AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0038180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038180 MtrunA17_Chr6g0467121 56.286 350 144 4 8 354 41 384 1.46e-142 409
Msa0038180 MtrunA17_Chr6g0467161 52.819 337 153 5 1 336 5 336 1.37e-124 362
Msa0038180 MtrunA17_Chr6g0467251 48.830 342 164 5 1 340 1 333 3.88e-111 328
Msa0038180 MtrunA17_Chr6g0477071 40.419 334 176 6 13 332 14 338 1.38e-87 267
Msa0038180 MtrunA17_Chr5g0404721 46.780 295 148 5 45 332 34 326 1.45e-87 267
Msa0038180 MtrunA17_Chr2g0292151 45.031 322 164 7 41 352 29 347 4.13e-87 266
Msa0038180 MtrunA17_Chr3g0128061 47.213 305 148 6 41 336 26 326 6.45e-86 263
Msa0038180 MtrunA17_Chr2g0292271 41.983 343 178 7 19 352 16 346 3.28e-85 261
Msa0038180 MtrunA17_Chr2g0292211 44.127 315 164 6 34 339 33 344 4.08e-85 262
Msa0038180 MtrunA17_Chr8g0372601 44.816 299 156 5 45 336 34 330 1.69e-84 259
Msa0038180 MtrunA17_Chr1g0188431 42.123 292 162 4 41 332 39 323 2.41e-84 258
Msa0038180 MtrunA17_Chr2g0292091 43.438 320 169 6 41 351 24 340 2.67e-83 256
Msa0038180 MtrunA17_Chr8g0371381 45.215 303 150 6 41 336 26 319 4.34e-83 255
Msa0038180 MtrunA17_Chr1g0194151 45.928 307 152 7 41 336 30 333 5.81e-83 255
Msa0038180 MtrunA17_Chr2g0291751 42.690 342 171 8 12 339 3 333 5.94e-83 256
Msa0038180 MtrunA17_Chr4g0038151 43.667 300 162 4 41 336 25 321 8.28e-83 254
Msa0038180 MtrunA17_Chr4g0038161 41.176 340 176 6 1 336 1 320 1.49e-82 254
Msa0038180 MtrunA17_Chr7g0258811 42.249 329 170 7 13 332 50 367 3.46e-82 254
Msa0038180 MtrunA17_Chr2g0292251 42.415 323 174 6 41 354 28 347 4.12e-82 254
Msa0038180 MtrunA17_Chr2g0292241 43.831 308 161 6 41 339 29 333 1.32e-81 253
Msa0038180 MtrunA17_Chr2g0292111 43.175 315 167 6 45 350 33 344 1.49e-81 252
Msa0038180 MtrunA17_Chr2g0322861 45.246 305 153 7 41 336 87 386 1.99e-81 253
Msa0038180 MtrunA17_Chr2g0299691 41.691 343 174 9 5 336 31 358 2.40e-81 252
Msa0038180 MtrunA17_Chr2g0292101 43.887 319 169 5 41 351 25 341 2.85e-81 251
Msa0038180 MtrunA17_Chr4g0070951 42.105 342 172 8 5 336 4 329 4.02e-81 250
Msa0038180 MtrunA17_Chr5g0405991 43.189 301 155 7 39 332 21 312 7.87e-81 249
Msa0038180 MtrunA17_Chr4g0013171 39.938 323 186 6 17 336 4 321 1.15e-80 249
Msa0038180 MtrunA17_Chr1g0194271 44.904 314 152 7 41 336 30 340 3.34e-80 248
Msa0038180 MtrunA17_Chr4g0053871 42.761 297 166 3 41 334 27 322 4.44e-80 248
Msa0038180 MtrunA17_Chr2g0320101 42.321 293 164 4 45 336 29 317 7.14e-80 247
Msa0038180 MtrunA17_Chr1g0155611 44.186 301 158 5 40 332 45 343 8.64e-80 248
Msa0038180 MtrunA17_Chr7g0225221 43.289 298 165 4 41 336 25 320 8.83e-80 246
Msa0038180 MtrunA17_Chr2g0292181 42.208 308 166 6 41 339 38 342 1.17e-79 248
Msa0038180 MtrunA17_Chr7g0254201 43.137 306 165 4 35 337 14 313 1.29e-79 246
Msa0038180 MtrunA17_Chr1g0204011 41.231 325 168 7 19 336 14 322 1.11e-78 244
Msa0038180 MtrunA17_Chr2g0320071 41.638 293 166 4 45 336 29 317 1.13e-78 244
Msa0038180 MtrunA17_Chr1g0164891 44.040 302 157 7 45 336 93 392 1.39e-78 246
Msa0038180 MtrunA17_Chr4g0038171 42.193 301 166 5 41 336 24 321 2.41e-78 243
Msa0038180 MtrunA17_Chr1g0175561 41.722 302 163 7 41 332 24 322 2.95e-78 243
Msa0038180 MtrunA17_Chr4g0043391 42.193 301 166 5 41 336 27 324 3.43e-78 243
Msa0038180 MtrunA17_Chr5g0402571 42.071 309 169 5 35 336 21 326 4.62e-78 242
Msa0038180 MtrunA17_Chr3g0106921 41.250 320 173 4 16 332 9 316 6.32e-78 242
Msa0038180 MtrunA17_Chr7g0244461 42.282 298 165 5 41 336 20 312 8.59e-78 241
Msa0038180 MtrunA17_Chr4g0024121 42.809 299 161 5 45 336 31 326 9.43e-78 241
Msa0038180 MtrunA17_Chr5g0402581 42.903 310 165 5 35 336 21 326 9.74e-78 241
Msa0038180 MtrunA17_Chr2g0279041 43.506 308 157 6 39 336 25 325 1.46e-77 241
Msa0038180 MtrunA17_Chr7g0254231 41.216 296 168 3 41 336 22 311 1.56e-77 241
Msa0038180 MtrunA17_Chr7g0268501 41.818 330 172 7 13 336 5 320 1.88e-77 241
Msa0038180 MtrunA17_Chr7g0268521 41.818 330 172 7 13 336 5 320 1.88e-77 241
Msa0038180 MtrunA17_Chr5g0432441 42.193 301 165 4 41 336 30 326 4.82e-77 240
Msa0038180 MtrunA17_Chr5g0400331 42.671 307 156 7 45 336 30 331 4.86e-77 240
Msa0038180 MtrunA17_Chr2g0292261 42.368 321 172 7 41 352 29 345 1.16e-76 239
Msa0038180 MtrunA17_Chr3g0114451 39.692 325 183 6 9 332 2 314 1.27e-76 238
Msa0038180 MtrunA17_Chr7g0244451 42.320 319 168 6 16 332 8 312 1.48e-76 238
Msa0038180 MtrunA17_Chr3g0129051 41.356 295 166 4 41 332 28 318 2.40e-76 238
Msa0038180 MtrunA17_Chr1g0157051 40.984 305 165 7 37 334 20 316 3.74e-76 237
Msa0038180 MtrunA17_Chr5g0432351 41.883 308 170 6 36 338 20 323 4.64e-76 237
Msa0038180 MtrunA17_Chr5g0401431 40.909 308 171 5 36 334 22 327 4.79e-76 237
Msa0038180 MtrunA17_Chr2g0320061 41.837 294 165 5 45 336 29 318 5.11e-76 237
Msa0038180 MtrunA17_Chr4g0013201 43.607 305 165 5 34 336 39 338 7.36e-76 237
Msa0038180 MtrunA17_Chr2g0320051 41.837 294 165 5 45 336 29 318 1.27e-75 236
Msa0038180 MtrunA17_Chr5g0438021 41.017 295 167 4 41 332 31 321 2.68e-74 233
Msa0038180 MtrunA17_Chr4g0072091 41.118 304 167 6 41 336 24 323 3.37e-74 232
Msa0038180 MtrunA17_Chr4g0013181 40.136 294 171 4 45 336 63 353 4.29e-74 233
Msa0038180 MtrunA17_Chr4g0013721 43.289 298 158 5 45 336 104 396 1.26e-73 234
Msa0038180 MtrunA17_Chr6g0460711 39.344 305 177 3 35 336 15 314 1.31e-73 231
Msa0038180 MtrunA17_Chr2g0320091 40.136 294 170 4 45 336 29 318 2.05e-73 230
Msa0038180 MtrunA17_Chr2g0320031 38.298 329 185 7 10 336 7 319 3.47e-73 229
Msa0038180 MtrunA17_Chr2g0292291 40.694 317 175 6 45 352 34 346 5.34e-73 230
Msa0038180 MtrunA17_Chr4g0063671 43.279 305 153 8 41 333 21 317 1.74e-72 228
Msa0038180 MtrunA17_Chr4g0068621 38.323 334 197 6 9 336 6 336 7.16e-72 227
Msa0038180 MtrunA17_Chr4g0075241 40.065 307 173 6 38 336 24 327 1.26e-71 226
Msa0038180 MtrunA17_Chr4g0013821 40.940 298 165 5 45 336 32 324 3.84e-71 225
Msa0038180 MtrunA17_Chr2g0296621 40.397 302 164 7 41 336 50 341 4.05e-71 225
Msa0038180 MtrunA17_Chr3g0129061 40.678 295 168 4 41 332 28 318 4.86e-71 224
Msa0038180 MtrunA17_Chr5g0432341 40.391 307 174 6 36 337 20 322 5.95e-71 224
Msa0038180 MtrunA17_Chr1g0148021 39.672 305 172 6 41 336 27 328 6.26e-71 224
Msa0038180 MtrunA17_Chr4g0046131 39.104 335 192 6 11 334 11 344 6.95e-71 224
Msa0038180 MtrunA17_Chr7g0224371 40.614 293 168 4 45 336 35 322 8.61e-70 221
Msa0038180 MtrunA17_Chr5g0432331 39.610 308 175 7 36 337 51 353 1.82e-69 221
Msa0038180 MtrunA17_Chr1g0197411 38.361 305 179 4 41 337 28 331 2.34e-69 220
Msa0038180 MtrunA17_Chr4g0013191 43.299 291 156 6 50 336 55 340 6.92e-68 217
Msa0038180 MtrunA17_Chr5g0421411 39.711 277 152 7 72 336 12 285 1.36e-67 214
Msa0038180 MtrunA17_Chr3g0106901 41.156 294 166 5 41 332 31 319 6.45e-66 211
Msa0038180 MtrunA17_Chr1g0181511 36.184 304 183 4 41 338 27 325 7.06e-66 211
Msa0038180 MtrunA17_Chr3g0129041 39.661 295 171 4 41 332 28 318 8.29e-66 211
Msa0038180 MtrunA17_Chr8g0364291 37.097 310 184 5 36 336 17 324 1.68e-65 210
Msa0038180 MtrunA17_Chr4g0076211 38.926 298 167 6 46 337 46 334 1.83e-65 210
Msa0038180 MtrunA17_Chr3g0107881 38.138 333 183 11 10 336 9 324 1.72e-64 207
Msa0038180 MtrunA17_Chr1g0213061 39.867 301 170 7 41 336 27 321 6.25e-64 206
Msa0038180 MtrunA17_Chr1g0181431 34.426 305 193 3 38 338 24 325 3.62e-63 204
Msa0038180 MtrunA17_Chr4g0074851 34.983 303 190 3 40 338 31 330 5.82e-63 204
Msa0038180 MtrunA17_Chr1g0181481 34.437 302 191 3 41 338 27 325 3.38e-61 199
Msa0038180 MtrunA17_Chr2g0329641 36.628 344 195 8 7 337 3 336 5.57e-61 199
Msa0038180 MtrunA17_Chr6g0451571 36.913 298 181 4 41 332 34 330 2.80e-59 194
Msa0038180 MtrunA17_Chr2g0279061 42.366 262 134 6 85 336 12 266 6.81e-58 189
Msa0038180 MtrunA17_Chr2g0316481 34.743 331 175 7 41 333 76 403 1.98e-57 192
Msa0038180 MtrunA17_Chr3g0136751 36.688 308 181 5 37 336 21 322 2.14e-57 189
Msa0038180 MtrunA17_Chr2g0316791 34.441 331 176 7 41 333 76 403 2.48e-57 191
Msa0038180 MtrunA17_Chr2g0278671 35.621 306 181 7 41 336 24 323 1.38e-56 187
Msa0038180 MtrunA17_Chr2g0316831 34.139 331 177 7 41 333 112 439 2.10e-55 187
Msa0038180 MtrunA17_Chr2g0311251 34.139 331 176 9 41 333 11 337 7.73e-55 183
Msa0038180 MtrunA17_Chr2g0316191 33.735 332 178 7 41 333 76 404 1.70e-54 184
Msa0038180 MtrunA17_Chr2g0311241 30.914 372 174 8 41 333 60 427 4.15e-52 178
Msa0038180 MtrunA17_Chr5g0413051 34.641 306 189 5 41 336 73 377 4.29e-51 174
Msa0038180 MtrunA17_Chr2g0292281 42.982 228 111 6 132 352 15 230 2.91e-49 165
Msa0038180 MtrunA17_Chr5g0432401 34.899 298 144 8 41 332 29 282 3.33e-49 167
Msa0038180 MtrunA17_Chr4g0004591 29.688 320 155 6 41 333 77 353 2.32e-39 142
Msa0038180 MtrunA17_Chr3g0114461 36.559 186 113 4 153 336 10 192 1.37e-35 128
Msa0038180 MtrunA17_Chr2g0316811 34.025 241 134 5 41 259 50 287 1.86e-35 132
Msa0038180 MtrunA17_Chr2g0316141 29.720 286 141 8 87 333 11 275 1.41e-29 115
Msa0038180 MtrunA17_Chr2g0316181 29.720 286 141 8 87 333 11 275 1.41e-29 115
Msa0038180 MtrunA17_Chr3g0114491 41.935 124 66 2 26 149 8 125 2.28e-26 102
Msa0038180 MtrunA17_Chr1g0181501 32.984 191 120 4 153 338 4 191 3.10e-26 103
Msa0038180 MtrunA17_Chr5g0432321 37.815 119 72 1 163 281 16 132 5.19e-21 87.8
Msa0038180 MtrunA17_Chr3g0104101 33.099 142 82 5 207 336 9 149 1.00e-18 82.0
Msa0038180 MtrunA17_Chr1g0181491 36.190 105 64 2 45 149 16 117 3.27e-18 80.5
Msa0038180 MtrunA17_Chr6g0468731 54.167 72 28 2 80 151 22 88 3.62e-18 78.6
Msa0038180 MtrunA17_Chr5g0423911 53.030 66 31 0 267 332 2 67 8.65e-17 75.5
Msa0038180 MtrunA17_Chr7g0268491 52.703 74 34 1 263 336 25 97 1.01e-16 74.7
Msa0038180 MtrunA17_Chr1g0196191 49.254 67 32 1 83 149 27 91 5.10e-15 72.0
Msa0038180 MtrunA17_Chr7g0254181 39.252 107 59 3 103 209 22 122 3.33e-14 69.7
Msa0038180 MtrunA17_Chr4g0013811 45.946 74 39 1 152 225 5 77 2.48e-13 64.7
Msa0038180 MtrunA17_Chr7g0254171 50.877 57 28 0 281 337 80 136 4.45e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038180 AT1G71695.1 59.829 351 134 3 11 357 10 357 8.53e-161 454
Msa0038180 AT2G18150.1 44.746 295 154 5 45 332 40 332 1.61e-87 267
Msa0038180 AT4G36430.1 43.729 295 157 5 45 332 34 326 7.95e-86 263
Msa0038180 AT2G18140.1 44.407 295 155 5 45 332 39 331 2.21e-85 262
Msa0038180 AT5G14130.1 42.724 323 169 4 19 336 19 330 3.17e-84 259
Msa0038180 AT5G14130.2 42.724 323 169 4 19 336 60 371 9.91e-84 259
Msa0038180 AT5G06730.1 41.026 351 185 8 1 341 1 339 1.96e-83 258
Msa0038180 AT5G66390.1 44.407 295 155 5 45 332 37 329 2.79e-83 256
Msa0038180 AT1G05260.1 44.839 310 157 8 36 336 21 325 8.75e-83 255
Msa0038180 AT3G21770.1 44.514 319 154 8 25 334 22 326 5.08e-82 253
Msa0038180 AT4G08780.1 43.168 322 169 7 41 352 24 341 8.37e-82 253
Msa0038180 AT4G33420.1 42.006 319 166 5 14 332 22 321 8.60e-82 252
Msa0038180 AT4G33420.2 42.006 319 166 5 14 332 69 368 3.06e-81 252
Msa0038180 AT1G49570.1 43.279 305 162 4 37 332 44 346 4.83e-81 251
Msa0038180 AT4G16270.1 45.574 305 151 8 41 336 50 348 1.33e-80 250
Msa0038180 AT3G32980.1 41.935 341 167 9 24 352 23 344 2.74e-80 249
Msa0038180 AT5G51890.1 43.385 325 167 8 20 336 7 322 2.02e-79 246
Msa0038180 AT4G08770.1 41.124 338 178 8 25 352 15 341 3.16e-79 246
Msa0038180 AT3G50990.1 42.715 302 164 5 38 332 38 337 3.24e-79 246
Msa0038180 AT3G49120.1 41.718 326 169 7 24 339 24 338 3.73e-79 246
Msa0038180 AT4G11290.1 41.840 337 170 8 9 336 7 326 4.00e-79 245
Msa0038180 AT1G44970.1 39.943 348 195 6 1 336 1 346 8.35e-79 245
Msa0038180 AT5G06720.1 41.000 300 167 5 41 332 32 329 1.45e-78 244
Msa0038180 AT5G42180.1 41.196 301 164 5 38 332 20 313 6.08e-78 242
Msa0038180 AT2G22420.1 42.475 299 161 5 45 337 27 320 5.93e-77 240
Msa0038180 AT2G18980.1 40.909 308 169 6 37 336 21 323 6.27e-77 240
Msa0038180 AT1G68850.1 39.181 342 182 10 10 336 5 335 7.65e-77 240
Msa0038180 AT1G14550.1 40.244 328 180 6 11 336 8 321 1.19e-76 239
Msa0038180 AT5G19890.1 41.830 306 160 7 41 336 30 327 1.21e-76 239
Msa0038180 AT5G15180.1 41.558 308 170 5 35 336 26 329 1.39e-76 239
Msa0038180 AT5G05340.1 40.803 299 170 4 41 336 30 324 1.62e-76 239
Msa0038180 AT2G35380.1 42.947 319 152 9 36 336 29 335 3.74e-76 238
Msa0038180 AT3G03670.1 40.323 310 172 5 35 336 17 321 4.41e-76 238
Msa0038180 AT5G58400.1 38.298 329 183 5 7 332 10 321 4.66e-76 238
Msa0038180 AT5G17820.1 42.424 297 155 5 41 332 24 309 1.55e-75 236
Msa0038180 AT5G64120.1 39.458 332 185 8 12 336 6 328 1.59e-75 236
Msa0038180 AT4G30170.1 39.803 304 170 5 41 336 27 325 1.60e-75 236
Msa0038180 AT2G38390.1 43.789 322 153 9 28 336 27 333 2.17e-75 237
Msa0038180 AT1G05240.1 42.434 304 163 6 41 336 26 325 2.41e-75 236
Msa0038180 AT1G05250.1 42.434 304 163 6 41 336 26 325 2.41e-75 236
Msa0038180 AT3G01190.1 42.763 304 162 5 39 336 24 321 4.69e-75 235
Msa0038180 AT3G49110.1 41.424 309 169 6 41 339 33 339 4.90e-75 236
Msa0038180 AT4G26010.1 39.934 303 172 5 35 336 16 309 5.23e-75 234
Msa0038180 AT4G26010.2 39.934 303 172 5 35 336 44 337 6.71e-75 235
Msa0038180 AT5G17820.2 42.662 293 152 5 45 332 81 362 2.97e-74 234
Msa0038180 AT4G37530.1 39.803 304 174 4 41 336 27 329 3.06e-73 230
Msa0038180 AT2G38380.1 42.857 322 156 9 28 336 27 333 4.85e-73 231
Msa0038180 AT5G58390.1 41.216 296 166 5 41 332 21 312 5.86e-71 224
Msa0038180 AT1G14540.1 41.611 298 169 5 41 336 21 315 6.76e-71 224
Msa0038180 AT2G34060.1 37.685 337 199 5 8 334 9 344 7.99e-71 225
Msa0038180 AT5G39580.1 41.118 304 166 6 39 336 23 319 8.04e-71 224
Msa0038180 AT5G40150.1 39.933 298 176 2 41 336 32 328 8.10e-71 224
Msa0038180 AT4G37520.1 38.816 304 177 4 41 336 27 329 1.23e-70 224
Msa0038180 AT4G17690.1 39.216 306 180 3 34 337 22 323 1.68e-70 223
Msa0038180 AT1G34510.1 38.944 303 175 5 35 336 16 309 1.73e-70 223
Msa0038180 AT5G67400.1 39.672 305 173 6 41 336 27 329 1.39e-69 221
Msa0038180 AT4G37520.2 38.158 304 176 5 41 336 27 326 7.52e-68 216
Msa0038180 AT3G49960.1 38.361 305 177 6 41 336 27 329 1.29e-67 216
Msa0038180 AT3G28200.1 39.667 300 173 5 41 336 21 316 6.89e-67 214
Msa0038180 AT5G19880.1 39.274 303 171 6 41 332 25 325 1.42e-66 213
Msa0038180 AT2G41480.1 40.132 304 162 8 45 336 33 328 1.88e-66 213
Msa0038180 AT2G24800.1 40.909 308 167 6 38 336 28 329 2.20e-66 213
Msa0038180 AT4G33870.1 35.329 334 172 5 41 333 68 398 4.89e-66 214
Msa0038180 AT4G21960.1 35.556 315 193 4 28 338 21 329 9.78e-66 211
Msa0038180 AT5G64110.1 40.728 302 160 7 45 336 38 330 1.24e-65 211
Msa0038180 AT5G24070.1 37.719 342 190 8 10 338 6 337 1.20e-64 209
Msa0038180 AT2G39040.1 40.777 309 166 8 41 336 46 350 6.61e-63 204
Msa0038180 AT4G31760.1 36.667 330 186 6 15 336 12 326 1.77e-62 202
Msa0038180 AT1G77100.1 36.937 333 184 9 10 336 7 319 1.92e-61 200
Msa0038180 AT5G47000.1 36.513 304 185 4 36 332 24 326 2.12e-61 200
Msa0038180 AT5G22410.1 39.934 303 162 9 41 332 28 321 3.10e-61 199
Msa0038180 AT3G17070.1 35.430 302 185 4 39 332 36 335 2.95e-60 197
Msa0038180 AT5G64100.1 39.333 300 165 7 45 336 41 331 3.03e-60 197
Msa0038180 AT4G37530.2 40.078 257 145 4 41 289 27 282 4.32e-60 195
Msa0038180 AT2G43480.1 35.588 340 190 9 13 332 1 331 6.85e-59 194
Msa0038180 AT1G24110.1 35.238 315 189 6 32 336 13 322 2.66e-58 192
Msa0038180 AT2G37130.1 34.437 302 188 5 41 336 30 327 5.04e-58 191
Msa0038180 AT1G30870.1 36.825 315 180 8 36 342 46 349 5.17e-58 192
Msa0038180 AT2G37130.2 34.564 298 185 5 45 336 3 296 7.91e-58 190
Msa0038180 AT4G25980.1 36.482 307 178 6 41 336 26 326 9.51e-58 190
Msa0038180 AT2G35380.2 42.292 253 120 8 102 336 3 247 9.34e-56 183
Msa0038180 AT3G17070.2 32.946 258 162 5 83 332 18 272 3.81e-41 145
Msa0038180 AT5G39580.2 38.806 201 112 4 39 239 23 212 1.70e-38 137
Msa0038180 AT4G25980.2 40.588 170 95 3 41 210 71 234 4.02e-35 130
Msa0038180 AT2G24800.2 42.690 171 92 3 38 208 28 192 8.89e-33 122
Msa0038180 AT3G42570.1 29.907 107 73 1 102 208 43 147 6.38e-11 60.5

Find 79 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTACTGCTATGCTTAAAA+TGG 0.152204 1_1:-67469394 Msa0038180:CDS
TACTTGTAAGAATGTTAATT+TGG 0.190227 1_1:-67469125 Msa0038180:three_prime_UTR
AAGTAGGACAAGTTTGTTTA+AGG 0.199321 1_1:+67469601 None:intergenic
TCCATGACAGGGTCTTGTTT+TGG 0.248897 1_1:+67469642 None:intergenic
CTTCCATGACTGCTTTGTTC+AGG 0.336694 1_1:-67470405 Msa0038180:intron
TAAGGAACATTATTAGATTC+AGG 0.338942 1_1:+67469197 None:intergenic
ATTGTTGTTGTGTTGCTTGA+TGG 0.350284 1_1:+67469774 None:intergenic
TTGTGATGGATCAGTATTAT+TGG 0.364319 1_1:-67470156 Msa0038180:CDS
CTTCACTATAGGAGGAGGTT+TGG 0.382309 1_1:+67470547 None:intergenic
CACCACCAAACTTGAGTCTT+AGG 0.384280 1_1:-67470100 Msa0038180:CDS
CAATGGCTTATGCTTCTTGT+AGG 0.384357 1_1:-67470643 Msa0038180:CDS
CCATAGGTTTGGTCCATGAC+AGG 0.394327 1_1:+67469630 None:intergenic
CTACTACATCTGTAGGGTTA+AGG 0.401776 1_1:+67469727 None:intergenic
CTGATGATAGATTCAAGCTT+AGG 0.402937 1_1:+67470491 None:intergenic
GTAAAACTAACCTCTTGAAA+AGG 0.408934 1_1:+67469219 None:intergenic
ATTAGCACGAATTTCTCCTT+TGG 0.416931 1_1:+67469347 None:intergenic
TTCGTGCTAATTGCTCTGTT+AGG 0.418468 1_1:-67469335 Msa0038180:CDS
TCTTATCAGTGTACAAATCT+TGG 0.422683 1_1:+67469475 None:intergenic
GGTGGTGCATCTTTCTCACT+TGG 0.424168 1_1:+67470116 None:intergenic
CATGATAGTCCCTTCACTAT+AGG 0.430598 1_1:+67470536 None:intergenic
TTCGATTATCTTGAAGGCCT+CGG 0.436787 1_1:+67470076 None:intergenic
GTTACTGCTATGCTTAAAAT+GGG 0.447317 1_1:-67469393 Msa0038180:CDS
AAAGGTATGGATTAGAAGAA+AGG 0.455618 1_1:+67470607 None:intergenic
CTCTCAGGTGGTCACACAAT+AGG 0.463629 1_1:-67469702 Msa0038180:CDS
CGTTGATCTTATGAACCGTC+AGG 0.468509 1_1:-67469514 Msa0038180:CDS
AAGATTTGTACACTGATAAG+AGG 0.468841 1_1:-67469473 Msa0038180:CDS
TTAGAAATGTGATAACTACT+AGG 0.473160 1_1:-67469255 Msa0038180:exon
TATTTATTATCAAATCTGTT+GGG 0.477731 1_1:+67469540 None:intergenic
GATGATGTTGGTCAAGCTGC+TGG 0.480697 1_1:-67470443 Msa0038180:CDS
TAAAACTAACCTCTTGAAAA+GGG 0.486235 1_1:+67469220 None:intergenic
GTATTTATTATCAAATCTGT+TGG 0.486993 1_1:+67469539 None:intergenic
TAATCCATCTCTCCTTCCTA+AGG 0.488025 1_1:+67469839 None:intergenic
AACTGTGGTGTTATCAGTGT+TGG 0.488314 1_1:+67469578 None:intergenic
TCGGTCCTAAGACTCAAGTT+TGG 0.499279 1_1:+67470095 None:intergenic
CCTTACGTGTACTACTGTAA+TGG 0.501608 1_1:-67469179 Msa0038180:three_prime_UTR
ATGAAAATGCAGGGTTGTGA+TGG 0.506653 1_1:-67470170 Msa0038180:intron
CATCTTTCACCACAGAAGTA+AGG 0.507687 1_1:+67469292 None:intergenic
CAAATCTTTCCTTACTTCTG+TGG 0.510152 1_1:-67469301 Msa0038180:CDS
GATGTGAGAAAATGAAAGAA+AGG 0.511303 1_1:+67470589 None:intergenic
CCATTACAGTAGTACACGTA+AGG 0.515387 1_1:+67469179 None:intergenic
ACAGATGTAGTAGCACTCTC+AGG 0.517970 1_1:-67469717 Msa0038180:CDS
GAGAAAATGAAAGAAAGGTA+TGG 0.521173 1_1:+67470594 None:intergenic
AACAGCATCACGAGCGGCAA+TGG 0.523212 1_1:+67469992 None:intergenic
TGGATTAACATTTGCAACAC+AGG 0.523958 1_1:-67469823 Msa0038180:CDS
CCAGACTACAAAATTCCCTT+AGG 0.524500 1_1:-67469855 Msa0038180:CDS
CATAGGTTTGGTCCATGACA+GGG 0.525102 1_1:+67469631 None:intergenic
CTATAGTGAAGGGACTATCA+TGG 0.530164 1_1:-67470535 Msa0038180:CDS
GTCCTAAGACTCAAGTTTGG+TGG 0.530334 1_1:+67470098 None:intergenic
CCTGTCATGGACCAAACCTA+TGG 0.538046 1_1:-67469630 Msa0038180:CDS
AAGATCTTCAATGATGATGT+TGG 0.544356 1_1:-67470455 Msa0038180:CDS
CAAAGCAGTCATGGAAGTGA+AGG 0.552183 1_1:+67470411 None:intergenic
GAGAGTGCTACTACATCTGT+AGG 0.561499 1_1:+67469720 None:intergenic
AGTCCCTTCACTATAGGAGG+AGG 0.565917 1_1:+67470542 None:intergenic
TTACCTGAACAAAGCAGTCA+TGG 0.566092 1_1:+67470402 None:intergenic
GTGTTATCAGTGTTGGAAGT+AGG 0.569777 1_1:+67469585 None:intergenic
GATAGTCCCTTCACTATAGG+AGG 0.573316 1_1:+67470539 None:intergenic
CCGTCAGGGTCTCTTTACTT+CGG 0.573471 1_1:-67469499 Msa0038180:CDS
GTACACTGATAAGAGGACTA+AGG 0.574738 1_1:-67469466 Msa0038180:CDS
ATTCCCTTAGGAAGGAGAGA+TGG 0.574750 1_1:-67469843 Msa0038180:CDS
ACTACAAAATTCCCTTAGGA+AGG 0.582731 1_1:-67469851 Msa0038180:CDS
CAAACCTCCTCCTATAGTGA+AGG 0.591712 1_1:-67470546 Msa0038180:CDS
AATCCATCTCTCCTTCCTAA+GGG 0.592767 1_1:+67469840 None:intergenic
GATGGATCAGTATTATTGGA+TGG 0.596952 1_1:-67470152 Msa0038180:CDS
GTTGTGTTGCTTGATGGTGA+AGG 0.611201 1_1:+67469780 None:intergenic
TTCTGTGGTGAAAGATGCGG+TGG 0.618611 1_1:-67469286 Msa0038180:CDS
AGAGTGCTACTACATCTGTA+GGG 0.620697 1_1:+67469721 None:intergenic
CTAATTTCTACATATCACAA+TGG 0.621170 1_1:-67470660 None:intergenic
CCCAAAACAAGACCCTGTCA+TGG 0.624304 1_1:-67469643 Msa0038180:CDS
AAACCTCCTCCTATAGTGAA+GGG 0.624659 1_1:-67470545 Msa0038180:CDS
TGTTTGTGAAAGAACTGCAG+TGG 0.657795 1_1:+67469673 None:intergenic
TACTTCTGTGGTGAAAGATG+CGG 0.659606 1_1:-67469289 Msa0038180:CDS
ACTACGAATATCTAGAACTG+TGG 0.661587 1_1:+67469563 None:intergenic
ATTAACATTTGCAACACAGG+AGG 0.668426 1_1:-67469820 Msa0038180:CDS
GATGTAGTAGCACTCTCAGG+TGG 0.686682 1_1:-67469714 Msa0038180:CDS
GTTGATCTTATGAACCGTCA+GGG 0.688433 1_1:-67469513 Msa0038180:CDS
AGTAATATAGAGAAGCAGTG+TGG 0.694261 1_1:-67470044 Msa0038180:CDS
TAGGAAAACAGCATCACGAG+CGG 0.695239 1_1:+67469986 None:intergenic
AAACTTGAGTCTTAGGACCG+AGG 0.714645 1_1:-67470093 Msa0038180:CDS
CCGAAGTAAAGAGACCCTGA+CGG 0.722315 1_1:+67469499 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATTTGGTTATTTA+TGG - chr1_1:67469543-67469562 Msa0038180:CDS 10.0%
!! TTATTATATTTGGTTATTTA+TGG - chr1_1:67469543-67469562 Msa0038180:CDS 10.0%
!! AACTATAAACAATACTAATT+AGG - chr1_1:67469407-67469426 Msa0038180:CDS 15.0%
!! AAATCCAAACTTATTATATT+TGG - chr1_1:67469533-67469552 Msa0038180:CDS 15.0%
!! ATAACCAAATATAATAAGTT+TGG + chr1_1:67469540-67469559 None:intergenic 15.0%
!! TATTTATTATCAAATCTGTT+GGG + chr1_1:67470207-67470226 None:intergenic 15.0%
!! AACTATAAACAATACTAATT+AGG - chr1_1:67469407-67469426 Msa0038180:CDS 15.0%
!! AAATCCAAACTTATTATATT+TGG - chr1_1:67469533-67469552 Msa0038180:CDS 15.0%
!! ATAACCAAATATAATAAGTT+TGG + chr1_1:67469540-67469559 None:intergenic 15.0%
!! TATTTATTATCAAATCTGTT+GGG + chr1_1:67470207-67470226 None:intergenic 15.0%
!! GTATATTTAGCTAATTAGTT+AGG - chr1_1:67469376-67469395 Msa0038180:CDS 20.0%
!! GTTAAAAAAATGAAAATGCA+GGG - chr1_1:67469565-67469584 Msa0038180:CDS 20.0%
!! AAAATAAAGGTTTACTTACT+AGG + chr1_1:67469780-67469799 None:intergenic 20.0%
!! GTATTTATTATCAAATCTGT+TGG + chr1_1:67470208-67470227 None:intergenic 20.0%
!! TACTTGTAAGAATGTTAATT+TGG - chr1_1:67470619-67470638 Msa0038180:CDS 20.0%
!! GTATATTTAGCTAATTAGTT+AGG - chr1_1:67469376-67469395 Msa0038180:CDS 20.0%
!! GTTAAAAAAATGAAAATGCA+GGG - chr1_1:67469565-67469584 Msa0038180:CDS 20.0%
!! AAAATAAAGGTTTACTTACT+AGG + chr1_1:67469780-67469799 None:intergenic 20.0%
!! GTATTTATTATCAAATCTGT+TGG + chr1_1:67470208-67470227 None:intergenic 20.0%
!! TACTTGTAAGAATGTTAATT+TGG - chr1_1:67470619-67470638 Msa0038180:CDS 20.0%
!!! CAATGTTTTATTGACATATG+TGG - chr1_1:67469473-67469492 Msa0038180:CDS 25.0%
! GGTTAAAAAAATGAAAATGC+AGG - chr1_1:67469564-67469583 Msa0038180:CDS 25.0%
!!! AAGTTTTTCGATTATCTTGA+AGG + chr1_1:67469677-67469696 None:intergenic 25.0%
! TTAGAAATGTGATAACTACT+AGG - chr1_1:67470489-67470508 Msa0038180:CDS 25.0%
! TAAAACTAACCTCTTGAAAA+GGG + chr1_1:67470527-67470546 None:intergenic 25.0%
! TAAGGAACATTATTAGATTC+AGG + chr1_1:67470550-67470569 None:intergenic 25.0%
!!! CAATGTTTTATTGACATATG+TGG - chr1_1:67469473-67469492 Msa0038180:CDS 25.0%
! GGTTAAAAAAATGAAAATGC+AGG - chr1_1:67469564-67469583 Msa0038180:CDS 25.0%
!!! AAGTTTTTCGATTATCTTGA+AGG + chr1_1:67469677-67469696 None:intergenic 25.0%
! TTAGAAATGTGATAACTACT+AGG - chr1_1:67470489-67470508 Msa0038180:CDS 25.0%
! TAAAACTAACCTCTTGAAAA+GGG + chr1_1:67470527-67470546 None:intergenic 25.0%
! TAAGGAACATTATTAGATTC+AGG + chr1_1:67470550-67470569 None:intergenic 25.0%
!! AAAGGTATGGATTAGAAGAA+AGG + chr1_1:67469140-67469159 None:intergenic 30.0%
GAGAAAATGAAAGAAAGGTA+TGG + chr1_1:67469153-67469172 None:intergenic 30.0%
GATGTGAGAAAATGAAAGAA+AGG + chr1_1:67469158-67469177 None:intergenic 30.0%
! AAGATCTTCAATGATGATGT+TGG - chr1_1:67469289-67469308 Msa0038180:CDS 30.0%
! ATAGAAGCTGTACATTTTCA+CGG + chr1_1:67469452-67469471 None:intergenic 30.0%
TGAATCTGTTTAGCTAACTT+TGG - chr1_1:67469510-67469529 Msa0038180:CDS 30.0%
!! TTGTGATGGATCAGTATTAT+TGG - chr1_1:67469588-67469607 Msa0038180:CDS 30.0%
CCAACTTCTCACAAAAATAA+AGG + chr1_1:67469793-67469812 None:intergenic 30.0%
!!! CCTTTATTTTTGTGAGAAGT+TGG - chr1_1:67469790-67469809 Msa0038180:CDS 30.0%
!! TTGTTTAAGGTTTTTGCCAT+AGG + chr1_1:67470133-67470152 None:intergenic 30.0%
! AAGTAGGACAAGTTTGTTTA+AGG + chr1_1:67470146-67470165 None:intergenic 30.0%
TCTTATCAGTGTACAAATCT+TGG + chr1_1:67470272-67470291 None:intergenic 30.0%
AAGATTTGTACACTGATAAG+AGG - chr1_1:67470271-67470290 Msa0038180:intron 30.0%
TGTTACTGCTATGCTTAAAA+TGG - chr1_1:67470350-67470369 Msa0038180:intron 30.0%
GTTACTGCTATGCTTAAAAT+GGG - chr1_1:67470351-67470370 Msa0038180:intron 30.0%
!! TATTTGTTTCCCTTTTCAAG+AGG - chr1_1:67470515-67470534 Msa0038180:CDS 30.0%
GTAAAACTAACCTCTTGAAA+AGG + chr1_1:67470528-67470547 None:intergenic 30.0%
!! AAAGGTATGGATTAGAAGAA+AGG + chr1_1:67469140-67469159 None:intergenic 30.0%
GAGAAAATGAAAGAAAGGTA+TGG + chr1_1:67469153-67469172 None:intergenic 30.0%
GATGTGAGAAAATGAAAGAA+AGG + chr1_1:67469158-67469177 None:intergenic 30.0%
! AAGATCTTCAATGATGATGT+TGG - chr1_1:67469289-67469308 Msa0038180:CDS 30.0%
! ATAGAAGCTGTACATTTTCA+CGG + chr1_1:67469452-67469471 None:intergenic 30.0%
TGAATCTGTTTAGCTAACTT+TGG - chr1_1:67469510-67469529 Msa0038180:CDS 30.0%
!! TTGTGATGGATCAGTATTAT+TGG - chr1_1:67469588-67469607 Msa0038180:CDS 30.0%
CCAACTTCTCACAAAAATAA+AGG + chr1_1:67469793-67469812 None:intergenic 30.0%
!!! CCTTTATTTTTGTGAGAAGT+TGG - chr1_1:67469790-67469809 Msa0038180:CDS 30.0%
!! TTGTTTAAGGTTTTTGCCAT+AGG + chr1_1:67470133-67470152 None:intergenic 30.0%
! AAGTAGGACAAGTTTGTTTA+AGG + chr1_1:67470146-67470165 None:intergenic 30.0%
TCTTATCAGTGTACAAATCT+TGG + chr1_1:67470272-67470291 None:intergenic 30.0%
AAGATTTGTACACTGATAAG+AGG - chr1_1:67470271-67470290 Msa0038180:intron 30.0%
TGTTACTGCTATGCTTAAAA+TGG - chr1_1:67470350-67470369 Msa0038180:intron 30.0%
GTTACTGCTATGCTTAAAAT+GGG - chr1_1:67470351-67470370 Msa0038180:intron 30.0%
!! TATTTGTTTCCCTTTTCAAG+AGG - chr1_1:67470515-67470534 Msa0038180:CDS 30.0%
GTAAAACTAACCTCTTGAAA+AGG + chr1_1:67470528-67470547 None:intergenic 30.0%
! AGGACATTTTGAATCGTAGA+AGG + chr1_1:67469236-67469255 None:intergenic 35.0%
CTGATGATAGATTCAAGCTT+AGG + chr1_1:67469256-67469275 None:intergenic 35.0%
GATGGATCAGTATTATTGGA+TGG - chr1_1:67469592-67469611 Msa0038180:CDS 35.0%
AGTAATATAGAGAAGCAGTG+TGG - chr1_1:67469700-67469719 Msa0038180:CDS 35.0%
!! CATGTTTTTACATTGCAGTC+AGG - chr1_1:67469862-67469881 Msa0038180:CDS 35.0%
ACTACAAAATTCCCTTAGGA+AGG - chr1_1:67469893-67469912 Msa0038180:intron 35.0%
TGGATTAACATTTGCAACAC+AGG - chr1_1:67469921-67469940 Msa0038180:intron 35.0%
ATTAACATTTGCAACACAGG+AGG - chr1_1:67469924-67469943 Msa0038180:intron 35.0%
!! ATTGTTGTTGTGTTGCTTGA+TGG + chr1_1:67469973-67469992 None:intergenic 35.0%
!!! TGTAGGGTTAAGGTTTTTTG+TGG + chr1_1:67470010-67470029 None:intergenic 35.0%
! TAAGGTTTTTGCCATAGGTT+TGG + chr1_1:67470128-67470147 None:intergenic 35.0%
! ACTACGAATATCTAGAACTG+TGG + chr1_1:67470184-67470203 None:intergenic 35.0%
!!! AATGTTTTGACTGGAACCAA+AGG - chr1_1:67470381-67470400 Msa0038180:intron 35.0%
ATTAGCACGAATTTCTCCTT+TGG + chr1_1:67470400-67470419 None:intergenic 35.0%
CAAATCTTTCCTTACTTCTG+TGG - chr1_1:67470443-67470462 Msa0038180:CDS 35.0%
! AGGACATTTTGAATCGTAGA+AGG + chr1_1:67469236-67469255 None:intergenic 35.0%
CTGATGATAGATTCAAGCTT+AGG + chr1_1:67469256-67469275 None:intergenic 35.0%
GATGGATCAGTATTATTGGA+TGG - chr1_1:67469592-67469611 Msa0038180:CDS 35.0%
AGTAATATAGAGAAGCAGTG+TGG - chr1_1:67469700-67469719 Msa0038180:CDS 35.0%
!! CATGTTTTTACATTGCAGTC+AGG - chr1_1:67469862-67469881 Msa0038180:CDS 35.0%
ACTACAAAATTCCCTTAGGA+AGG - chr1_1:67469893-67469912 Msa0038180:intron 35.0%
TGGATTAACATTTGCAACAC+AGG - chr1_1:67469921-67469940 Msa0038180:intron 35.0%
ATTAACATTTGCAACACAGG+AGG - chr1_1:67469924-67469943 Msa0038180:intron 35.0%
!! ATTGTTGTTGTGTTGCTTGA+TGG + chr1_1:67469973-67469992 None:intergenic 35.0%
!!! TGTAGGGTTAAGGTTTTTTG+TGG + chr1_1:67470010-67470029 None:intergenic 35.0%
! TAAGGTTTTTGCCATAGGTT+TGG + chr1_1:67470128-67470147 None:intergenic 35.0%
! ACTACGAATATCTAGAACTG+TGG + chr1_1:67470184-67470203 None:intergenic 35.0%
!!! AATGTTTTGACTGGAACCAA+AGG - chr1_1:67470381-67470400 Msa0038180:intron 35.0%
ATTAGCACGAATTTCTCCTT+TGG + chr1_1:67470400-67470419 None:intergenic 35.0%
CAAATCTTTCCTTACTTCTG+TGG - chr1_1:67470443-67470462 Msa0038180:CDS 35.0%
CAATGGCTTATGCTTCTTGT+AGG - chr1_1:67469101-67469120 Msa0038180:three_prime_UTR 40.0%
AAACCTCCTCCTATAGTGAA+GGG - chr1_1:67469199-67469218 Msa0038180:three_prime_UTR 40.0%
CATGATAGTCCCTTCACTAT+AGG + chr1_1:67469211-67469230 None:intergenic 40.0%
CTATAGTGAAGGGACTATCA+TGG - chr1_1:67469209-67469228 Msa0038180:three_prime_UTR 40.0%
TTACCTGAACAAAGCAGTCA+TGG + chr1_1:67469345-67469364 None:intergenic 40.0%
ATGAAAATGCAGGGTTGTGA+TGG - chr1_1:67469574-67469593 Msa0038180:CDS 40.0%
TTCGATTATCTTGAAGGCCT+CGG + chr1_1:67469671-67469690 None:intergenic 40.0%
! GTTTTTACATTGCAGTCAGG+AGG - chr1_1:67469865-67469884 Msa0038180:CDS 40.0%
! CCTAAGGGAATTTTGTAGTC+TGG + chr1_1:67469892-67469911 None:intergenic 40.0%
CCAGACTACAAAATTCCCTT+AGG - chr1_1:67469889-67469908 Msa0038180:intron 40.0%
AATCCATCTCTCCTTCCTAA+GGG + chr1_1:67469907-67469926 None:intergenic 40.0%
TAATCCATCTCTCCTTCCTA+AGG + chr1_1:67469908-67469927 None:intergenic 40.0%
CTACTACATCTGTAGGGTTA+AGG + chr1_1:67470020-67470039 None:intergenic 40.0%
! AGAGTGCTACTACATCTGTA+GGG + chr1_1:67470026-67470045 None:intergenic 40.0%
TGTTTGTGAAAGAACTGCAG+TGG + chr1_1:67470074-67470093 None:intergenic 40.0%
! GTGTTATCAGTGTTGGAAGT+AGG + chr1_1:67470162-67470181 None:intergenic 40.0%
!! AACTGTGGTGTTATCAGTGT+TGG + chr1_1:67470169-67470188 None:intergenic 40.0%
GTTGATCTTATGAACCGTCA+GGG - chr1_1:67470231-67470250 Msa0038180:intron 40.0%
GTACACTGATAAGAGGACTA+AGG - chr1_1:67470278-67470297 Msa0038180:intron 40.0%
!!! GGACAGCTTAATGTTTTGAC+TGG - chr1_1:67470372-67470391 Msa0038180:intron 40.0%
TTCGTGCTAATTGCTCTGTT+AGG - chr1_1:67470409-67470428 Msa0038180:CDS 40.0%
CATCTTTCACCACAGAAGTA+AGG + chr1_1:67470455-67470474 None:intergenic 40.0%
TACTTCTGTGGTGAAAGATG+CGG - chr1_1:67470455-67470474 Msa0038180:CDS 40.0%
CCATTACAGTAGTACACGTA+AGG + chr1_1:67470568-67470587 None:intergenic 40.0%
CCTTACGTGTACTACTGTAA+TGG - chr1_1:67470565-67470584 Msa0038180:CDS 40.0%
CAATGGCTTATGCTTCTTGT+AGG - chr1_1:67469101-67469120 Msa0038180:three_prime_UTR 40.0%
AAACCTCCTCCTATAGTGAA+GGG - chr1_1:67469199-67469218 Msa0038180:three_prime_UTR 40.0%
CATGATAGTCCCTTCACTAT+AGG + chr1_1:67469211-67469230 None:intergenic 40.0%
CTATAGTGAAGGGACTATCA+TGG - chr1_1:67469209-67469228 Msa0038180:three_prime_UTR 40.0%
TTACCTGAACAAAGCAGTCA+TGG + chr1_1:67469345-67469364 None:intergenic 40.0%
ATGAAAATGCAGGGTTGTGA+TGG - chr1_1:67469574-67469593 Msa0038180:CDS 40.0%
TTCGATTATCTTGAAGGCCT+CGG + chr1_1:67469671-67469690 None:intergenic 40.0%
! GTTTTTACATTGCAGTCAGG+AGG - chr1_1:67469865-67469884 Msa0038180:CDS 40.0%
! CCTAAGGGAATTTTGTAGTC+TGG + chr1_1:67469892-67469911 None:intergenic 40.0%
CCAGACTACAAAATTCCCTT+AGG - chr1_1:67469889-67469908 Msa0038180:intron 40.0%
AATCCATCTCTCCTTCCTAA+GGG + chr1_1:67469907-67469926 None:intergenic 40.0%
TAATCCATCTCTCCTTCCTA+AGG + chr1_1:67469908-67469927 None:intergenic 40.0%
CTACTACATCTGTAGGGTTA+AGG + chr1_1:67470020-67470039 None:intergenic 40.0%
! AGAGTGCTACTACATCTGTA+GGG + chr1_1:67470026-67470045 None:intergenic 40.0%
TGTTTGTGAAAGAACTGCAG+TGG + chr1_1:67470074-67470093 None:intergenic 40.0%
! GTGTTATCAGTGTTGGAAGT+AGG + chr1_1:67470162-67470181 None:intergenic 40.0%
!! AACTGTGGTGTTATCAGTGT+TGG + chr1_1:67470169-67470188 None:intergenic 40.0%
GTTGATCTTATGAACCGTCA+GGG - chr1_1:67470231-67470250 Msa0038180:intron 40.0%
GTACACTGATAAGAGGACTA+AGG - chr1_1:67470278-67470297 Msa0038180:intron 40.0%
!!! GGACAGCTTAATGTTTTGAC+TGG - chr1_1:67470372-67470391 Msa0038180:intron 40.0%
TTCGTGCTAATTGCTCTGTT+AGG - chr1_1:67470409-67470428 Msa0038180:CDS 40.0%
CATCTTTCACCACAGAAGTA+AGG + chr1_1:67470455-67470474 None:intergenic 40.0%
TACTTCTGTGGTGAAAGATG+CGG - chr1_1:67470455-67470474 Msa0038180:CDS 40.0%
CCATTACAGTAGTACACGTA+AGG + chr1_1:67470568-67470587 None:intergenic 40.0%
CCTTACGTGTACTACTGTAA+TGG - chr1_1:67470565-67470584 Msa0038180:CDS 40.0%
CTTCACTATAGGAGGAGGTT+TGG + chr1_1:67469200-67469219 None:intergenic 45.0%
CAAACCTCCTCCTATAGTGA+AGG - chr1_1:67469198-67469217 Msa0038180:three_prime_UTR 45.0%
GATAGTCCCTTCACTATAGG+AGG + chr1_1:67469208-67469227 None:intergenic 45.0%
CAAAGCAGTCATGGAAGTGA+AGG + chr1_1:67469336-67469355 None:intergenic 45.0%
! CTTCCATGACTGCTTTGTTC+AGG - chr1_1:67469339-67469358 Msa0038180:CDS 45.0%
CACCACCAAACTTGAGTCTT+AGG - chr1_1:67469644-67469663 Msa0038180:CDS 45.0%
GTCCTAAGACTCAAGTTTGG+TGG + chr1_1:67469649-67469668 None:intergenic 45.0%
TCGGTCCTAAGACTCAAGTT+TGG + chr1_1:67469652-67469671 None:intergenic 45.0%
AAACTTGAGTCTTAGGACCG+AGG - chr1_1:67469651-67469670 Msa0038180:CDS 45.0%
TAGGAAAACAGCATCACGAG+CGG + chr1_1:67469761-67469780 None:intergenic 45.0%
ATTCCCTTAGGAAGGAGAGA+TGG - chr1_1:67469901-67469920 Msa0038180:intron 45.0%
!! GTTGTGTTGCTTGATGGTGA+AGG + chr1_1:67469967-67469986 None:intergenic 45.0%
!! GAGAGTGCTACTACATCTGT+AGG + chr1_1:67470027-67470046 None:intergenic 45.0%
ACAGATGTAGTAGCACTCTC+AGG - chr1_1:67470027-67470046 Msa0038180:CDS 45.0%
!!! CCATGACAGGGTCTTGTTTT+GGG + chr1_1:67470104-67470123 None:intergenic 45.0%
!!! TCCATGACAGGGTCTTGTTT+TGG + chr1_1:67470105-67470124 None:intergenic 45.0%
! CATAGGTTTGGTCCATGACA+GGG + chr1_1:67470116-67470135 None:intergenic 45.0%
CGTTGATCTTATGAACCGTC+AGG - chr1_1:67470230-67470249 Msa0038180:intron 45.0%
CTTCACTATAGGAGGAGGTT+TGG + chr1_1:67469200-67469219 None:intergenic 45.0%
CAAACCTCCTCCTATAGTGA+AGG - chr1_1:67469198-67469217 Msa0038180:three_prime_UTR 45.0%
GATAGTCCCTTCACTATAGG+AGG + chr1_1:67469208-67469227 None:intergenic 45.0%
CAAAGCAGTCATGGAAGTGA+AGG + chr1_1:67469336-67469355 None:intergenic 45.0%
! CTTCCATGACTGCTTTGTTC+AGG - chr1_1:67469339-67469358 Msa0038180:CDS 45.0%
CACCACCAAACTTGAGTCTT+AGG - chr1_1:67469644-67469663 Msa0038180:CDS 45.0%
GTCCTAAGACTCAAGTTTGG+TGG + chr1_1:67469649-67469668 None:intergenic 45.0%
TCGGTCCTAAGACTCAAGTT+TGG + chr1_1:67469652-67469671 None:intergenic 45.0%
AAACTTGAGTCTTAGGACCG+AGG - chr1_1:67469651-67469670 Msa0038180:CDS 45.0%
TAGGAAAACAGCATCACGAG+CGG + chr1_1:67469761-67469780 None:intergenic 45.0%
ATTCCCTTAGGAAGGAGAGA+TGG - chr1_1:67469901-67469920 Msa0038180:intron 45.0%
!! GTTGTGTTGCTTGATGGTGA+AGG + chr1_1:67469967-67469986 None:intergenic 45.0%
!! GAGAGTGCTACTACATCTGT+AGG + chr1_1:67470027-67470046 None:intergenic 45.0%
ACAGATGTAGTAGCACTCTC+AGG - chr1_1:67470027-67470046 Msa0038180:CDS 45.0%
!!! CCATGACAGGGTCTTGTTTT+GGG + chr1_1:67470104-67470123 None:intergenic 45.0%
!!! TCCATGACAGGGTCTTGTTT+TGG + chr1_1:67470105-67470124 None:intergenic 45.0%
! CATAGGTTTGGTCCATGACA+GGG + chr1_1:67470116-67470135 None:intergenic 45.0%
CGTTGATCTTATGAACCGTC+AGG - chr1_1:67470230-67470249 Msa0038180:intron 45.0%
AGTCCCTTCACTATAGGAGG+AGG + chr1_1:67469205-67469224 None:intergenic 50.0%
GATGATGTTGGTCAAGCTGC+TGG - chr1_1:67469301-67469320 Msa0038180:CDS 50.0%
GGTGGTGCATCTTTCTCACT+TGG + chr1_1:67469631-67469650 None:intergenic 50.0%
GATGTAGTAGCACTCTCAGG+TGG - chr1_1:67470030-67470049 Msa0038180:CDS 50.0%
CTCTCAGGTGGTCACACAAT+AGG - chr1_1:67470042-67470061 Msa0038180:CDS 50.0%
CCCAAAACAAGACCCTGTCA+TGG - chr1_1:67470101-67470120 Msa0038180:CDS 50.0%
! CCATAGGTTTGGTCCATGAC+AGG + chr1_1:67470117-67470136 None:intergenic 50.0%
CCTGTCATGGACCAAACCTA+TGG - chr1_1:67470114-67470133 Msa0038180:CDS 50.0%
CCGAAGTAAAGAGACCCTGA+CGG + chr1_1:67470248-67470267 None:intergenic 50.0%
CCGTCAGGGTCTCTTTACTT+CGG - chr1_1:67470245-67470264 Msa0038180:intron 50.0%
TTCTGTGGTGAAAGATGCGG+TGG - chr1_1:67470458-67470477 Msa0038180:CDS 50.0%
AGTCCCTTCACTATAGGAGG+AGG + chr1_1:67469205-67469224 None:intergenic 50.0%
GATGATGTTGGTCAAGCTGC+TGG - chr1_1:67469301-67469320 Msa0038180:CDS 50.0%
GGTGGTGCATCTTTCTCACT+TGG + chr1_1:67469631-67469650 None:intergenic 50.0%
GATGTAGTAGCACTCTCAGG+TGG - chr1_1:67470030-67470049 Msa0038180:CDS 50.0%
CTCTCAGGTGGTCACACAAT+AGG - chr1_1:67470042-67470061 Msa0038180:CDS 50.0%
CCCAAAACAAGACCCTGTCA+TGG - chr1_1:67470101-67470120 Msa0038180:CDS 50.0%
! CCATAGGTTTGGTCCATGAC+AGG + chr1_1:67470117-67470136 None:intergenic 50.0%
CCTGTCATGGACCAAACCTA+TGG - chr1_1:67470114-67470133 Msa0038180:CDS 50.0%
CCGAAGTAAAGAGACCCTGA+CGG + chr1_1:67470248-67470267 None:intergenic 50.0%
CCGTCAGGGTCTCTTTACTT+CGG - chr1_1:67470245-67470264 Msa0038180:intron 50.0%
TTCTGTGGTGAAAGATGCGG+TGG - chr1_1:67470458-67470477 Msa0038180:CDS 50.0%
AACAGCATCACGAGCGGCAA+TGG + chr1_1:67469755-67469774 None:intergenic 55.0%
AACAGCATCACGAGCGGCAA+TGG + chr1_1:67469755-67469774 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 67469097 67470669 67469097 ID=Msa0038180;Name=Msa0038180
chr1_1 mRNA 67469097 67470669 67469097 ID=Msa0038180-mRNA-1;Parent=Msa0038180;Name=Msa0038180-mRNA-1;_AED=0.06;_eAED=0.06;_QI=6|1|1|1|1|1|3|169|357
chr1_1 exon 67469097 67469886 67469097 ID=Msa0038180-mRNA-1:exon:21936;Parent=Msa0038180-mRNA-1
chr1_1 exon 67469986 67470180 67469986 ID=Msa0038180-mRNA-1:exon:21935;Parent=Msa0038180-mRNA-1
chr1_1 exon 67470406 67470669 67470406 ID=Msa0038180-mRNA-1:exon:21934;Parent=Msa0038180-mRNA-1
chr1_1 five_prime_UTR 67470664 67470669 67470664 ID=Msa0038180-mRNA-1:five_prime_utr;Parent=Msa0038180-mRNA-1
chr1_1 CDS 67470406 67470663 67470406 ID=Msa0038180-mRNA-1:cds;Parent=Msa0038180-mRNA-1
chr1_1 CDS 67469986 67470180 67469986 ID=Msa0038180-mRNA-1:cds;Parent=Msa0038180-mRNA-1
chr1_1 CDS 67469266 67469886 67469266 ID=Msa0038180-mRNA-1:cds;Parent=Msa0038180-mRNA-1
chr1_1 three_prime_UTR 67469097 67469265 67469097 ID=Msa0038180-mRNA-1:three_prime_utr;Parent=Msa0038180-mRNA-1
Gene Sequence

>Msa0038180

ATGGCTTATGCTTCTTGTAGGAGTGCTTTCTTCACCTTTCTTCTAATCCATACCTTTCTTTCATTTTCTCACATCAAAGTGTCTGAAGCACAAGCCAAACCTCCTCCTATAGTGAAGGGACTATCATGGACCTTCTACGATTCAAAATGTCCTAAGCTTGAATCTATCATCAGAAAAGAGCTCAAGAAGATCTTCAATGATGATGTTGGTCAAGCTGCTGGCTTGCTTCGCCTTCACTTCCATGACTGCTTTGTTCAGGGTTGTGATGGATCAGTATTATTGGATGGATCAGCAAGTGAGCCAAGTGAGAAAGATGCACCACCAAACTTGAGTCTTAGGACCGAGGCCTTCAAGATAATCGAAAAACTTCGTAGTAATATAGAGAAGCAGTGTGGAAGAATCGTCTCTTGTGCTGATATCACTGCCATTGCCGCTCGTGATGCTGTTTTCCTATCAGGAGGACCAGACTACAAAATTCCCTTAGGAAGGAGAGATGGATTAACATTTGCAACACAGGAGGTAACATTAGACAATCTTCCTTCACCATCAAGCAACACAACAACAATCTTAAACTCACTTGCCACAAAAAACCTTAACCCTACAGATGTAGTAGCACTCTCAGGTGGTCACACAATAGGCATAAGCCACTGCAGTTCTTTCACAAACAGACTCTACCCAAAACAAGACCCTGTCATGGACCAAACCTATGGCAAAAACCTTAAACAAACTTGTCCTACTTCCAACACTGATAACACCACAGTTCTAGATATTCGTAGTCCCAACAGATTTGATAATAAATACTACGTTGATCTTATGAACCGTCAGGGTCTCTTTACTTCGGACCAAGATTTGTACACTGATAAGAGGACTAAGGATATTGTTACTAACTTTGCTGTGAATCAATCTTTGTTCTTTGAGAAATTTGTTACTGCTATGCTTAAAATGGGACAGCTTAATGTTTTGACTGGAACCAAAGGAGAAATTCGTGCTAATTGCTCTGTTAGGAATAAAAATAGCAAATCTTTCCTTACTTCTGTGGTGAAAGATGCGGTGGAAAGATTTTTAGAAATGTGA
Protein sequence

>Msa0038180

MAYASCRSAFFTFLLIHTFLSFSHIKVSEAQAKPPPIVKGLSWTFYDSKCPKLESIIRKELKKIFNDDVGQAAGLLRLHFHDCFVQGCDGSVLLDGSASEPSEKDAPPNLSLRTEAFKIIEKLRSNIEKQCGRIVSCADITAIAARDAVFLSGGPDYKIPLGRRDGLTFATQEVTLDNLPSPSSNTTTILNSLATKNLNPTDVVALSGGHTIGISHCSSFTNRLYPKQDPVMDQTYGKNLKQTCPTSNTDNTTVLDIRSPNRFDNKYYVDLMNRQGLFTSDQDLYTDKRTKDIVTNFAVNQSLFFEKFVTAMLKMGQLNVLTGTKGEIRANCSVRNKNSKSFLTSVVKDAVERFLEM*