AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0472270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472270 MtrunA17_Chr3g0127901 93.458 321 13 3 1 321 41 353 0.0 545
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472270 AT5G24490.1 71.130 239 67 2 84 321 71 308 2.38e-120 348

Find 123 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGGTGACTTGGTCTTTA+TGG 0.117605 3_3:+74670509 None:intergenic
ACGATTGTCTCTTTCCATTT+TGG 0.132482 3_3:+74670740 None:intergenic
GATAGTAATAGCAATTTCTT+TGG 0.267107 3_3:-74668937 Msa0472270:three_prime_UTR
GCTGCTGCCGCCGCGGCGTT+TGG 0.274036 3_3:+74670413 None:intergenic
ATTGCTTCAAACACGGTTAA+AGG 0.283097 3_3:+74669325 None:intergenic
AAGAGGAGGAGGATGGAAAA+AGG 0.283986 3_3:+74670586 None:intergenic
ATCTGCTTCACCGTTTCCTT+TGG 0.285013 3_3:+74669072 None:intergenic
AAGAAAGCTGAGAAAGATTA+AGG 0.301741 3_3:-74669780 Msa0472270:CDS
CGCCGCGGCGGCAGCAGCGG+CGG 0.317244 3_3:-74670408 Msa0472270:CDS
AAACGGTGAAGCAGATAAAT+TGG 0.329912 3_3:-74669065 Msa0472270:CDS
ACTCGTGGTGGAGGAGAATT+TGG 0.356620 3_3:-74670027 Msa0472270:CDS
AAAAGAAAAGAAGGAGGTTA+TGG 0.362880 3_3:-74669106 Msa0472270:CDS
TACTGTTTAGTCTGTATATA+TGG 0.366046 3_3:+74670667 None:intergenic
ATGTTCATCGTCATCCAAAA+TGG 0.381039 3_3:-74670754 Msa0472270:five_prime_UTR
TCTGCTTCACCGTTTCCTTT+GGG 0.387106 3_3:+74669073 None:intergenic
TTAGCCGGTTCAACCACTAT+AGG 0.402037 3_3:+74669040 None:intergenic
GCATGGGGTGGTGCGGGCTG+AGG 0.403257 3_3:-74669855 Msa0472270:CDS
TACCTATGCGAGTATAGATT+TGG 0.408357 3_3:-74669819 Msa0472270:CDS
ACCTCGCATCTACGTGTTCT+AGG 0.409433 3_3:+74669997 None:intergenic
AAAGAGGCATGGGGTGGTGC+GGG 0.416801 3_3:-74669861 Msa0472270:CDS
TGAAATTCTAATGGAGACTC+TGG 0.418491 3_3:-74668898 Msa0472270:three_prime_UTR
GCCACATGAAGGGATCTAAT+AGG 0.418680 3_3:-74669736 Msa0472270:CDS
TCTCCGTTGTTTGTATGTCA+TGG 0.421393 3_3:-74670380 Msa0472270:CDS
AAACGCCGCGGCGGCAGCAG+CGG 0.425141 3_3:-74670411 Msa0472270:CDS
GAAGAAGAAGAGGAGGAGGA+TGG 0.440212 3_3:+74670579 None:intergenic
TCCTCATCCTGTGTGGGTAA+TGG 0.447494 3_3:+74669689 None:intergenic
AGTTGCATATGAAATTCTAA+TGG 0.448766 3_3:-74668907 Msa0472270:three_prime_UTR
TTCCGTCAAATTAATCATCC+AGG 0.449850 3_3:-74670343 Msa0472270:CDS
AGAGGAAGAAGAAGAGGAGG+AGG 0.461261 3_3:+74670575 None:intergenic
TGTAGAGAGGGTTCTTTAGC+CGG 0.466266 3_3:+74669025 None:intergenic
GTCTTTATGGAGGAAGGTAG+AGG 0.468202 3_3:+74670522 None:intergenic
ACCCTGGATGATTAATTTGA+CGG 0.468958 3_3:+74670341 None:intergenic
TCCTTTCATTCTTGTAGAGA+GGG 0.474483 3_3:+74669013 None:intergenic
TGGATAATCTATGAGTAGGC+TGG 0.474943 3_3:-74670812 None:intergenic
CTTTGTTTACAAAGAGGCAT+GGG 0.478410 3_3:-74669871 Msa0472270:CDS
ATTGTATACAAAAGAAAAGA+AGG 0.479149 3_3:-74669115 Msa0472270:CDS
CTCCGTTGTTTGTATGTCAT+GGG 0.482798 3_3:-74670379 Msa0472270:CDS
AAGGTTTGTGTGGAAGTTGA+AGG 0.492805 3_3:+74670605 None:intergenic
GGAGCCTATAGTGGTTGAAC+CGG 0.496037 3_3:-74669044 Msa0472270:CDS
AACTGAAATCTCCCCACAAA+AGG 0.497376 3_3:-74669660 Msa0472270:CDS
CAAAGAGGCATGGGGTGGTG+CGG 0.497915 3_3:-74669862 Msa0472270:CDS
AGCAATTGACCAGTTGGAAA+TGG 0.498256 3_3:-74669308 Msa0472270:CDS
TCTATGAGTAGGCTGGGAAA+TGG 0.499776 3_3:-74670805 Msa0472270:five_prime_UTR
CTCATTATTCCCAAAGGAAA+CGG 0.502483 3_3:-74669082 Msa0472270:CDS
CTTCATTCATAATATGTCAA+TGG 0.507528 3_3:-74670634 Msa0472270:exon
TTCTCCTGTCAAGAATGTTG+TGG 0.508305 3_3:+74670488 None:intergenic
GGAAGAAGAAGAACTTATTG+AGG 0.514048 3_3:-74669636 Msa0472270:CDS
CCCTCCACAACATTCTTGAC+AGG 0.515980 3_3:-74670492 Msa0472270:CDS
ACCCTCTCTACAAGAATGAA+AGG 0.518644 3_3:-74669014 Msa0472270:exon
CTGTATATATGGAAGAAAGA+AGG 0.520562 3_3:+74670678 None:intergenic
AGATAAATTGGAGCCTATAG+TGG 0.523119 3_3:-74669053 Msa0472270:CDS
CATGAGCAACCATTTCCAAC+TGG 0.524804 3_3:+74669299 None:intergenic
TCCTGTCAAGAATGTTGTGG+AGG 0.525749 3_3:+74670491 None:intergenic
ACTTTGTTTACAAAGAGGCA+TGG 0.529041 3_3:-74669872 Msa0472270:CDS
GAAATTCTAATGGAGACTCT+GGG 0.530283 3_3:-74668897 Msa0472270:three_prime_UTR
AGAAGAAGAACTTATTGAGG+AGG 0.531385 3_3:-74669633 Msa0472270:intron
GTTTGAAGCAATTGACCAGT+TGG 0.532744 3_3:-74669314 Msa0472270:CDS
GGATAATCTATGAGTAGGCT+GGG 0.534094 3_3:-74670811 None:intergenic
AGGTTTGTGTGGAAGTTGAA+GGG 0.535418 3_3:+74670606 None:intergenic
TTCCTTTCATTCTTGTAGAG+AGG 0.539789 3_3:+74669012 None:intergenic
GCCATTACCCACACAGGATG+AGG 0.542075 3_3:-74669690 Msa0472270:CDS
GAATGTTGTGGAGGGTGACT+TGG 0.542454 3_3:+74670500 None:intergenic
CCGCGTAGAGGAAGAAGAAG+AGG 0.546986 3_3:+74670569 None:intergenic
TTCATCCTCCTCATCCTGTG+TGG 0.547833 3_3:+74669682 None:intergenic
TGATCATGGTCGCCACATGA+AGG 0.549029 3_3:-74669747 Msa0472270:CDS
ATATGGAAGAAAGAAGGAAG+AGG 0.551920 3_3:+74670684 None:intergenic
GTTGTTTGTATGTCATGGGA+CGG 0.558277 3_3:-74670375 Msa0472270:CDS
GTTATGTGCAGCACACTCAA+TGG 0.559392 3_3:+74668787 None:intergenic
AACCGCCGCTGCTGCCGCCG+CGG 0.559838 3_3:+74670406 None:intergenic
ACAACATTCTTGACAGGAGA+AGG 0.561368 3_3:-74670486 Msa0472270:CDS
GCGTTTGGTTGTTGTTGTTG+TGG 0.561693 3_3:+74670428 None:intergenic
TCATCCTCCTCATCCTGTGT+GGG 0.562138 3_3:+74669683 None:intergenic
AAGAGATTGTACATGATTAG+CGG 0.565384 3_3:-74668959 Msa0472270:three_prime_UTR
GACTTGGTCTTTATGGAGGA+AGG 0.566043 3_3:+74670516 None:intergenic
GATCATGGTCGCCACATGAA+GGG 0.566295 3_3:-74669746 Msa0472270:CDS
CGTAGAGGAAGAAGAAGAGG+AGG 0.569409 3_3:+74670572 None:intergenic
ATTAATTTGACGGAAGAGAG+TGG 0.569781 3_3:+74670351 None:intergenic
CAGCTTTCTTTGAATGACCG+AGG 0.571209 3_3:+74669793 None:intergenic
ACAGCACGTAGAGGAGAAAG+TGG 0.574125 3_3:-74670106 Msa0472270:CDS
AGACTATCTACTCGTGGTGG+AGG 0.576666 3_3:-74670036 Msa0472270:CDS
AGGTTACTTTGTTTACAAAG+AGG 0.577297 3_3:-74669877 Msa0472270:CDS
TTTATGGAGGAAGGTAGAGG+AGG 0.579108 3_3:+74670525 None:intergenic
GTTATGGATAATCTATGAGT+AGG 0.580925 3_3:-74670816 None:intergenic
TCCGTCAAATTAATCATCCA+GGG 0.585766 3_3:-74670342 Msa0472270:CDS
AGAGGAAATAATGATGATGA+TGG 0.585904 3_3:+74670702 None:intergenic
CTGGTCAATTGCTTCAAACA+CGG 0.587799 3_3:+74669318 None:intergenic
GGTGCGGGCTGAGGAACATG+CGG 0.592841 3_3:-74669846 Msa0472270:CDS
CAGCACGTAGAGGAGAAAGT+GGG 0.593436 3_3:-74670105 Msa0472270:CDS
TACAGAAAGGCACCGCGTAG+AGG 0.594586 3_3:+74670557 None:intergenic
TGAAATCTCCCCACAAAAGG+AGG 0.599934 3_3:-74669657 Msa0472270:CDS
GAGTATAGATTTGGTGTCCT+CGG 0.603285 3_3:-74669810 Msa0472270:CDS
TATGGACTCATTATTCCCAA+AGG 0.604836 3_3:-74669088 Msa0472270:CDS
GAGGAAGAGAGAGTACAGAA+AGG 0.608429 3_3:+74670544 None:intergenic
GGGTGACTTGGTCTTTATGG+AGG 0.609776 3_3:+74670512 None:intergenic
GGTGGAGGAGAATTTGGTCG+AGG 0.611696 3_3:-74670021 Msa0472270:CDS
TAGGTTGAAATTTAGAGAGG+CGG 0.613252 3_3:-74669717 Msa0472270:CDS
GCTTCAAACACGGTTAAAGG+AGG 0.615142 3_3:+74669328 None:intergenic
CACCAAATCTATACTCGCAT+AGG 0.617087 3_3:+74669817 None:intergenic
GTTTACAAAGAGGCATGGGG+TGG 0.620636 3_3:-74669867 Msa0472270:CDS
TAATCATGTACAATCTCTTG+TGG 0.626430 3_3:+74668963 None:intergenic
TTTGGTTGTTGTTGTTGTGG+CGG 0.626673 3_3:+74670431 None:intergenic
ATTCAACTGTGTCTCACACG+CGG 0.627223 3_3:+74670781 None:intergenic
ACCTATTAGATCCCTTCATG+TGG 0.628686 3_3:+74669735 None:intergenic
TAATAGGTTGAAATTTAGAG+AGG 0.630490 3_3:-74669720 Msa0472270:CDS
AAAGCAGACAACATTGTCAG+AGG 0.631060 3_3:+74668746 None:intergenic
TTCAACTGTGTCTCACACGC+GGG 0.640451 3_3:+74670782 None:intergenic
ACATTCTTGACAGGAGAAGG+AGG 0.645382 3_3:-74670483 Msa0472270:CDS
ACCTAGAACACGTAGATGCG+AGG 0.650273 3_3:-74669998 Msa0472270:intron
AGCACGTAGAGGAGAAAGTG+GGG 0.652859 3_3:-74670104 Msa0472270:CDS
TTTGTTTACAAAGAGGCATG+GGG 0.659293 3_3:-74669870 Msa0472270:CDS
CCTGTCAAGAATGTTGTGGA+GGG 0.660271 3_3:+74670492 None:intergenic
ACAACAACCAAACGCCGCGG+CGG 0.660743 3_3:-74670420 Msa0472270:CDS
TGCGGTGAAACAGCACGTAG+AGG 0.663832 3_3:-74670115 Msa0472270:CDS
GTATACAAAAGAAAAGAAGG+AGG 0.667757 3_3:-74669112 Msa0472270:CDS
CCTCTTCTTCTTCCTCTACG+CGG 0.668606 3_3:-74670569 Msa0472270:CDS
ATTACCCACACAGGATGAGG+AGG 0.669047 3_3:-74669687 Msa0472270:CDS
ACAACAACAACCAAACGCCG+CGG 0.673009 3_3:-74670423 Msa0472270:CDS
AAATTCTAATGGAGACTCTG+GGG 0.673319 3_3:-74668896 Msa0472270:three_prime_UTR
GGTATTGCCATTACCCACAC+AGG 0.681515 3_3:-74669696 Msa0472270:CDS
GTCCCATGACATACAAACAA+CGG 0.689809 3_3:+74670377 None:intergenic
GATGTGAGACTATCTACTCG+TGG 0.713178 3_3:-74670042 Msa0472270:CDS
TTGAGTTCAGCTGAATGATG+CGG 0.727884 3_3:-74670133 Msa0472270:intron
GTGAGACTATCTACTCGTGG+TGG 0.731336 3_3:-74670039 Msa0472270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTAAAAACTTTAAAACT+TGG + chr3_3:74670619-74670638 None:intergenic 10.0%
!!! TTATTAAAAACTTTAAAACT+TGG + chr3_3:74670619-74670638 None:intergenic 10.0%
!! TAGTAATGATGATAATAAAA+TGG + chr3_3:74669185-74669204 None:intergenic 15.0%
!!! TTTAAAATTTTGAGTAATCT+GGG + chr3_3:74670789-74670808 None:intergenic 15.0%
!!! ATTTAAAATTTTGAGTAATC+TGG + chr3_3:74670790-74670809 None:intergenic 15.0%
!! TAGTAATGATGATAATAAAA+TGG + chr3_3:74669185-74669204 None:intergenic 15.0%
!!! TTTAAAATTTTGAGTAATCT+GGG + chr3_3:74670789-74670808 None:intergenic 15.0%
!!! ATTTAAAATTTTGAGTAATC+TGG + chr3_3:74670790-74670809 None:intergenic 15.0%
!! GATGATAATAAAATGGAAAT+GGG + chr3_3:74669178-74669197 None:intergenic 20.0%
!! TGATGATAATAAAATGGAAA+TGG + chr3_3:74669179-74669198 None:intergenic 20.0%
!! ATTAGAAAAACTTCAATTTC+TGG - chr3_3:74669957-74669976 Msa0472270:intron 20.0%
!! ATTGTATACAAAAGAAAAGA+AGG - chr3_3:74670354-74670373 Msa0472270:CDS 20.0%
!!! AGTTTTTAATAATGTACACT+TGG - chr3_3:74670627-74670646 Msa0472270:exon 20.0%
!! GATGATAATAAAATGGAAAT+GGG + chr3_3:74669178-74669197 None:intergenic 20.0%
!! TGATGATAATAAAATGGAAA+TGG + chr3_3:74669179-74669198 None:intergenic 20.0%
!! ATTAGAAAAACTTCAATTTC+TGG - chr3_3:74669957-74669976 Msa0472270:intron 20.0%
!! ATTGTATACAAAAGAAAAGA+AGG - chr3_3:74670354-74670373 Msa0472270:CDS 20.0%
!!! AGTTTTTAATAATGTACACT+TGG - chr3_3:74670627-74670646 Msa0472270:exon 20.0%
! TACTGTTTAGTCTGTATATA+TGG + chr3_3:74668805-74668824 None:intergenic 25.0%
! CTTCATTCATAATATGTCAA+TGG - chr3_3:74668835-74668854 Msa0472270:three_prime_UTR 25.0%
!! TGATTTCTATGATTTGCATT+AGG - chr3_3:74669572-74669591 Msa0472270:intron 25.0%
!! TAATAGGTTGAAATTTAGAG+AGG - chr3_3:74669749-74669768 Msa0472270:CDS 25.0%
! ATGATTAATATCAACAACGA+AGG + chr3_3:74669868-74669887 None:intergenic 25.0%
!!! AAAAACTTCAATTTCTGGTT+TGG - chr3_3:74669962-74669981 Msa0472270:intron 25.0%
! ATAAAATGTAGTGAGAAACA+TGG + chr3_3:74670264-74670283 None:intergenic 25.0%
!! CTCAATTTTATGCTATCTTA+GGG - chr3_3:74670292-74670311 Msa0472270:intron 25.0%
!! TCAATTTTATGCTATCTTAG+GGG - chr3_3:74670293-74670312 Msa0472270:intron 25.0%
! GATAGTAATAGCAATTTCTT+TGG - chr3_3:74670532-74670551 Msa0472270:CDS 25.0%
! AGTTGCATATGAAATTCTAA+TGG - chr3_3:74670562-74670581 Msa0472270:CDS 25.0%
! TACTGTTTAGTCTGTATATA+TGG + chr3_3:74668805-74668824 None:intergenic 25.0%
! CTTCATTCATAATATGTCAA+TGG - chr3_3:74668835-74668854 Msa0472270:three_prime_UTR 25.0%
!! TGATTTCTATGATTTGCATT+AGG - chr3_3:74669572-74669591 Msa0472270:intron 25.0%
!! TAATAGGTTGAAATTTAGAG+AGG - chr3_3:74669749-74669768 Msa0472270:CDS 25.0%
! ATGATTAATATCAACAACGA+AGG + chr3_3:74669868-74669887 None:intergenic 25.0%
!!! AAAAACTTCAATTTCTGGTT+TGG - chr3_3:74669962-74669981 Msa0472270:intron 25.0%
! ATAAAATGTAGTGAGAAACA+TGG + chr3_3:74670264-74670283 None:intergenic 25.0%
!! CTCAATTTTATGCTATCTTA+GGG - chr3_3:74670292-74670311 Msa0472270:intron 25.0%
!! TCAATTTTATGCTATCTTAG+GGG - chr3_3:74670293-74670312 Msa0472270:intron 25.0%
! GATAGTAATAGCAATTTCTT+TGG - chr3_3:74670532-74670551 Msa0472270:CDS 25.0%
! AGTTGCATATGAAATTCTAA+TGG - chr3_3:74670562-74670581 Msa0472270:CDS 25.0%
! AGAGGAAATAATGATGATGA+TGG + chr3_3:74668770-74668789 None:intergenic 30.0%
CTGTATATATGGAAGAAAGA+AGG + chr3_3:74668794-74668813 None:intergenic 30.0%
AGAACAAGTGTAATTAGCAA+CGG - chr3_3:74669278-74669297 Msa0472270:CDS 30.0%
TATAACTAATCTACTAGCTG+TGG - chr3_3:74669313-74669332 Msa0472270:CDS 30.0%
!! TTTGCTTTTGTTGTAAACCT+AGG - chr3_3:74669521-74669540 Msa0472270:intron 30.0%
! AGGTTACTTTGTTTACAAAG+AGG - chr3_3:74669592-74669611 Msa0472270:intron 30.0%
AAGAAAGCTGAGAAAGATTA+AGG - chr3_3:74669689-74669708 Msa0472270:CDS 30.0%
AAGGAAAAAGAAACTGATCA+TGG - chr3_3:74669708-74669727 Msa0472270:CDS 30.0%
GTAGCTAGAAATATCATATC+AGG - chr3_3:74669891-74669910 Msa0472270:intron 30.0%
!!! ACTACTGTTTTAGCTATCTT+TGG - chr3_3:74670233-74670252 Msa0472270:intron 30.0%
! GCTCAATTTTATGCTATCTT+AGG - chr3_3:74670291-74670310 Msa0472270:intron 30.0%
GTATACAAAAGAAAAGAAGG+AGG - chr3_3:74670357-74670376 Msa0472270:CDS 30.0%
AAAAGAAAAGAAGGAGGTTA+TGG - chr3_3:74670363-74670382 Msa0472270:CDS 30.0%
TAATCATGTACAATCTCTTG+TGG + chr3_3:74670509-74670528 None:intergenic 30.0%
AAGAGATTGTACATGATTAG+CGG - chr3_3:74670510-74670529 Msa0472270:CDS 30.0%
! CTCTTTCATTTTACAATCAC+TGG + chr3_3:74670657-74670676 None:intergenic 30.0%
! AGAGGAAATAATGATGATGA+TGG + chr3_3:74668770-74668789 None:intergenic 30.0%
CTGTATATATGGAAGAAAGA+AGG + chr3_3:74668794-74668813 None:intergenic 30.0%
AGAACAAGTGTAATTAGCAA+CGG - chr3_3:74669278-74669297 Msa0472270:CDS 30.0%
TATAACTAATCTACTAGCTG+TGG - chr3_3:74669313-74669332 Msa0472270:CDS 30.0%
!! TTTGCTTTTGTTGTAAACCT+AGG - chr3_3:74669521-74669540 Msa0472270:intron 30.0%
! AGGTTACTTTGTTTACAAAG+AGG - chr3_3:74669592-74669611 Msa0472270:intron 30.0%
AAGAAAGCTGAGAAAGATTA+AGG - chr3_3:74669689-74669708 Msa0472270:CDS 30.0%
AAGGAAAAAGAAACTGATCA+TGG - chr3_3:74669708-74669727 Msa0472270:CDS 30.0%
GTAGCTAGAAATATCATATC+AGG - chr3_3:74669891-74669910 Msa0472270:intron 30.0%
!!! ACTACTGTTTTAGCTATCTT+TGG - chr3_3:74670233-74670252 Msa0472270:intron 30.0%
! GCTCAATTTTATGCTATCTT+AGG - chr3_3:74670291-74670310 Msa0472270:intron 30.0%
GTATACAAAAGAAAAGAAGG+AGG - chr3_3:74670357-74670376 Msa0472270:CDS 30.0%
AAAAGAAAAGAAGGAGGTTA+TGG - chr3_3:74670363-74670382 Msa0472270:CDS 30.0%
TAATCATGTACAATCTCTTG+TGG + chr3_3:74670509-74670528 None:intergenic 30.0%
AAGAGATTGTACATGATTAG+CGG - chr3_3:74670510-74670529 Msa0472270:CDS 30.0%
! CTCTTTCATTTTACAATCAC+TGG + chr3_3:74670657-74670676 None:intergenic 30.0%
ATGTTCATCGTCATCCAAAA+TGG - chr3_3:74668715-74668734 Msa0472270:three_prime_UTR 35.0%
! ACGATTGTCTCTTTCCATTT+TGG + chr3_3:74668732-74668751 None:intergenic 35.0%
ATATGGAAGAAAGAAGGAAG+AGG + chr3_3:74668788-74668807 None:intergenic 35.0%
! ATTAATTTGACGGAAGAGAG+TGG + chr3_3:74669121-74669140 None:intergenic 35.0%
TTCCGTCAAATTAATCATCC+AGG - chr3_3:74669126-74669145 Msa0472270:CDS 35.0%
TCCGTCAAATTAATCATCCA+GGG - chr3_3:74669127-74669146 Msa0472270:CDS 35.0%
! ACCCTGGATGATTAATTTGA+CGG + chr3_3:74669131-74669150 None:intergenic 35.0%
!! ATACCTGCATATTTTTACCC+TGG + chr3_3:74669147-74669166 None:intergenic 35.0%
!! CTTTTGTTGTAAACCTAGGA+TGG - chr3_3:74669525-74669544 Msa0472270:intron 35.0%
! ACTTTGTTTACAAAGAGGCA+TGG - chr3_3:74669597-74669616 Msa0472270:intron 35.0%
! CTTTGTTTACAAAGAGGCAT+GGG - chr3_3:74669598-74669617 Msa0472270:intron 35.0%
! TTTGTTTACAAAGAGGCATG+GGG - chr3_3:74669599-74669618 Msa0472270:intron 35.0%
TACCTATGCGAGTATAGATT+TGG - chr3_3:74669650-74669669 Msa0472270:CDS 35.0%
! TAGGTTGAAATTTAGAGAGG+CGG - chr3_3:74669752-74669771 Msa0472270:CDS 35.0%
GGAAGAAGAAGAACTTATTG+AGG - chr3_3:74669833-74669852 Msa0472270:CDS 35.0%
AGAAGAAGAACTTATTGAGG+AGG - chr3_3:74669836-74669855 Msa0472270:CDS 35.0%
ATTGCTTCAAACACGGTTAA+AGG + chr3_3:74670147-74670166 None:intergenic 35.0%
! GCTTTTCGAAATGAAGAATC+TGG - chr3_3:74670201-74670220 Msa0472270:intron 35.0%
! AAGTGTACTTCCTTTGTTTC+AGG - chr3_3:74670321-74670340 Msa0472270:intron 35.0%
! AGTGTACTTCCTTTGTTTCA+GGG - chr3_3:74670322-74670341 Msa0472270:intron 35.0%
TATGGACTCATTATTCCCAA+AGG - chr3_3:74670381-74670400 Msa0472270:CDS 35.0%
CTCATTATTCCCAAAGGAAA+CGG - chr3_3:74670387-74670406 Msa0472270:CDS 35.0%
AAACGGTGAAGCAGATAAAT+TGG - chr3_3:74670404-74670423 Msa0472270:CDS 35.0%
AGATAAATTGGAGCCTATAG+TGG - chr3_3:74670416-74670435 Msa0472270:CDS 35.0%
TCCTTTCATTCTTGTAGAGA+GGG + chr3_3:74670459-74670478 None:intergenic 35.0%
TTCCTTTCATTCTTGTAGAG+AGG + chr3_3:74670460-74670479 None:intergenic 35.0%
TGAAATTCTAATGGAGACTC+TGG - chr3_3:74670571-74670590 Msa0472270:CDS 35.0%
GAAATTCTAATGGAGACTCT+GGG - chr3_3:74670572-74670591 Msa0472270:CDS 35.0%
AAATTCTAATGGAGACTCTG+GGG - chr3_3:74670573-74670592 Msa0472270:CDS 35.0%
ATGTTCATCGTCATCCAAAA+TGG - chr3_3:74668715-74668734 Msa0472270:three_prime_UTR 35.0%
! ACGATTGTCTCTTTCCATTT+TGG + chr3_3:74668732-74668751 None:intergenic 35.0%
ATATGGAAGAAAGAAGGAAG+AGG + chr3_3:74668788-74668807 None:intergenic 35.0%
! ATTAATTTGACGGAAGAGAG+TGG + chr3_3:74669121-74669140 None:intergenic 35.0%
TTCCGTCAAATTAATCATCC+AGG - chr3_3:74669126-74669145 Msa0472270:CDS 35.0%
TCCGTCAAATTAATCATCCA+GGG - chr3_3:74669127-74669146 Msa0472270:CDS 35.0%
! ACCCTGGATGATTAATTTGA+CGG + chr3_3:74669131-74669150 None:intergenic 35.0%
!! ATACCTGCATATTTTTACCC+TGG + chr3_3:74669147-74669166 None:intergenic 35.0%
!! CTTTTGTTGTAAACCTAGGA+TGG - chr3_3:74669525-74669544 Msa0472270:intron 35.0%
! ACTTTGTTTACAAAGAGGCA+TGG - chr3_3:74669597-74669616 Msa0472270:intron 35.0%
! CTTTGTTTACAAAGAGGCAT+GGG - chr3_3:74669598-74669617 Msa0472270:intron 35.0%
! TTTGTTTACAAAGAGGCATG+GGG - chr3_3:74669599-74669618 Msa0472270:intron 35.0%
TACCTATGCGAGTATAGATT+TGG - chr3_3:74669650-74669669 Msa0472270:CDS 35.0%
! TAGGTTGAAATTTAGAGAGG+CGG - chr3_3:74669752-74669771 Msa0472270:CDS 35.0%
GGAAGAAGAAGAACTTATTG+AGG - chr3_3:74669833-74669852 Msa0472270:CDS 35.0%
AGAAGAAGAACTTATTGAGG+AGG - chr3_3:74669836-74669855 Msa0472270:CDS 35.0%
ATTGCTTCAAACACGGTTAA+AGG + chr3_3:74670147-74670166 None:intergenic 35.0%
! GCTTTTCGAAATGAAGAATC+TGG - chr3_3:74670201-74670220 Msa0472270:intron 35.0%
! AAGTGTACTTCCTTTGTTTC+AGG - chr3_3:74670321-74670340 Msa0472270:intron 35.0%
! AGTGTACTTCCTTTGTTTCA+GGG - chr3_3:74670322-74670341 Msa0472270:intron 35.0%
TATGGACTCATTATTCCCAA+AGG - chr3_3:74670381-74670400 Msa0472270:CDS 35.0%
CTCATTATTCCCAAAGGAAA+CGG - chr3_3:74670387-74670406 Msa0472270:CDS 35.0%
AAACGGTGAAGCAGATAAAT+TGG - chr3_3:74670404-74670423 Msa0472270:CDS 35.0%
AGATAAATTGGAGCCTATAG+TGG - chr3_3:74670416-74670435 Msa0472270:CDS 35.0%
TCCTTTCATTCTTGTAGAGA+GGG + chr3_3:74670459-74670478 None:intergenic 35.0%
TTCCTTTCATTCTTGTAGAG+AGG + chr3_3:74670460-74670479 None:intergenic 35.0%
TGAAATTCTAATGGAGACTC+TGG - chr3_3:74670571-74670590 Msa0472270:CDS 35.0%
GAAATTCTAATGGAGACTCT+GGG - chr3_3:74670572-74670591 Msa0472270:CDS 35.0%
AAATTCTAATGGAGACTCTG+GGG - chr3_3:74670573-74670592 Msa0472270:CDS 35.0%
AGGTTTGTGTGGAAGTTGAA+GGG + chr3_3:74668866-74668885 None:intergenic 40.0%
AAGGTTTGTGTGGAAGTTGA+AGG + chr3_3:74668867-74668886 None:intergenic 40.0%
AGGATGGAAAAAGGTTTGTG+TGG + chr3_3:74668877-74668896 None:intergenic 40.0%
TTCTCCTGTCAAGAATGTTG+TGG + chr3_3:74668984-74669003 None:intergenic 40.0%
ACAACATTCTTGACAGGAGA+AGG - chr3_3:74668983-74669002 Msa0472270:three_prime_UTR 40.0%
! TTTGGTTGTTGTTGTTGTGG+CGG + chr3_3:74669041-74669060 None:intergenic 40.0%
TCTCCGTTGTTTGTATGTCA+TGG - chr3_3:74669089-74669108 Msa0472270:CDS 40.0%
CTCCGTTGTTTGTATGTCAT+GGG - chr3_3:74669090-74669109 Msa0472270:CDS 40.0%
GTCCCATGACATACAAACAA+CGG + chr3_3:74669095-74669114 None:intergenic 40.0%
GTTGTTTGTATGTCATGGGA+CGG - chr3_3:74669094-74669113 Msa0472270:CDS 40.0%
CATCCAGGGTAAAAATATGC+AGG - chr3_3:74669141-74669160 Msa0472270:intron 40.0%
TTGAGTTCAGCTGAATGATG+CGG - chr3_3:74669336-74669355 Msa0472270:CDS 40.0%
! TGTAAACCTAGGATGGATTC+AGG - chr3_3:74669532-74669551 Msa0472270:intron 40.0%
! GTAAACCTAGGATGGATTCA+GGG - chr3_3:74669533-74669552 Msa0472270:intron 40.0%
CACCAAATCTATACTCGCAT+AGG + chr3_3:74669655-74669674 None:intergenic 40.0%
!! GAGTATAGATTTGGTGTCCT+CGG - chr3_3:74669659-74669678 Msa0472270:CDS 40.0%
ACCTATTAGATCCCTTCATG+TGG + chr3_3:74669737-74669756 None:intergenic 40.0%
AACTGAAATCTCCCCACAAA+AGG - chr3_3:74669809-74669828 Msa0472270:CDS 40.0%
! TTCTTCTTCCTCCTTTTGTG+GGG + chr3_3:74669823-74669842 None:intergenic 40.0%
! CTTCTTCTTCCTCCTTTTGT+GGG + chr3_3:74669824-74669843 None:intergenic 40.0%
! TCTTCTTCTTCCTCCTTTTG+TGG + chr3_3:74669825-74669844 None:intergenic 40.0%
GAAGAACTTATTGAGGAGGT+TGG - chr3_3:74669840-74669859 Msa0472270:CDS 40.0%
ACTGGAGTTAGTGCAATGTA+AGG + chr3_3:74670076-74670095 None:intergenic 40.0%
!! AGGCTGTTTTACAGGTTGTT+CGG - chr3_3:74670100-74670119 Msa0472270:CDS 40.0%
CTGGTCAATTGCTTCAAACA+CGG + chr3_3:74670154-74670173 None:intergenic 40.0%
! GTTTGAAGCAATTGACCAGT+TGG - chr3_3:74670155-74670174 Msa0472270:intron 40.0%
AGCAATTGACCAGTTGGAAA+TGG - chr3_3:74670161-74670180 Msa0472270:intron 40.0%
! GTGTACTTCCTTTGTTTCAG+GGG - chr3_3:74670323-74670342 Msa0472270:intron 40.0%
ATTAACCTCCCCTGAAACAA+AGG + chr3_3:74670334-74670353 None:intergenic 40.0%
ACCCTCTCTACAAGAATGAA+AGG - chr3_3:74670455-74670474 Msa0472270:CDS 40.0%
AAAGCAGACAACATTGTCAG+AGG + chr3_3:74670726-74670745 None:intergenic 40.0%
AGGTTTGTGTGGAAGTTGAA+GGG + chr3_3:74668866-74668885 None:intergenic 40.0%
AAGGTTTGTGTGGAAGTTGA+AGG + chr3_3:74668867-74668886 None:intergenic 40.0%
AGGATGGAAAAAGGTTTGTG+TGG + chr3_3:74668877-74668896 None:intergenic 40.0%
TTCTCCTGTCAAGAATGTTG+TGG + chr3_3:74668984-74669003 None:intergenic 40.0%
ACAACATTCTTGACAGGAGA+AGG - chr3_3:74668983-74669002 Msa0472270:three_prime_UTR 40.0%
! TTTGGTTGTTGTTGTTGTGG+CGG + chr3_3:74669041-74669060 None:intergenic 40.0%
TCTCCGTTGTTTGTATGTCA+TGG - chr3_3:74669089-74669108 Msa0472270:CDS 40.0%
CTCCGTTGTTTGTATGTCAT+GGG - chr3_3:74669090-74669109 Msa0472270:CDS 40.0%
GTCCCATGACATACAAACAA+CGG + chr3_3:74669095-74669114 None:intergenic 40.0%
GTTGTTTGTATGTCATGGGA+CGG - chr3_3:74669094-74669113 Msa0472270:CDS 40.0%
CATCCAGGGTAAAAATATGC+AGG - chr3_3:74669141-74669160 Msa0472270:intron 40.0%
TTGAGTTCAGCTGAATGATG+CGG - chr3_3:74669336-74669355 Msa0472270:CDS 40.0%
! TGTAAACCTAGGATGGATTC+AGG - chr3_3:74669532-74669551 Msa0472270:intron 40.0%
! GTAAACCTAGGATGGATTCA+GGG - chr3_3:74669533-74669552 Msa0472270:intron 40.0%
CACCAAATCTATACTCGCAT+AGG + chr3_3:74669655-74669674 None:intergenic 40.0%
!! GAGTATAGATTTGGTGTCCT+CGG - chr3_3:74669659-74669678 Msa0472270:CDS 40.0%
ACCTATTAGATCCCTTCATG+TGG + chr3_3:74669737-74669756 None:intergenic 40.0%
AACTGAAATCTCCCCACAAA+AGG - chr3_3:74669809-74669828 Msa0472270:CDS 40.0%
! TTCTTCTTCCTCCTTTTGTG+GGG + chr3_3:74669823-74669842 None:intergenic 40.0%
! CTTCTTCTTCCTCCTTTTGT+GGG + chr3_3:74669824-74669843 None:intergenic 40.0%
! TCTTCTTCTTCCTCCTTTTG+TGG + chr3_3:74669825-74669844 None:intergenic 40.0%
GAAGAACTTATTGAGGAGGT+TGG - chr3_3:74669840-74669859 Msa0472270:CDS 40.0%
ACTGGAGTTAGTGCAATGTA+AGG + chr3_3:74670076-74670095 None:intergenic 40.0%
!! AGGCTGTTTTACAGGTTGTT+CGG - chr3_3:74670100-74670119 Msa0472270:CDS 40.0%
CTGGTCAATTGCTTCAAACA+CGG + chr3_3:74670154-74670173 None:intergenic 40.0%
! GTTTGAAGCAATTGACCAGT+TGG - chr3_3:74670155-74670174 Msa0472270:intron 40.0%
AGCAATTGACCAGTTGGAAA+TGG - chr3_3:74670161-74670180 Msa0472270:intron 40.0%
! GTGTACTTCCTTTGTTTCAG+GGG - chr3_3:74670323-74670342 Msa0472270:intron 40.0%
ATTAACCTCCCCTGAAACAA+AGG + chr3_3:74670334-74670353 None:intergenic 40.0%
ACCCTCTCTACAAGAATGAA+AGG - chr3_3:74670455-74670474 Msa0472270:CDS 40.0%
AAAGCAGACAACATTGTCAG+AGG + chr3_3:74670726-74670745 None:intergenic 40.0%
ATTCAACTGTGTCTCACACG+CGG + chr3_3:74668691-74668710 None:intergenic 45.0%
AAGAGGAGGAGGATGGAAAA+AGG + chr3_3:74668886-74668905 None:intergenic 45.0%
! GAGGAAGAGAGAGTACAGAA+AGG + chr3_3:74668928-74668947 None:intergenic 45.0%
TTTATGGAGGAAGGTAGAGG+AGG + chr3_3:74668947-74668966 None:intergenic 45.0%
GTCTTTATGGAGGAAGGTAG+AGG + chr3_3:74668950-74668969 None:intergenic 45.0%
! GACTTGGTCTTTATGGAGGA+AGG + chr3_3:74668956-74668975 None:intergenic 45.0%
CCTGTCAAGAATGTTGTGGA+GGG + chr3_3:74668980-74668999 None:intergenic 45.0%
TCCTGTCAAGAATGTTGTGG+AGG + chr3_3:74668981-74669000 None:intergenic 45.0%
ACATTCTTGACAGGAGAAGG+AGG - chr3_3:74668986-74669005 Msa0472270:three_prime_UTR 45.0%
! GCGTTTGGTTGTTGTTGTTG+TGG + chr3_3:74669044-74669063 None:intergenic 45.0%
GATGTGAGACTATCTACTCG+TGG - chr3_3:74669427-74669446 Msa0472270:intron 45.0%
CAGCTTTCTTTGAATGACCG+AGG + chr3_3:74669679-74669698 None:intergenic 45.0%
GCCACATGAAGGGATCTAAT+AGG - chr3_3:74669733-74669752 Msa0472270:CDS 45.0%
TGAAATCTCCCCACAAAAGG+AGG - chr3_3:74669812-74669831 Msa0472270:CDS 45.0%
GCTTCAAACACGGTTAAAGG+AGG + chr3_3:74670144-74670163 None:intergenic 45.0%
CATGAGCAACCATTTCCAAC+TGG + chr3_3:74670173-74670192 None:intergenic 45.0%
! TACTTCCTTTGTTTCAGGGG+AGG - chr3_3:74670326-74670345 Msa0472270:intron 45.0%
TCTGCTTCACCGTTTCCTTT+GGG + chr3_3:74670399-74670418 None:intergenic 45.0%
ATCTGCTTCACCGTTTCCTT+TGG + chr3_3:74670400-74670419 None:intergenic 45.0%
! TTAGCCGGTTCAACCACTAT+AGG + chr3_3:74670432-74670451 None:intergenic 45.0%
TGTAGAGAGGGTTCTTTAGC+CGG + chr3_3:74670447-74670466 None:intergenic 45.0%
GTTATGTGCAGCACACTCAA+TGG + chr3_3:74670685-74670704 None:intergenic 45.0%
ATTCAACTGTGTCTCACACG+CGG + chr3_3:74668691-74668710 None:intergenic 45.0%
AAGAGGAGGAGGATGGAAAA+AGG + chr3_3:74668886-74668905 None:intergenic 45.0%
! GAGGAAGAGAGAGTACAGAA+AGG + chr3_3:74668928-74668947 None:intergenic 45.0%
TTTATGGAGGAAGGTAGAGG+AGG + chr3_3:74668947-74668966 None:intergenic 45.0%
GTCTTTATGGAGGAAGGTAG+AGG + chr3_3:74668950-74668969 None:intergenic 45.0%
! GACTTGGTCTTTATGGAGGA+AGG + chr3_3:74668956-74668975 None:intergenic 45.0%
CCTGTCAAGAATGTTGTGGA+GGG + chr3_3:74668980-74668999 None:intergenic 45.0%
TCCTGTCAAGAATGTTGTGG+AGG + chr3_3:74668981-74669000 None:intergenic 45.0%
ACATTCTTGACAGGAGAAGG+AGG - chr3_3:74668986-74669005 Msa0472270:three_prime_UTR 45.0%
! GCGTTTGGTTGTTGTTGTTG+TGG + chr3_3:74669044-74669063 None:intergenic 45.0%
GATGTGAGACTATCTACTCG+TGG - chr3_3:74669427-74669446 Msa0472270:intron 45.0%
CAGCTTTCTTTGAATGACCG+AGG + chr3_3:74669679-74669698 None:intergenic 45.0%
GCCACATGAAGGGATCTAAT+AGG - chr3_3:74669733-74669752 Msa0472270:CDS 45.0%
TGAAATCTCCCCACAAAAGG+AGG - chr3_3:74669812-74669831 Msa0472270:CDS 45.0%
GCTTCAAACACGGTTAAAGG+AGG + chr3_3:74670144-74670163 None:intergenic 45.0%
CATGAGCAACCATTTCCAAC+TGG + chr3_3:74670173-74670192 None:intergenic 45.0%
! TACTTCCTTTGTTTCAGGGG+AGG - chr3_3:74670326-74670345 Msa0472270:intron 45.0%
TCTGCTTCACCGTTTCCTTT+GGG + chr3_3:74670399-74670418 None:intergenic 45.0%
ATCTGCTTCACCGTTTCCTT+TGG + chr3_3:74670400-74670419 None:intergenic 45.0%
! TTAGCCGGTTCAACCACTAT+AGG + chr3_3:74670432-74670451 None:intergenic 45.0%
TGTAGAGAGGGTTCTTTAGC+CGG + chr3_3:74670447-74670466 None:intergenic 45.0%
GTTATGTGCAGCACACTCAA+TGG + chr3_3:74670685-74670704 None:intergenic 45.0%
TTCAACTGTGTCTCACACGC+GGG + chr3_3:74668690-74668709 None:intergenic 50.0%
GAAGAAGAAGAGGAGGAGGA+TGG + chr3_3:74668893-74668912 None:intergenic 50.0%
AGAGGAAGAAGAAGAGGAGG+AGG + chr3_3:74668897-74668916 None:intergenic 50.0%
CGTAGAGGAAGAAGAAGAGG+AGG + chr3_3:74668900-74668919 None:intergenic 50.0%
CCTCTTCTTCTTCCTCTACG+CGG - chr3_3:74668900-74668919 Msa0472270:three_prime_UTR 50.0%
!! GGGTGACTTGGTCTTTATGG+AGG + chr3_3:74668960-74668979 None:intergenic 50.0%
!! GGAGGGTGACTTGGTCTTTA+TGG + chr3_3:74668963-74668982 None:intergenic 50.0%
GAATGTTGTGGAGGGTGACT+TGG + chr3_3:74668972-74668991 None:intergenic 50.0%
CCCTCCACAACATTCTTGAC+AGG - chr3_3:74668977-74668996 Msa0472270:three_prime_UTR 50.0%
ACAACAACAACCAAACGCCG+CGG - chr3_3:74669046-74669065 Msa0472270:CDS 50.0%
ACAGCACGTAGAGGAGAAAG+TGG - chr3_3:74669363-74669382 Msa0472270:intron 50.0%
CAGCACGTAGAGGAGAAAGT+GGG - chr3_3:74669364-74669383 Msa0472270:intron 50.0%
AGCACGTAGAGGAGAAAGTG+GGG - chr3_3:74669365-74669384 Msa0472270:intron 50.0%
GTGAGACTATCTACTCGTGG+TGG - chr3_3:74669430-74669449 Msa0472270:intron 50.0%
AGACTATCTACTCGTGGTGG+AGG - chr3_3:74669433-74669452 Msa0472270:intron 50.0%
! ACTCGTGGTGGAGGAGAATT+TGG - chr3_3:74669442-74669461 Msa0472270:intron 50.0%
ACCTAGAACACGTAGATGCG+AGG - chr3_3:74669471-74669490 Msa0472270:intron 50.0%
ACCTCGCATCTACGTGTTCT+AGG + chr3_3:74669475-74669494 None:intergenic 50.0%
CAAGACCCTGAATCCATCCT+AGG + chr3_3:74669541-74669560 None:intergenic 50.0%
! GTTTACAAAGAGGCATGGGG+TGG - chr3_3:74669602-74669621 Msa0472270:intron 50.0%
TGATCATGGTCGCCACATGA+AGG - chr3_3:74669722-74669741 Msa0472270:CDS 50.0%
GATCATGGTCGCCACATGAA+GGG - chr3_3:74669723-74669742 Msa0472270:CDS 50.0%
GGTATTGCCATTACCCACAC+AGG - chr3_3:74669773-74669792 Msa0472270:CDS 50.0%
TCCTCATCCTGTGTGGGTAA+TGG + chr3_3:74669783-74669802 None:intergenic 50.0%
ATTACCCACACAGGATGAGG+AGG - chr3_3:74669782-74669801 Msa0472270:CDS 50.0%
TCATCCTCCTCATCCTGTGT+GGG + chr3_3:74669789-74669808 None:intergenic 50.0%
TTCATCCTCCTCATCCTGTG+TGG + chr3_3:74669790-74669809 None:intergenic 50.0%
TTGCACTAACTCCAGTTGCG+AGG - chr3_3:74670080-74670099 Msa0472270:CDS 50.0%
CTGTAAAACAGCCTCGCAAC+TGG + chr3_3:74670094-74670113 None:intergenic 50.0%
!! CAGTTGCGAGGCTGTTTTAC+AGG - chr3_3:74670092-74670111 Msa0472270:CDS 50.0%
GGAGCCTATAGTGGTTGAAC+CGG - chr3_3:74670425-74670444 Msa0472270:CDS 50.0%
TTCAACTGTGTCTCACACGC+GGG + chr3_3:74668690-74668709 None:intergenic 50.0%
GAAGAAGAAGAGGAGGAGGA+TGG + chr3_3:74668893-74668912 None:intergenic 50.0%
AGAGGAAGAAGAAGAGGAGG+AGG + chr3_3:74668897-74668916 None:intergenic 50.0%
CGTAGAGGAAGAAGAAGAGG+AGG + chr3_3:74668900-74668919 None:intergenic 50.0%
CCTCTTCTTCTTCCTCTACG+CGG - chr3_3:74668900-74668919 Msa0472270:three_prime_UTR 50.0%
!! GGGTGACTTGGTCTTTATGG+AGG + chr3_3:74668960-74668979 None:intergenic 50.0%
!! GGAGGGTGACTTGGTCTTTA+TGG + chr3_3:74668963-74668982 None:intergenic 50.0%
GAATGTTGTGGAGGGTGACT+TGG + chr3_3:74668972-74668991 None:intergenic 50.0%
CCCTCCACAACATTCTTGAC+AGG - chr3_3:74668977-74668996 Msa0472270:three_prime_UTR 50.0%
ACAACAACAACCAAACGCCG+CGG - chr3_3:74669046-74669065 Msa0472270:CDS 50.0%
ACAGCACGTAGAGGAGAAAG+TGG - chr3_3:74669363-74669382 Msa0472270:intron 50.0%
CAGCACGTAGAGGAGAAAGT+GGG - chr3_3:74669364-74669383 Msa0472270:intron 50.0%
AGCACGTAGAGGAGAAAGTG+GGG - chr3_3:74669365-74669384 Msa0472270:intron 50.0%
GTGAGACTATCTACTCGTGG+TGG - chr3_3:74669430-74669449 Msa0472270:intron 50.0%
AGACTATCTACTCGTGGTGG+AGG - chr3_3:74669433-74669452 Msa0472270:intron 50.0%
! ACTCGTGGTGGAGGAGAATT+TGG - chr3_3:74669442-74669461 Msa0472270:intron 50.0%
ACCTAGAACACGTAGATGCG+AGG - chr3_3:74669471-74669490 Msa0472270:intron 50.0%
ACCTCGCATCTACGTGTTCT+AGG + chr3_3:74669475-74669494 None:intergenic 50.0%
CAAGACCCTGAATCCATCCT+AGG + chr3_3:74669541-74669560 None:intergenic 50.0%
! GTTTACAAAGAGGCATGGGG+TGG - chr3_3:74669602-74669621 Msa0472270:intron 50.0%
TGATCATGGTCGCCACATGA+AGG - chr3_3:74669722-74669741 Msa0472270:CDS 50.0%
GATCATGGTCGCCACATGAA+GGG - chr3_3:74669723-74669742 Msa0472270:CDS 50.0%
GGTATTGCCATTACCCACAC+AGG - chr3_3:74669773-74669792 Msa0472270:CDS 50.0%
TCCTCATCCTGTGTGGGTAA+TGG + chr3_3:74669783-74669802 None:intergenic 50.0%
ATTACCCACACAGGATGAGG+AGG - chr3_3:74669782-74669801 Msa0472270:CDS 50.0%
TCATCCTCCTCATCCTGTGT+GGG + chr3_3:74669789-74669808 None:intergenic 50.0%
TTCATCCTCCTCATCCTGTG+TGG + chr3_3:74669790-74669809 None:intergenic 50.0%
TTGCACTAACTCCAGTTGCG+AGG - chr3_3:74670080-74670099 Msa0472270:CDS 50.0%
CTGTAAAACAGCCTCGCAAC+TGG + chr3_3:74670094-74670113 None:intergenic 50.0%
!! CAGTTGCGAGGCTGTTTTAC+AGG - chr3_3:74670092-74670111 Msa0472270:CDS 50.0%
GGAGCCTATAGTGGTTGAAC+CGG - chr3_3:74670425-74670444 Msa0472270:CDS 50.0%
CCGCGTAGAGGAAGAAGAAG+AGG + chr3_3:74668903-74668922 None:intergenic 55.0%
!! TACAGAAAGGCACCGCGTAG+AGG + chr3_3:74668915-74668934 None:intergenic 55.0%
TGCGGTGAAACAGCACGTAG+AGG - chr3_3:74669354-74669373 Msa0472270:CDS 55.0%
GGTGGAGGAGAATTTGGTCG+AGG - chr3_3:74669448-74669467 Msa0472270:intron 55.0%
GCCATTACCCACACAGGATG+AGG - chr3_3:74669779-74669798 Msa0472270:CDS 55.0%
CCGCGTAGAGGAAGAAGAAG+AGG + chr3_3:74668903-74668922 None:intergenic 55.0%
!! TACAGAAAGGCACCGCGTAG+AGG + chr3_3:74668915-74668934 None:intergenic 55.0%
TGCGGTGAAACAGCACGTAG+AGG - chr3_3:74669354-74669373 Msa0472270:CDS 55.0%
GGTGGAGGAGAATTTGGTCG+AGG - chr3_3:74669448-74669467 Msa0472270:intron 55.0%
GCCATTACCCACACAGGATG+AGG - chr3_3:74669779-74669798 Msa0472270:CDS 55.0%
ACAACAACCAAACGCCGCGG+CGG - chr3_3:74669049-74669068 Msa0472270:CDS 60.0%
! CAAAGAGGCATGGGGTGGTG+CGG - chr3_3:74669607-74669626 Msa0472270:intron 60.0%
! AAAGAGGCATGGGGTGGTGC+GGG - chr3_3:74669608-74669627 Msa0472270:intron 60.0%
ACAACAACCAAACGCCGCGG+CGG - chr3_3:74669049-74669068 Msa0472270:CDS 60.0%
! CAAAGAGGCATGGGGTGGTG+CGG - chr3_3:74669607-74669626 Msa0472270:intron 60.0%
! AAAGAGGCATGGGGTGGTGC+GGG - chr3_3:74669608-74669627 Msa0472270:intron 60.0%
! GGTGCGGGCTGAGGAACATG+CGG - chr3_3:74669623-74669642 Msa0472270:intron 65.0%
! GGTGCGGGCTGAGGAACATG+CGG - chr3_3:74669623-74669642 Msa0472270:intron 65.0%
AAACGCCGCGGCGGCAGCAG+CGG - chr3_3:74669058-74669077 Msa0472270:CDS 75.0%
! GCATGGGGTGGTGCGGGCTG+AGG - chr3_3:74669614-74669633 Msa0472270:intron 75.0%
AAACGCCGCGGCGGCAGCAG+CGG - chr3_3:74669058-74669077 Msa0472270:CDS 75.0%
! GCATGGGGTGGTGCGGGCTG+AGG - chr3_3:74669614-74669633 Msa0472270:intron 75.0%
! GCTGCTGCCGCCGCGGCGTT+TGG + chr3_3:74669059-74669078 None:intergenic 80.0%
! AACCGCCGCTGCTGCCGCCG+CGG + chr3_3:74669066-74669085 None:intergenic 80.0%
! GCTGCTGCCGCCGCGGCGTT+TGG + chr3_3:74669059-74669078 None:intergenic 80.0%
! AACCGCCGCTGCTGCCGCCG+CGG + chr3_3:74669066-74669085 None:intergenic 80.0%
! CGCCGCGGCGGCAGCAGCGG+CGG - chr3_3:74669061-74669080 Msa0472270:CDS 90.0%
! CGCCGCGGCGGCAGCAGCGG+CGG - chr3_3:74669061-74669080 Msa0472270:CDS 90.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 74668667 74670824 74668667 ID=Msa0472270;Name=Msa0472270
chr3_3 mRNA 74668667 74670824 74668667 ID=Msa0472270-mRNA-1;Parent=Msa0472270;Name=Msa0472270-mRNA-1;_AED=0.09;_eAED=0.09;_QI=181|1|1|1|1|1|5|351|321
chr3_3 exon 74668667 74669148 74668667 ID=Msa0472270-mRNA-1:exon:19143;Parent=Msa0472270-mRNA-1
chr3_3 exon 74669269 74669377 74669269 ID=Msa0472270-mRNA-1:exon:19142;Parent=Msa0472270-mRNA-1
chr3_3 exon 74669634 74669897 74669634 ID=Msa0472270-mRNA-1:exon:19141;Parent=Msa0472270-mRNA-1
chr3_3 exon 74669999 74670145 74669999 ID=Msa0472270-mRNA-1:exon:19140;Parent=Msa0472270-mRNA-1
chr3_3 exon 74670329 74670824 74670329 ID=Msa0472270-mRNA-1:exon:19139;Parent=Msa0472270-mRNA-1
chr3_3 five_prime_UTR 74670644 74670824 74670644 ID=Msa0472270-mRNA-1:five_prime_utr;Parent=Msa0472270-mRNA-1
chr3_3 CDS 74670329 74670643 74670329 ID=Msa0472270-mRNA-1:cds;Parent=Msa0472270-mRNA-1
chr3_3 CDS 74669999 74670145 74669999 ID=Msa0472270-mRNA-1:cds;Parent=Msa0472270-mRNA-1
chr3_3 CDS 74669634 74669897 74669634 ID=Msa0472270-mRNA-1:cds;Parent=Msa0472270-mRNA-1
chr3_3 CDS 74669269 74669377 74669269 ID=Msa0472270-mRNA-1:cds;Parent=Msa0472270-mRNA-1
chr3_3 CDS 74669018 74669148 74669018 ID=Msa0472270-mRNA-1:cds;Parent=Msa0472270-mRNA-1
chr3_3 three_prime_UTR 74668667 74669017 74668667 ID=Msa0472270-mRNA-1:three_prime_utr;Parent=Msa0472270-mRNA-1
Gene Sequence

>Msa0472270

ATGTCAATGGCGACTCCCTTCAACTTCCACACAAACCTTTTTCCATCCTCCTCCTCTTCTTCTTCCTCTACGCGGTGCCTTTCTGTACTCTCTCTTCCTCCTCTACCTTCCTCCATAAAGACCAAGTCACCCTCCACAACATTCTTGACAGGAGAAGGAGGCACATCACAGTTGCTGAAATTGAAGTATGCCGCCACAACAACAACAACCAAACGCCGCGGCGGCAGCAGCGGCGGTTTAGTCTCCGTTGTTTGTATGTCATGGGACGGTCCACTCTCTTCCGTCAAATTAATCATCCAGGGTAAAAATATGCAGCTGAATGATGCGGTGAAACAGCACGTAGAGGAGAAAGTGGGGAGAGCAGTTCAGAAGCACAGCTACTTAGTAAGAGAAGTTGATGTGAGACTATCTACTCGTGGTGGAGGAGAATTTGGTCGAGGACCTAGAACACGTAGATGCGAGGTTACTTTGTTTACAAAGAGGCATGGGGTGGTGCGGGCTGAGGAACATGCGGAAACTACCTATGCGAGTATAGATTTGGTGTCCTCGGTCATTCAAAGAAAGCTGAGAAAGATTAAGGAAAAAGAAACTGATCATGGTCGCCACATGAAGGGATCTAATAGGTTGAAATTTAGAGAGGCGGTATTGCCATTACCCACACAGGATGAGGAGGATGAAACTGAAATCTCCCCACAAAAGGAGGAAGAAGAAGAACTTATTGAGGAGGTTGTTCGGACAAAATACTTTGACATGCCTCCTTTAACCGTGTTTGAAGCAATTGACCAGTTGGAAATGGTTGCTCATGACTTCTATGCTTTTCGAAATGAAGAATCTGGGGAGGTTAATATTGTATACAAAAGAAAAGAAGGAGGTTATGGACTCATTATTCCCAAAGGAAACGGTGAAGCAGATAAATTGGAGCCTATAGTGGTTGAACCGGCTAAAGAACCCTCTCTACAAGAATGA

Protein sequence

>Msa0472270

MSMATPFNFHTNLFPSSSSSSSSTRCLSVLSLPPLPSSIKTKSPSTTFLTGEGGTSQLLKLKYAATTTTTKRRGGSSGGLVSVVCMSWDGPLSSVKLIIQGKNMQLNDAVKQHVEEKVGRAVQKHSYLVREVDVRLSTRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEHAETTYASIDLVSSVIQRKLRKIKEKETDHGRHMKGSNRLKFREAVLPLPTQDEEDETEISPQKEEEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVAHDFYAFRNEESGEVNIVYKRKEGGYGLIIPKGNGEADKLEPIVVEPAKEPSLQE*