AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1388890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1388890 MtrunA17_Chr1g0148391 98.742 477 5 1 1 477 1 476 0.0 963
Msa1388890 MtrunA17_Chr3g0138741 75.630 476 115 1 2 476 6 481 0.0 756
Msa1388890 MtrunA17_Chr6g0461601 55.602 482 205 5 3 477 2 481 0.0 525
Msa1388890 MtrunA17_Chr4g0069801 57.018 456 192 4 1 453 1 455 0.0 523
Msa1388890 MtrunA17_Chr2g0306311 50.000 504 213 7 9 474 9 511 5.17e-177 506
Msa1388890 MtrunA17_Chr4g0062771 51.042 480 227 4 4 476 8 486 2.21e-176 504
Msa1388890 MtrunA17_Chr7g0253091 53.878 477 211 5 4 476 3 474 2.23e-173 496
Msa1388890 MtrunA17_Chr8g0383311 51.029 486 222 6 5 477 14 496 2.72e-172 494
Msa1388890 MtrunA17_Chr4g0076581 52.331 472 218 4 10 476 14 483 1.11e-167 482
Msa1388890 MtrunA17_Chr2g0290821 53.630 427 194 2 27 451 28 452 2.14e-163 471
Msa1388890 MtrunA17_Chr3g0129341 48.739 476 232 6 1 467 1 473 8.50e-163 469
Msa1388890 MtrunA17_Chr3g0105981 46.455 409 215 4 26 434 26 430 2.48e-129 382
Msa1388890 MtrunA17_Chr4g0034901 34.764 466 269 17 5 449 8 459 9.42e-70 229
Msa1388890 MtrunA17_Chr8g0339191 33.263 472 276 17 8 453 4 462 3.72e-68 225
Msa1388890 MtrunA17_Chr1g0161011 34.802 454 268 16 11 449 5 445 1.54e-67 224
Msa1388890 MtrunA17_Chr4g0046311 33.772 456 274 17 8 443 4 451 5.91e-67 222
Msa1388890 MtrunA17_Chr8g0389741 32.494 437 269 14 27 449 28 452 2.92e-63 213
Msa1388890 MtrunA17_Chr6g0487261 31.590 459 286 14 6 449 9 454 5.62e-63 213
Msa1388890 MtrunA17_Chr8g0378621 30.983 468 284 15 1 449 1 448 1.93e-62 211
Msa1388890 MtrunA17_Chr3g0144531 32.569 436 272 15 27 449 28 454 8.23e-60 203
Msa1388890 MtrunA17_Chr5g0434591 32.599 454 275 17 12 449 6 444 1.81e-59 203
Msa1388890 MtrunA17_Chr1g0177171 30.472 466 276 15 23 449 34 490 5.46e-59 202
Msa1388890 MtrunA17_Chr3g0121271 29.654 462 296 16 1 449 1 446 6.08e-59 201
Msa1388890 MtrunA17_Chr3g0110371 31.429 455 283 15 10 449 5 445 2.60e-58 200
Msa1388890 MtrunA17_Chr5g0439251 32.823 457 260 18 20 443 18 460 2.50e-57 197
Msa1388890 MtrunA17_Chr7g0234821 30.769 442 276 16 28 449 27 458 1.17e-56 194
Msa1388890 MtrunA17_Chr4g0003281 37.069 348 198 11 10 344 18 357 7.21e-56 191
Msa1388890 MtrunA17_Chr1g0146831 38.081 344 184 15 12 344 16 341 1.69e-54 187
Msa1388890 MtrunA17_Chr7g0250301 36.111 324 186 10 27 344 8 316 5.82e-54 183
Msa1388890 MtrunA17_Chr4g0043851 33.903 351 214 13 7 348 11 352 1.52e-53 185
Msa1388890 MtrunA17_Chr7g0223961 33.258 445 266 19 20 447 16 446 2.05e-53 186
Msa1388890 MtrunA17_Chr1g0189111 35.347 331 194 12 23 344 27 346 8.25e-53 183
Msa1388890 MtrunA17_Chr4g0038941 36.842 323 182 13 27 345 52 356 1.78e-50 175
Msa1388890 MtrunA17_Chr2g0294601 32.951 349 220 8 10 354 41 379 4.48e-50 175
Msa1388890 MtrunA17_Chr4g0075031 29.655 435 281 14 27 449 45 466 4.59e-50 178
Msa1388890 MtrunA17_Chr4g0026321 33.516 364 212 15 18 369 18 363 4.70e-50 175
Msa1388890 MtrunA17_Chr2g0294591 33.133 332 213 6 22 352 25 348 2.50e-49 172
Msa1388890 MtrunA17_Chr4g0043511 30.921 456 268 15 27 449 62 503 3.39e-49 176
Msa1388890 MtrunA17_Chr3g0119541 35.780 327 192 10 27 344 26 343 5.18e-49 172
Msa1388890 MtrunA17_Chr4g0064021 35.258 329 195 10 25 344 24 343 9.42e-49 172
Msa1388890 MtrunA17_Chr4g0039071 33.750 320 201 7 27 344 25 335 1.73e-48 171
Msa1388890 MtrunA17_Chr1g0174261 34.932 292 179 7 56 345 1 283 1.47e-46 165
Msa1388890 MtrunA17_Chr2g0285901 33.429 350 211 13 8 346 3 341 3.03e-46 165
Msa1388890 MtrunA17_Chr2g0321511 32.682 358 210 16 9 350 7 349 8.49e-46 164
Msa1388890 MtrunA17_Chr4g0039021 34.323 303 183 9 47 345 1 291 9.81e-44 155
Msa1388890 MtrunA17_Chr4g0038981 31.871 342 210 10 12 345 1 327 3.47e-43 155
Msa1388890 MtrunA17_Chr4g0038961 32.448 339 213 8 8 345 4 327 4.01e-43 155
Msa1388890 MtrunA17_Chr1g0155001 31.661 319 203 9 27 337 24 335 3.39e-41 152
Msa1388890 MtrunA17_Chr4g0038971 30.678 339 219 9 8 345 4 327 1.32e-40 148
Msa1388890 MtrunA17_Chr7g0250321 33.904 292 176 8 8 294 9 288 2.99e-40 146
Msa1388890 MtrunA17_Chr4g0039011 31.875 320 201 10 27 344 42 346 1.23e-39 146
Msa1388890 MtrunA17_Chr5g0436361 28.896 308 197 12 44 342 54 348 8.41e-28 114
Msa1388890 MtrunA17_Chr2g0294581 37.975 158 88 2 22 179 71 218 1.42e-22 97.4
Msa1388890 MtrunA17_Chr4g0018861 33.333 102 63 3 245 345 77 174 3.04e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1388890 AT4G31140.1 66.949 472 154 2 6 477 7 476 0.0 672
Msa1388890 AT5G58090.1 67.366 429 139 1 27 454 22 450 0.0 611
Msa1388890 AT5G20870.1 56.769 458 185 5 8 455 11 465 2.90e-176 504
Msa1388890 AT3G24330.1 53.043 460 209 5 8 462 20 477 1.79e-172 494
Msa1388890 AT1G64760.1 55.530 434 186 5 24 453 22 452 2.20e-166 478
Msa1388890 AT1G64760.2 55.530 434 186 5 24 453 22 452 2.20e-166 478
Msa1388890 AT5G18220.1 51.452 482 213 8 8 476 15 488 4.66e-166 478
Msa1388890 AT2G19440.2 54.018 448 199 5 10 453 4 448 6.39e-166 477
Msa1388890 AT2G19440.1 54.018 448 199 5 10 453 4 448 6.39e-166 477
Msa1388890 AT3G04010.1 54.214 439 195 4 24 458 30 466 7.08e-166 477
Msa1388890 AT5G64790.1 50.557 449 217 3 11 457 14 459 2.24e-163 471
Msa1388890 AT4G17180.1 50.333 451 212 5 3 451 2 442 2.80e-154 447
Msa1388890 AT5G58480.1 43.807 436 239 5 24 458 23 453 1.92e-128 381
Msa1388890 AT2G05790.1 34.423 459 258 16 23 449 21 468 6.41e-69 228
Msa1388890 AT2G01630.1 34.318 440 254 15 27 449 23 444 1.13e-68 228
Msa1388890 AT4G26830.1 32.450 453 280 14 12 449 10 451 3.40e-68 225
Msa1388890 AT2G01630.3 34.713 435 247 16 27 443 23 438 5.75e-68 224
Msa1388890 AT4G26830.2 32.955 440 269 14 25 449 27 455 1.65e-67 223
Msa1388890 AT5G55180.1 31.519 441 277 13 25 449 25 456 1.22e-64 216
Msa1388890 AT5G55180.2 31.724 435 272 13 25 443 25 450 1.18e-63 214
Msa1388890 AT5G56590.1 31.746 441 274 15 25 449 24 453 4.99e-62 210
Msa1388890 AT3G07320.1 32.658 444 269 17 25 449 23 455 7.86e-61 206
Msa1388890 AT3G55430.1 34.086 443 256 22 24 449 26 449 2.72e-60 204
Msa1388890 AT1G66250.1 32.110 436 268 14 27 449 32 452 3.54e-59 203
Msa1388890 AT5G24318.1 31.385 462 282 19 6 450 13 456 5.22e-58 198
Msa1388890 AT3G57270.1 36.025 322 195 7 25 344 25 337 7.21e-58 195
Msa1388890 AT1G11820.2 29.841 439 275 14 27 449 44 465 1.22e-57 199
Msa1388890 AT4G14080.1 30.872 447 270 17 27 449 42 473 1.78e-56 195
Msa1388890 AT5G24318.2 31.429 455 277 19 6 443 13 449 2.68e-56 194
Msa1388890 AT1G11820.3 29.792 433 271 14 27 443 44 459 5.66e-56 194
Msa1388890 AT3G23770.1 31.333 450 267 18 27 449 37 471 6.48e-56 193
Msa1388890 AT3G13560.4 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa1388890 AT3G13560.1 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa1388890 AT3G13560.2 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa1388890 AT3G13560.5 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa1388890 AT3G13560.3 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa1388890 AT4G29360.1 29.091 495 298 16 7 460 4 486 2.14e-54 191
Msa1388890 AT2G16230.1 32.037 437 271 14 27 449 25 449 2.16e-54 190
Msa1388890 AT3G57260.1 35.398 339 202 10 8 344 13 336 5.73e-54 184
Msa1388890 AT4G29360.2 29.150 494 297 16 8 460 15 496 6.24e-54 189
Msa1388890 AT3G57260.2 35.398 339 202 10 8 344 29 352 9.86e-54 184
Msa1388890 AT4G34480.1 32.118 439 265 15 27 449 26 447 1.70e-53 187
Msa1388890 AT2G01630.2 33.687 377 216 14 27 388 23 380 3.49e-53 184
Msa1388890 AT3G15800.1 34.615 338 208 9 14 344 30 361 2.34e-52 182
Msa1388890 AT2G39640.1 33.187 455 266 22 10 451 15 444 2.80e-52 185
Msa1388890 AT4G16260.1 32.184 348 221 9 9 352 4 340 6.01e-52 179
Msa1388890 AT4G18340.2 31.880 367 227 13 6 361 13 367 1.83e-51 179
Msa1388890 AT4G18340.1 31.880 367 227 13 6 361 13 367 4.08e-51 179
Msa1388890 AT4G16260.2 33.227 313 196 8 42 352 10 311 6.48e-50 173
Msa1388890 AT1G33220.1 34.472 322 193 10 6 320 12 322 2.62e-49 172
Msa1388890 AT1G30080.2 31.034 348 219 12 8 344 15 352 1.05e-48 172
Msa1388890 AT1G30080.1 31.034 348 219 12 8 344 15 352 1.17e-48 172
Msa1388890 AT5G20330.1 34.091 352 207 12 4 344 7 344 2.05e-48 170
Msa1388890 AT5G24318.4 33.333 348 211 14 6 346 13 346 2.82e-48 170
Msa1388890 AT5G20390.1 31.884 345 213 11 8 344 13 343 1.99e-47 167
Msa1388890 AT2G27500.2 32.927 328 202 11 26 344 28 346 2.25e-47 168
Msa1388890 AT5G42720.1 35.196 358 209 14 27 373 26 371 2.44e-47 169
Msa1388890 AT2G27500.1 32.927 328 202 11 26 344 28 346 3.52e-47 168
Msa1388890 AT1G32860.1 33.435 329 198 12 27 344 29 347 4.70e-47 168
Msa1388890 AT2G26600.1 33.030 330 203 10 24 344 31 351 8.76e-47 167
Msa1388890 AT5G20340.1 34.154 325 193 11 27 344 43 353 2.52e-46 164
Msa1388890 AT3G57240.1 33.022 321 197 7 24 342 32 336 3.16e-45 161
Msa1388890 AT5G42100.2 33.714 350 205 14 9 346 14 348 2.80e-44 161
Msa1388890 AT5G42100.1 33.714 350 205 14 9 346 14 348 3.23e-44 160
Msa1388890 AT4G34480.2 35.737 319 189 10 27 337 26 336 2.64e-43 157
Msa1388890 AT1G11820.1 29.545 352 219 11 27 365 44 379 1.71e-42 155
Msa1388890 AT3G61810.1 31.212 330 200 10 27 344 55 369 1.55e-41 152
Msa1388890 AT1G77780.1 29.345 351 229 8 8 351 1 339 3.95e-39 145
Msa1388890 AT5G20560.1 29.851 335 216 9 6 334 13 334 8.40e-39 144
Msa1388890 AT1G77790.1 29.859 355 224 12 1 344 1 341 1.13e-36 138
Msa1388890 AT2G27500.3 32.727 275 167 11 77 342 1 266 8.31e-35 132
Msa1388890 AT4G34480.3 31.232 349 209 14 117 449 3 336 1.32e-34 134
Msa1388890 AT3G46570.1 32.759 348 207 14 10 346 13 344 1.90e-34 132
Msa1388890 AT5G24318.3 29.358 327 205 13 140 450 1 317 1.36e-33 129
Msa1388890 AT3G55780.1 26.426 333 218 10 27 344 31 351 3.06e-33 130
Msa1388890 AT2G26600.2 32.707 266 161 10 88 344 1 257 1.15e-31 123

Find 131 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAATACTATTAAGATTC+TGG 0.143368 tig0021196:+120390 Msa1388890:three_prime_UTR
TTCAAAGCATCAAGAATATT+TGG 0.148229 tig0021196:-117597 None:intergenic
TGCATAGTCGACTGGAAAAT+TGG 0.169551 tig0021196:-119598 None:intergenic
ACCGATCTCTCCAACAATTA+TGG 0.179022 tig0021196:-119739 None:intergenic
ATCTTTCCGTTGTCGTTTAA+AGG 0.202599 tig0021196:-119642 None:intergenic
CGCTCTTATAAAAGCTGGTT+TGG 0.202719 tig0021196:+119389 Msa1388890:CDS
GACTAGTGCAGTCTGCATTT+TGG 0.234926 tig0021196:-120118 None:intergenic
GGATAAATGTTCACGGTAAA+TGG 0.262811 tig0021196:-119552 None:intergenic
AAATGATTTGCTTTATACTA+TGG 0.263703 tig0021196:+117653 Msa1388890:CDS
TTTGAAGAAATCTGGTATTC+AGG 0.267033 tig0021196:+117614 Msa1388890:CDS
TCTCAATGGAGTCCCCTTTC+CGG 0.272611 tig0021196:-119841 None:intergenic
GACAAAATTTCCTTAAAATC+TGG 0.273106 tig0021196:+120505 Msa1388890:three_prime_UTR
CTTGATGCTTTGAAGAAATC+TGG 0.297702 tig0021196:+117606 Msa1388890:CDS
TTTCAAAATACACCACTTCT+TGG 0.304045 tig0021196:-120042 None:intergenic
CTAACTATGATACTCTAGTA+TGG 0.317827 tig0021196:+119685 Msa1388890:CDS
CTTGGTCATTGAATTCTTGA+TGG 0.320126 tig0021196:+117392 Msa1388890:exon
AATCAGTTTGGATCATGATT+TGG 0.323082 tig0021196:-120301 None:intergenic
TTCTCCTCGCGGAATCAGTT+TGG 0.344088 tig0021196:-120313 None:intergenic
GAAATCTGGTATTCAGGTTA+TGG 0.346498 tig0021196:+117620 Msa1388890:CDS
TCTTCATAAAGACTAATAAA+AGG 0.350618 tig0021196:-119573 None:intergenic
ATAGAGACAGAAAAGGTAAT+TGG 0.352927 tig0021196:-117118 None:intergenic
GTGCAACTTGATCACTGTTC+AGG 0.355760 tig0021196:-120076 None:intergenic
CAGGTAACTTTGAACGTCAT+TGG 0.361509 tig0021196:+119925 Msa1388890:CDS
AGGTAACTTTGAACGTCATT+GGG 0.365853 tig0021196:+119926 Msa1388890:CDS
AAAAGATAAACAGATCTCTT+TGG 0.366906 tig0021196:-117215 None:intergenic
CATCTGGTGGAGTAGATATC+AGG 0.372328 tig0021196:+117733 Msa1388890:CDS
CCGATCTCTCCAACAATTAT+GGG 0.378662 tig0021196:-119738 None:intergenic
CCAATGGTGAGTTGGTATTT+CGG 0.383764 tig0021196:-119972 None:intergenic
GTTTCAGCTCATGTTTCATC+TGG 0.386117 tig0021196:+117717 Msa1388890:CDS
ACCCTTCCGATGGCGACTTT+AGG 0.386656 tig0021196:+119472 Msa1388890:CDS
GCTTGGGTGAAGGACTAAAA+TGG 0.392891 tig0021196:-117298 None:intergenic
TAGCAACTTAAAATAATTGT+TGG 0.399091 tig0021196:+120558 Msa1388890:three_prime_UTR
TTCATGACTCGATTTATTGC+CGG 0.399249 tig0021196:+119822 Msa1388890:CDS
TTCAAAATACACCACTTCTT+GGG 0.402891 tig0021196:-120041 None:intergenic
GTGAAAATGTTAAAAGATAA+TGG 0.403732 tig0021196:+117543 Msa1388890:CDS
GTGTTGGAAGTGGGTGGAAT+TGG 0.404650 tig0021196:+117471 Msa1388890:CDS
GGGTGGAATTGGAGTGAACT+GGG 0.423782 tig0021196:+117482 Msa1388890:CDS
TGGGTGGAATTGGAGTGAAC+TGG 0.426991 tig0021196:+117481 Msa1388890:CDS
ACTCGATTTATTGCCGGAAA+GGG 0.427868 tig0021196:+119828 Msa1388890:CDS
TCCATTGAGACCTGGTCCTA+TGG 0.429507 tig0021196:+119854 Msa1388890:CDS
CCCATAATTGTTGGAGAGAT+CGG 0.432044 tig0021196:+119738 Msa1388890:CDS
GATGGCGCTTGCAAATTTCC+CGG 0.432957 tig0021196:+120230 Msa1388890:CDS
AACAGATCTCTTTGGATGGC+AGG 0.439544 tig0021196:-117207 None:intergenic
GCATAGTCGACTGGAAAATT+GGG 0.440341 tig0021196:-119597 None:intergenic
GCTCTTATAAAAGCTGGTTT+GGG 0.442512 tig0021196:+119390 Msa1388890:CDS
ATAGTATAAAGCAAATCATT+TGG 0.452724 tig0021196:-117651 None:intergenic
GGTAACATGCCCATAATTGT+TGG 0.454864 tig0021196:+119729 Msa1388890:CDS
CAAAACGCTCTTATAAAAGC+TGG 0.455309 tig0021196:+119384 Msa1388890:CDS
TGCGTTTAATAGCTACTATC+AGG 0.464738 tig0021196:+120193 Msa1388890:CDS
CAGGTGAATGATCAGGTTGA+TGG 0.470214 tig0021196:+120212 Msa1388890:CDS
TCAGCTCATGTTTCATCTGG+TGG 0.473275 tig0021196:+117720 Msa1388890:CDS
CCGTTTCTGTCTCCGTCTGT+AGG 0.478583 tig0021196:-119765 None:intergenic
GATGTGTATCAGAGCTCATC+AGG 0.478752 tig0021196:+119447 Msa1388890:CDS
CTACTATCAGGTGAATGATC+AGG 0.483380 tig0021196:+120205 Msa1388890:CDS
TGATACACATCAGCATTTGA+AGG 0.486649 tig0021196:-119435 None:intergenic
GCGTTGAATAAGAATGGCTT+TGG 0.487733 tig0021196:+119708 Msa1388890:CDS
AGTTGAAGAAGAGTTTGAAA+GGG 0.489250 tig0021196:-117255 None:intergenic
GTTTGAAAGGGTATCTGAAA+AGG 0.491212 tig0021196:-117243 None:intergenic
GTCAGTGACAGTAGAAAGAC+CGG 0.491584 tig0021196:-120249 None:intergenic
TGACAGAGATCCTTCAACTC+AGG 0.492465 tig0021196:+120268 Msa1388890:CDS
AAGTTGAAGAAGAGTTTGAA+AGG 0.492902 tig0021196:-117256 None:intergenic
CCGAAATACCAACTCACCAT+TGG 0.493738 tig0021196:+119972 Msa1388890:CDS
ATCTCTTTGGATGGCAGGGA+GGG 0.495901 tig0021196:-117202 None:intergenic
CCCGTTGGTTCTTGATCCAA+TGG 0.499872 tig0021196:-119988 None:intergenic
AATGCAGACTGCACTAGTCT+TGG 0.500089 tig0021196:+120122 Msa1388890:CDS
ACCACAGTAGATGGTGGTAA+TGG 0.502268 tig0021196:-117522 None:intergenic
TCCATAGGACCAGGTCTCAA+TGG 0.502603 tig0021196:-119855 None:intergenic
CAATCTGAACCATGAGATCA+TGG 0.502886 tig0021196:-119503 None:intergenic
GTCATTGAATTCTTGATGGA+GGG 0.508940 tig0021196:+117396 Msa1388890:exon
GACTCGATTTATTGCCGGAA+AGG 0.519224 tig0021196:+119827 Msa1388890:CDS
CAATGACGTTCAAAGTTACC+TGG 0.520270 tig0021196:-119924 None:intergenic
GTCCTAAAGTCGCCATCGGA+AGG 0.521014 tig0021196:-119474 None:intergenic
TCAAGAACCAACGGGCTAGT+AGG 0.521826 tig0021196:+119996 Msa1388890:CDS
TGGAAGTGTTGTGGCTTCAA+AGG 0.524842 tig0021196:-119346 None:intergenic
TGGATAAAGTAAACTGCCAA+AGG 0.529569 tig0021196:+120429 Msa1388890:three_prime_UTR
TACAAGAGCTGGAAGTGTTG+TGG 0.534283 tig0021196:-119355 None:intergenic
GCATAGCATAGAGACAGAAA+AGG 0.535755 tig0021196:-117125 None:intergenic
GTATGGGCGTTGAATAAGAA+TGG 0.536944 tig0021196:+119702 Msa1388890:CDS
GACAGACATCCATGATCTCA+TGG 0.543777 tig0021196:+119494 Msa1388890:CDS
GGCTATGGAACTTCGTGTGG+CGG 0.546145 tig0021196:+120143 Msa1388890:CDS
TTCTTGATCCAATGGTGAGT+TGG 0.549706 tig0021196:-119980 None:intergenic
GGTCATTGAATTCTTGATGG+AGG 0.549863 tig0021196:+117395 Msa1388890:exon
ATCACTGTTCAGGTTCGCTG+AGG 0.550563 tig0021196:-120066 None:intergenic
ATTTGCCACATCATCAGTGT+TGG 0.551734 tig0021196:+117455 Msa1388890:CDS
TCTGGTATTCAGGTTATGGT+TGG 0.552421 tig0021196:+117624 Msa1388890:CDS
ACAGATCTCTTTGGATGGCA+GGG 0.555860 tig0021196:-117206 None:intergenic
CACTTCCAACACTGATGATG+TGG 0.559904 tig0021196:-117460 None:intergenic
AATAAAAGGATAAATGTTCA+CGG 0.560448 tig0021196:-119559 None:intergenic
GATAAACAGATCTCTTTGGA+TGG 0.563729 tig0021196:-117211 None:intergenic
AATGTGCAACCCTGAGTTGA+AGG 0.566126 tig0021196:-120278 None:intergenic
CTTGGGCAAATGTGCTACTC+CGG 0.568572 tig0021196:-120024 None:intergenic
TAATTGTTGGAGAGATCGGT+TGG 0.569155 tig0021196:+119742 Msa1388890:CDS
CACATCATCAGTGTTGGAAG+TGG 0.569256 tig0021196:+117461 Msa1388890:CDS
ACCATTGGATCAAGAACCAA+CGG 0.573644 tig0021196:+119987 Msa1388890:CDS
TAAATCGAGTCATGAAACCT+TGG 0.576604 tig0021196:-119815 None:intergenic
GACAGAGATCCTTCAACTCA+GGG 0.576853 tig0021196:+120269 Msa1388890:CDS
GTCTGTCCTAAAGTCGCCAT+CGG 0.577196 tig0021196:-119478 None:intergenic
TAACTATGATACTCTAGTAT+GGG 0.577250 tig0021196:+119686 Msa1388890:CDS
CCGTTGTAAGTTGACAAGAA+AGG 0.578866 tig0021196:-119321 None:intergenic
CTAAACAAGTATGCATCCAT+AGG 0.581623 tig0021196:-119870 None:intergenic
GACTGCACTAGTCTTGGCTA+TGG 0.584565 tig0021196:+120128 Msa1388890:CDS
CCTTTCTTGTCAACTTACAA+CGG 0.587520 tig0021196:+119321 Msa1388890:CDS
TCCTAAAGTCGCCATCGGAA+GGG 0.589717 tig0021196:-119473 None:intergenic
AACGGGCTAGTAGGTGCTAC+CGG 0.592787 tig0021196:+120005 Msa1388890:CDS
GATACACATCAGCATTTGAA+GGG 0.593720 tig0021196:-119434 None:intergenic
CTCGATTTATTGCCGGAAAG+GGG 0.594300 tig0021196:+119829 Msa1388890:CDS
CCATTGGATCAAGAACCAAC+GGG 0.594581 tig0021196:+119988 Msa1388890:CDS
CCTACAGACGGAGACAGAAA+CGG 0.595732 tig0021196:+119765 Msa1388890:CDS
TCACTGTTCAGGTTCGCTGA+GGG 0.597689 tig0021196:-120065 None:intergenic
CTTGGCTATGGAACTTCGTG+TGG 0.608758 tig0021196:+120140 Msa1388890:CDS
AGTGATCCTTTAAACGACAA+CGG 0.610182 tig0021196:+119636 Msa1388890:CDS
TCATCAGTGTTGGAAGTGGG+TGG 0.618212 tig0021196:+117465 Msa1388890:CDS
TAGCACATTTGCCCAAGAAG+TGG 0.619134 tig0021196:+120030 Msa1388890:CDS
AAGTATGCATCCATAGGACC+AGG 0.624541 tig0021196:-119864 None:intergenic
TCATCAGGTAACCCTTCCGA+TGG 0.628858 tig0021196:+119462 Msa1388890:CDS
GAGATCGGTTGGCCTACAGA+CGG 0.643611 tig0021196:+119753 Msa1388890:CDS
GGTAACTTTGAACGTCATTG+GGG 0.647034 tig0021196:+119927 Msa1388890:CDS
CAAAGGAAAACTGATTGTTG+AGG 0.649345 tig0021196:+120446 Msa1388890:three_prime_UTR
GATCTCTTTGGATGGCAGGG+AGG 0.651852 tig0021196:-117203 None:intergenic
GGTAGCACCTACTAGCCCGT+TGG 0.654363 tig0021196:-120003 None:intergenic
AAGGGGACTCCATTGAGACC+TGG 0.654522 tig0021196:+119846 Msa1388890:CDS
TGGCAAGCATAAGACACACT+CGG 0.661204 tig0021196:-120098 None:intergenic
ACATCATCAGTGTTGGAAGT+GGG 0.662999 tig0021196:+117462 Msa1388890:CDS
AAGAGATTCGATTCTCCTCG+CGG 0.664201 tig0021196:-120324 None:intergenic
TCCATTACCACCATCTACTG+TGG 0.670093 tig0021196:+117521 Msa1388890:CDS
GACAACAAAAGCATTCAACC+AGG 0.676173 tig0021196:+119906 Msa1388890:CDS
GGTGGAATTGGAGTGAACTG+GGG 0.692379 tig0021196:+117483 Msa1388890:CDS
TGTGGCGGTTTAGATATCCG+TGG 0.708567 tig0021196:+120158 Msa1388890:CDS
TCAGTGACAGTAGAAAGACC+GGG 0.731431 tig0021196:-120248 None:intergenic
ACGCATATGAGATGTTACCA+CGG 0.737125 tig0021196:-120175 None:intergenic
TGATCCAAACTGATTCCGCG+AGG 0.757114 tig0021196:+120309 Msa1388890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTACATCAATATAAAA+AGG - tig0021196:119101-119120 None:intergenic 10.0%
!!! TTTTATATTGATGTAAAATA+CGG + tig0021196:119101-119120 Msa1388890:intron 10.0%
!!! TATTTATTTATTCTGCATTT+TGG + tig0021196:117836-117855 Msa1388890:intron 15.0%
!!! GTAAAAAGTAAACTTTTTTA+TGG - tig0021196:117908-117927 None:intergenic 15.0%
!! AAATTAGACAAAATTTATGT+AGG + tig0021196:117973-117992 Msa1388890:intron 15.0%
!! AATTAGACAAAATTTATGTA+GGG + tig0021196:117974-117993 Msa1388890:intron 15.0%
!!! GTTAAATATGATTTTACTTA+GGG - tig0021196:118172-118191 None:intergenic 15.0%
!!! AATTCAATTTTGAAGATTAA+TGG + tig0021196:118502-118521 Msa1388890:intron 15.0%
!! TTTATATTGATGTAAAATAC+GGG + tig0021196:119102-119121 Msa1388890:intron 15.0%
!!! ATTTCATGTAATTTTTTTCA+AGG + tig0021196:119277-119296 Msa1388890:intron 15.0%
!! TCAAATATGAAGCTAAAAAA+TGG - tig0021196:117341-117360 None:intergenic 20.0%
!!! AAGTTTTGATTTTTTCAACT+TGG + tig0021196:117374-117393 Msa1388890:five_prime_UTR 20.0%
!! GTGAAAATGTTAAAAGATAA+TGG + tig0021196:117543-117562 Msa1388890:CDS 20.0%
!! ATAGTATAAAGCAAATCATT+TGG - tig0021196:117654-117673 None:intergenic 20.0%
!!! AAATGATTTGCTTTATACTA+TGG + tig0021196:117653-117672 Msa1388890:CDS 20.0%
!!! ATCACTATTTTTCTTTTGTA+GGG - tig0021196:117951-117970 None:intergenic 20.0%
!!! AATCACTATTTTTCTTTTGT+AGG - tig0021196:117952-117971 None:intergenic 20.0%
!!! GGTTAAATATGATTTTACTT+AGG - tig0021196:118173-118192 None:intergenic 20.0%
!! TTACTTTACTTGTATATAGA+TGG - tig0021196:118194-118213 None:intergenic 20.0%
!! AAACAAATAGAAAAACAAAC+AGG - tig0021196:118661-118680 None:intergenic 20.0%
!! TCTACAAATCATAGAATATT+TGG + tig0021196:118742-118761 Msa1388890:intron 20.0%
!!! GATTTTTTCAACAACTTTTT+TGG + tig0021196:118773-118792 Msa1388890:intron 20.0%
!! TTAATTAAAACATTGACAAC+AGG - tig0021196:118922-118941 None:intergenic 20.0%
!!! GTCAATGTTTTAATTAAATG+AGG + tig0021196:118925-118944 Msa1388890:intron 20.0%
!!! ATCATATATTTTTCCTTAAC+AGG - tig0021196:118987-119006 None:intergenic 20.0%
!!! TTTTTCATTTCTTAATCTGT+TGG + tig0021196:119165-119184 Msa1388890:intron 20.0%
!!! TTTTCATTTCTTAATCTGTT+GGG + tig0021196:119166-119185 Msa1388890:intron 20.0%
!!! ATTTTTTTCAAGGTATATTG+CGG + tig0021196:119287-119306 Msa1388890:intron 20.0%
!! AATAAAAGGATAAATGTTCA+CGG - tig0021196:119562-119581 None:intergenic 20.0%
!! TCTTCATAAAGACTAATAAA+AGG - tig0021196:119576-119595 None:intergenic 20.0%
!! CTTAAATACTATTAAGATTC+TGG + tig0021196:120390-120409 Msa1388890:three_prime_UTR 20.0%
!!! CTGGATTTTTAATTCATTTT+TGG + tig0021196:120409-120428 Msa1388890:three_prime_UTR 20.0%
!! TAGCAACTTAAAATAATTGT+TGG + tig0021196:120558-120577 Msa1388890:three_prime_UTR 20.0%
!!! ACTTTTATGCTTTAAAAGTG+AGG - tig0021196:117164-117183 None:intergenic 25.0%
! AAAAGATAAACAGATCTCTT+TGG - tig0021196:117218-117237 None:intergenic 25.0%
!!! TTTTTCTGTTTTTGTTGCTT+GGG - tig0021196:117317-117336 None:intergenic 25.0%
!!! TTTTTTCTGTTTTTGTTGCT+TGG - tig0021196:117318-117337 None:intergenic 25.0%
!! TTCAAAGCATCAAGAATATT+TGG - tig0021196:117600-117619 None:intergenic 25.0%
!! TGTGTTGAGTTTTTAATCTT+TGG + tig0021196:117779-117798 Msa1388890:intron 25.0%
!! ATATGATTTTACTTAGGGAA+GGG - tig0021196:118167-118186 None:intergenic 25.0%
!! AATATGATTTTACTTAGGGA+AGG - tig0021196:118168-118187 None:intergenic 25.0%
!! CAACACATCAAGTATTTTAT+TGG + tig0021196:118277-118296 Msa1388890:intron 25.0%
!! ACATCAAGTATTTTATTGGA+AGG + tig0021196:118281-118300 Msa1388890:intron 25.0%
!! AAGTATTTTATTGGAAGGAA+AGG + tig0021196:118286-118305 Msa1388890:intron 25.0%
!! AGTATTTTATTGGAAGGAAA+GGG + tig0021196:118287-118306 Msa1388890:intron 25.0%
!! TTTAGTAAGAAAGTTTTTGC+AGG + tig0021196:118339-118358 Msa1388890:intron 25.0%
!! TTTTTGCAGGAACTTTTTAT+AGG + tig0021196:118352-118371 Msa1388890:intron 25.0%
! ATTTGTAGATGAAGAATCAA+GGG - tig0021196:118731-118750 None:intergenic 25.0%
! TGATTAAATTTAGCTGCAAA+AGG + tig0021196:118846-118865 Msa1388890:intron 25.0%
! GATTAAATTTAGCTGCAAAA+GGG + tig0021196:118847-118866 Msa1388890:intron 25.0%
!! ATATGTCTTCCTAACTTTTT+GGG + tig0021196:119043-119062 Msa1388890:intron 25.0%
! AGTCATTTGTTTAACAGTTA+AGG - tig0021196:119205-119224 None:intergenic 25.0%
! TAACTATGATACTCTAGTAT+GGG + tig0021196:119686-119705 Msa1388890:CDS 25.0%
!!! AATAGTACTGTTTGCTTTTT+TGG + tig0021196:120349-120368 Msa1388890:CDS 25.0%
! GACAAAATTTCCTTAAAATC+TGG + tig0021196:120505-120524 Msa1388890:three_prime_UTR 25.0%
!! AATCTGAATTCCAGATTTTA+AGG - tig0021196:120518-120537 None:intergenic 25.0%
ATAGAGACAGAAAAGGTAAT+TGG - tig0021196:117121-117140 None:intergenic 30.0%
AGTTGAAGAAGAGTTTGAAA+GGG - tig0021196:117258-117277 None:intergenic 30.0%
AAGTTGAAGAAGAGTTTGAA+AGG - tig0021196:117259-117278 None:intergenic 30.0%
TGATGGAGGGTAAAAAATTT+AGG + tig0021196:117409-117428 Msa1388890:exon 30.0%
TTTGAAGAAATCTGGTATTC+AGG + tig0021196:117614-117633 Msa1388890:CDS 30.0%
GGTTATGATTGTTTCAAACT+AGG + tig0021196:117857-117876 Msa1388890:intron 30.0%
AGTGAAGACATATTTAACCA+AGG + tig0021196:118033-118052 Msa1388890:intron 30.0%
GTGAAGACATATTTAACCAA+GGG + tig0021196:118034-118053 Msa1388890:intron 30.0%
GACAAGTAATTTCCATACAT+CGG - tig0021196:118571-118590 None:intergenic 30.0%
! TGTGTTTGAAATCATTGACT+AGG + tig0021196:118625-118644 Msa1388890:intron 30.0%
AGTTATAATGTCTGCCAAAA+AGG + tig0021196:118699-118718 Msa1388890:intron 30.0%
TTTGTAGATGAAGAATCAAG+GGG - tig0021196:118730-118749 None:intergenic 30.0%
GATTTGTAGATGAAGAATCA+AGG - tig0021196:118732-118751 None:intergenic 30.0%
! AGATTTTATGCATGCAACAA+AGG - tig0021196:119015-119034 None:intergenic 30.0%
GTTGCATGCATAAAATCTAA+AGG + tig0021196:119017-119036 Msa1388890:intron 30.0%
! GATATGTCTTCCTAACTTTT+TGG + tig0021196:119042-119061 Msa1388890:intron 30.0%
! TATGTCTTCCTAACTTTTTG+GGG + tig0021196:119044-119063 Msa1388890:intron 30.0%
! TTTTGGATATTTACAAGAGC+TGG - tig0021196:119369-119388 None:intergenic 30.0%
CTAACTATGATACTCTAGTA+TGG + tig0021196:119685-119704 Msa1388890:CDS 30.0%
!! GATTGTTTTATTACGATGGA+CGG + tig0021196:119949-119968 Msa1388890:CDS 30.0%
TTCAAAATACACCACTTCTT+GGG - tig0021196:120044-120063 None:intergenic 30.0%
TTTCAAAATACACCACTTCT+TGG - tig0021196:120045-120064 None:intergenic 30.0%
AATCAGTTTGGATCATGATT+TGG - tig0021196:120304-120323 None:intergenic 30.0%
!!! GGAGGGACTTTTTTATGTTA+TGG - tig0021196:117188-117207 None:intergenic 35.0%
GATAAACAGATCTCTTTGGA+TGG - tig0021196:117214-117233 None:intergenic 35.0%
!! GTTTGAAAGGGTATCTGAAA+AGG - tig0021196:117246-117265 None:intergenic 35.0%
CTTGGTCATTGAATTCTTGA+TGG + tig0021196:117392-117411 Msa1388890:exon 35.0%
GTCATTGAATTCTTGATGGA+GGG + tig0021196:117396-117415 Msa1388890:exon 35.0%
! AACATTTTCACCACAGTAGA+TGG - tig0021196:117534-117553 None:intergenic 35.0%
!! CTTGATGCTTTGAAGAAATC+TGG + tig0021196:117606-117625 Msa1388890:CDS 35.0%
! GAAATCTGGTATTCAGGTTA+TGG + tig0021196:117620-117639 Msa1388890:CDS 35.0%
TGATTGTTTCAAACTAGGAG+AGG + tig0021196:117862-117881 Msa1388890:intron 35.0%
TCTCTTGAACAATTCGTCTT+TGG - tig0021196:118088-118107 None:intergenic 35.0%
! TGCAGGAACTTTTTATAGGA+TGG + tig0021196:118356-118375 Msa1388890:intron 35.0%
AGTATGTATTGCTGTGAGTT+TGG + tig0021196:118444-118463 Msa1388890:intron 35.0%
ACTAAGATACTTCCGATGTA+TGG + tig0021196:118556-118575 Msa1388890:intron 35.0%
GAAATTACTTGTCGTTCCTT+TGG + tig0021196:118578-118597 Msa1388890:intron 35.0%
GATTCCACTAAGTATTCCAA+AGG - tig0021196:118597-118616 None:intergenic 35.0%
!! CAACAGGTTGATATTTGTAC+AGG - tig0021196:118906-118925 None:intergenic 35.0%
AATTTCACACTGACCTGTTA+AGG + tig0021196:118971-118990 Msa1388890:intron 35.0%
! ATGTCTTCCTAACTTTTTGG+GGG + tig0021196:119045-119064 Msa1388890:intron 35.0%
ATGTAAAATACGGGCAATTG+CGG + tig0021196:119111-119130 Msa1388890:intron 35.0%
!! TTTTCAAGGTATATTGCGGT+TGG + tig0021196:119291-119310 Msa1388890:intron 35.0%
CCTTTCTTGTCAACTTACAA+CGG + tig0021196:119321-119340 Msa1388890:CDS 35.0%
!!! CAGCTTTTATAAGAGCGTTT+TGG - tig0021196:119386-119405 None:intergenic 35.0%
CAAAACGCTCTTATAAAAGC+TGG + tig0021196:119384-119403 Msa1388890:CDS 35.0%
! GCTCTTATAAAAGCTGGTTT+GGG + tig0021196:119390-119409 Msa1388890:CDS 35.0%
GATACACATCAGCATTTGAA+GGG - tig0021196:119437-119456 None:intergenic 35.0%
TGATACACATCAGCATTTGA+AGG - tig0021196:119438-119457 None:intergenic 35.0%
GGATAAATGTTCACGGTAAA+TGG - tig0021196:119555-119574 None:intergenic 35.0%
TTGAAAAATGCATAGTCGAC+TGG - tig0021196:119609-119628 None:intergenic 35.0%
!! GTCGACTATGCATTTTTCAA+CGG + tig0021196:119609-119628 Msa1388890:CDS 35.0%
AGTGATCCTTTAAACGACAA+CGG + tig0021196:119636-119655 Msa1388890:CDS 35.0%
! ATCTTTCCGTTGTCGTTTAA+AGG - tig0021196:119645-119664 None:intergenic 35.0%
TAAATCGAGTCATGAAACCT+TGG - tig0021196:119818-119837 None:intergenic 35.0%
TTCATGACTCGATTTATTGC+CGG + tig0021196:119822-119841 Msa1388890:CDS 35.0%
CTAAACAAGTATGCATCCAT+AGG - tig0021196:119873-119892 None:intergenic 35.0%
AGGTAACTTTGAACGTCATT+GGG + tig0021196:119926-119945 Msa1388890:CDS 35.0%
!! TGGGGATTGTTTTATTACGA+TGG + tig0021196:119945-119964 Msa1388890:CDS 35.0%
TGCGTTTAATAGCTACTATC+AGG + tig0021196:120193-120212 Msa1388890:CDS 35.0%
TGGATAAAGTAAACTGCCAA+AGG + tig0021196:120429-120448 Msa1388890:three_prime_UTR 35.0%
! CTCAACAATCAGTTTTCCTT+TGG - tig0021196:120448-120467 None:intergenic 35.0%
CAAAGGAAAACTGATTGTTG+AGG + tig0021196:120446-120465 Msa1388890:three_prime_UTR 35.0%
GCATAGCATAGAGACAGAAA+AGG - tig0021196:117128-117147 None:intergenic 40.0%
!! TGTTTTTGTTGCTTGGGTGA+AGG - tig0021196:117311-117330 None:intergenic 40.0%
GGTCATTGAATTCTTGATGG+AGG + tig0021196:117395-117414 Msa1388890:exon 40.0%
ATTTGCCACATCATCAGTGT+TGG + tig0021196:117455-117474 Msa1388890:CDS 40.0%
! ACATCATCAGTGTTGGAAGT+GGG + tig0021196:117462-117481 Msa1388890:CDS 40.0%
! ATTTTCACCACAGTAGATGG+TGG - tig0021196:117531-117550 None:intergenic 40.0%
! TCTGGTATTCAGGTTATGGT+TGG + tig0021196:117624-117643 Msa1388890:CDS 40.0%
TCGTCAAGCTGCTGAAAAAT+GGG + tig0021196:117683-117702 Msa1388890:CDS 40.0%
GTTTCAGCTCATGTTTCATC+TGG + tig0021196:117717-117736 Msa1388890:CDS 40.0%
GGAGAGGTGAGAAATTATAG+TGG + tig0021196:117878-117897 Msa1388890:intron 40.0%
!! CGTTCCTTTGGAATACTTAG+TGG + tig0021196:118590-118609 Msa1388890:intron 40.0%
GATATTTGTACAGGTGGACA+AGG - tig0021196:118897-118916 None:intergenic 40.0%
!! CAGGTTGATATTTGTACAGG+TGG - tig0021196:118903-118922 None:intergenic 40.0%
TGTAAAATACGGGCAATTGC+GGG + tig0021196:119112-119131 Msa1388890:intron 40.0%
! CCGTTGTAAGTTGACAAGAA+AGG - tig0021196:119324-119343 None:intergenic 40.0%
CGCTCTTATAAAAGCTGGTT+TGG + tig0021196:119389-119408 Msa1388890:CDS 40.0%
CAATCTGAACCATGAGATCA+TGG - tig0021196:119506-119525 None:intergenic 40.0%
GCATAGTCGACTGGAAAATT+GGG - tig0021196:119600-119619 None:intergenic 40.0%
TGCATAGTCGACTGGAAAAT+TGG - tig0021196:119601-119620 None:intergenic 40.0%
!! GTATGGGCGTTGAATAAGAA+TGG + tig0021196:119702-119721 Msa1388890:CDS 40.0%
GCGTTGAATAAGAATGGCTT+TGG + tig0021196:119708-119727 Msa1388890:CDS 40.0%
GGTAACATGCCCATAATTGT+TGG + tig0021196:119729-119748 Msa1388890:CDS 40.0%
CCGATCTCTCCAACAATTAT+GGG - tig0021196:119741-119760 None:intergenic 40.0%
CCCATAATTGTTGGAGAGAT+CGG + tig0021196:119738-119757 Msa1388890:CDS 40.0%
ACCGATCTCTCCAACAATTA+TGG - tig0021196:119742-119761 None:intergenic 40.0%
TAATTGTTGGAGAGATCGGT+TGG + tig0021196:119742-119761 Msa1388890:CDS 40.0%
ACTCGATTTATTGCCGGAAA+GGG + tig0021196:119828-119847 Msa1388890:CDS 40.0%
!! GACAACAAAAGCATTCAACC+AGG + tig0021196:119906-119925 Msa1388890:CDS 40.0%
CAATGACGTTCAAAGTTACC+TGG - tig0021196:119927-119946 None:intergenic 40.0%
CAGGTAACTTTGAACGTCAT+TGG + tig0021196:119925-119944 Msa1388890:CDS 40.0%
GGTAACTTTGAACGTCATTG+GGG + tig0021196:119927-119946 Msa1388890:CDS 40.0%
!! CCAATGGTGAGTTGGTATTT+CGG - tig0021196:119975-119994 None:intergenic 40.0%
TTCTTGATCCAATGGTGAGT+TGG - tig0021196:119983-120002 None:intergenic 40.0%
ACCATTGGATCAAGAACCAA+CGG + tig0021196:119987-120006 Msa1388890:CDS 40.0%
ACGCATATGAGATGTTACCA+CGG - tig0021196:120178-120197 None:intergenic 40.0%
CTACTATCAGGTGAATGATC+AGG + tig0021196:120205-120224 Msa1388890:CDS 40.0%
ACAGATCTCTTTGGATGGCA+GGG - tig0021196:117209-117228 None:intergenic 45.0%
AACAGATCTCTTTGGATGGC+AGG - tig0021196:117210-117229 None:intergenic 45.0%
GCTTGGGTGAAGGACTAAAA+TGG - tig0021196:117301-117320 None:intergenic 45.0%
! CACTTCCAACACTGATGATG+TGG - tig0021196:117463-117482 None:intergenic 45.0%
! CACATCATCAGTGTTGGAAG+TGG + tig0021196:117461-117480 Msa1388890:CDS 45.0%
TCCATTACCACCATCTACTG+TGG + tig0021196:117521-117540 Msa1388890:CDS 45.0%
! ACCACAGTAGATGGTGGTAA+TGG - tig0021196:117525-117544 None:intergenic 45.0%
GTCGTCAAGCTGCTGAAAAA+TGG + tig0021196:117682-117701 Msa1388890:CDS 45.0%
TCAGCTCATGTTTCATCTGG+TGG + tig0021196:117720-117739 Msa1388890:CDS 45.0%
CATCTGGTGGAGTAGATATC+AGG + tig0021196:117733-117752 Msa1388890:CDS 45.0%
TGGTGGAGTAGATATCAGGT+TGG + tig0021196:117737-117756 Msa1388890:intron 45.0%
!! ACTTCTAGAGCTCAATCCCT+TGG - tig0021196:118053-118072 None:intergenic 45.0%
TGACGGCCAACCAAATTACA+AGG + tig0021196:118140-118159 Msa1388890:intron 45.0%
GACGGCCAACCAAATTACAA+GGG + tig0021196:118141-118160 Msa1388890:intron 45.0%
AAGGGCCCTTGTAATTTGGT+TGG - tig0021196:118149-118168 None:intergenic 45.0%
GAGTCAAATGCAGAAGAGAG+GGG - tig0021196:118408-118427 None:intergenic 45.0%
CGAGTCAAATGCAGAAGAGA+GGG - tig0021196:118409-118428 None:intergenic 45.0%
CCTCTCTTCTGCATTTGACT+CGG + tig0021196:118407-118426 Msa1388890:intron 45.0%
TGTATTGCTGTGAGTTTGGC+AGG + tig0021196:118448-118467 Msa1388890:intron 45.0%
!! ATCAAGGGGCATGTCCTTTT+TGG - tig0021196:118716-118735 None:intergenic 45.0%
CTTGCTTGCACTGAATTCAG+TGG + tig0021196:118816-118835 Msa1388890:intron 45.0%
GTACAGGTGGACAAGGATTT+AGG - tig0021196:118890-118909 None:intergenic 45.0%
GTAAAATACGGGCAATTGCG+GGG + tig0021196:119113-119132 Msa1388890:intron 45.0%
!! TGGAAGTGTTGTGGCTTCAA+AGG - tig0021196:119349-119368 None:intergenic 45.0%
!! TACAAGAGCTGGAAGTGTTG+TGG - tig0021196:119358-119377 None:intergenic 45.0%
GATGTGTATCAGAGCTCATC+AGG + tig0021196:119447-119466 Msa1388890:CDS 45.0%
GACAGACATCCATGATCTCA+TGG + tig0021196:119494-119513 Msa1388890:CDS 45.0%
GACTCGATTTATTGCCGGAA+AGG + tig0021196:119827-119846 Msa1388890:CDS 45.0%
CTCGATTTATTGCCGGAAAG+GGG + tig0021196:119829-119848 Msa1388890:CDS 45.0%
AAGTATGCATCCATAGGACC+AGG - tig0021196:119867-119886 None:intergenic 45.0%
CCGAAATACCAACTCACCAT+TGG + tig0021196:119972-119991 Msa1388890:CDS 45.0%
CCATTGGATCAAGAACCAAC+GGG + tig0021196:119988-120007 Msa1388890:CDS 45.0%
TAGCACATTTGCCCAAGAAG+TGG + tig0021196:120030-120049 Msa1388890:CDS 45.0%
GTGCAACTTGATCACTGTTC+AGG - tig0021196:120079-120098 None:intergenic 45.0%
TGGCAAGCATAAGACACACT+CGG - tig0021196:120101-120120 None:intergenic 45.0%
! GACTAGTGCAGTCTGCATTT+TGG - tig0021196:120121-120140 None:intergenic 45.0%
! AATGCAGACTGCACTAGTCT+TGG + tig0021196:120122-120141 Msa1388890:CDS 45.0%
!! CAGGTGAATGATCAGGTTGA+TGG + tig0021196:120212-120231 Msa1388890:CDS 45.0%
TCAGTGACAGTAGAAAGACC+GGG - tig0021196:120251-120270 None:intergenic 45.0%
GTCAGTGACAGTAGAAAGAC+CGG - tig0021196:120252-120271 None:intergenic 45.0%
TGACAGAGATCCTTCAACTC+AGG + tig0021196:120268-120287 Msa1388890:CDS 45.0%
GACAGAGATCCTTCAACTCA+GGG + tig0021196:120269-120288 Msa1388890:CDS 45.0%
! AATGTGCAACCCTGAGTTGA+AGG - tig0021196:120281-120300 None:intergenic 45.0%
AAGAGATTCGATTCTCCTCG+CGG - tig0021196:120327-120346 None:intergenic 45.0%
ATCTCTTTGGATGGCAGGGA+GGG - tig0021196:117205-117224 None:intergenic 50.0%
! TCATCAGTGTTGGAAGTGGG+TGG + tig0021196:117465-117484 Msa1388890:CDS 50.0%
GTGTTGGAAGTGGGTGGAAT+TGG + tig0021196:117471-117490 Msa1388890:CDS 50.0%
TGGGTGGAATTGGAGTGAAC+TGG + tig0021196:117481-117500 Msa1388890:CDS 50.0%
GGGTGGAATTGGAGTGAACT+GGG + tig0021196:117482-117501 Msa1388890:CDS 50.0%
GGTGGAATTGGAGTGAACTG+GGG + tig0021196:117483-117502 Msa1388890:CDS 50.0%
GAGAACCTGAGTTCGATTCC+TGG + tig0021196:118104-118123 Msa1388890:intron 50.0%
ACCTGAGTTCGATTCCTGGT+TGG + tig0021196:118108-118127 Msa1388890:intron 50.0%
CCTGAGTTCGATTCCTGGTT+GGG + tig0021196:118109-118128 Msa1388890:intron 50.0%
CTGGTTGGGACGATTCTTGA+CGG + tig0021196:118123-118142 Msa1388890:intron 50.0%
AGGGAAGGGCCCTTGTAATT+TGG - tig0021196:118153-118172 None:intergenic 50.0%
CCGAGTCAAATGCAGAAGAG+AGG - tig0021196:118410-118429 None:intergenic 50.0%
CACTCAGCCCCCAAAAAGTT+AGG - tig0021196:119055-119074 None:intergenic 50.0%
TCATCAGGTAACCCTTCCGA+TGG + tig0021196:119462-119481 Msa1388890:CDS 50.0%
TCCTAAAGTCGCCATCGGAA+GGG - tig0021196:119476-119495 None:intergenic 50.0%
GTCTGTCCTAAAGTCGCCAT+CGG - tig0021196:119481-119500 None:intergenic 50.0%
CCTACAGACGGAGACAGAAA+CGG + tig0021196:119765-119784 Msa1388890:CDS 50.0%
!! CTCGCGCAACGTTTTAACCA+AGG + tig0021196:119798-119817 Msa1388890:CDS 50.0%
TCTCAATGGAGTCCCCTTTC+CGG - tig0021196:119844-119863 None:intergenic 50.0%
TCCATTGAGACCTGGTCCTA+TGG + tig0021196:119854-119873 Msa1388890:CDS 50.0%
TCCATAGGACCAGGTCTCAA+TGG - tig0021196:119858-119877 None:intergenic 50.0%
!! CCCGTTGGTTCTTGATCCAA+TGG - tig0021196:119991-120010 None:intergenic 50.0%
!! TCAAGAACCAACGGGCTAGT+AGG + tig0021196:119996-120015 Msa1388890:CDS 50.0%
! CTTGGGCAAATGTGCTACTC+CGG - tig0021196:120027-120046 None:intergenic 50.0%
! TCACTGTTCAGGTTCGCTGA+GGG - tig0021196:120068-120087 None:intergenic 50.0%
! ATCACTGTTCAGGTTCGCTG+AGG - tig0021196:120069-120088 None:intergenic 50.0%
!! GACTGCACTAGTCTTGGCTA+TGG + tig0021196:120128-120147 Msa1388890:CDS 50.0%
CTTGGCTATGGAACTTCGTG+TGG + tig0021196:120140-120159 Msa1388890:CDS 50.0%
TGTGGCGGTTTAGATATCCG+TGG + tig0021196:120158-120177 Msa1388890:CDS 50.0%
GATGGCGCTTGCAAATTTCC+CGG + tig0021196:120230-120249 Msa1388890:CDS 50.0%
! TGATCCAAACTGATTCCGCG+AGG + tig0021196:120309-120328 Msa1388890:CDS 50.0%
TTCTCCTCGCGGAATCAGTT+TGG - tig0021196:120316-120335 None:intergenic 50.0%
GATCTCTTTGGATGGCAGGG+AGG - tig0021196:117206-117225 None:intergenic 55.0%
CCCAACCAGGAATCGAACTC+AGG - tig0021196:118112-118131 None:intergenic 55.0%
CGTCAAGAATCGTCCCAACC+AGG - tig0021196:118125-118144 None:intergenic 55.0%
!! CTTTTTGGGGGCTGAGTGCA+TGG + tig0021196:119057-119076 Msa1388890:intron 55.0%
ACCCTTCCGATGGCGACTTT+AGG + tig0021196:119472-119491 Msa1388890:CDS 55.0%
GTCCTAAAGTCGCCATCGGA+AGG - tig0021196:119477-119496 None:intergenic 55.0%
!! GAGATCGGTTGGCCTACAGA+CGG + tig0021196:119753-119772 Msa1388890:CDS 55.0%
CCGTTTCTGTCTCCGTCTGT+AGG - tig0021196:119768-119787 None:intergenic 55.0%
AAGGGGACTCCATTGAGACC+TGG + tig0021196:119846-119865 Msa1388890:CDS 55.0%
!! AACGGGCTAGTAGGTGCTAC+CGG + tig0021196:120005-120024 Msa1388890:CDS 55.0%
GGCTATGGAACTTCGTGTGG+CGG + tig0021196:120143-120162 Msa1388890:CDS 55.0%
GGTAGCACCTACTAGCCCGT+TGG - tig0021196:120006-120025 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0021196 gene 117106 120581 117106 ID=Msa1388890;Name=Msa1388890
tig0021196 mRNA 117106 120581 117106 ID=Msa1388890-mRNA-1;Parent=Msa1388890;Name=Msa1388890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=305|1|1|1|1|1|2|193|477
tig0021196 exon 117106 117754 117106 ID=Msa1388890-mRNA-1:exon:11321;Parent=Msa1388890-mRNA-1
tig0021196 exon 119299 120581 119299 ID=Msa1388890-mRNA-1:exon:11322;Parent=Msa1388890-mRNA-1
tig0021196 five_prime_UTR 117106 117410 117106 ID=Msa1388890-mRNA-1:five_prime_utr;Parent=Msa1388890-mRNA-1
tig0021196 CDS 117411 117754 117411 ID=Msa1388890-mRNA-1:cds;Parent=Msa1388890-mRNA-1
tig0021196 CDS 119299 120388 119299 ID=Msa1388890-mRNA-1:cds;Parent=Msa1388890-mRNA-1
tig0021196 three_prime_UTR 120389 120581 120389 ID=Msa1388890-mRNA-1:three_prime_utr;Parent=Msa1388890-mRNA-1
Gene Sequence

>Msa1388890

ATGGAGGGTAAAAAATTTAGGATATGTTTAGTTCTTATGATGTTATTTGCCACATCATCAGTGTTGGAAGTGGGTGGAATTGGAGTGAACTGGGGAACACAGTCAACACATCCATTACCACCATCTACTGTGGTGAAAATGTTAAAAGATAATGGTATTCAAAAAGTTAAGCTTTTTGATGCTGATCCAAATATTCTTGATGCTTTGAAGAAATCTGGTATTCAGGTTATGGTTGGTATACCAAATGATTTGCTTTATACTATGGCTAATAGTCGTCAAGCTGCTGAAAAATGGGTTGCTAAGAATGTTTCAGCTCATGTTTCATCTGGTGGAGTAGATATCAGGTATATTGCGGTTGGAAATGAACCTTTCTTGTCAACTTACAACGGTACCTTTGAAGCCACAACACTTCCAGCTCTTGTAAATATCCAAAACGCTCTTATAAAAGCTGGTTTGGGAAGTTCAATCAAAGTCACTGTCCCTTCAAATGCTGATGTGTATCAGAGCTCATCAGGTAACCCTTCCGATGGCGACTTTAGGACAGACATCCATGATCTCATGGTTCAGATTGTCAAGTTTTTGAGTCAGAACAATGCTCCATTTACCGTGAACATTTATCCTTTTATTAGTCTTTATGAAGATCCCAATTTTCCAGTCGACTATGCATTTTTCAACGGTTTTAGTGATCCTTTAAACGACAACGGAAAGATCTACGACAATGTCTTTGATGCTAACTATGATACTCTAGTATGGGCGTTGAATAAGAATGGCTTTGGTAACATGCCCATAATTGTTGGAGAGATCGGTTGGCCTACAGACGGAGACAGAAACGGAAATCTTCAACTCGCGCAACGTTTTAACCAAGGTTTCATGACTCGATTTATTGCCGGAAAGGGGACTCCATTGAGACCTGGTCCTATGGATGCATACTTGTTTAGTTTAGTAGATGAAGACAACAAAAGCATTCAACCAGGTAACTTTGAACGTCATTGGGGATTGTTTTATTACGATGGACGGCCGAAATACCAACTCACCATTGGATCAAGAACCAACGGGCTAGTAGGTGCTACCGGAGTAGCACATTTGCCCAAGAAGTGGTGTATTTTGAAACCCTCAGCGAACCTGAACAGTGATCAAGTTGCACCGAGTGTGTCTTATGCTTGCCAAAATGCAGACTGCACTAGTCTTGGCTATGGAACTTCGTGTGGCGGTTTAGATATCCGTGGTAACATCTCATATGCGTTTAATAGCTACTATCAGGTGAATGATCAGGTTGATGGCGCTTGCAAATTTCCCGGTCTTTCTACTGTCACTGACAGAGATCCTTCAACTCAGGGTTGCACATTCCAAATCATGATCCAAACTGATTCCGCGAGGAGAATCGAATCTCTTAGAATAGTACTGTTTGCTTTTTTGGTTGTTGCTTTTTTGTAA
Protein sequence

>Msa1388890

MEGKKFRICLVLMMLFATSSVLEVGGIGVNWGTQSTHPLPPSTVVKMLKDNGIQKVKLFDADPNILDALKKSGIQVMVGIPNDLLYTMANSRQAAEKWVAKNVSAHVSSGGVDIRYIAVGNEPFLSTYNGTFEATTLPALVNIQNALIKAGLGSSIKVTVPSNADVYQSSSGNPSDGDFRTDIHDLMVQIVKFLSQNNAPFTVNIYPFISLYEDPNFPVDYAFFNGFSDPLNDNGKIYDNVFDANYDTLVWALNKNGFGNMPIIVGEIGWPTDGDRNGNLQLAQRFNQGFMTRFIAGKGTPLRPGPMDAYLFSLVDEDNKSIQPGNFERHWGLFYYDGRPKYQLTIGSRTNGLVGATGVAHLPKKWCILKPSANLNSDQVAPSVSYACQNADCTSLGYGTSCGGLDIRGNISYAFNSYYQVNDQVDGACKFPGLSTVTDRDPSTQGCTFQIMIQTDSARRIESLRIVLFAFLVVAFL*