AlfalfaGEDB | Msa0626820

M. sativa cultivar zhongmu-4 / Msa0626820

KEGG: -
GO: -
PFAM: PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0626820	XP_003604348.4	89.601	577	17	1	1	534	1	577	0.0	1003

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0626820	sp\|Q8BID8\|FXL14_MOUSE	34.395	314	178	18	230	516	85	397	7.05e-18	89.4
Msa0626820	sp\|Q8BID8\|FXL14_MOUSE	31.190	311	164	16	182	442	86	396	4.74e-15	80.5
Msa0626820	sp\|Q8BID8\|FXL14_MOUSE	31.746	315	190	16	105	394	82	396	1.07e-14	79.7

Showing 1 to 3 of 3 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006390	Msa0626820	0.801299	9.612740e-49	-8.615850e-47
Msa0011170	Msa0626820	0.819228	1.296889e-52	-8.615850e-47
Msa0032110	Msa0626820	0.801711	7.916177e-49	-8.615850e-47
Msa0034490	Msa0626820	0.856957	2.263353e-62	-8.615850e-47
Msa0074700	Msa0626820	0.820604	6.282162e-53	-8.615850e-47
Msa0079070	Msa0626820	0.801182	1.015821e-48	-8.615850e-47
Msa0090340	Msa0626820	0.826827	2.190579e-54	-8.615850e-47
Msa0114060	Msa0626820	0.814655	1.379683e-51	-8.615850e-47
Msa0127650	Msa0626820	0.811312	7.456308e-51	-8.615850e-47
Msa0170320	Msa0626820	0.812056	5.135985e-51	-8.615850e-47

Showing 1 to 10 of 105 entries

Previous1 2 3 4 5…11Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0626820	MtrunA17_Chr4g0003031	89.601	577	17	1	1	534	1	577	0.0	1003
Msa0626820	MtrunA17_Chr4g0064941	58.997	578	191	4	1	534	1	576	0.0	614
Msa0626820	MtrunA17_Chr8g0388071	29.176	425	243	12	89	458	61	482	4.06e-22	100
Msa0626820	MtrunA17_Chr8g0388071	25.791	411	267	9	144	521	67	472	1.48e-19	92.0
Msa0626820	MtrunA17_Chr4g0004901	27.198	489	276	20	83	507	170	642	1.76e-14	76.6

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0626820	AT1G15740.1	64.533	578	161	2	1	534	8	585	0.0	649
Msa0626820	AT4G23840.1	29.953	424	241	10	142	521	66	477	3.63e-25	110

Showing 1 to 2 of 2 entries

Previous1Next

Find 134 sgRNAs with CRISPR-Local

Find 656 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTGGAGTTAATTGC+TGG	0.470627	4_3:-6866152	Msa0626820:intron
AAACAGAATTCAAGAATCTG+AGG	0.586780	4_3:-6866283	Msa0626820:intron
AAACTTGAGATCTCTGACGT+TGG	0.470253	4_3:-6865253	Msa0626820:CDS
AAAGTTGAAAGTATTAAACT+TGG	0.469983	4_3:-6869282	Msa0626820:CDS
AACCTTGATTCATGTAAGAT+TGG	0.403335	4_3:-6869010	Msa0626820:CDS
AACGAGCCACGTCACATTCG+CGG	0.514383	4_3:-6875384	Msa0626820:five_prime_UTR
AACTGTTACCGTGACATGAT+CGG	0.548392	4_3:+6875189	None:intergenic
AACTTGGGATTTAATGACAT+AGG	0.577016	4_3:-6869266	Msa0626820:CDS
AAGATTCAAAGAAACCAACG+CGG	0.845026	4_3:+6865326	None:intergenic
AAGCTTTCGGCCAGAGTAGG+TGG	0.552258	4_3:-6865166	Msa0626820:exon

Showing 1 to 10 of 134 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TAAAACACCGGAAAAAAATC+AGG	+	chr4_3:6865144-6865163	None:intergenic	30.0%
TTATGGTTCATCTTACTAAG+AGG	+	chr4_3:6865573-6865592	None:intergenic	30.0%
TTTCTTTAACAGGGTGAAAT+TGG	-	chr4_3:6865707-6865726	Msa0626820:intron	30.0%
TTTGGTTATTGAATGGATGA+TGG	-	chr4_3:6865745-6865764	Msa0626820:intron	30.0%
AATGAAGATGTTCTTACTAG+AGG	-	chr4_3:6865858-6865877	Msa0626820:intron	30.0%
TCAAGGAAATATTGCAAATG+TGG	-	chr4_3:6865885-6865904	Msa0626820:intron	30.0%
CAAGGAAATATTGCAAATGT+GGG	-	chr4_3:6865886-6865905	Msa0626820:intron	30.0%
ATGGATTTACGCTTACAAAA+TGG	-	chr4_3:6865948-6865967	Msa0626820:intron	30.0%
TAAATCATATAGGCTCTGTT+TGG	-	chr4_3:6866230-6866249	Msa0626820:CDS	30.0%
TAAGTCATACACTCAAAATG+TGG	+	chr4_3:6866261-6866280	None:intergenic	30.0%

Showing 1 to 10 of 656 entries

Previous1 2 3 4 5…66Next

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	6864880	6875409	6864880	ID=Msa0626820;Name=Msa0626820
chr4_3	mRNA	6864880	6875409	6864880	ID=Msa0626820-mRNA-1;Parent=Msa0626820;Name=Msa0626820-mRNA-1;_AED=0.26;_eAED=0.26;_QI=315\|0.92\|1\|1\|0.92\|0.86\|15\|290\|534
chr4_3	exon	6864880	6865354	6864880	ID=Msa0626820-mRNA-1:exon:1980;Parent=Msa0626820-mRNA-1
chr4_3	exon	6866153	6866299	6866153	ID=Msa0626820-mRNA-1:exon:1979;Parent=Msa0626820-mRNA-1
chr4_3	exon	6866842	6866913	6866842	ID=Msa0626820-mRNA-1:exon:1978;Parent=Msa0626820-mRNA-1
chr4_3	exon	6867584	6867727	6867584	ID=Msa0626820-mRNA-1:exon:1977;Parent=Msa0626820-mRNA-1
chr4_3	exon	6868291	6868362	6868291	ID=Msa0626820-mRNA-1:exon:1976;Parent=Msa0626820-mRNA-1
chr4_3	exon	6868984	6869055	6868984	ID=Msa0626820-mRNA-1:exon:1975;Parent=Msa0626820-mRNA-1
chr4_3	exon	6869240	6869311	6869240	ID=Msa0626820-mRNA-1:exon:1974;Parent=Msa0626820-mRNA-1
chr4_3	exon	6869460	6869531	6869460	ID=Msa0626820-mRNA-1:exon:1973;Parent=Msa0626820-mRNA-1
chr4_3	exon	6870354	6870425	6870354	ID=Msa0626820-mRNA-1:exon:1972;Parent=Msa0626820-mRNA-1
chr4_3	exon	6870983	6871054	6870983	ID=Msa0626820-mRNA-1:exon:1971;Parent=Msa0626820-mRNA-1
chr4_3	exon	6871485	6871559	6871485	ID=Msa0626820-mRNA-1:exon:1970;Parent=Msa0626820-mRNA-1
chr4_3	exon	6871795	6871941	6871795	ID=Msa0626820-mRNA-1:exon:1969;Parent=Msa0626820-mRNA-1
chr4_3	exon	6873395	6873602	6873395	ID=Msa0626820-mRNA-1:exon:1968;Parent=Msa0626820-mRNA-1
chr4_3	exon	6874273	6874570	6874273	ID=Msa0626820-mRNA-1:exon:1967;Parent=Msa0626820-mRNA-1
chr4_3	exon	6875198	6875409	6875198	ID=Msa0626820-mRNA-1:exon:1966;Parent=Msa0626820-mRNA-1
chr4_3	five_prime_UTR	6875198	6875409	6875198	ID=Msa0626820-mRNA-1:five_prime_utr;Parent=Msa0626820-mRNA-1
chr4_3	five_prime_UTR	6874468	6874570	6874468	ID=Msa0626820-mRNA-1:five_prime_utr;Parent=Msa0626820-mRNA-1
chr4_3	CDS	6874273	6874467	6874273	ID=Msa0626820-mRNA-1:cds;Parent=Msa0626820-mRNA-1
chr4_3	CDS	6873395	6873602	6873395	ID=Msa0626820-mRNA-1:cds;Parent=Msa0626820-mRNA-1
chr4_3	CDS	6871795	6871941	6871795	ID=Msa0626820-mRNA-1:cds;Parent=Msa0626820-mRNA-1
chr4_3	CDS	6871485	6871559	6871485	ID=Msa0626820-mRNA-1:cds;Parent=Msa0626820-mRNA-1
chr4_3	CDS	6870983	6871054	6870983	ID=Msa0626820-mRNA-1:cds;Parent=Msa0626820-mRNA-1
chr4_3	CDS	6870354	6870425	6870354	ID=Msa0626820-mRNA-1:cds;Parent=Msa0626820-mRNA-1
chr4_3	CDS	6869460	6869531	6869460	ID=Msa0626820-mRNA-1:cds;Parent=Msa0626820-mRNA-1
chr4_3	CDS	6869240	6869311	6869240	ID=Msa0626820-mRNA-1:cds;Parent=Msa0626820-mRNA-1
chr4_3	CDS	6868984	6869055	6868984	ID=Msa0626820-mRNA-1:cds;Parent=Msa0626820-mRNA-1
chr4_3	CDS	6868291	6868362	6868291	ID=Msa0626820-mRNA-1:cds;Parent=Msa0626820-mRNA-1
chr4_3	CDS	6867584	6867727	6867584	ID=Msa0626820-mRNA-1:cds;Parent=Msa0626820-mRNA-1
chr4_3	CDS	6866842	6866913	6866842	ID=Msa0626820-mRNA-1:cds;Parent=Msa0626820-mRNA-1
chr4_3	CDS	6866153	6866299	6866153	ID=Msa0626820-mRNA-1:cds;Parent=Msa0626820-mRNA-1
chr4_3	CDS	6865170	6865354	6865170	ID=Msa0626820-mRNA-1:cds;Parent=Msa0626820-mRNA-1
chr4_3	three_prime_UTR	6864880	6865169	6864880	ID=Msa0626820-mRNA-1:three_prime_utr;Parent=Msa0626820-mRNA-1

Gene Sequence

>Msa0626820

ATGGGTGGTGCGTGTTCGAGGAAGCAAGAGCGGGATAATGAAGATGTTCTTACTAGAGGATTTTCAAGGAAATATTGCAAATGTGGGAGTTTGAAATGGTGGACATCATCGTTTTCTTATCCGTCCATGGATTTACGCTTACAAAATGGACAATGTCCGTCACTGTTGGACTTGTGTGTCCAGAAAATAAGTGAGGATCTATACTTGGGAGAATATGCGGGTGTTGATGATTCTTGGATGGATGTCATCTCATCTCAGGGTTCATCCTTACTCTCGGTAGATCTTTCTGCGTCTGATGTCACTGATTTTGGATTGACTTACCTTCAAGATTGTCAAAGTCTCATTTCCTTAAATCTTAATTACTGTGACCAAATTTCAGATCATGGACTGGAGTGTATCAGTGGTCTGTCAAACTTGACAAGTTTGAGTTTTAGAAGAAATGATTCAATATCTGCTCAAGGAATGAGTGCCTTCTCTGGTCTTGTTAACTTGGTCAAGTTGGATTTGGAGAGATGTCCTGGGATTCATGGAGGCACTGTTCATTTTCAAGGTCTAACTAAGTTGGAATCTCTCAATATGAAGTGGTGTAATTGCATAACAGATTCCGATATGAAGCCTTTATCAGAACTTGCAAGCTTGACAAGTCTAGAGATTTCATGTAGTAAAGTCACTGATTTTGGCATCAGTTTTCTAAGAGGATTACAGAAGCTTGCCCTCTTAAATTTGGAAGGGTGTCTTGTAACATCTGCATGCTTGGATTCACTTTCAGAGCTCCCTGCACTGTCAAACTTGAATCTTAATAGATGCAATATTTCTGACAGAGGGTGTGATAGGTTTTCAAGACTGGAAAAGTTGAAAGTATTAAACTTGGGATTTAATGACATAGGAGATGCATGTTTAGCTCATTTGAAAGGATTGACAAAATTGGAGAGCTTGAACCTTGATTCATGTAAGATTGGTGATGAAGGATTGGTGAACTTGGCAGGTCATAAGCAATTGATCTGCTTGGAATTGTCTGATACTGAAGTTGGAAACAATGGCCTAGAGCATTTATCAGGATTGTCTAGTCTGGAGAAAATAAATCTGTCCTTCACTGTTGTTAGTGACAGTGGTTTAAGGAAATTGTGTGGACTCTCATCTCTGAAGTCTCTTAATTTGGATGCTTACCAAATTACTGATGCTGGACTGGCAACCCTTGCAAGTTTGACTGGCCTCACTGACCTTGATTTGTTTGGCGCTAGGATCACAGATGTTGGGACAAATTATTTGAAAAAATTCAAGAATCTGAGGTCCTTGGAAATATGCAGCGGTGGATTGACTGATGCTGGTGTGAAAAATATCAAAGAGCTTTCTTCTCTAATGTGCTTAAATTTATCACAGAACAGCAACCTTACGGACAAAACTGTGGAGTTAATTGCTGGGCTCACCGCGTTGGTTTCTTTGAATCTTTCAAATACTTGCATCACCTCTACTGGACTGCAGCATTTGAAAACTCTGAAAAACTTGAGATCTCTGACGTTGGAGTCATGTAAGGTGACAGCAAACGATTTAAAGAAATTTAAATTAATTCACCTCCCAAACTTGGTAAGCTTTCGGCCAGAGTAG

Protein sequence

>Msa0626820

MGGACSRKQERDNEDVLTRGFSRKYCKCGSLKWWTSSFSYPSMDLRLQNGQCPSLLDLCVQKISEDLYLGEYAGVDDSWMDVISSQGSSLLSVDLSASDVTDFGLTYLQDCQSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSISAQGMSAFSGLVNLVKLDLERCPGIHGGTVHFQGLTKLESLNMKWCNCITDSDMKPLSELASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRCNISDRGCDRFSRLEKLKVLNLGFNDIGDACLAHLKGLTKLESLNLDSCKIGDEGLVNLAGHKQLICLELSDTEVGNNGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAYQITDAGLATLASLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTCITSTGLQHLKTLKNLRSLTLESCKVTANDLKKFKLIHLPNLVSFRPE*