGG 0.534088 1_4:+53935947 Msa0170130:intron
GTTTAGCTTAGAATCCAATT+GGG 0.535911 1_4:-53933645 None:intergenic
GACAAATCATTAAGGAAACT+CGG 0.538589 1_4:+53934831 Msa0170130:CDS
AAGAAATTGTGGCTAACTAG+TGG 0.541752 1_4:+53938920 Msa0170130:CDS
CTAGACCGGGTTCTCAGGCC+AGG 0.542143 1_4:+53937230 Msa0170130:CDS
GCAAGTTCAAAAGATCTGCT+TGG 0.542505 1_4:-53937149 None:intergenic
GACAACAAAGCTAAAGGTAG+TGG 0.545840 1_4:+53937856 Msa0170130:CDS
TATGGATATGAAAGCTAACA+TGG 0.546843 1_4:+53938181 Msa0170130:CDS
AGAGGATCTATTGATTGAGA+TGG 0.548428 1_4:+53938733 Msa0170130:CDS
ACTACTTTGAGAACCAAAGA+TGG 0.550404 1_4:-53934787 None:intergenic
TGCCGGAATTCCTCTTTCGA+GGG 0.551478 1_4:-53937090 None:intergenic
GTCTCCAGAAGCATATGCTC+AGG 0.552689 1_4:+53937271 Msa0170130:CDS
AAGGTAGTGGCTTAGCTCCA+TGG 0.554029 1_4:+53937869 Msa0170130:CDS
CATGTGCAAGGTGAGTATGC+GGG 0.554830 1_4:-53936005 None:intergenic
GTACTTAACTGCTTTGCACT+GGG 0.555902 1_4:+53938826 Msa0170130:CDS
CCCAACACACCAAGATATGC+CGG 0.557514 1_4:-53937107 None:intergenic
TCTTAAAGACAAGGATGTAT+GGG 0.561592 1_4:+53938220 Msa0170130:CDS
TGCTTACTGCTTCACCACTT+GGG 0.563853 1_4:-53939047 None:intergenic
TATTATCTGCTATTGCTGCA+AGG 0.565473 1_4:+53939011 Msa0170130:three_prime_UTR
AGTGTGTTTGGTCCATCTTG+AGG 0.566835 1_4:-53938257 None:intergenic
GACATTGTCCTCCTGCAGAA+AGG 0.568006 1_4:+53935494 Msa0170130:CDS
CTTACATAATACCCAAATGC+AGG 0.569944 1_4:-53939192 None:intergenic
TTATAGCAATCATTTGTCAA+AGG 0.570240 1_4:-53937395 None:intergenic
CGGGTCATCATATTTGGGTG+CGG 0.570443 1_4:+53934851 Msa0170130:CDS
TTATCATACAGAAGAAATTG+TGG 0.573042 1_4:+53938909 Msa0170130:CDS
CTTACGACTTACTCCATGCA+TGG 0.577084 1_4:+53938672 Msa0170130:CDS
ACAAATCATTAAGGAAACTC+GGG 0.585642 1_4:+53934832 Msa0170130:CDS
GAAAGAAATGAGTGATCTTG+TGG 0.587132 1_4:+53937316 Msa0170130:CDS
TGTGGTGTTGCAAGTTTCGG+AGG 0.588854 1_4:+53936993 Msa0170130:CDS
GAAATTGGACTTGTCTGTGA+TGG 0.590350 1_4:+53935459 Msa0170130:CDS
TTGCGGACAGTGCTTGATGT+TGG 0.592875 1_4:+53936969 Msa0170130:CDS
ACTACTTCTTGAACTAGACC+GGG 0.593228 1_4:+53937217 Msa0170130:CDS
TTTACCTTGTATCCTGCTGG+AGG 0.594171 1_4:-53935538 None:intergenic
ATGAATGTTGTACCTCAAGA+TGG 0.595874 1_4:+53938245 Msa0170130:CDS
TAATGATATCAGATGCAAGA+AGG 0.596202 1_4:-53937019 None:intergenic
CAGACAAGACAGTCCATGCA+TGG 0.597709 1_4:-53938685 None:intergenic
AAAGAAATGAGTGATCTTGT+GGG 0.597795 1_4:+53937317 Msa0170130:CDS
AAGTTTCGGGCAGGTTGAGG+AGG 0.598476 1_4:+53934911 Msa0170130:CDS
GCGTCAGACTGGCATAGAGG+AGG 0.600761 1_4:-53937440 None:intergenic
TCATGTGCAAGGTGAGTATG+CGG 0.601983 1_4:-53936006 None:intergenic
ATCTTGTGGGGCGTATGTGT+TGG 0.603803 1_4:+53937330 Msa0170130:CDS
TCTGCGTCAGACTGGCATAG+AGG 0.604282 1_4:-53937443 None:intergenic
TTGTAGCGCCTTTCTGCAGG+AGG 0.605032 1_4:-53935502 None:intergenic
AAGCATTCTCAACATACCCT+CGG 0.607953 1_4:+53938648 Msa0170130:CDS
AAATCAGCTAATCTAGGAGG+AGG 0.608894 1_4:-53937910 None:intergenic
ACAGTGCTTGATGTTGGCTG+TGG 0.609589 1_4:+53936975 Msa0170130:CDS
CGTCAGACTGGCATAGAGGA+GGG 0.612841 1_4:-53937439 None:intergenic
GAGTATGCGAAATAACCTCC+TGG 0.612850 1_4:-53937248 None:intergenic
GTGGTGTTGCAAGTTTCGGA+GGG 0.613327 1_4:+53936994 Msa0170130:CDS
AGATAGCGTTTCCTGGAGGT+GGG 0.614943 1_4:+53936067 Msa0170130:CDS
GACCGCGTGCTTAGACCTAC+CGG 0.616375 1_4:+53938755 Msa0170130:CDS
AGTCAGTGTATTGTATTGTG+AGG 0.617658 1_4:+53934520 Msa0170130:five_prime_UTR
TGGAGCTGCTCTTAAAGACA+AGG 0.618325 1_4:+53938211 Msa0170130:CDS
ATAAGGTGTCTATCTAAGCA+AGG 0.619479 1_4:-53935421 None:intergenic
TTTCAGCTAATAAATGTCGA+GGG 0.621039 1_4:+53934674 Msa0170130:exon
TGGAGTAAGTCGTAAGTCCG+AGG 0.621892 1_4:-53938665 None:intergenic
ATAACTAAAATACAAACACT+TGG 0.622410 1_4:+53933545 Msa0170130:five_prime_UTR
CTAGTTCAATAATCAAGACA+TGG 0.624276 1_4:+53939215 Msa0170130:three_prime_UTR
GTTTCAGCTAATAAATGTCG+AGG 0.624315 1_4:+53934673 Msa0170130:exon
GCAAACCCACTTTCTCCAAG+TGG 0.629272 1_4:+53933135 Msa0170130:five_prime_UTR
GAAGAAAGATTGCAGTCCAG+AGG 0.639031 1_4:+53938715 Msa0170130:CDS
GGTGCGGATGATGACAATGA+TGG 0.639680 1_4:+53934867 Msa0170130:CDS
CCAAAATCAGCTAATCTAGG+AGG 0.640226 1_4:-53937913 None:intergenic
TTCAGCTAATAAATGTCGAG+GGG 0.645373 1_4:+53934675 Msa0170130:exon
AGAGTCAGAACCCGAATCTG+CGG 0.645931 1_4:-53938861 None:intergenic
ACTTTCTCCAAGTGGAATCG+CGG 0.650721 1_4:+53933143 Msa0170130:five_prime_UTR
GGAGTAAGTCGTAAGTCCGA+GGG 0.656206 1_4:-53938664 None:intergenic
TAAACAATGAAGGAAGATTG+CGG 0.666101 1_4:+53936952 Msa0170130:CDS
CGACAGTGTGAAATTTAAGG+TGG 0.666495 1_4:-53933486 None:intergenic
TGAAATGTTCGAAAAGGACA+CGG 0.667841 1_4:+53937945 Msa0170130:CDS
AAAATCTGACCAGAACTGGA+TGG 0.669903 1_4:+53936029 Msa0170130:CDS
CGGAAGATTACAAAACCGGT+AGG 0.669981 1_4:-53938770 None:intergenic
GATTCAATACCAGTCATGAG+TGG 0.672442 1_4:-53938312 None:intergenic
TTCTCCAAGTGGAATCGCGG+TGG 0.673024 1_4:+53933146 Msa0170130:five_prime_UTR
GACCGGGTTCTCAGGCCAGG+AGG 0.684761 1_4:+53937233 Msa0170130:CDS
ATGGATATGAAAGCTAACAT+GGG 0.699127 1_4:+53938182 Msa0170130:CDS
AACCGGTAGGTCTAAGCACG+CGG 0.699582 1_4:-53938757 None:intergenic
CTTAAAGTTATATATGACAG+AGG 0.704000 1_4:+53938278 Msa0170130:CDS
GGATCAAAGCACTTCCCAAG+TGG 0.704431 1_4:+53939033 Msa0170130:three_prime_UTR
GACACCTTATCTATCAACTG+CGG 0.711012 1_4:+53935434 Msa0170130:CDS
TCAGCTAATAAATGTCGAGG+GGG 0.718230 1_4:+53934676 Msa0170130:exon
AAGAAATGAGTGATCTTGTG+GGG 0.720429 1_4:+53937318 Msa0170130:CDS
GAAAAGATAGCGTTTCCTGG+AGG 0.737306 1_4:+53936063 Msa0170130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAAAATGTAAAAATAATT+CGG - chr1_4:53933262-53933281 None:intergenic 10.0%
!! AAATTAAAATCATTAATAAG+AGG - chr1_4:53937992-53938011 None:intergenic 10.0%
!!! TTTTTTTTAGTTTGTTTTAG+TGG + chr1_4:53933749-53933768 Msa0170130:intron 15.0%
!!! TGATTATAACTTGTTATTAA+TGG + chr1_4:53933864-53933883 Msa0170130:intron 15.0%
!!! ATAAATCATGTTTCTTTTTA+TGG + chr1_4:53934076-53934095 Msa0170130:intron 15.0%
!!! TAAATCATGTTTCTTTTTAT+GGG + chr1_4:53934077-53934096 Msa0170130:intron 15.0%
!! AAAAAGTTTAAACTAAGATA+AGG - chr1_4:53934401-53934420 None:intergenic 15.0%
!!! ATAATTCTGATTTGAATTAT+TGG + chr1_4:53934550-53934569 Msa0170130:five_prime_UTR 15.0%
!! TGCTTAAAATTAAATGTAAA+TGG + chr1_4:53935156-53935175 Msa0170130:intron 15.0%
!! AAAAATGAAATAGTGATAAA+AGG - chr1_4:53936470-53936489 None:intergenic 15.0%
!!! TTTATCACTATTTCATTTTT+TGG + chr1_4:53936470-53936489 Msa0170130:intron 15.0%
!!! TAATTAAAGATTCTTTTTAG+AGG + chr1_4:53937757-53937776 Msa0170130:intron 15.0%
!! TAAAAAAAATGAAAATGCAA+TGG - chr1_4:53938988-53939007 None:intergenic 15.0%
!! TCAAGTTATTATTAAGAAAT+AGG + chr1_4:53939135-53939154 Msa0170130:three_prime_UTR 15.0%
!! ATAACTAAAATACAAACACT+TGG + chr1_4:53933545-53933564 Msa0170130:five_prime_UTR 20.0%
!!! TATTGTTTTGCATTGTTTTT+TGG + chr1_4:53933691-53933710 Msa0170130:intron 20.0%
!!! ATTGTTTTGCATTGTTTTTT+GGG + chr1_4:53933692-53933711 Msa0170130:intron 20.0%
!! TTTATTGTTAACATGATTCA+TGG + chr1_4:53933969-53933988 Msa0170130:intron 20.0%
!! ATAATTCAGGAAATCAAAAT+TGG - chr1_4:53934018-53934037 None:intergenic 20.0%
!!! AAATCATGTTTCTTTTTATG+GGG + chr1_4:53934078-53934097 Msa0170130:intron 20.0%
!!! AAGTTTTTAACCAAATACTT+TGG - chr1_4:53934227-53934246 None:intergenic 20.0%
!! TAGAATATGACAAATCATTA+AGG + chr1_4:53934823-53934842 Msa0170130:CDS 20.0%
!!! CTATTTTTGCTTTTGATATT+TGG + chr1_4:53935003-53935022 Msa0170130:intron 20.0%
!!! TATAATGTTTCTTCTTTTGA+AGG + chr1_4:53935369-53935388 Msa0170130:intron 20.0%
!! AAGATTAAAAATTGATCCAA+GGG - chr1_4:53935637-53935656 None:intergenic 20.0%
!! TAAGATTAAAAATTGATCCA+AGG - chr1_4:53935638-53935657 None:intergenic 20.0%
!! TTGTTAGAATAAATAGAAGT+TGG + chr1_4:53935755-53935774 Msa0170130:intron 20.0%
!! AAATAATACATATGTATCAG+AGG - chr1_4:53935901-53935920 None:intergenic 20.0%
!!! TATGTATTATTTTGAACTTC+TGG - chr1_4:53936296-53936315 None:intergenic 20.0%
!!! TTCTGTTTTTAGTACATTAA+CGG + chr1_4:53936316-53936335 Msa0170130:intron 20.0%
!! AATAGTGATAAAAGGAAAAA+GGG - chr1_4:53936462-53936481 None:intergenic 20.0%
!! AAATAGTGATAAAAGGAAAA+AGG - chr1_4:53936463-53936482 None:intergenic 20.0%
!!! TTTTATGTATTCTGTTTATC+TGG + chr1_4:53936840-53936859 Msa0170130:intron 20.0%
!! AACAATAATCTAAACAATGA+AGG + chr1_4:53936942-53936961 Msa0170130:CDS 20.0%
!!! TTTCTCTATAATTTCCTTTT+AGG + chr1_4:53937589-53937608 Msa0170130:intron 20.0%
!! TATGTATTCTATGATTTCTA+TGG + chr1_4:53937628-53937647 Msa0170130:intron 20.0%
!!! GCTTGTTATTTATAACATAA+AGG - chr1_4:53937788-53937807 None:intergenic 20.0%
!! CATAATATTCCTTATTGTAT+CGG - chr1_4:53938165-53938184 None:intergenic 20.0%
!! TATATAACTTTAAGTGTGTT+TGG - chr1_4:53938272-53938291 None:intergenic 20.0%
!!! AACTTCTAATTTTAGTAAAC+AGG - chr1_4:53938337-53938356 None:intergenic 20.0%
!! TATAAAATGTTGTCAAATAG+CGG - chr1_4:53938456-53938475 None:intergenic 20.0%
! AATTAGAGAAAAAGCTTACT+GGG - chr1_4:53933670-53933689 None:intergenic 25.0%
!!! ATTGTTTTTTGGGATTGTAA+TGG + chr1_4:53933702-53933721 Msa0170130:intron 25.0%
!!! ATCTGAAACATTTTACTATG+TGG + chr1_4:53933725-53933744 Msa0170130:intron 25.0%
! CCTTAGCAAAAATATAATTC+AGG - chr1_4:53934031-53934050 None:intergenic 25.0%
!!! CCTGAATTATATTTTTGCTA+AGG + chr1_4:53934028-53934047 Msa0170130:intron 25.0%
! TAAAAACCAAGTCAAAATGA+TGG - chr1_4:53934119-53934138 None:intergenic 25.0%
! TTGGATAAAGAAGTTTGAAT+TGG + chr1_4:53934354-53934373 Msa0170130:intron 25.0%
!!! TTTGAATTGGTCTCTTTTTT+TGG + chr1_4:53934367-53934386 Msa0170130:intron 25.0%
! GAAACAATAATCAGCAAATT+CGG - chr1_4:53934474-53934493 None:intergenic 25.0%
! TAATGATTAACCTGCAATTA+AGG - chr1_4:53934500-53934519 None:intergenic 25.0%
!! ATTGGTTTATTGTATGTGTA+TGG + chr1_4:53934759-53934778 Msa0170130:CDS 25.0%
! TATCAAAAGCAAAAATAGAG+TGG - chr1_4:53935001-53935020 None:intergenic 25.0%
!! ACTGATTTAGTTACTATATG+TGG - chr1_4:53935216-53935235 None:intergenic 25.0%
! ATTGTTTCCTGTATAATAAG+TGG + chr1_4:53935273-53935292 Msa0170130:intron 25.0%
! AGATTAAAAATTGATCCAAG+GGG - chr1_4:53935636-53935655 None:intergenic 25.0%
! GAAATATGTAAACTAATCCT+AGG - chr1_4:53935679-53935698 None:intergenic 25.0%
! GTTCCTATTTATTCAAGATT+AGG + chr1_4:53935728-53935747 Msa0170130:intron 25.0%
! ACTCCTAATCTTGAATAAAT+AGG - chr1_4:53935734-53935753 None:intergenic 25.0%
!!! AGTTATGGGTTTTAGTTAAA+AGG - chr1_4:53935853-53935872 None:intergenic 25.0%
!! ATCACATTTGTTGAAGTTAT+GGG - chr1_4:53935867-53935886 None:intergenic 25.0%
!! AATCACATTTGTTGAAGTTA+TGG - chr1_4:53935868-53935887 None:intergenic 25.0%
!!! ACATTTTCATTTGAAGTAGA+AGG - chr1_4:53936243-53936262 None:intergenic 25.0%
!! AGTTTTCCATTTTCATTTGA+TGG + chr1_4:53936269-53936288 Msa0170130:intron 25.0%
! TATATTATGCTACTAAGGTA+TGG - chr1_4:53936622-53936641 None:intergenic 25.0%
! ATGTCTAGTAATTATGAATC+AGG - chr1_4:53936645-53936664 None:intergenic 25.0%
! TTATAGCAATCATTTGTCAA+AGG - chr1_4:53937398-53937417 None:intergenic 25.0%
!! TTTTGTATTCTATTGCTCAT+AGG + chr1_4:53937558-53937577 Msa0170130:intron 25.0%
! TTTGTATTCTATTGCTCATA+GGG + chr1_4:53937559-53937578 Msa0170130:intron 25.0%
! TAATAAATCTTTAGCCAGAA+TGG - chr1_4:53937655-53937674 None:intergenic 25.0%
! GCTAAAGATTTATTATCCTT+TGG + chr1_4:53937660-53937679 Msa0170130:intron 25.0%
! CATTTAATACTCAATTCTCA+GGG - chr1_4:53937727-53937746 None:intergenic 25.0%
! TTGCATACTGAAATTTATGT+TGG + chr1_4:53937821-53937840 Msa0170130:intron 25.0%
! TTCAAATGAAATGTTCGAAA+AGG + chr1_4:53937939-53937958 Msa0170130:CDS 25.0%
! AAATCAAATCCGATACAATA+AGG + chr1_4:53938153-53938172 Msa0170130:CDS 25.0%
! CGATACAATAAGGAATATTA+TGG + chr1_4:53938163-53938182 Msa0170130:CDS 25.0%
! CTTAAAGTTATATATGACAG+AGG + chr1_4:53938278-53938297 Msa0170130:CDS 25.0%
!! TGATTTGCAATTGACAATAT+TGG - chr1_4:53938378-53938397 None:intergenic 25.0%
! TTATCATACAGAAGAAATTG+TGG + chr1_4:53938909-53938928 Msa0170130:CDS 25.0%
! CAAAAATGAGAATCAAAAGA+AGG - chr1_4:53939105-53939124 None:intergenic 25.0%
!!! TCTTTTGATTCTCATTTTTG+AGG + chr1_4:53939105-53939124 Msa0170130:three_prime_UTR 25.0%
! TTGTACTATTCTGTTTAGTA+TGG + chr1_4:53939346-53939365 Msa0170130:three_prime_UTR 25.0%
!!! ATTACTTTTTTTCCTCGAGA+CGG + chr1_4:53933186-53933205 Msa0170130:intron 30.0%
AAATTGAACTCACAACTTTG+CGG + chr1_4:53933309-53933328 Msa0170130:five_prime_UTR 30.0%
! GATTAAGGTAGCAACTTTTA+TGG - chr1_4:53933407-53933426 None:intergenic 30.0%
!! TTGTTTTTCTTTGACCCAAT+TGG + chr1_4:53933631-53933650 Msa0170130:five_prime_UTR 30.0%
! GTTTAGCTTAGAATCCAATT+GGG - chr1_4:53933648-53933667 None:intergenic 30.0%
GAATTAGAGAAAAAGCTTAC+TGG - chr1_4:53933671-53933690 None:intergenic 30.0%
! GTTCTTGTTGTGAATTATGA+TGG + chr1_4:53933771-53933790 Msa0170130:intron 30.0%
CATTCAATTCAATACATCAG+TGG - chr1_4:53933803-53933822 None:intergenic 30.0%
! AACAACACTAGCATTGAAAA+AGG - chr1_4:53933896-53933915 None:intergenic 30.0%
! GGTAGTTCTGTTTAATTGTA+TGG + chr1_4:53933934-53933953 Msa0170130:intron 30.0%
GAAATCAAAATTGGCAATTG+AGG - chr1_4:53934009-53934028 None:intergenic 30.0%
! TTTCTTTTTATGGGGTGATT+TGG + chr1_4:53934086-53934105 Msa0170130:intron 30.0%
! TTGTATTATTTTCCCTCCTA+TGG + chr1_4:53934191-53934210 Msa0170130:intron 30.0%
GAAATGAATGAAGAATCTTG+TGG + chr1_4:53934247-53934266 Msa0170130:intron 30.0%
AATGACTTTAGTTACACTCT+AGG + chr1_4:53934303-53934322 Msa0170130:intron 30.0%
CTTCTTTATCCAATGCAAAT+TGG - chr1_4:53934347-53934366 None:intergenic 30.0%
AACGTTTAATAAAGATCTGC+AGG + chr1_4:53934430-53934449 Msa0170130:intron 30.0%
! TCAAGCAAGATCCTTTTAAT+CGG + chr1_4:53934626-53934645 Msa0170130:five_prime_UTR 30.0%
! AGATCCTTTTAATCGGAATT+TGG + chr1_4:53934633-53934652 Msa0170130:five_prime_UTR 30.0%
AGATCCAAATTCCGATTAAA+AGG - chr1_4:53934640-53934659 None:intergenic 30.0%
TTTCAGCTAATAAATGTCGA+GGG + chr1_4:53934674-53934693 Msa0170130:exon 30.0%
GACAAATCATTAAGGAAACT+CGG + chr1_4:53934831-53934850 Msa0170130:CDS 30.0%
ACAAATCATTAAGGAAACTC+GGG + chr1_4:53934832-53934851 Msa0170130:CDS 30.0%
GATGAATCTTCATCAAGTTT+CGG + chr1_4:53934897-53934916 Msa0170130:CDS 30.0%
ATGAATCTTCATCAAGTTTC+GGG + chr1_4:53934898-53934917 Msa0170130:CDS 30.0%
ATCTTACAAAGAGACTTACA+GGG - chr1_4:53934962-53934981 None:intergenic 30.0%
AATCTTACAAAGAGACTTAC+AGG - chr1_4:53934963-53934982 None:intergenic 30.0%
!!! GTAGAGTTTTGTTCAATTTC+AGG + chr1_4:53935069-53935088 Msa0170130:intron 30.0%
! TTCAGATGCAGCAATATTTT+TGG + chr1_4:53935320-53935339 Msa0170130:intron 30.0%
!!! TATGGGTTTTAGTTAAAAGG+AGG - chr1_4:53935850-53935869 None:intergenic 30.0%
TGATAAGTACATTGCATCAA+TGG + chr1_4:53936110-53936129 Msa0170130:CDS 30.0%
ATGTCTGAAAACATTCTCAA+GGG - chr1_4:53936171-53936190 None:intergenic 30.0%
! TTGAGAATGTTTTCAGACAT+GGG + chr1_4:53936171-53936190 Msa0170130:intron 30.0%
TGAAGTAGAAGGAATATGTA+CGG - chr1_4:53936232-53936251 None:intergenic 30.0%
TACAGTGGCGATAAAATATA+AGG - chr1_4:53936413-53936432 None:intergenic 30.0%
AAATGACATAGTTAGATGTG+AGG - chr1_4:53936511-53936530 None:intergenic 30.0%
TCAGGTATATTATGCTACTA+AGG - chr1_4:53936627-53936646 None:intergenic 30.0%
TATGAACAAGCAAAATGCAT+AGG - chr1_4:53936696-53936715 None:intergenic 30.0%
GAGTCATTATCATATCATGT+TGG + chr1_4:53936804-53936823 Msa0170130:intron 30.0%
TAAACAATGAAGGAAGATTG+CGG + chr1_4:53936952-53936971 Msa0170130:CDS 30.0%
TAATGATATCAGATGCAAGA+AGG - chr1_4:53937022-53937041 None:intergenic 30.0%
TGATATCATTACAATGTCCT+TGG + chr1_4:53937031-53937050 Msa0170130:CDS 30.0%
!! TGATTTTGATGCACATCATT+TGG - chr1_4:53937059-53937078 None:intergenic 30.0%
ATGAAGAGAATCTAAGGATA+TGG + chr1_4:53937294-53937313 Msa0170130:CDS 30.0%
AAAGAAATGAGTGATCTTGT+GGG + chr1_4:53937317-53937336 Msa0170130:CDS 30.0%
AAAAGAACCAAACTGTTATC+TGG + chr1_4:53937366-53937385 Msa0170130:CDS 30.0%
TGCTATAAAAAAAGAGAACC+TGG + chr1_4:53937410-53937429 Msa0170130:CDS 30.0%
!!! TGCAGTTTTTGGAGTAAATA+TGG + chr1_4:53937472-53937491 Msa0170130:CDS 30.0%
TTGTATTCTATTGCTCATAG+GGG + chr1_4:53937560-53937579 Msa0170130:intron 30.0%
CATTGACAGATAAACCTAAA+AGG - chr1_4:53937606-53937625 None:intergenic 30.0%
CCATTTAATACTCAATTCTC+AGG - chr1_4:53937728-53937747 None:intergenic 30.0%
CCTGAGAATTGAGTATTAAA+TGG + chr1_4:53937725-53937744 Msa0170130:intron 30.0%
AGTATGCAAGTTTCAAATCA+CGG - chr1_4:53937810-53937829 None:intergenic 30.0%
ATAAAATGTAAGCCAACAGT+TGG - chr1_4:53938072-53938091 None:intergenic 30.0%
! TTGGCTTACATTTTATCTTG+TGG + chr1_4:53938076-53938095 Msa0170130:intron 30.0%
! TACATTTTATCTTGTGGTAC+AGG + chr1_4:53938082-53938101 Msa0170130:intron 30.0%
TATGGATATGAAAGCTAACA+TGG + chr1_4:53938181-53938200 Msa0170130:CDS 30.0%
ATGGATATGAAAGCTAACAT+GGG + chr1_4:53938182-53938201 Msa0170130:CDS 30.0%
TCTTAAAGACAAGGATGTAT+GGG + chr1_4:53938220-53938239 Msa0170130:CDS 30.0%
TGCAATTGACAATATTGGAA+TGG - chr1_4:53938373-53938392 None:intergenic 30.0%
TTCTTCACGAAATCAATCAT+TGG - chr1_4:53938806-53938825 None:intergenic 30.0%
CTAGTTCAATAATCAAGACA+TGG + chr1_4:53939215-53939234 Msa0170130:three_prime_UTR 30.0%
AAAGTTGCTACCTTAATCAC+AGG + chr1_4:53933409-53933428 Msa0170130:intron 35.0%
AGCAAATTGACCTGTGATTA+AGG - chr1_4:53933422-53933441 None:intergenic 35.0%
! AACTGTTGCTACACACTTTT+AGG + chr1_4:53933451-53933470 Msa0170130:five_prime_UTR 35.0%
CACCTTAAATTTCACACTGT+CGG + chr1_4:53933487-53933506 Msa0170130:five_prime_UTR 35.0%
AACCGACAGTGTGAAATTTA+AGG - chr1_4:53933492-53933511 None:intergenic 35.0%
! GGTTTAGCTTAGAATCCAAT+TGG - chr1_4:53933649-53933668 None:intergenic 35.0%
! GTTTTCCATTATGCTAGATC+TGG + chr1_4:53933913-53933932 Msa0170130:intron 35.0%
AACTACCAGATCTAGCATAA+TGG - chr1_4:53933921-53933940 None:intergenic 35.0%
!! TTTTATGGGGTGATTTGGAT+TGG + chr1_4:53934091-53934110 Msa0170130:intron 35.0%
!!! TTGGATCCATCATTTTGACT+TGG + chr1_4:53934110-53934129 Msa0170130:intron 35.0%
GTTAGATCACCAATTTGCAT+TGG + chr1_4:53934335-53934354 Msa0170130:intron 35.0%
TTGTTTCCTTCCTTAATTGC+AGG + chr1_4:53934487-53934506 Msa0170130:intron 35.0%
GATTAACCTGCAATTAAGGA+AGG - chr1_4:53934496-53934515 None:intergenic 35.0%
AGTCAGTGTATTGTATTGTG+AGG + chr1_4:53934520-53934539 Msa0170130:five_prime_UTR 35.0%
GTTTCAGCTAATAAATGTCG+AGG + chr1_4:53934673-53934692 Msa0170130:exon 35.0%
TTCAGCTAATAAATGTCGAG+GGG + chr1_4:53934675-53934694 Msa0170130:exon 35.0%
GGTTTATTGTATGTGTATGG+TGG + chr1_4:53934762-53934781 Msa0170130:CDS 35.0%
! ACTACTTTGAGAACCAAAGA+TGG - chr1_4:53934790-53934809 None:intergenic 35.0%
!! ATCTTTGGTTCTCAAAGTAG+TGG + chr1_4:53934789-53934808 Msa0170130:CDS 35.0%
AAACTCGGGTCATCATATTT+GGG + chr1_4:53934846-53934865 Msa0170130:CDS 35.0%
! TCTTTGTAAGATTAGCCACA+AGG + chr1_4:53934970-53934989 Msa0170130:intron 35.0%
AAAACTCTACACAAGAGACT+TGG - chr1_4:53935059-53935078 None:intergenic 35.0%
AACTATTGTACACATGAGCT+TGG - chr1_4:53935098-53935117 None:intergenic 35.0%
ATTGTGGCCACTTATTATAC+AGG - chr1_4:53935283-53935302 None:intergenic 35.0%
GATGTGCATAAACTTGATTG+TGG - chr1_4:53935299-53935318 None:intergenic 35.0%
! ATAAGGTGTCTATCTAAGCA+AGG - chr1_4:53935424-53935443 None:intergenic 35.0%
CTTCTAACAACATCAACTCT+TGG - chr1_4:53935570-53935589 None:intergenic 35.0%
AATTTCTAAGCTTATCCCCT+TGG + chr1_4:53935618-53935637 Msa0170130:intron 35.0%
ATGAAAAATCTGACCAGAAC+TGG + chr1_4:53936025-53936044 Msa0170130:CDS 35.0%
CATGTCTGAAAACATTCTCA+AGG - chr1_4:53936172-53936191 None:intergenic 35.0%
! CTTGAGAATGTTTTCAGACA+TGG + chr1_4:53936170-53936189 Msa0170130:intron 35.0%
TCTGGACCATCAAATGAAAA+TGG - chr1_4:53936278-53936297 None:intergenic 35.0%
! TGCATGGTTTGAAGTGTATT+TGG + chr1_4:53936343-53936362 Msa0170130:intron 35.0%
TAGGAGAGAAACAAATACAG+TGG - chr1_4:53936428-53936447 None:intergenic 35.0%
AAAAAGGGAGGAGAAAGAAT+AGG - chr1_4:53936447-53936466 None:intergenic 35.0%
AGTGATAAAAGGAAAAAGGG+AGG - chr1_4:53936459-53936478 None:intergenic 35.0%
TAGAAGCTTAAGCTACAAGA+TGG - chr1_4:53936588-53936607 None:intergenic 35.0%
! TTTTGCTTGTTCATACTACG+AGG + chr1_4:53936701-53936720 Msa0170130:intron 35.0%
TTTGCTTGTTCATACTACGA+GGG + chr1_4:53936702-53936721 Msa0170130:intron 35.0%
!! GAAATGCTTGAGGTATTGAA+TGG - chr1_4:53936739-53936758 None:intergenic 35.0%
ACAACATTTCGAAATGCTTG+AGG - chr1_4:53936749-53936768 None:intergenic 35.0%
TGTCCTCGAAGATTTAGATA+TGG + chr1_4:53936766-53936785 Msa0170130:intron 35.0%
TGACCATATCTAAATCTTCG+AGG - chr1_4:53936772-53936791 None:intergenic 35.0%
TGTTCGAAAAGTTAAGCATC+TGG - chr1_4:53936926-53936945 None:intergenic 35.0%
CAAGTTCAAAAGATCTGCTT+GGG - chr1_4:53937151-53937170 None:intergenic 35.0%
TACTACTTCTTGAACTAGAC+CGG + chr1_4:53937216-53937235 Msa0170130:CDS 35.0%
GAAAGAAATGAGTGATCTTG+TGG + chr1_4:53937316-53937335 Msa0170130:CDS 35.0%
AAGAAATGAGTGATCTTGTG+GGG + chr1_4:53937318-53937337 Msa0170130:CDS 35.0%
! GTTTTTGCCAGATAACAGTT+TGG - chr1_4:53937376-53937395 None:intergenic 35.0%
TTTACTCCAAAAACTGCATC+AGG - chr1_4:53937470-53937489 None:intergenic 35.0%
TGTATTCTATTGCTCATAGG+GGG + chr1_4:53937561-53937580 Msa0170130:intron 35.0%
ATGATTTCTATGGTCCATTC+TGG + chr1_4:53937638-53937657 Msa0170130:intron 35.0%
TTATTATCCTTTGGCTGCAA+TGG + chr1_4:53937669-53937688 Msa0170130:intron 35.0%
! GGATTGTTTGATTTCCATGA+AGG + chr1_4:53937690-53937709 Msa0170130:intron 35.0%
TCAGATGACAACAAAGCTAA+AGG + chr1_4:53937850-53937869 Msa0170130:intron 35.0%
TAGCCAAAATCAGCTAATCT+AGG - chr1_4:53937919-53937938 None:intergenic 35.0%
TGAAATGTTCGAAAAGGACA+CGG + chr1_4:53937945-53937964 Msa0170130:CDS 35.0%
CATTTAGCTAAACCAACTGT+TGG + chr1_4:53938057-53938076 Msa0170130:intron 35.0%
!! GAGAGAGAGTTGATAAATAC+TGG + chr1_4:53938114-53938133 Msa0170130:CDS 35.0%
AAAGCTAACATGGGTTCATT+TGG + chr1_4:53938191-53938210 Msa0170130:CDS 35.0%
CTCTTAAAGACAAGGATGTA+TGG + chr1_4:53938219-53938238 Msa0170130:CDS 35.0%
ATGAATGTTGTACCTCAAGA+TGG + chr1_4:53938245-53938264 Msa0170130:CDS 35.0%
! TTTCTGCTGTCAGTTTTTGT+TGG + chr1_4:53938550-53938569 Msa0170130:intron 35.0%
ATCTCAATCAATAGATCCTC+TGG - chr1_4:53938734-53938753 None:intergenic 35.0%
! AGAGGATCTATTGATTGAGA+TGG + chr1_4:53938733-53938752 Msa0170130:CDS 35.0%
ATCACGGAAGATTACAAAAC+CGG - chr1_4:53938777-53938796 None:intergenic 35.0%
! CAATCATTGGCTGTTTATCA+CGG - chr1_4:53938793-53938812 None:intergenic 35.0%
AAGAAATTGTGGCTAACTAG+TGG + chr1_4:53938920-53938939 Msa0170130:CDS 35.0%
TATTATCTGCTATTGCTGCA+AGG + chr1_4:53939011-53939030 Msa0170130:three_prime_UTR 35.0%
ATTATCTGCTATTGCTGCAA+GGG + chr1_4:53939012-53939031 Msa0170130:three_prime_UTR 35.0%
AAATAGGCATCACGCTTTAT+AGG + chr1_4:53939151-53939170 Msa0170130:three_prime_UTR 35.0%
! AAAATTTTGCTGCCTGCATT+TGG + chr1_4:53939180-53939199 Msa0170130:three_prime_UTR 35.0%
! AAATTTTGCTGCCTGCATTT+GGG + chr1_4:53939181-53939200 Msa0170130:three_prime_UTR 35.0%
CTTACATAATACCCAAATGC+AGG - chr1_4:53939195-53939214 None:intergenic 35.0%
!! GTTGCTACACACTTTTAGGT+TGG + chr1_4:53933455-53933474 Msa0170130:five_prime_UTR 40.0%
CGACAGTGTGAAATTTAAGG+TGG - chr1_4:53933489-53933508 None:intergenic 40.0%
! AGTGTCTGGTCCAAAGTATT+TGG + chr1_4:53934214-53934233 Msa0170130:intron 40.0%
!!! TGGGTTTTGGATTGCAGATT+TGG + chr1_4:53934589-53934608 Msa0170130:five_prime_UTR 40.0%
TCAGCTAATAAATGTCGAGG+GGG + chr1_4:53934676-53934695 Msa0170130:exon 40.0%
! TGTGTTGCGACGGTTTTTAT+TGG + chr1_4:53934741-53934760 Msa0170130:CDS 40.0%
GAAACTCGGGTCATCATATT+TGG + chr1_4:53934845-53934864 Msa0170130:CDS 40.0%
AGACTTACAGGGAAACTCTT+TGG - chr1_4:53934951-53934970 None:intergenic 40.0%
AATAGAGTGGATGTTCCTTG+TGG - chr1_4:53934988-53935007 None:intergenic 40.0%
GGTTTGTGATGATCGACATT+CGG + chr1_4:53935390-53935409 Msa0170130:intron 40.0%
GACACCTTATCTATCAACTG+CGG + chr1_4:53935434-53935453 Msa0170130:CDS 40.0%
!! TCATCCGCAGTTGATAGATA+AGG - chr1_4:53935441-53935460 None:intergenic 40.0%
CTATCAACTGCGGATGAAAT+TGG + chr1_4:53935444-53935463 Msa0170130:CDS 40.0%
GAAATTGGACTTGTCTGTGA+TGG + chr1_4:53935459-53935478 Msa0170130:CDS 40.0%
AGCATCTCAGATTATCTCCT+AGG + chr1_4:53935659-53935678 Msa0170130:intron 40.0%
ATTAGGACATGGCAAATGCT+CGG - chr1_4:53935928-53935947 None:intergenic 40.0%
TTGCCATGTCCTAATATTGC+AGG + chr1_4:53935933-53935952 Msa0170130:intron 40.0%
TAACAGGGACCTGCAATATT+AGG - chr1_4:53935945-53935964 None:intergenic 40.0%
!! TGCTTTTTGGCCACTTAACA+GGG - chr1_4:53935960-53935979 None:intergenic 40.0%
! GGTCAGATTTTTCATGTGCA+AGG - chr1_4:53936020-53936039 None:intergenic 40.0%
AAAATCTGACCAGAACTGGA+TGG + chr1_4:53936029-53936048 Msa0170130:CDS 40.0%
!!! CTTTTTCAACCATCCAGTTC+TGG - chr1_4:53936041-53936060 None:intergenic 40.0%
CAGAACTGGATGGTTGAAAA+AGG + chr1_4:53936039-53936058 Msa0170130:CDS 40.0%
! GGTGGGACTCATTTTCATTA+TGG + chr1_4:53936084-53936103 Msa0170130:CDS 40.0%
GTACATTAACGGAACATGCA+TGG + chr1_4:53936327-53936346 Msa0170130:intron 40.0%
CATATCATGTTGGACAATGC+TGG + chr1_4:53936814-53936833 Msa0170130:intron 40.0%
! CTGGATTTGCTTGCATTTCA+TGG + chr1_4:53936859-53936878 Msa0170130:intron 40.0%
TGGCAATGCAAAGTTGAAAC+TGG - chr1_4:53936906-53936925 None:intergenic 40.0%
TCAAAAGATCTGCTTGGGTA+TGG - chr1_4:53937146-53937165 None:intergenic 40.0%
GCAAGTTCAAAAGATCTGCT+TGG - chr1_4:53937152-53937171 None:intergenic 40.0%
GTTCTCGTTGTCGAATTGAT+TGG + chr1_4:53937177-53937196 Msa0170130:CDS 40.0%
!! ATTGATTGGCTTCAGAGAGA+TGG + chr1_4:53937191-53937210 Msa0170130:CDS 40.0%
ACTACTTCTTGAACTAGACC+GGG + chr1_4:53937217-53937236 Msa0170130:CDS 40.0%
CTCAGGATGAAGAGAATCTA+AGG + chr1_4:53937288-53937307 Msa0170130:CDS 40.0%
GTATTCTATTGCTCATAGGG+GGG + chr1_4:53937562-53937581 Msa0170130:intron 40.0%
AAACAATCCATTGCAGCCAA+AGG - chr1_4:53937679-53937698 None:intergenic 40.0%
GACAACAAAGCTAAAGGTAG+TGG + chr1_4:53937856-53937875 Msa0170130:CDS 40.0%
AAATCAGCTAATCTAGGAGG+AGG - chr1_4:53937913-53937932 None:intergenic 40.0%
CCAAAATCAGCTAATCTAGG+AGG - chr1_4:53937916-53937935 None:intergenic 40.0%
!! CCTCCTAGATTAGCTGATTT+TGG + chr1_4:53937913-53937932 Msa0170130:CDS 40.0%
ATCTTGTGGTACAGGAACTA+TGG + chr1_4:53938090-53938109 Msa0170130:intron 40.0%
ATATATGACAGAGGCCTCAT+AGG + chr1_4:53938287-53938306 Msa0170130:CDS 40.0%
GATTCAATACCAGTCATGAG+TGG - chr1_4:53938315-53938334 None:intergenic 40.0%
AACTGACAGCAGAAAATGCA+CGG - chr1_4:53938545-53938564 None:intergenic 40.0%
CAAGATGCATCGTGATAGTT+AGG - chr1_4:53938618-53938637 None:intergenic 40.0%
TATCACGATGCATCTTGAAC+AGG + chr1_4:53938621-53938640 Msa0170130:intron 40.0%
AAGCATTCTCAACATACCCT+CGG + chr1_4:53938648-53938667 Msa0170130:CDS 40.0%
AGTACTTAACTGCTTTGCAC+TGG + chr1_4:53938825-53938844 Msa0170130:CDS 40.0%
GTACTTAACTGCTTTGCACT+GGG + chr1_4:53938826-53938845 Msa0170130:CDS 40.0%
CGATTCCACTTGGAGAAAGT+GGG - chr1_4:53933143-53933162 None:intergenic 45.0%
ACTTTCTCCAAGTGGAATCG+CGG + chr1_4:53933143-53933162 Msa0170130:five_prime_UTR 45.0%
!! CAGATTTGGCTCTGAATGTC+TGG + chr1_4:53934603-53934622 Msa0170130:five_prime_UTR 45.0%
AAAAACCGTCGCAACACAGA+TGG - chr1_4:53934739-53934758 None:intergenic 45.0%
!! GTGTATGGTGGATCCATCTT+TGG + chr1_4:53934774-53934793 Msa0170130:CDS 45.0%
ATCTTCATCAAGTTTCGGGC+AGG + chr1_4:53934902-53934921 Msa0170130:CDS 45.0%
TTTACCTTGTATCCTGCTGG+AGG - chr1_4:53935541-53935560 None:intergenic 45.0%
AGCTTTACCTTGTATCCTGC+TGG - chr1_4:53935544-53935563 None:intergenic 45.0%
GGACCTGCAATATTAGGACA+TGG - chr1_4:53935939-53935958 None:intergenic 45.0%
TATTGCAGGTCCCTGTTAAG+TGG + chr1_4:53935947-53935966 Msa0170130:intron 45.0%
!!! CTGCTTTTTGGCCACTTAAC+AGG - chr1_4:53935961-53935980 None:intergenic 45.0%
!! CACACCTCATCTCTGCTTTT+TGG - chr1_4:53935973-53935992 None:intergenic 45.0%
CAAAAAGCAGAGATGAGGTG+TGG + chr1_4:53935971-53935990 Msa0170130:CDS 45.0%
TCATGTGCAAGGTGAGTATG+CGG - chr1_4:53936009-53936028 None:intergenic 45.0%
GGTGAAAAGATAGCGTTTCC+TGG + chr1_4:53936060-53936079 Msa0170130:CDS 45.0%
GAAAAGATAGCGTTTCCTGG+AGG + chr1_4:53936063-53936082 Msa0170130:CDS 45.0%
GGCAAATGTAAGTCTGCATC+TGG + chr1_4:53936131-53936150 Msa0170130:intron 45.0%
!! AAGTCTGCATCTGGCTTTAC+TGG + chr1_4:53936140-53936159 Msa0170130:intron 45.0%
TTTCAGACATGGGAGTTCTG+TGG + chr1_4:53936181-53936200 Msa0170130:intron 45.0%
TTCAGACATGGGAGTTCTGT+GGG + chr1_4:53936182-53936201 Msa0170130:intron 45.0%
!! ATGCACATCATTTGGTGCCA+AGG - chr1_4:53937051-53937070 None:intergenic 45.0%
ATCCAATTTGCCCTCGAAAG+AGG + chr1_4:53937080-53937099 Msa0170130:CDS 45.0%
TTCCTCTTTCGAGGGCAAAT+TGG - chr1_4:53937085-53937104 None:intergenic 45.0%
AGAGGAATTCCGGCATATCT+TGG + chr1_4:53937098-53937117 Msa0170130:CDS 45.0%
GAGTATGCGAAATAACCTCC+TGG - chr1_4:53937251-53937270 None:intergenic 45.0%
TCATCCTGAGCATATGCTTC+TGG - chr1_4:53937278-53937297 None:intergenic 45.0%
! GCAGATCCTGATGCAGTTTT+TGG + chr1_4:53937461-53937480 Msa0170130:CDS 45.0%
GAGTACTCACGTTCACTGTA+AGG - chr1_4:53937512-53937531 None:intergenic 45.0%
GGGTCATTCTGTTTCCTTCA+TGG - chr1_4:53937707-53937726 None:intergenic 45.0%
TGGAGCTGCTCTTAAAGACA+AGG + chr1_4:53938211-53938230 Msa0170130:CDS 45.0%
AGTGTGTTTGGTCCATCTTG+AGG - chr1_4:53938260-53938279 None:intergenic 45.0%
TTGTCAAATAGCGGTTGCAG+TGG - chr1_4:53938447-53938466 None:intergenic 45.0%
CTTACGACTTACTCCATGCA+TGG + chr1_4:53938672-53938691 Msa0170130:CDS 45.0%
GAAGAAAGATTGCAGTCCAG+AGG + chr1_4:53938715-53938734 Msa0170130:CDS 45.0%
CGGAAGATTACAAAACCGGT+AGG - chr1_4:53938773-53938792 None:intergenic 45.0%
GCTAACTAGTGGAAGCTTCA+GGG + chr1_4:53938931-53938950 Msa0170130:CDS 45.0%
TGCTTACTGCTTCACCACTT+GGG - chr1_4:53939050-53939069 None:intergenic 45.0%
TTGCTTACTGCTTCACCACT+TGG - chr1_4:53939051-53939070 None:intergenic 45.0%
GCAAACCCACTTTCTCCAAG+TGG + chr1_4:53933135-53933154 Msa0170130:five_prime_UTR 50.0%
GCGATTCCACTTGGAGAAAG+TGG - chr1_4:53933144-53933163 None:intergenic 50.0%
TTTACCACCGCGATTCCACT+TGG - chr1_4:53933153-53933172 None:intergenic 50.0%
CTCTGATGAATTCCGTCTCG+AGG - chr1_4:53933201-53933220 None:intergenic 50.0%
! TTTCCCTCCTATGGAGTGTC+TGG + chr1_4:53934200-53934219 Msa0170130:intron 50.0%
CTTTGGACCAGACACTCCAT+AGG - chr1_4:53934210-53934229 None:intergenic 50.0%
!! TTGGTGTTGCGACGTTCAGT+TGG + chr1_4:53934569-53934588 Msa0170130:five_prime_UTR 50.0%
!! TGGTGTTGCGACGTTCAGTT+GGG + chr1_4:53934570-53934589 Msa0170130:five_prime_UTR 50.0%
! TGCGACGTTCAGTTGGGTTT+TGG + chr1_4:53934576-53934595 Msa0170130:five_prime_UTR 50.0%
TGCTTCCATCTGTGTTGCGA+CGG + chr1_4:53934731-53934750 Msa0170130:CDS 50.0%
CGGGTCATCATATTTGGGTG+CGG + chr1_4:53934851-53934870 Msa0170130:CDS 50.0%
GGTGCGGATGATGACAATGA+TGG + chr1_4:53934867-53934886 Msa0170130:CDS 50.0%
ATCAAGTTTCGGGCAGGTTG+AGG + chr1_4:53934908-53934927 Msa0170130:CDS 50.0%
GACATTGTCCTCCTGCAGAA+AGG + chr1_4:53935494-53935513 Msa0170130:CDS 50.0%
CAATTGTAGCGCCTTTCTGC+AGG - chr1_4:53935508-53935527 None:intergenic 50.0%
GTGGCCAAAAAGCAGAGATG+AGG + chr1_4:53935966-53935985 Msa0170130:CDS 50.0%
CATGTGCAAGGTGAGTATGC+GGG - chr1_4:53936008-53936027 None:intergenic 50.0%
AAGATAGCGTTTCCTGGAGG+TGG + chr1_4:53936066-53936085 Msa0170130:CDS 50.0%
AGATAGCGTTTCCTGGAGGT+GGG + chr1_4:53936067-53936086 Msa0170130:CDS 50.0%
TGAAAATGAGTCCCACCTCC+AGG - chr1_4:53936081-53936100 None:intergenic 50.0%
TTGCGGACAGTGCTTGATGT+TGG + chr1_4:53936969-53936988 Msa0170130:CDS 50.0%
! ACAGTGCTTGATGTTGGCTG+TGG + chr1_4:53936975-53936994 Msa0170130:CDS 50.0%
!! GGCTGTGGTGTTGCAAGTTT+CGG + chr1_4:53936990-53937009 Msa0170130:CDS 50.0%
!! TGTGGTGTTGCAAGTTTCGG+AGG + chr1_4:53936993-53937012 Msa0170130:CDS 50.0%
!! GTGGTGTTGCAAGTTTCGGA+GGG + chr1_4:53936994-53937013 Msa0170130:CDS 50.0%
TGCCCTCGAAAGAGGAATTC+CGG + chr1_4:53937088-53937107 Msa0170130:CDS 50.0%
TGCCGGAATTCCTCTTTCGA+GGG - chr1_4:53937093-53937112 None:intergenic 50.0%
ATGCCGGAATTCCTCTTTCG+AGG - chr1_4:53937094-53937113 None:intergenic 50.0%
! TCCGGCATATCTTGGTGTGT+TGG + chr1_4:53937106-53937125 Msa0170130:CDS 50.0%
CCCAACACACCAAGATATGC+CGG - chr1_4:53937110-53937129 None:intergenic 50.0%
! CCGGCATATCTTGGTGTGTT+GGG + chr1_4:53937107-53937126 Msa0170130:CDS 50.0%
TTGAACTAGACCGGGTTCTC+AGG + chr1_4:53937225-53937244 Msa0170130:CDS 50.0%
! GTCTCCAGAAGCATATGCTC+AGG + chr1_4:53937271-53937290 Msa0170130:CDS 50.0%
ATCTTGTGGGGCGTATGTGT+TGG + chr1_4:53937330-53937349 Msa0170130:CDS 50.0%
! AAGGTAGTGGCTTAGCTCCA+TGG + chr1_4:53937869-53937888 Msa0170130:CDS 50.0%
AGCTAATCTAGGAGGAGGAC+TGG - chr1_4:53937908-53937927 None:intergenic 50.0%
GGAGTAAGTCGTAAGTCCGA+GGG - chr1_4:53938667-53938686 None:intergenic 50.0%
TGGAGTAAGTCGTAAGTCCG+AGG - chr1_4:53938668-53938687 None:intergenic 50.0%
CAGACAAGACAGTCCATGCA+TGG - chr1_4:53938688-53938707 None:intergenic 50.0%
AGCAGTTGCAACCGCAGATT+CGG + chr1_4:53938850-53938869 Msa0170130:CDS 50.0%
AGAGTCAGAACCCGAATCTG+CGG - chr1_4:53938864-53938883 None:intergenic 50.0%
! TTCGGGTTCTGACTCTGTTC+AGG + chr1_4:53938868-53938887 Msa0170130:CDS 50.0%
GGCTAACTAGTGGAAGCTTC+AGG + chr1_4:53938930-53938949 Msa0170130:CDS 50.0%
! GGATCAAAGCACTTCCCAAG+TGG + chr1_4:53939033-53939052 Msa0170130:three_prime_UTR 50.0%
TTCTCCAAGTGGAATCGCGG+TGG + chr1_4:53933146-53933165 Msa0170130:five_prime_UTR 55.0%
GGACCAGACACTCCATAGGA+GGG - chr1_4:53934206-53934225 None:intergenic 55.0%
TGGACCAGACACTCCATAGG+AGG - chr1_4:53934207-53934226 None:intergenic 55.0%
ATGTCGAGGGGGAGATCTGA+TGG + chr1_4:53934687-53934706 Msa0170130:CDS 55.0%
TGTCGAGGGGGAGATCTGAT+GGG + chr1_4:53934688-53934707 Msa0170130:CDS 55.0%
! AAGTTTCGGGCAGGTTGAGG+AGG + chr1_4:53934911-53934930 Msa0170130:CDS 55.0%
TTGTAGCGCCTTTCTGCAGG+AGG - chr1_4:53935505-53935524 None:intergenic 55.0%
TGCTTGATTCCACCTCCAGC+AGG + chr1_4:53935526-53935545 Msa0170130:CDS 55.0%
TCCACCTCCAGCAGGATACA+AGG + chr1_4:53935534-53935553 Msa0170130:CDS 55.0%
ACCTTGTATCCTGCTGGAGG+TGG - chr1_4:53935538-53935557 None:intergenic 55.0%
CGTCAGACTGGCATAGAGGA+GGG - chr1_4:53937442-53937461 None:intergenic 55.0%
TCTGCGTCAGACTGGCATAG+AGG - chr1_4:53937446-53937465 None:intergenic 55.0%
CATCAGGATCTGCGTCAGAC+TGG - chr1_4:53937454-53937473 None:intergenic 55.0%
CTGGTCAATCTTGCAGGCCA+TGG - chr1_4:53937889-53937908 None:intergenic 55.0%
!! GGAGGACTGGTCAATCTTGC+AGG - chr1_4:53937895-53937914 None:intergenic 55.0%
AGTCATGAGTGGCGCCTATG+AGG - chr1_4:53938304-53938323 None:intergenic 55.0%
TCATAGGCGCCACTCATGAC+TGG + chr1_4:53938303-53938322 Msa0170130:CDS 55.0%
AACCGGTAGGTCTAAGCACG+CGG - chr1_4:53938760-53938779 None:intergenic 55.0%
GCAGTTGCAACCGCAGATTC+GGG + chr1_4:53938851-53938870 Msa0170130:CDS 55.0%
! TTTCGGGCAGGTTGAGGAGG+AGG + chr1_4:53934914-53934933 Msa0170130:CDS 60.0%
AACCTCCTGGCCTGAGAACC+CGG - chr1_4:53937238-53937257 None:intergenic 60.0%
CATAGAGGAGGGCGAGTACC+AGG - chr1_4:53937431-53937450 None:intergenic 60.0%
GCGTCAGACTGGCATAGAGG+AGG - chr1_4:53937443-53937462 None:intergenic 60.0%
GACCGCGTGCTTAGACCTAC+CGG + chr1_4:53938755-53938774 Msa0170130:CDS 60.0%
CTAGACCGGGTTCTCAGGCC+AGG + chr1_4:53937230-53937249 Msa0170130:CDS 65.0%
GACCGGGTTCTCAGGCCAGG+AGG + chr1_4:53937233-53937252 Msa0170130:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 53933134 53939393 53933134 ID=Msa0170130;Name=Msa0170130
chr1_4 mRNA 53933134 53939393 53933134 ID=Msa0170130-mRNA-1;Parent=Msa0170130;Name=Msa0170130-mRNA-1;_AED=0.06;_eAED=0.06;_QI=521|1|1|1|0.66|0.6|10|429|624
chr1_4 exon 53933134 53933167 53933134 ID=Msa0170130-mRNA-1:exon:16034;Parent=Msa0170130-mRNA-1
chr1_4 exon 53933283 53933351 53933283 ID=Msa0170130-mRNA-1:exon:16035;Parent=Msa0170130-mRNA-1
chr1_4 exon 53933431 53933670 53933431 ID=Msa0170130-mRNA-1:exon:16036;Parent=Msa0170130-mRNA-1
chr1_4 exon 53934509 53934962 53934509 ID=Msa0170130-mRNA-1:exon:16037;Parent=Msa0170130-mRNA-1
chr1_4 exon 53935391 53935555 53935391 ID=Msa0170130-mRNA-1:exon:16038;Parent=Msa0170130-mRNA-1
chr1_4 exon 53935955 53936137 53935955 ID=Msa0170130-mRNA-1:exon:16039;Parent=Msa0170130-mRNA-1
chr1_4 exon 53936927 53937521 53936927 ID=Msa0170130-mRNA-1:exon:16040;Parent=Msa0170130-mRNA-1
chr1_4 exon 53937854 53937966 53937854 ID=Msa0170130-mRNA-1:exon:16041;Parent=Msa0170130-mRNA-1
chr1_4 exon 53938104 53938324 53938104 ID=Msa0170130-mRNA-1:exon:16042;Parent=Msa0170130-mRNA-1
chr1_4 exon 53938643 53939393 53938643 ID=Msa0170130-mRNA-1:exon:16043;Parent=Msa0170130-mRNA-1
chr1_4 five_prime_UTR 53933134 53933167 53933134 ID=Msa0170130-mRNA-1:five_prime_utr;Parent=Msa0170130-mRNA-1
chr1_4 five_prime_UTR 53933283 53933351 53933283 ID=Msa0170130-mRNA-1:five_prime_utr;Parent=Msa0170130-mRNA-1
chr1_4 five_prime_UTR 53933431 53933670 53933431 ID=Msa0170130-mRNA-1:five_prime_utr;Parent=Msa0170130-mRNA-1
chr1_4 five_prime_UTR 53934509 53934686 53934509 ID=Msa0170130-mRNA-1:five_prime_utr;Parent=Msa0170130-mRNA-1
chr1_4 CDS 53934687 53934962 53934687 ID=Msa0170130-mRNA-1:cds;Parent=Msa0170130-mRNA-1
chr1_4 CDS 53935391 53935555 53935391 ID=Msa0170130-mRNA-1:cds;Parent=Msa0170130-mRNA-1
chr1_4 CDS 53935955 53936137 53935955 ID=Msa0170130-mRNA-1:cds;Parent=Msa0170130-mRNA-1
chr1_4 CDS 53936927 53937521 53936927 ID=Msa0170130-mRNA-1:cds;Parent=Msa0170130-mRNA-1
chr1_4 CDS 53937854 53937966 53937854 ID=Msa0170130-mRNA-1:cds;Parent=Msa0170130-mRNA-1
chr1_4 CDS 53938104 53938324 53938104 ID=Msa0170130-mRNA-1:cds;Parent=Msa0170130-mRNA-1
chr1_4 CDS 53938643 53938964 53938643 ID=Msa0170130-mRNA-1:cds;Parent=Msa0170130-mRNA-1
chr1_4 three_prime_UTR 53938965 53939393 53938965 ID=Msa0170130-mRNA-1:three_prime_utr;Parent=Msa0170130-mRNA-1
Gene Sequence

>Msa0170130

ATGTCGAGGGGGAGATCTGATGGGTCACAAAAGAAGCGCATAGTTGCTTCCATCTGTGTTGCGACGGTTTTTATTGGTTTATTGTATGTGTATGGTGGATCCATCTTTGGTTCTCAAAGTAGTGGTTCATCTGCTCTAGAATATGACAAATCATTAAGGAAACTCGGGTCATCATATTTGGGTGCGGATGATGACAATGATGGCAAGCAAGATGAATCTTCATCAAGTTTCGGGCAGGTTGAGGAGGAGGACAATATTGTTCCAAAGAGTTTCCCTGTTTGTGATGATCGACATTCGGAGTTGATTCCTTGCTTAGATAGACACCTTATCTATCAACTGCGGATGAAATTGGACTTGTCTGTGATGGAACACTATGAGAGACATTGTCCTCCTGCAGAAAGGCGCTACAATTGCTTGATTCCACCTCCAGCAGGATACAAGGTCCCTGTTAAGTGGCCAAAAAGCAGAGATGAGGTGTGGAAAGCAAATATCCCGCATACTCACCTTGCACATGAAAAATCTGACCAGAACTGGATGGTTGAAAAAGGTGAAAAGATAGCGTTTCCTGGAGGTGGGACTCATTTTCATTATGGAGCTGATAAGTACATTGCATCAATGGCAAATATGCTTAACTTTTCGAACAATAATCTAAACAATGAAGGAAGATTGCGGACAGTGCTTGATGTTGGCTGTGGTGTTGCAAGTTTCGGAGGGTACCTTCTTGCATCTGATATCATTACAATGTCCTTGGCACCAAATGATGTGCATCAAAATCAAATCCAATTTGCCCTCGAAAGAGGAATTCCGGCATATCTTGGTGTGTTGGGAACTAAGAGACTTCCATACCCAAGCAGATCTTTTGAACTTGCTCATTGTTCTCGTTGTCGAATTGATTGGCTTCAGAGAGATGGAATACTACTTCTTGAACTAGACCGGGTTCTCAGGCCAGGAGGTTATTTCGCATACTCGTCTCCAGAAGCATATGCTCAGGATGAAGAGAATCTAAGGATATGGAAAGAAATGAGTGATCTTGTGGGGCGTATGTGTTGGAGAATAGCTTCAAAAAAGAACCAAACTGTTATCTGGCAAAAACCTTTGACAAATGATTGCTATAAAAAAAGAGAACCTGGTACTCGCCCTCCTCTATGCCAGTCTGACGCAGATCCTGATGCAGTTTTTGGAGTAAATATGGAAGTTTGCATAACACCTTACAGTGAACATGACAACAAAGCTAAAGGTAGTGGCTTAGCTCCATGGCCTGCAAGATTGACCAGTCCTCCTCCTAGATTAGCTGATTTTGGCTATTCAAATGAAATGTTCGAAAAGGACACGGAACTATGGCGAGAGAGAGTTGATAAATACTGGAGTCTCATGAGTAAAAAAATCAAATCCGATACAATAAGGAATATTATGGATATGAAAGCTAACATGGGTTCATTTGGAGCTGCTCTTAAAGACAAGGATGTATGGGTGATGAATGTTGTACCTCAAGATGGACCAAACACACTTAAAGTTATATATGACAGAGGCCTCATAGGCGCCACTCATGACTGGTGTGAAGCATTCTCAACATACCCTCGGACTTACGACTTACTCCATGCATGGACTGTCTTGTCTGACGTAGCGAAGAAAGATTGCAGTCCAGAGGATCTATTGATTGAGATGGACCGCGTGCTTAGACCTACCGGTTTTGTAATCTTCCGTGATAAACAGCCAATGATTGATTTCGTGAAGAAGTACTTAACTGCTTTGCACTGGGAAGCAGTTGCAACCGCAGATTCGGGTTCTGACTCTGTTCAGGACAGTGATGAAGTTGTTTTTATCATACAGAAGAAATTGTGGCTAACTAGTGGAAGCTTCAGGGATACTGAATGA
Protein sequence

>Msa0170130

MSRGRSDGSQKKRIVASICVATVFIGLLYVYGGSIFGSQSSGSSALEYDKSLRKLGSSYLGADDDNDGKQDESSSSFGQVEEEDNIVPKSFPVCDDRHSELIPCLDRHLIYQLRMKLDLSVMEHYERHCPPAERRYNCLIPPPAGYKVPVKWPKSRDEVWKANIPHTHLAHEKSDQNWMVEKGEKIAFPGGGTHFHYGADKYIASMANMLNFSNNNLNNEGRLRTVLDVGCGVASFGGYLLASDIITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEENLRIWKEMSDLVGRMCWRIASKKNQTVIWQKPLTNDCYKKREPGTRPPLCQSDADPDAVFGVNMEVCITPYSEHDNKAKGSGLAPWPARLTSPPPRLADFGYSNEMFEKDTELWRERVDKYWSLMSKKIKSDTIRNIMDMKANMGSFGAALKDKDVWVMNVVPQDGPNTLKVIYDRGLIGATHDWCEAFSTYPRTYDLLHAWTVLSDVAKKDCSPEDLLIEMDRVLRPTGFVIFRDKQPMIDFVKKYLTALHWEAVATADSGSDSVQDSDEVVFIIQKKLWLTSGSFRDTE*