AlfalfaGEDB | Msa1388890

M. sativa cultivar zhongmu-4 / Msa1388890

KEGG: K19893
GO: GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
PFAM: PF00332.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388890	XP_013465761.1	98.742	477	5	1	1	477	1	476	0.0	963

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388890	sp\|Q9M088\|E135_ARATH	66.949	472	154	2	6	477	7	476	0.0	672

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388890	A0A072VDD5	98.742	477	5	1	1	477	1	476	0.0	963

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021290	Msa1388890	0.813080	3.067089e-51	-8.615850e-47
Msa0037290	Msa1388890	0.808085	3.683610e-50	-8.615850e-47
Msa0055880	Msa1388890	0.956503	2.527628e-114	-8.615850e-47
Msa0056000	Msa1388890	0.960301	2.107965e-118	-8.615850e-47
Msa0089540	Msa1388890	0.806899	6.574719e-50	-8.615850e-47
Msa0153510	Msa1388890	0.959075	4.810957e-117	-8.615850e-47
Msa0356640	Msa1388890	0.840510	8.325252e-58	-8.615850e-47
Msa0371490	Msa1388890	0.812049	5.155502e-51	-8.615850e-47
Msa0432260	Msa1388890	-0.807065	6.063285e-50	-8.615850e-47
Msa0469430	Msa1388890	0.809323	2.002524e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388890	MtrunA17_Chr1g0148391	98.742	477	5	1	1	477	1	476	0.0	963
Msa1388890	MtrunA17_Chr3g0138741	75.630	476	115	1	2	476	6	481	0.0	756
Msa1388890	MtrunA17_Chr6g0461601	55.602	482	205	5	3	477	2	481	0.0	525
Msa1388890	MtrunA17_Chr4g0069801	57.018	456	192	4	1	453	1	455	0.0	523
Msa1388890	MtrunA17_Chr2g0306311	50.000	504	213	7	9	474	9	511	5.17e-177	506
Msa1388890	MtrunA17_Chr4g0062771	51.042	480	227	4	4	476	8	486	2.21e-176	504
Msa1388890	MtrunA17_Chr7g0253091	53.878	477	211	5	4	476	3	474	2.23e-173	496
Msa1388890	MtrunA17_Chr8g0383311	51.029	486	222	6	5	477	14	496	2.72e-172	494
Msa1388890	MtrunA17_Chr4g0076581	52.331	472	218	4	10	476	14	483	1.11e-167	482
Msa1388890	MtrunA17_Chr2g0290821	53.630	427	194	2	27	451	28	452	2.14e-163	471

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388890	AT4G31140.1	66.949	472	154	2	6	477	7	476	0.0	672
Msa1388890	AT5G58090.1	67.366	429	139	1	27	454	22	450	0.0	611
Msa1388890	AT5G20870.1	56.769	458	185	5	8	455	11	465	2.90e-176	504
Msa1388890	AT3G24330.1	53.043	460	209	5	8	462	20	477	1.79e-172	494
Msa1388890	AT1G64760.1	55.530	434	186	5	24	453	22	452	2.20e-166	478
Msa1388890	AT1G64760.2	55.530	434	186	5	24	453	22	452	2.20e-166	478
Msa1388890	AT5G18220.1	51.452	482	213	8	8	476	15	488	4.66e-166	478
Msa1388890	AT2G19440.2	54.018	448	199	5	10	453	4	448	6.39e-166	477
Msa1388890	AT2G19440.1	54.018	448	199	5	10	453	4	448	6.39e-166	477
Msa1388890	AT3G04010.1	54.214	439	195	4	24	458	30	466	7.08e-166	477

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Find 131 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATAAACAGATCTCTT+TGG	0.366906	tig0021196:-117215	None:intergenic
AAATGATTTGCTTTATACTA+TGG	0.263703	tig0021196:+117653	Msa1388890:CDS
AACAGATCTCTTTGGATGGC+AGG	0.439544	tig0021196:-117207	None:intergenic
AACGGGCTAGTAGGTGCTAC+CGG	0.592787	tig0021196:+120005	Msa1388890:CDS
AAGAGATTCGATTCTCCTCG+CGG	0.664201	tig0021196:-120324	None:intergenic
AAGGGGACTCCATTGAGACC+TGG	0.654522	tig0021196:+119846	Msa1388890:CDS
AAGTATGCATCCATAGGACC+AGG	0.624541	tig0021196:-119864	None:intergenic
AAGTTGAAGAAGAGTTTGAA+AGG	0.492902	tig0021196:-117256	None:intergenic
AATAAAAGGATAAATGTTCA+CGG	0.560448	tig0021196:-119559	None:intergenic
AATCAGTTTGGATCATGATT+TGG	0.323082	tig0021196:-120301	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAGAGACAGAAAAGGTAAT+TGG	-	tig0021196:117121-117140	None:intergenic	30.0%
AGTTGAAGAAGAGTTTGAAA+GGG	-	tig0021196:117258-117277	None:intergenic	30.0%
AAGTTGAAGAAGAGTTTGAA+AGG	-	tig0021196:117259-117278	None:intergenic	30.0%
TGATGGAGGGTAAAAAATTT+AGG	+	tig0021196:117409-117428	Msa1388890:exon	30.0%
TTTGAAGAAATCTGGTATTC+AGG	+	tig0021196:117614-117633	Msa1388890:CDS	30.0%
GGTTATGATTGTTTCAAACT+AGG	+	tig0021196:117857-117876	Msa1388890:intron	30.0%
AGTGAAGACATATTTAACCA+AGG	+	tig0021196:118033-118052	Msa1388890:intron	30.0%
GTGAAGACATATTTAACCAA+GGG	+	tig0021196:118034-118053	Msa1388890:intron	30.0%
GACAAGTAATTTCCATACAT+CGG	-	tig0021196:118571-118590	None:intergenic	30.0%
AGTTATAATGTCTGCCAAAA+AGG	+	tig0021196:118699-118718	Msa1388890:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021196	gene	117106	120581	117106	ID=Msa1388890;Name=Msa1388890
tig0021196	mRNA	117106	120581	117106	ID=Msa1388890-mRNA-1;Parent=Msa1388890;Name=Msa1388890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=305\|1\|1\|1\|1\|1\|2\|193\|477
tig0021196	exon	117106	117754	117106	ID=Msa1388890-mRNA-1:exon:11321;Parent=Msa1388890-mRNA-1
tig0021196	exon	119299	120581	119299	ID=Msa1388890-mRNA-1:exon:11322;Parent=Msa1388890-mRNA-1
tig0021196	five_prime_UTR	117106	117410	117106	ID=Msa1388890-mRNA-1:five_prime_utr;Parent=Msa1388890-mRNA-1
tig0021196	CDS	117411	117754	117411	ID=Msa1388890-mRNA-1:cds;Parent=Msa1388890-mRNA-1
tig0021196	CDS	119299	120388	119299	ID=Msa1388890-mRNA-1:cds;Parent=Msa1388890-mRNA-1
tig0021196	three_prime_UTR	120389	120581	120389	ID=Msa1388890-mRNA-1:three_prime_utr;Parent=Msa1388890-mRNA-1

Gene Sequence

>Msa1388890

ATGGAGGGTAAAAAATTTAGGATATGTTTAGTTCTTATGATGTTATTTGCCACATCATCAGTGTTGGAAGTGGGTGGAATTGGAGTGAACTGGGGAACACAGTCAACACATCCATTACCACCATCTACTGTGGTGAAAATGTTAAAAGATAATGGTATTCAAAAAGTTAAGCTTTTTGATGCTGATCCAAATATTCTTGATGCTTTGAAGAAATCTGGTATTCAGGTTATGGTTGGTATACCAAATGATTTGCTTTATACTATGGCTAATAGTCGTCAAGCTGCTGAAAAATGGGTTGCTAAGAATGTTTCAGCTCATGTTTCATCTGGTGGAGTAGATATCAGGTATATTGCGGTTGGAAATGAACCTTTCTTGTCAACTTACAACGGTACCTTTGAAGCCACAACACTTCCAGCTCTTGTAAATATCCAAAACGCTCTTATAAAAGCTGGTTTGGGAAGTTCAATCAAAGTCACTGTCCCTTCAAATGCTGATGTGTATCAGAGCTCATCAGGTAACCCTTCCGATGGCGACTTTAGGACAGACATCCATGATCTCATGGTTCAGATTGTCAAGTTTTTGAGTCAGAACAATGCTCCATTTACCGTGAACATTTATCCTTTTATTAGTCTTTATGAAGATCCCAATTTTCCAGTCGACTATGCATTTTTCAACGGTTTTAGTGATCCTTTAAACGACAACGGAAAGATCTACGACAATGTCTTTGATGCTAACTATGATACTCTAGTATGGGCGTTGAATAAGAATGGCTTTGGTAACATGCCCATAATTGTTGGAGAGATCGGTTGGCCTACAGACGGAGACAGAAACGGAAATCTTCAACTCGCGCAACGTTTTAACCAAGGTTTCATGACTCGATTTATTGCCGGAAAGGGGACTCCATTGAGACCTGGTCCTATGGATGCATACTTGTTTAGTTTAGTAGATGAAGACAACAAAAGCATTCAACCAGGTAACTTTGAACGTCATTGGGGATTGTTTTATTACGATGGACGGCCGAAATACCAACTCACCATTGGATCAAGAACCAACGGGCTAGTAGGTGCTACCGGAGTAGCACATTTGCCCAAGAAGTGGTGTATTTTGAAACCCTCAGCGAACCTGAACAGTGATCAAGTTGCACCGAGTGTGTCTTATGCTTGCCAAAATGCAGACTGCACTAGTCTTGGCTATGGAACTTCGTGTGGCGGTTTAGATATCCGTGGTAACATCTCATATGCGTTTAATAGCTACTATCAGGTGAATGATCAGGTTGATGGCGCTTGCAAATTTCCCGGTCTTTCTACTGTCACTGACAGAGATCCTTCAACTCAGGGTTGCACATTCCAAATCATGATCCAAACTGATTCCGCGAGGAGAATCGAATCTCTTAGAATAGTACTGTTTGCTTTTTTGGTTGTTGCTTTTTTGTAA

Protein sequence

>Msa1388890

MEGKKFRICLVLMMLFATSSVLEVGGIGVNWGTQSTHPLPPSTVVKMLKDNGIQKVKLFDADPNILDALKKSGIQVMVGIPNDLLYTMANSRQAAEKWVAKNVSAHVSSGGVDIRYIAVGNEPFLSTYNGTFEATTLPALVNIQNALIKAGLGSSIKVTVPSNADVYQSSSGNPSDGDFRTDIHDLMVQIVKFLSQNNAPFTVNIYPFISLYEDPNFPVDYAFFNGFSDPLNDNGKIYDNVFDANYDTLVWALNKNGFGNMPIIVGEIGWPTDGDRNGNLQLAQRFNQGFMTRFIAGKGTPLRPGPMDAYLFSLVDEDNKSIQPGNFERHWGLFYYDGRPKYQLTIGSRTNGLVGATGVAHLPKKWCILKPSANLNSDQVAPSVSYACQNADCTSLGYGTSCGGLDIRGNISYAFNSYYQVNDQVDGACKFPGLSTVTDRDPSTQGCTFQIMIQTDSARRIESLRIVLFAFLVVAFL*