AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1459760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459760 MtrunA17_Chr5g0393401 63.492 504 117 8 5 508 9 445 0.0 567
Msa1459760 MtrunA17_Chr3g0146071 95.652 276 10 1 235 508 168 443 0.0 525
Msa1459760 MtrunA17_Chr3g0146071 100.000 177 0 0 1 177 1 177 6.34e-127 379
Msa1459760 MtrunA17_Chr3g0117101 61.940 268 92 3 242 499 444 711 1.93e-114 355
Msa1459760 MtrunA17_Chr3g0117101 67.614 176 53 1 5 176 268 443 9.67e-78 258
Msa1459760 MtrunA17_Chr3g0117101 66.477 176 55 1 5 176 13 188 1.04e-76 255
Msa1459760 MtrunA17_Chr4g0027021 58.964 251 99 2 243 489 165 415 1.71e-101 311
Msa1459760 MtrunA17_Chr4g0027021 58.750 160 66 0 17 176 4 163 1.79e-62 210
Msa1459760 MtrunA17_Chr2g0321941 33.742 163 99 2 232 385 173 335 5.76e-20 92.0
Msa1459760 MtrunA17_Chr4g0062751 28.235 170 114 4 242 403 352 521 8.36e-19 89.7
Msa1459760 MtrunA17_Chr8g0384361 30.921 152 89 4 242 383 46 191 1.05e-14 73.9
Msa1459760 MtrunA17_Chr4g0061411 28.758 153 103 4 238 384 177 329 1.42e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459760 AT4G38130.1 80.797 276 51 1 235 508 167 442 6.51e-147 431
Msa1459760 AT4G38130.1 93.220 177 11 1 1 177 1 176 3.62e-116 352
Msa1459760 AT4G38130.2 80.797 276 51 1 235 508 167 442 9.61e-147 429
Msa1459760 AT4G38130.2 93.220 177 11 1 1 177 1 176 4.43e-116 351
Msa1459760 AT5G63110.1 72.650 234 63 1 242 474 180 413 6.20e-121 363
Msa1459760 AT5G63110.1 64.571 175 59 2 2 174 4 177 5.74e-73 239
Msa1459760 AT5G35600.1 42.797 472 198 8 10 476 2 406 7.82e-118 353
Msa1459760 AT3G44680.1 58.400 250 102 2 243 491 165 413 4.59e-101 311
Msa1459760 AT3G44680.1 57.500 160 68 0 17 176 4 163 1.16e-61 208
Msa1459760 AT3G44490.1 44.138 145 80 1 347 491 2 145 1.61e-38 138
Msa1459760 AT3G44660.1 39.310 145 71 2 347 491 2 129 8.84e-28 108
Msa1459760 AT3G18520.4 27.570 214 146 4 242 446 305 518 2.74e-21 97.4
Msa1459760 AT3G18520.2 27.570 214 146 4 242 446 305 518 3.09e-21 97.4
Msa1459760 AT3G18520.1 27.488 211 144 4 242 443 305 515 6.91e-21 96.3
Msa1459760 AT1G08460.1 34.706 170 99 3 228 385 157 326 3.50e-19 89.7
Msa1459760 AT3G18520.3 30.986 142 94 3 242 379 305 446 2.58e-17 84.7
Msa1459760 AT1G08460.2 40.385 104 58 1 240 339 172 275 8.38e-16 79.0
Msa1459760 AT5G61070.1 28.947 152 102 4 239 384 220 371 2.82e-14 76.3
Msa1459760 AT4G33470.1 35.714 98 62 1 242 339 231 327 4.53e-14 74.7
Msa1459760 AT5G61060.1 28.947 152 102 4 239 384 187 338 7.04e-14 74.7
Msa1459760 AT5G61060.2 28.846 156 101 4 239 384 187 342 1.01e-12 71.2

Find 128 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATTACTTTGCCGATTAA+AGG 0.164939 tig0040438:+5188 None:intergenic
GAAAATAATCACCAAATTTA+TGG 0.167816 tig0040438:+5321 None:intergenic
GATGCTTTAATCTTTCAATT+AGG 0.168446 tig0040438:-5100 Msa1459760:CDS
ATATGATCCTGTTGTGTTTC+AGG 0.173298 tig0040438:+8134 None:intergenic
CGATGCTGCAACTTTCTTCT+AGG 0.189111 tig0040438:-6303 Msa1459760:CDS
TGCTCCCAGTGTTCAATTTC+AGG 0.211713 tig0040438:-4352 Msa1459760:CDS
ACTGTTTCTTTCCATAAATT+TGG 0.213488 tig0040438:-5332 Msa1459760:CDS
ATGCTTTAATCTTTCAATTA+GGG 0.231751 tig0040438:-5099 Msa1459760:CDS
TCCAGAAGCCTCACACTTCT+TGG 0.274591 tig0040438:+7950 None:intergenic
AATGTGATATTGCTGTTAAC+TGG 0.302265 tig0040438:-7992 Msa1459760:CDS
CATGCCCTTCTTGCCCACTA+TGG 0.309164 tig0040438:-8260 Msa1459760:CDS
GCCAAGAAGTGTGAGGCTTC+TGG 0.309292 tig0040438:-7951 Msa1459760:CDS
TATGATCCTGTTGTGTTTCA+GGG 0.318503 tig0040438:+8135 None:intergenic
GAAGATTGTCCTGTCTTTGA+TGG 0.327128 tig0040438:-8083 Msa1459760:CDS
GAGCATTGGGATCCAGATTC+TGG 0.330640 tig0040438:-3575 Msa1459760:CDS
CACGAGTATTATGAATATTT+CGG 0.338501 tig0040438:-4486 Msa1459760:CDS
ACAGAGGAGGTCGCCAGAAC+TGG 0.352650 tig0040438:-6441 Msa1459760:CDS
GTGACTGGCTGTCTGTATTA+TGG 0.358068 tig0040438:+6404 None:intergenic
TTTCTCTCTTGACTTTGCTT+TGG 0.363823 tig0040438:+3440 None:intergenic
TCAATGTCCATGCCAGAATC+TGG 0.374372 tig0040438:+3563 None:intergenic
AGGCCTCCTGATTCTGATCT+TGG 0.377155 tig0040438:-4327 Msa1459760:CDS
GCAAAGTAATGGAAATCTTT+AGG 0.383254 tig0040438:-5178 Msa1459760:CDS
TGTGGTGCAGACTCTTTATC+TGG 0.383462 tig0040438:-5134 Msa1459760:CDS
ACTGGCGACTTGCGTGATAT+TGG 0.384986 tig0040438:-5293 Msa1459760:CDS
TTGTTGTTCAAACCTTTAAT+CGG 0.387133 tig0040438:-5200 Msa1459760:CDS
GCGGATACGATGTGGCTTCA+TGG 0.387603 tig0040438:+8289 None:intergenic
CTTCCGTCTTCTGCACCTGA+TGG 0.389623 tig0040438:-8380 Msa1459760:CDS
GAGGTTGGGAATTATTATTA+TGG 0.397863 tig0040438:-8323 Msa1459760:CDS
TTCCGTCTTCTGCACCTGAT+GGG 0.421600 tig0040438:-8379 Msa1459760:CDS
GACTTGCGTGATATTGGATA+TGG 0.432369 tig0040438:-5287 Msa1459760:CDS
ACCTCTCCAAGATCAGAATC+AGG 0.444389 tig0040438:+4321 None:intergenic
AATGTTCCCCTCTTGCTACT+AGG 0.449463 tig0040438:-5041 Msa1459760:CDS
TCTTTCTGTCAAACTTATGC+TGG 0.451415 tig0040438:-8053 Msa1459760:CDS
TCTTTATCTGGAGACAGGTT+GGG 0.453512 tig0040438:-5122 Msa1459760:CDS
GATGCTGCAACTTTCTTCTA+GGG 0.453738 tig0040438:-6302 Msa1459760:intron
GCAACATGAAGGGTATAATC+TGG 0.458383 tig0040438:+4462 None:intergenic
GGGAATTATTATTATGGCCA+AGG 0.467920 tig0040438:-8317 Msa1459760:CDS
TGAAGATAGAGATGAGCATT+GGG 0.469243 tig0040438:-3588 Msa1459760:CDS
CTTTCCTGAAATTGAACACT+GGG 0.475024 tig0040438:+4348 None:intergenic
CTCTTTATCTGGAGACAGGT+TGG 0.477261 tig0040438:-5123 Msa1459760:CDS
TATTTCTATGATCCTGAGGT+TGG 0.479248 tig0040438:-8338 Msa1459760:CDS
ATTTCTATGATCCTGAGGTT+GGG 0.481090 tig0040438:-8337 Msa1459760:CDS
TTCTGTCAAACTTATGCTGG+AGG 0.481239 tig0040438:-8050 Msa1459760:CDS
CATAATCATCAGCATGAAAA+CGG 0.481588 tig0040438:+8180 None:intergenic
ATACAGCAACCACCCAGTTC+TGG 0.484751 tig0040438:+6428 None:intergenic
CGTGATATTGGATATGGAAA+GGG 0.488820 tig0040438:-5281 Msa1459760:CDS
TAATAATAATTCCCAACCTC+AGG 0.489340 tig0040438:+8326 None:intergenic
CACTGGAGAACAACTGCACC+GGG 0.492326 tig0040438:+5155 None:intergenic
GATATTATCAAGTAAATGTC+GGG 0.495895 tig0040438:+4413 None:intergenic
TCGTTTCTATCTCTAGTGAC+TGG 0.503731 tig0040438:+6389 None:intergenic
ACCTTTAATCGGCAAAGTAA+TGG 0.504079 tig0040438:-5189 Msa1459760:CDS
ATGAAGATAGAGATGAGCAT+TGG 0.505454 tig0040438:-3589 Msa1459760:CDS
CAGACTCTTTATCTGGAGAC+AGG 0.508402 tig0040438:-5127 Msa1459760:CDS
CATAACCCCTGAAACACAAC+AGG 0.512836 tig0040438:-8141 Msa1459760:CDS
TCCCTGTCTCTAGCAGGAAA+AGG 0.513158 tig0040438:+8209 None:intergenic
GTGGTGGCGGTTACACCATT+CGG 0.513823 tig0040438:-5019 Msa1459760:CDS
TAAGAAGTTCTAAGATTGCA+AGG 0.514247 tig0040438:+7904 None:intergenic
TATTCATAATACTCGTGCTC+TGG 0.514478 tig0040438:+4492 None:intergenic
TTCGGAATGTTGCTCGGTGT+TGG 0.515145 tig0040438:-5001 Msa1459760:CDS
CAATCCATAGTGGGCAAGAA+GGG 0.516417 tig0040438:+8256 None:intergenic
ACTTATGCTGGAGGTTCAGT+TGG 0.516719 tig0040438:-8041 Msa1459760:CDS
CAAAGGTCCCTGTCTCTAGC+AGG 0.518536 tig0040438:+8203 None:intergenic
TATGCTGGAGGTTCAGTTGG+TGG 0.521919 tig0040438:-8038 Msa1459760:CDS
CGGATACGATGTGGCTTCAT+GGG 0.525525 tig0040438:+8290 None:intergenic
TGTTACTTGGGGCAACATGA+AGG 0.526854 tig0040438:+4451 None:intergenic
GTTGTAGCGTGTTCTATATG+TGG 0.527612 tig0040438:-5417 Msa1459760:intron
TGAATCTCAGCTCAATGATC+CGG 0.531268 tig0040438:-3413 Msa1459760:CDS
GAGTATAGGCCATCAAAGAC+AGG 0.531330 tig0040438:+8074 None:intergenic
CAGAGGAGGTCGCCAGAACT+GGG 0.533138 tig0040438:-6440 Msa1459760:CDS
GATATTGCTGTTAACTGGGC+TGG 0.533945 tig0040438:-7987 Msa1459760:CDS
GCAATCCATAGTGGGCAAGA+AGG 0.536235 tig0040438:+8255 None:intergenic
TGCTTTAATCTTTCAATTAG+GGG 0.539074 tig0040438:-5098 Msa1459760:CDS
CCCCTCTTGCTACTAGGTGG+TGG 0.539586 tig0040438:-5035 Msa1459760:CDS
ACACTGGAGAACAACTGCAC+CGG 0.541503 tig0040438:+5154 None:intergenic
CCTTTCCTGAAATTGAACAC+TGG 0.543136 tig0040438:+4347 None:intergenic
ACACCATTCGGAATGTTGCT+CGG 0.543584 tig0040438:-5007 Msa1459760:CDS
ATGATCCTGTTGTGTTTCAG+GGG 0.546511 tig0040438:+8136 None:intergenic
GCGTGATATTGGATATGGAA+AGG 0.546993 tig0040438:-5282 Msa1459760:CDS
GGATATTATCAAGTAAATGT+CGG 0.550643 tig0040438:+4412 None:intergenic
CTCTAGCAGGAAAAGGCTTG+TGG 0.551357 tig0040438:+8216 None:intergenic
CTTAATGTTCCACTTGATGA+CGG 0.553928 tig0040438:-5245 Msa1459760:CDS
AAGTTTGACAGAAAGAGTAT+AGG 0.555370 tig0040438:+8060 None:intergenic
AGATGGATATAGCAGAATCC+AGG 0.557654 tig0040438:-6490 Msa1459760:intron
CCAGTGTTCAATTTCAGGAA+AGG 0.561391 tig0040438:-4347 Msa1459760:CDS
CAACTCAAACGCTTTAACGT+TGG 0.566804 tig0040438:-8107 Msa1459760:CDS
TCATCAATGCCGTCATCAAG+TGG 0.566825 tig0040438:+5236 None:intergenic
ATTGATATCCACCATGGAGA+TGG 0.567849 tig0040438:-5392 Msa1459760:CDS
TCATGTTGCCCCAAGTAACA+TGG 0.568928 tig0040438:-4448 Msa1459760:CDS
TGGATTGCTTCAGCACATGC+AGG 0.569680 tig0040438:-8240 Msa1459760:CDS
CTTCCTCCACACCATCTCCA+TGG 0.571898 tig0040438:+5381 None:intergenic
CTCTTGCTACTAGGTGGTGG+CGG 0.573617 tig0040438:-5032 Msa1459760:CDS
GTTACTTGGGGCAACATGAA+GGG 0.581802 tig0040438:+4452 None:intergenic
ATGTGATATTGCTGTTAACT+GGG 0.581883 tig0040438:-7991 Msa1459760:CDS
GATTCTCAAGTAGCTTAGAT+CGG 0.588060 tig0040438:+4391 None:intergenic
TCCGTCTTCTGCACCTGATG+GGG 0.590771 tig0040438:-8378 Msa1459760:CDS
ATTGCTGTTAACTGGGCTGG+TGG 0.595034 tig0040438:-7984 Msa1459760:CDS
TGCTCGGTGTTGGTGCTATG+AGG 0.602036 tig0040438:-4991 Msa1459760:intron
ACCCCATCAGGTGCAGAAGA+CGG 0.603020 tig0040438:+8377 None:intergenic
ATGCTATTTCTATGATCCTG+AGG 0.612816 tig0040438:-8342 Msa1459760:CDS
TGTGCTGAAGCAATCCATAG+TGG 0.612825 tig0040438:+8246 None:intergenic
GTGCTGAAGCAATCCATAGT+GGG 0.613771 tig0040438:+8247 None:intergenic
ATAAAGAGTCTGCACCACAC+TGG 0.616250 tig0040438:+5138 None:intergenic
GTAATGGAAATCTTTAGGCC+CGG 0.623225 tig0040438:-5173 Msa1459760:CDS
TCCTGATTCTGATCTTGGAG+AGG 0.628534 tig0040438:-4322 Msa1459760:intron
CGCCACCACCTAGTAGCAAG+AGG 0.632522 tig0040438:+5033 None:intergenic
GTTCCCCTCTTGCTACTAGG+TGG 0.633802 tig0040438:-5038 Msa1459760:CDS
GCCACCACCTAGTAGCAAGA+GGG 0.635670 tig0040438:+5034 None:intergenic
AACAGAAGCAGGAAGAACAG+AGG 0.637098 tig0040438:-6457 Msa1459760:CDS
GTGGCTTCATGGGATGACCT+TGG 0.639461 tig0040438:+8300 None:intergenic
AGAAGCAGGAAGAACAGAGG+AGG 0.639684 tig0040438:-6454 Msa1459760:CDS
AGAACTTCTTAAACAGCACG+AGG 0.642387 tig0040438:-7892 Msa1459760:intron
CAAAAGATAAATACACACAC+CGG 0.646114 tig0040438:+3394 None:intergenic
TTGGGATCCAGATTCTGGCA+TGG 0.646557 tig0040438:-3570 Msa1459760:CDS
CAAGAAGGGCATGTGTCATG+CGG 0.648533 tig0040438:+8270 None:intergenic
CATCAGCATGAAAACGGCAA+AGG 0.654492 tig0040438:+8186 None:intergenic
ACACCGAGCAACATTCCGAA+TGG 0.663792 tig0040438:+5004 None:intergenic
TATCCACCATGGAGATGGTG+TGG 0.668224 tig0040438:-5387 Msa1459760:CDS
CCACCATGGAGATGGTGTGG+AGG 0.672038 tig0040438:-5384 Msa1459760:CDS
CCACCACCTAGTAGCAAGAG+GGG 0.675201 tig0040438:+5035 None:intergenic
GCATGGACATTGATGTTGAA+CGG 0.679554 tig0040438:-3553 Msa1459760:intron
GTGGACATTGATATCCACCA+TGG 0.680210 tig0040438:-5398 Msa1459760:CDS
CCTCCACACCATCTCCATGG+TGG 0.680490 tig0040438:+5384 None:intergenic
GCTTCACACATGGATGTCAG+TGG 0.682917 tig0040438:-8410 None:intergenic
GCATCATGCCAAGAAGTGTG+AGG 0.688961 tig0040438:-7958 Msa1459760:CDS
GGTGCAGTTGTTCTCCAGTG+TGG 0.689736 tig0040438:-5152 Msa1459760:CDS
TGTGTCATGCGGATACGATG+TGG 0.693446 tig0040438:+8281 None:intergenic
TCTCCAAGATCAGAATCAGG+AGG 0.695400 tig0040438:+4324 None:intergenic
AGGAGGTCGCCAGAACTGGG+TGG 0.742881 tig0040438:-6437 Msa1459760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+CGG + tig0040438:5554-5573 None:intergenic 0.0%
!!! TGTTCAAAAATAATTTTATA+GGG + tig0040438:7730-7749 None:intergenic 10.0%
!!! AATTTTTCTTCATACTTTAA+AGG - tig0040438:3955-3974 Msa1459760:intron 15.0%
!! ATAAGTTATAACTATAAGTT+TGG - tig0040438:4558-4577 Msa1459760:intron 15.0%
!!! TGAATTTATAATATTTTTGG+TGG - tig0040438:5579-5598 Msa1459760:intron 15.0%
!! AGTAGATATAAAATAATTAG+AGG - tig0040438:5987-6006 Msa1459760:intron 15.0%
!!! GTGTTCAAAAATAATTTTAT+AGG + tig0040438:7731-7750 None:intergenic 15.0%
!!! TACTTTAAAGGTATATTTTG+TGG - tig0040438:3967-3986 Msa1459760:intron 20.0%
!!! TTTTCTTTAGAACTGATTTA+TGG - tig0040438:4016-4035 Msa1459760:intron 20.0%
!!! AAGTACTGAAGTTAATATTT+AGG - tig0040438:4040-4059 Msa1459760:intron 20.0%
!!! ATATTTTACAACACTAATGT+TGG - tig0040438:4275-4294 Msa1459760:intron 20.0%
!! TTAAAGAATACATATCAGAA+AGG + tig0040438:4604-4623 None:intergenic 20.0%
!! TATTCTTTAAATCTCACATA+GGG - tig0040438:4614-4633 Msa1459760:intron 20.0%
!! ACTAAATACTAACATTATTC+TGG + tig0040438:4691-4710 None:intergenic 20.0%
!! GAATAATGTTAGTATTTAGT+TGG - tig0040438:4691-4710 Msa1459760:intron 20.0%
!! CAAATATTTGTACATTAATG+TGG - tig0040438:4769-4788 Msa1459760:intron 20.0%
!!! ATATATGTCAGATTTTTTAC+TGG + tig0040438:4957-4976 None:intergenic 20.0%
!! AACAATTAAAACTCAATTGA+TGG - tig0040438:5087-5106 Msa1459760:CDS 20.0%
!!! TATCATTTTGTTGTTATTTG+AGG + tig0040438:5171-5190 None:intergenic 20.0%
!! TTAAAGAAAACATACTTTGA+CGG - tig0040438:5769-5788 Msa1459760:intron 20.0%
!! TGTATTGAAACTAAATAGTT+TGG + tig0040438:5814-5833 None:intergenic 20.0%
!! ACTGTTTCAAAAAGAAATAA+TGG - tig0040438:5885-5904 Msa1459760:intron 20.0%
!! TATATCTACTAAATATGAGT+AGG + tig0040438:5977-5996 None:intergenic 20.0%
!! TTATCGTGTTAATTATACAA+TGG - tig0040438:6019-6038 Msa1459760:intron 20.0%
!!! ATTGCATAGTTTAGTTTATA+TGG - tig0040438:6084-6103 Msa1459760:intron 20.0%
!!! TTGCATAGTTTAGTTTATAT+GGG - tig0040438:6085-6104 Msa1459760:intron 20.0%
!!! TATTGTTTCTGAATATTTCA+GGG + tig0040438:6232-6251 None:intergenic 20.0%
!! GAAAATAATCACCAAATTTA+TGG + tig0040438:6476-6495 None:intergenic 20.0%
!! ATGCTTTAATCTTTCAATTA+GGG - tig0040438:6695-6714 Msa1459760:intron 20.0%
!! AGTGATATTACATCAAATAA+AGG + tig0040438:6844-6863 None:intergenic 20.0%
!! GATGTAATATCACTAATATA+AGG - tig0040438:6850-6869 Msa1459760:intron 20.0%
!!! GTAGCTTGATTTTATTTATA+AGG - tig0040438:6872-6891 Msa1459760:intron 20.0%
!!! TATAATTCAACTAGATGTTT+TGG + tig0040438:6922-6941 None:intergenic 20.0%
!!! CCAATAAAATTTTATGTACT+TGG + tig0040438:7227-7246 None:intergenic 20.0%
!!! CCAAGTACATAAAATTTTAT+TGG - tig0040438:7224-7243 Msa1459760:intron 20.0%
!!! ATTTTATTGGCTATTTGTTA+AGG - tig0040438:7237-7256 Msa1459760:intron 20.0%
!! TTATACAAGTATTTGAAAAC+AGG - tig0040438:7643-7662 Msa1459760:intron 20.0%
!! TTAATTTCACTTGTATTACT+TGG + tig0040438:7672-7691 None:intergenic 20.0%
!!! TCAGTTCTTCTATTTAATTT+TGG + tig0040438:8079-8098 None:intergenic 20.0%
!! AATTAAATAGAAGAACTGAA+TGG - tig0040438:8080-8099 Msa1459760:CDS 20.0%
! TGAAGAAAAATTAAAGCAGA+GGG + tig0040438:3947-3966 None:intergenic 25.0%
! ATGAAGAAAAATTAAAGCAG+AGG + tig0040438:3948-3967 None:intergenic 25.0%
! TCTAACAGAAAATAAGATCA+AGG + tig0040438:4118-4137 None:intergenic 25.0%
!! GTTGTAAAATATACTGACTA+TGG + tig0040438:4267-4286 None:intergenic 25.0%
!!! ACTTTTATTTAGATGTACTG+AGG + tig0040438:4352-4371 None:intergenic 25.0%
! CAGTTTAGTGTTCAATTTAA+AGG - tig0040438:4404-4423 Msa1459760:CDS 25.0%
! TTCTATAGTATTTGACAACA+TGG - tig0040438:4442-4461 Msa1459760:CDS 25.0%
! GTATTCTTTAAATCTCACAT+AGG - tig0040438:4613-4632 Msa1459760:intron 25.0%
! ATTCTTTAAATCTCACATAG+GGG - tig0040438:4615-4634 Msa1459760:intron 25.0%
! ATGTTAGTATTTAGTTGGTT+TGG - tig0040438:4696-4715 Msa1459760:intron 25.0%
! TTAACTCTAACAGTTCAAAT+TGG + tig0040438:4728-4747 None:intergenic 25.0%
! TTTGAACTGTTAGAGTTAAT+CGG - tig0040438:4729-4748 Msa1459760:intron 25.0%
!!! TATTTGAGTTGAGAAACAAA+TGG + tig0040438:4755-4774 None:intergenic 25.0%
! ATATTTGTACATTAATGTGG+TGG - tig0040438:4772-4791 Msa1459760:intron 25.0%
!! CAATAAAATTTTGTTCTCCT+AGG - tig0040438:4845-4864 Msa1459760:intron 25.0%
! AGAATGAAAAATAGACAGTA+AGG - tig0040438:5233-5252 Msa1459760:CDS 25.0%
! AACAAAATTAGAGAATGAGA+TGG - tig0040438:5287-5306 Msa1459760:CDS 25.0%
! AAAAAAAAAAAAACGGAACC+TGG + tig0040438:5547-5566 None:intergenic 25.0%
! ACAAAATCGTAGTATTCAAA+TGG + tig0040438:5915-5934 None:intergenic 25.0%
!!! GTATTGTTTCTGAATATTTC+AGG + tig0040438:6233-6252 None:intergenic 25.0%
! AAATATTCAGAAACAATACG+AGG - tig0040438:6234-6253 Msa1459760:intron 25.0%
! AATATTCAGAAACAATACGA+GGG - tig0040438:6235-6254 Msa1459760:intron 25.0%
!! TAAACTGTAGAAAGTTTGTT+TGG - tig0040438:6260-6279 Msa1459760:intron 25.0%
!! ACTGTTTCTTTCCATAAATT+TGG - tig0040438:6462-6481 Msa1459760:CDS 25.0%
!!! AAATTTGGTGATTATTTTCC+TGG - tig0040438:6477-6496 Msa1459760:CDS 25.0%
!! TTGTTGTTCAAACCTTTAAT+CGG - tig0040438:6594-6613 Msa1459760:intron 25.0%
! GATGCTTTAATCTTTCAATT+AGG - tig0040438:6694-6713 Msa1459760:intron 25.0%
! TGCTTTAATCTTTCAATTAG+GGG - tig0040438:6696-6715 Msa1459760:intron 25.0%
! CACGAGTATTATGAATATTT+CGG - tig0040438:7308-7327 Msa1459760:intron 25.0%
!!! TTTTGTTTTCCATGTTACTT+GGG + tig0040438:7358-7377 None:intergenic 25.0%
!!! TTTTTGTTTTCCATGTTACT+TGG + tig0040438:7359-7378 None:intergenic 25.0%
! GATATTATCAAGTAAATGTC+GGG + tig0040438:7384-7403 None:intergenic 25.0%
! GGATATTATCAAGTAAATGT+CGG + tig0040438:7385-7404 None:intergenic 25.0%
!!! AGAAAGTATTTGCACAAAAT+AGG + tig0040438:7569-7588 None:intergenic 25.0%
!!! ACAGAAGTTATTTTGTAAAC+AGG + tig0040438:7611-7630 None:intergenic 25.0%
!!! TTTTTTGAATCCCTATATGT+GGG + tig0040438:7777-7796 None:intergenic 25.0%
! TTCATCCTAGAATATATGAT+AGG - tig0040438:8051-8070 Msa1459760:CDS 25.0%
TAATAATAATTCCCAACCTC+AGG + tig0040438:3471-3490 None:intergenic 30.0%
GAGGTTGGGAATTATTATTA+TGG - tig0040438:3471-3490 Msa1459760:intron 30.0%
CATAATCATCAGCATGAAAA+CGG + tig0040438:3617-3636 None:intergenic 30.0%
! AAGTTTGACAGAAAGAGTAT+AGG + tig0040438:3737-3756 None:intergenic 30.0%
! AATGTGATATTGCTGTTAAC+TGG - tig0040438:3802-3821 Msa1459760:intron 30.0%
! ATGTGATATTGCTGTTAACT+GGG - tig0040438:3803-3822 Msa1459760:intron 30.0%
!! TAAGAAGTTCTAAGATTGCA+AGG + tig0040438:3893-3912 None:intergenic 30.0%
! GTATATTTTGTGGAATCGAT+TGG - tig0040438:3977-3996 Msa1459760:intron 30.0%
! TATTTTCTGTTAGATCCTTC+TGG - tig0040438:4124-4143 Msa1459760:intron 30.0%
! ACATTTCTTTTCTCCTAACA+AGG - tig0040438:4314-4333 Msa1459760:intron 30.0%
! ACACTAAACTGACTAGTTAA+CGG + tig0040438:4395-4414 None:intergenic 30.0%
TACATATCAGAAAGGACATA+CGG + tig0040438:4596-4615 None:intergenic 30.0%
AGAGAAAACTGTAGTATAAC+TGG + tig0040438:4807-4826 None:intergenic 30.0%
ATATTATGGAAGACTATCCT+AGG + tig0040438:4865-4884 None:intergenic 30.0%
TCATTGCAGCACATATATTA+TGG + tig0040438:4879-4898 None:intergenic 30.0%
! ATTCTTTTCTGCAGTTCTTT+TGG + tig0040438:5045-5064 None:intergenic 30.0%
!!! CTTCTGTTTTTTTTATCTCC+TGG + tig0040438:5325-5344 None:intergenic 30.0%
GAGATAAAAAAAACAGAAGC+AGG - tig0040438:5326-5345 Msa1459760:CDS 30.0%
AACAGTATGATACCAAATTG+AGG + tig0040438:5871-5890 None:intergenic 30.0%
! ACAAACCTCAAAATGGTTTT+TGG + tig0040438:6123-6142 None:intergenic 30.0%
!!! AACCATTTTGAGGTTTGTTA+TGG - tig0040438:6125-6144 Msa1459760:intron 30.0%
ATCCATAACAAACCTCAAAA+TGG + tig0040438:6130-6149 None:intergenic 30.0%
ATATGAGCATAATCATCAAG+CGG + tig0040438:6185-6204 None:intergenic 30.0%
! GCAAAGTAATGGAAATCTTT+AGG - tig0040438:6616-6635 Msa1459760:intron 30.0%
TCATTATGTAAAACAAGCGA+TGG - tig0040438:7009-7028 Msa1459760:intron 30.0%
TATAGTTCGAGACTAGTATA+AGG + tig0040438:7068-7087 None:intergenic 30.0%
!! TTTGTTTTCCATGTTACTTG+GGG + tig0040438:7357-7376 None:intergenic 30.0%
ATGCGTGAAATAAAGATAAC+GGG + tig0040438:7521-7540 None:intergenic 30.0%
CATGCGTGAAATAAAGATAA+CGG + tig0040438:7522-7541 None:intergenic 30.0%
!!! CTTTTTTGAATCCCTATATG+TGG + tig0040438:7778-7797 None:intergenic 30.0%
ACACATCATTAACTATCCTT+TGG - tig0040438:8018-8037 Msa1459760:CDS 30.0%
!! CATATATTCTAGGATGAAGA+AGG + tig0040438:8049-8068 None:intergenic 30.0%
AAAATAGCTAGGACAAGTTA+GGG + tig0040438:8123-8142 None:intergenic 30.0%
AAAAATAGCTAGGACAAGTT+AGG + tig0040438:8124-8143 None:intergenic 30.0%
CAAAAGATAAATACACACAC+CGG + tig0040438:8403-8422 None:intergenic 30.0%
!! ATGCTATTTCTATGATCCTG+AGG - tig0040438:3452-3471 Msa1459760:CDS 35.0%
! TATTTCTATGATCCTGAGGT+TGG - tig0040438:3456-3475 Msa1459760:intron 35.0%
ATTTCTATGATCCTGAGGTT+GGG - tig0040438:3457-3476 Msa1459760:intron 35.0%
GGGAATTATTATTATGGCCA+AGG - tig0040438:3477-3496 Msa1459760:intron 35.0%
TATGATCCTGTTGTGTTTCA+GGG + tig0040438:3662-3681 None:intergenic 35.0%
ATATGATCCTGTTGTGTTTC+AGG + tig0040438:3663-3682 None:intergenic 35.0%
TCTTTCTGTCAAACTTATGC+TGG - tig0040438:3741-3760 Msa1459760:intron 35.0%
TTACAACACTAATGTTGGTC+AGG - tig0040438:4280-4299 Msa1459760:intron 35.0%
GTTAGGAGAAAAGAAATGTG+TGG + tig0040438:4313-4332 None:intergenic 35.0%
TTAAATCTCACATAGGGGTT+AGG - tig0040438:4620-4639 Msa1459760:intron 35.0%
! GTTCTAAGCAATCATGTCAA+TGG - tig0040438:4911-4930 Msa1459760:intron 35.0%
! TGGTGATGAGGTTATGATAT+AGG + tig0040438:5136-5155 None:intergenic 35.0%
AAAAATAGACAGTAAGGCAG+AGG - tig0040438:5239-5258 Msa1459760:CDS 35.0%
!! TTTGGTGGATATTTTTGCCA+TGG - tig0040438:5594-5613 Msa1459760:intron 35.0%
GTTTCAATACATGCTTCTGT+TGG - tig0040438:5823-5842 Msa1459760:intron 35.0%
! AATTGAGGCAGCACTTTTAA+TGG + tig0040438:5856-5875 None:intergenic 35.0%
!! TTAAAAGTGCTGCCTCAATT+TGG - tig0040438:5856-5875 Msa1459760:intron 35.0%
! ACAAGCCAAAAACCATTTTG+AGG - tig0040438:6115-6134 Msa1459760:intron 35.0%
ATCGAAAAATTCCTCGACTA+TGG - tig0040438:6148-6167 Msa1459760:intron 35.0%
CGTGATATTGGATATGGAAA+GGG - tig0040438:6513-6532 Msa1459760:intron 35.0%
CTTAATGTTCCACTTGATGA+CGG - tig0040438:6549-6568 Msa1459760:intron 35.0%
ACCTTTAATCGGCAAAGTAA+TGG - tig0040438:6605-6624 Msa1459760:intron 35.0%
! TCCATTACTTTGCCGATTAA+AGG + tig0040438:6609-6628 None:intergenic 35.0%
TATTCATAATACTCGTGCTC+TGG + tig0040438:7305-7324 None:intergenic 35.0%
GATTCTCAAGTAGCTTAGAT+CGG + tig0040438:7406-7425 None:intergenic 35.0%
CTTTCCTGAAATTGAACACT+GGG + tig0040438:7449-7468 None:intergenic 35.0%
TGCGTGAAATAAAGATAACG+GGG + tig0040438:7520-7539 None:intergenic 35.0%
TTTGAACACACTGATGCATA+AGG - tig0040438:7742-7761 Msa1459760:intron 35.0%
ACTGTATTATCCCATGCAAA+AGG - tig0040438:7811-7830 Msa1459760:intron 35.0%
! AGAAGTGGGGTATTCTATTA+AGG + tig0040438:7982-8001 None:intergenic 35.0%
AGTAGTGTAGTAGAAGAAGT+GGG + tig0040438:7996-8015 None:intergenic 35.0%
!! TATTCTAGGATGAAGAAGGT+GGG + tig0040438:8045-8064 None:intergenic 35.0%
!! ATATTCTAGGATGAAGAAGG+TGG + tig0040438:8046-8065 None:intergenic 35.0%
TGGCTCCTATCATATATTCT+AGG + tig0040438:8059-8078 None:intergenic 35.0%
GAAGAGAGTCAAAAATAGCT+AGG + tig0040438:8134-8153 None:intergenic 35.0%
AATAGGGAATGAGTTCAAAC+AGG + tig0040438:8159-8178 None:intergenic 35.0%
TTCCTGGAGAATTGTGAATA+GGG + tig0040438:8175-8194 None:intergenic 35.0%
ATTCCTGGAGAATTGTGAAT+AGG + tig0040438:8176-8195 None:intergenic 35.0%
ATGAAGATAGAGATGAGCAT+TGG - tig0040438:8205-8224 Msa1459760:CDS 35.0%
TGAAGATAGAGATGAGCATT+GGG - tig0040438:8206-8225 Msa1459760:CDS 35.0%
ATCGCTGATAAATGAGGTAA+AGG + tig0040438:8329-8348 None:intergenic 35.0%
GAGAATATCGCTGATAAATG+AGG + tig0040438:8335-8354 None:intergenic 35.0%
TTTCTCTCTTGACTTTGCTT+TGG + tig0040438:8357-8376 None:intergenic 35.0%
! ACTTTTCTCTTTACCCCATC+AGG + tig0040438:3432-3451 None:intergenic 40.0%
ATGATCCTGTTGTGTTTCAG+GGG + tig0040438:3661-3680 None:intergenic 40.0%
CAACTCAAACGCTTTAACGT+TGG - tig0040438:3687-3706 Msa1459760:intron 40.0%
GAAGATTGTCCTGTCTTTGA+TGG - tig0040438:3711-3730 Msa1459760:intron 40.0%
TTCTGTCAAACTTATGCTGG+AGG - tig0040438:3744-3763 Msa1459760:intron 40.0%
AGAACTTCTTAAACAGCACG+AGG - tig0040438:3902-3921 Msa1459760:intron 40.0%
TTAAAGCAGAGGGAATTCCA+CGG + tig0040438:3937-3956 None:intergenic 40.0%
AGACTTGCATGCTATATACG+AGG - tig0040438:4074-4093 Msa1459760:intron 40.0%
! CTTCTGGAAACTCATTCACA+GGG - tig0040438:4140-4159 Msa1459760:intron 40.0%
! GAAGACATAAGTGCCTTGTT+AGG + tig0040438:4330-4349 None:intergenic 40.0%
! ACTGACTAGTTAACGGACAA+TGG + tig0040438:4388-4407 None:intergenic 40.0%
! TTTCTAGGAGAATGTTCAGC+TGG - tig0040438:4477-4496 Msa1459760:CDS 40.0%
! TTCTAGGAGAATGTTCAGCT+GGG - tig0040438:4478-4497 Msa1459760:CDS 40.0%
! GTCATGCACAAAGCATCAAT+AGG + tig0040438:4669-4688 None:intergenic 40.0%
!! CAGTTTTCTCTTGTTTGCTC+TGG - tig0040438:4816-4835 Msa1459760:intron 40.0%
CTAAGCAATCATGTCAATGG+TGG - tig0040438:4914-4933 Msa1459760:intron 40.0%
TCATAACCTCATCACCATCA+AGG - tig0040438:5139-5158 Msa1459760:CDS 40.0%
! ATTTGAGGTCTTGACCTTGA+TGG + tig0040438:5156-5175 None:intergenic 40.0%
AGATGGATATAGCAGAATCC+AGG - tig0040438:5304-5323 Msa1459760:CDS 40.0%
TCGTTTCTATCTCTAGTGAC+TGG + tig0040438:5408-5427 None:intergenic 40.0%
GATGCTGCAACTTTCTTCTA+GGG - tig0040438:5492-5511 Msa1459760:intron 40.0%
!!! TCTTCTAGGGTTTTCCATCA+CGG - tig0040438:5505-5524 Msa1459760:intron 40.0%
TTGTAATTTCCACCGTAGAG+TGG + tig0040438:5690-5709 None:intergenic 40.0%
TACGGTGGAAATTACAACAC+TGG - tig0040438:5693-5712 Msa1459760:intron 40.0%
!! ACAACACTGGTTCTATGTGT+AGG - tig0040438:5706-5725 Msa1459760:intron 40.0%
!! TTACCTACTGCTTTAAGAGC+AGG + tig0040438:6059-6078 None:intergenic 40.0%
AAATTCCTCGACTATGGCAT+AGG - tig0040438:6154-6173 Msa1459760:intron 40.0%
TAAAACCTATGCCATAGTCG+AGG + tig0040438:6162-6181 None:intergenic 40.0%
! CTGTAGAAAGTTTGTTTGGC+AGG - tig0040438:6264-6283 Msa1459760:intron 40.0%
GTTGTAGCGTGTTCTATATG+TGG - tig0040438:6377-6396 Msa1459760:CDS 40.0%
ATTGATATCCACCATGGAGA+TGG - tig0040438:6402-6421 Msa1459760:CDS 40.0%
! GGTGATTATTTTCCTGGTAC+TGG - tig0040438:6483-6502 Msa1459760:intron 40.0%
GACTTGCGTGATATTGGATA+TGG - tig0040438:6507-6526 Msa1459760:intron 40.0%
GCGTGATATTGGATATGGAA+AGG - tig0040438:6512-6531 Msa1459760:intron 40.0%
! GTAATGGAAATCTTTAGGCC+CGG - tig0040438:6621-6640 Msa1459760:intron 40.0%
TCTTTATCTGGAGACAGGTT+GGG - tig0040438:6672-6691 Msa1459760:intron 40.0%
ATGTCACATTGCATTCTGAG+AGG + tig0040438:7117-7136 None:intergenic 40.0%
! TGGCTATTTGTTAAGGCAGA+CGG - tig0040438:7244-7263 Msa1459760:intron 40.0%
! GCAACATGAAGGGTATAATC+TGG + tig0040438:7335-7354 None:intergenic 40.0%
CCTTTCCTGAAATTGAACAC+TGG + tig0040438:7450-7469 None:intergenic 40.0%
CCAGTGTTCAATTTCAGGAA+AGG - tig0040438:7447-7466 Msa1459760:intron 40.0%
AATCCCTATATGTGGGTAGT+GGG + tig0040438:7770-7789 None:intergenic 40.0%
!! TCAAGTTGCTCCTTTTGCAT+GGG + tig0040438:7824-7843 None:intergenic 40.0%
!!! TTCAAGTTGCTCCTTTTGCA+TGG + tig0040438:7825-7844 None:intergenic 40.0%
GAGCAACTTGAATACTTCAC+AGG - tig0040438:7833-7852 Msa1459760:intron 40.0%
GTGTCAATAGTCCTATACTC+AGG - tig0040438:7904-7923 Msa1459760:CDS 40.0%
GGGGAATTTAAGAGTAAGGA+AGG + tig0040438:7958-7977 None:intergenic 40.0%
AGGAGGGGAATTTAAGAGTA+AGG + tig0040438:7962-7981 None:intergenic 40.0%
! TGGGGTATTCTATTAAGGAG+GGG + tig0040438:7977-7996 None:intergenic 40.0%
! GTGGGGTATTCTATTAAGGA+GGG + tig0040438:7978-7997 None:intergenic 40.0%
! AGTGGGGTATTCTATTAAGG+AGG + tig0040438:7979-7998 None:intergenic 40.0%
GTAGTGTAGTAGAAGAAGTG+GGG + tig0040438:7995-8014 None:intergenic 40.0%
CAGTAGTGTAGTAGAAGAAG+TGG + tig0040438:7997-8016 None:intergenic 40.0%
CACTTCTTCTACTACACTAC+TGG - tig0040438:7995-8014 Msa1459760:CDS 40.0%
!! ATTCTAGGATGAAGAAGGTG+GGG + tig0040438:8044-8063 None:intergenic 40.0%
TTCCCTATTCACAATTCTCC+AGG - tig0040438:8170-8189 Msa1459760:CDS 40.0%
CTTCATGATCGTCAAATTCC+TGG + tig0040438:8191-8210 None:intergenic 40.0%
GCATGGACATTGATGTTGAA+CGG - tig0040438:8241-8260 Msa1459760:CDS 40.0%
TGAATCTCAGCTCAATGATC+CGG - tig0040438:8381-8400 Msa1459760:CDS 40.0%
!! CAATCCATAGTGGGCAAGAA+GGG + tig0040438:3541-3560 None:intergenic 45.0%
GTGCTGAAGCAATCCATAGT+GGG + tig0040438:3550-3569 None:intergenic 45.0%
TGTGCTGAAGCAATCCATAG+TGG + tig0040438:3551-3570 None:intergenic 45.0%
CATCAGCATGAAAACGGCAA+AGG + tig0040438:3611-3630 None:intergenic 45.0%
CATAACCCCTGAAACACAAC+AGG - tig0040438:3653-3672 Msa1459760:intron 45.0%
GAGTATAGGCCATCAAAGAC+AGG + tig0040438:3723-3742 None:intergenic 45.0%
ACTTATGCTGGAGGTTCAGT+TGG - tig0040438:3753-3772 Msa1459760:intron 45.0%
! GATATTGCTGTTAACTGGGC+TGG - tig0040438:3807-3826 Msa1459760:intron 45.0%
CCTGTGAATGAGTTTCCAGA+AGG + tig0040438:4142-4161 None:intergenic 45.0%
! CCTTCTGGAAACTCATTCAC+AGG - tig0040438:4139-4158 Msa1459760:intron 45.0%
GAGAATGTTCAGCTGGGTAA+AGG - tig0040438:4484-4503 Msa1459760:CDS 45.0%
! GCAATCATGTCAATGGTGGA+TGG - tig0040438:4918-4937 Msa1459760:intron 45.0%
!! CAATGGTGGATGGTGCAATA+TGG - tig0040438:4928-4947 Msa1459760:intron 45.0%
TATCATGTGCGACAGCAATG+CGG - tig0040438:4974-4993 Msa1459760:intron 45.0%
!! TCTTGACCTTGATGGTGATG+AGG + tig0040438:5148-5167 None:intergenic 45.0%
AGTAAGGCAGAGGCGAAAAA+AGG - tig0040438:5249-5268 Msa1459760:CDS 45.0%
GTAAGGCAGAGGCGAAAAAA+GGG - tig0040438:5250-5269 Msa1459760:CDS 45.0%
GCGAAAAAAGGGACTGAAGA+AGG - tig0040438:5261-5280 Msa1459760:CDS 45.0%
AACAGAAGCAGGAAGAACAG+AGG - tig0040438:5337-5356 Msa1459760:CDS 45.0%
! GTGACTGGCTGTCTGTATTA+TGG + tig0040438:5393-5412 None:intergenic 45.0%
CGATGCTGCAACTTTCTTCT+AGG - tig0040438:5491-5510 Msa1459760:intron 45.0%
!!! CTTCTAGGGTTTTCCATCAC+GGG - tig0040438:5506-5525 Msa1459760:intron 45.0%
ATGAAAAGTTAGGCCCGTGA+TGG + tig0040438:5522-5541 None:intergenic 45.0%
! ATCACGGGCCTAACTTTTCA+TGG - tig0040438:5521-5540 Msa1459760:intron 45.0%
GAACCTGGCCATGAAAAGTT+AGG + tig0040438:5532-5551 None:intergenic 45.0%
ATGAAGAACCCTCCACTCTA+CGG - tig0040438:5675-5694 Msa1459760:intron 45.0%
AATTTCCACCGTAGAGTGGA+GGG + tig0040438:5686-5705 None:intergenic 45.0%
TAATTTCCACCGTAGAGTGG+AGG + tig0040438:5687-5706 None:intergenic 45.0%
AAGCCTGCTCTTAAAGCAGT+AGG - tig0040438:6053-6072 Msa1459760:intron 45.0%
GTGGACATTGATATCCACCA+TGG - tig0040438:6396-6415 Msa1459760:CDS 45.0%
TCATCAATGCCGTCATCAAG+TGG + tig0040438:6561-6580 None:intergenic 45.0%
ATAAAGAGTCTGCACCACAC+TGG + tig0040438:6659-6678 None:intergenic 45.0%
TGTGGTGCAGACTCTTTATC+TGG - tig0040438:6660-6679 Msa1459760:intron 45.0%
CAGACTCTTTATCTGGAGAC+AGG - tig0040438:6667-6686 Msa1459760:intron 45.0%
CTCTTTATCTGGAGACAGGT+TGG - tig0040438:6671-6690 Msa1459760:intron 45.0%
AATGTTCCCCTCTTGCTACT+AGG - tig0040438:6753-6772 Msa1459760:intron 45.0%
ACACCATTCGGAATGTTGCT+CGG - tig0040438:6787-6806 Msa1459760:intron 45.0%
!!! ATGTTTTGGCACTCTGACAG+AGG + tig0040438:6908-6927 None:intergenic 45.0%
! GGCTATTTGTTAAGGCAGAC+GGG - tig0040438:7245-7264 Msa1459760:intron 45.0%
GTTACTTGGGGCAACATGAA+GGG + tig0040438:7345-7364 None:intergenic 45.0%
! TGTTACTTGGGGCAACATGA+AGG + tig0040438:7346-7365 None:intergenic 45.0%
TCATGTTGCCCCAAGTAACA+TGG - tig0040438:7346-7365 Msa1459760:intron 45.0%
TGCTCCCAGTGTTCAATTTC+AGG - tig0040438:7442-7461 Msa1459760:intron 45.0%
TCTCCAAGATCAGAATCAGG+AGG + tig0040438:7473-7492 None:intergenic 45.0%
TCCTGATTCTGATCTTGGAG+AGG - tig0040438:7472-7491 Msa1459760:intron 45.0%
ACCTCTCCAAGATCAGAATC+AGG + tig0040438:7476-7495 None:intergenic 45.0%
GTACCCACTACCCACATATA+GGG - tig0040438:7764-7783 Msa1459760:intron 45.0%
GAATCCCTATATGTGGGTAG+TGG + tig0040438:7771-7790 None:intergenic 45.0%
ATCGCATTGCACCTGAGTAT+AGG + tig0040438:7918-7937 None:intergenic 45.0%
TCAATGTCCATGCCAGAATC+TGG + tig0040438:8234-8253 None:intergenic 45.0%
!!! TTTTGAATTTATAATATTTT+TGG - tig0040438:5576-5595 Msa1459760:intron 5.0%
TTCCGTCTTCTGCACCTGAT+GGG - tig0040438:3415-3434 Msa1459760:CDS 50.0%
CGGATACGATGTGGCTTCAT+GGG + tig0040438:3507-3526 None:intergenic 50.0%
TGTGTCATGCGGATACGATG+TGG + tig0040438:3516-3535 None:intergenic 50.0%
! CAAGAAGGGCATGTGTCATG+CGG + tig0040438:3527-3546 None:intergenic 50.0%
!! GCAATCCATAGTGGGCAAGA+AGG + tig0040438:3542-3561 None:intergenic 50.0%
TGGATTGCTTCAGCACATGC+AGG - tig0040438:3554-3573 Msa1459760:CDS 50.0%
CTCTAGCAGGAAAAGGCTTG+TGG + tig0040438:3581-3600 None:intergenic 50.0%
! AGCCTTTTCCTGCTAGAGAC+AGG - tig0040438:3583-3602 Msa1459760:CDS 50.0%
! GCCTTTTCCTGCTAGAGACA+GGG - tig0040438:3584-3603 Msa1459760:CDS 50.0%
TCCCTGTCTCTAGCAGGAAA+AGG + tig0040438:3588-3607 None:intergenic 50.0%
TATGCTGGAGGTTCAGTTGG+TGG - tig0040438:3756-3775 Msa1459760:intron 50.0%
! ATTGCTGTTAACTGGGCTGG+TGG - tig0040438:3810-3829 Msa1459760:intron 50.0%
! GCATCATGCCAAGAAGTGTG+AGG - tig0040438:3836-3855 Msa1459760:intron 50.0%
TCCAGAAGCCTCACACTTCT+TGG + tig0040438:3847-3866 None:intergenic 50.0%
TGACAACATGGCACGCTTTC+TGG - tig0040438:4454-4473 Msa1459760:CDS 50.0%
!! TGGCACGCTTTCTGGTTTCT+AGG - tig0040438:4462-4481 Msa1459760:CDS 50.0%
ATGCGGCTATGAAGGAAGCA+TGG - tig0040438:4991-5010 Msa1459760:intron 50.0%
AGAAGCAGGAAGAACAGAGG+AGG - tig0040438:5340-5359 Msa1459760:CDS 50.0%
ATACAGCAACCACCCAGTTC+TGG + tig0040438:5369-5388 None:intergenic 50.0%
CATAGCAGCCACCATTCACT+GGG + tig0040438:5648-5667 None:intergenic 50.0%
AGTGGAGGGTTCTTCATGGA+GGG + tig0040438:5672-5691 None:intergenic 50.0%
GTAGAGTGGAGGGTTCTTCA+TGG + tig0040438:5676-5695 None:intergenic 50.0%
AGTACTGCAGTCGCAGATGT+TGG + tig0040438:5953-5972 None:intergenic 50.0%
TATCCACCATGGAGATGGTG+TGG - tig0040438:6407-6426 Msa1459760:CDS 50.0%
ACTGGCGACTTGCGTGATAT+TGG - tig0040438:6501-6520 Msa1459760:intron 50.0%
ACACTGGAGAACAACTGCAC+CGG + tig0040438:6643-6662 None:intergenic 50.0%
ACACCGAGCAACATTCCGAA+TGG + tig0040438:6793-6812 None:intergenic 50.0%
!! TTCGGAATGTTGCTCGGTGT+TGG - tig0040438:6793-6812 Msa1459760:intron 50.0%
AGGCCTCCTGATTCTGATCT+TGG - tig0040438:7467-7486 Msa1459760:intron 50.0%
GGTACCCACTACCCACATAT+AGG - tig0040438:7763-7782 Msa1459760:intron 50.0%
!! GAGCATTGGGATCCAGATTC+TGG - tig0040438:8219-8238 Msa1459760:CDS 50.0%
TTGGGATCCAGATTCTGGCA+TGG - tig0040438:8224-8243 Msa1459760:CDS 50.0%
CTTCCGTCTTCTGCACCTGA+TGG - tig0040438:3414-3433 Msa1459760:CDS 55.0%
TCCGTCTTCTGCACCTGATG+GGG - tig0040438:3416-3435 Msa1459760:CDS 55.0%
ACCCCATCAGGTGCAGAAGA+CGG + tig0040438:3420-3439 None:intergenic 55.0%
GTGGCTTCATGGGATGACCT+TGG + tig0040438:3497-3516 None:intergenic 55.0%
GCGGATACGATGTGGCTTCA+TGG + tig0040438:3508-3527 None:intergenic 55.0%
CATGCCCTTCTTGCCCACTA+TGG - tig0040438:3534-3553 Msa1459760:intron 55.0%
CAAAGGTCCCTGTCTCTAGC+AGG + tig0040438:3594-3613 None:intergenic 55.0%
! GCCAAGAAGTGTGAGGCTTC+TGG - tig0040438:3843-3862 Msa1459760:intron 55.0%
CGACAGCAATGCGGCTATGA+AGG - tig0040438:4983-5002 Msa1459760:intron 55.0%
! CGGCTATGAAGGAAGCATGG+TGG - tig0040438:4994-5013 Msa1459760:CDS 55.0%
! GGGCCTAACTTTTCATGGCC+AGG - tig0040438:5526-5545 Msa1459760:intron 55.0%
CCATAGCAGCCACCATTCAC+TGG + tig0040438:5649-5668 None:intergenic 55.0%
CCAGTGAATGGTGGCTGCTA+TGG - tig0040438:5646-5665 Msa1459760:intron 55.0%
GAGTGGAGGGTTCTTCATGG+AGG + tig0040438:5673-5692 None:intergenic 55.0%
AAGAACCCTCCACTCTACGG+TGG - tig0040438:5678-5697 Msa1459760:intron 55.0%
CTTCCTCCACACCATCTCCA+TGG + tig0040438:6416-6435 None:intergenic 55.0%
CACTGGAGAACAACTGCACC+GGG + tig0040438:6642-6661 None:intergenic 55.0%
GGTGCAGTTGTTCTCCAGTG+TGG - tig0040438:6642-6661 Msa1459760:intron 55.0%
GTTCCCCTCTTGCTACTAGG+TGG - tig0040438:6756-6775 Msa1459760:intron 55.0%
CCACCACCTAGTAGCAAGAG+GGG + tig0040438:6762-6781 None:intergenic 55.0%
GCCACCACCTAGTAGCAAGA+GGG + tig0040438:6763-6782 None:intergenic 55.0%
! CTCTTGCTACTAGGTGGTGG+CGG - tig0040438:6762-6781 Msa1459760:intron 55.0%
!! GTGGTGGCGGTTACACCATT+CGG - tig0040438:6775-6794 Msa1459760:intron 55.0%
!! TGCTCGGTGTTGGTGCTATG+AGG - tig0040438:6803-6822 Msa1459760:intron 55.0%
GATGAAGAAGGTGGGGCCAA+AGG + tig0040438:8037-8056 None:intergenic 55.0%
GCACGAGGTTTGTCTAGCCG+TGG - tig0040438:3917-3936 Msa1459760:intron 60.0%
ACAGAGGAGGTCGCCAGAAC+TGG - tig0040438:5353-5372 Msa1459760:CDS 60.0%
CAGAGGAGGTCGCCAGAACT+GGG - tig0040438:5354-5373 Msa1459760:CDS 60.0%
CCAATGGGCAATGGCAGCCA+TGG + tig0040438:5614-5633 None:intergenic 60.0%
CCATGGCTGCCATTGCCCAT+TGG - tig0040438:5611-5630 Msa1459760:intron 60.0%
CAGCAGGCACCAATGGGCAA+TGG + tig0040438:5623-5642 None:intergenic 60.0%
CCTCCACACCATCTCCATGG+TGG + tig0040438:6413-6432 None:intergenic 60.0%
CCACCATGGAGATGGTGTGG+AGG - tig0040438:6410-6429 Msa1459760:CDS 60.0%
TCACGCAAGTCGCCAGTACC+AGG + tig0040438:6498-6517 None:intergenic 60.0%
CCCCTCTTGCTACTAGGTGG+TGG - tig0040438:6759-6778 Msa1459760:intron 60.0%
CGCCACCACCTAGTAGCAAG+AGG + tig0040438:6764-6783 None:intergenic 60.0%
GGCACTCTGACAGAGGTCTC+TGG + tig0040438:6901-6920 None:intergenic 60.0%
AGGCAGACGGGAGTTGCTCT+TGG - tig0040438:7257-7276 Msa1459760:intron 60.0%
AGGAGGTCGCCAGAACTGGG+TGG - tig0040438:5357-5376 Msa1459760:CDS 65.0%
TGGGCGCAGCAGGCACCAAT+GGG + tig0040438:5629-5648 None:intergenic 65.0%
TGCCTGCTGCGCCCAGTGAA+TGG - tig0040438:5634-5653 Msa1459760:intron 65.0%
CACCATTCACTGGGCGCAGC+AGG + tig0040438:5639-5658 None:intergenic 65.0%
CTGCTGCGCCCAGTGAATGG+TGG - tig0040438:5637-5656 Msa1459760:intron 65.0%
CTGGGCGCAGCAGGCACCAA+TGG + tig0040438:5630-5649 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0040438 gene 3393 8423 3393 ID=Msa1459760;Name=Msa1459760
tig0040438 mRNA 3393 8423 3393 ID=Msa1459760-mRNA-1;Parent=Msa1459760;Name=Msa1459760-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.4|0.16|1|1|1|6|0|515
tig0040438 exon 7893 8423 7893 ID=Msa1459760-mRNA-1:exon:22423;Parent=Msa1459760-mRNA-1
tig0040438 exon 6303 6497 6303 ID=Msa1459760-mRNA-1:exon:22422;Parent=Msa1459760-mRNA-1
tig0040438 exon 4992 5432 4992 ID=Msa1459760-mRNA-1:exon:22421;Parent=Msa1459760-mRNA-1
tig0040438 exon 4323 4553 4323 ID=Msa1459760-mRNA-1:exon:22420;Parent=Msa1459760-mRNA-1
tig0040438 exon 3554 3624 3554 ID=Msa1459760-mRNA-1:exon:22419;Parent=Msa1459760-mRNA-1
tig0040438 exon 3393 3471 3393 ID=Msa1459760-mRNA-1:exon:22418;Parent=Msa1459760-mRNA-1
tig0040438 CDS 7893 8423 7893 ID=Msa1459760-mRNA-1:cds;Parent=Msa1459760-mRNA-1
tig0040438 CDS 6303 6497 6303 ID=Msa1459760-mRNA-1:cds;Parent=Msa1459760-mRNA-1
tig0040438 CDS 4992 5432 4992 ID=Msa1459760-mRNA-1:cds;Parent=Msa1459760-mRNA-1
tig0040438 CDS 4323 4553 4323 ID=Msa1459760-mRNA-1:cds;Parent=Msa1459760-mRNA-1
tig0040438 CDS 3554 3624 3554 ID=Msa1459760-mRNA-1:cds;Parent=Msa1459760-mRNA-1
tig0040438 CDS 3393 3471 3393 ID=Msa1459760-mRNA-1:cds;Parent=Msa1459760-mRNA-1
Gene Sequence

>Msa1459760

ATGGATGTCAGTGGCAATTCTCTTCCGTCTTCTGCACCTGATGGGGTAAAGAGAAAAGTATGCTATTTCTATGATCCTGAGGTTGGGAATTATTATTATGGCCAAGGTCATCCCATGAAGCCACATCGTATCCGCATGACACATGCCCTTCTTGCCCACTATGGATTGCTTCAGCACATGCAGGTCCACAAGCCTTTTCCTGCTAGAGACAGGGACCTTTGCCGTTTTCATGCTGATGATTATGTTTCATTTCTTCGAAGCATAACCCCTGAAACACAACAGGATCATATGAGACAACTCAAACGCTTTAACGTTGGTGAAGATTGTCCTGTCTTTGATGGCCTATACTCTTTCTGTCAAACTTATGCTGGAGGTTCAGTTGGTGGTGCTGTCAAGTTGAATCACGATCAATGTGATATTGCTGTTAACTGGGCTGGTGGACTGCATCATGCCAAGAAGTGTGAGGCTTCTGGATTTTGCTATGTTAATGATATAGTCCTTGCAATCTTAGAACTTCTTAAACAGCACGAGAATCCAGGAGATAAAAAAAACAGAAGCAGGAAGAACAGAGGAGGTCGCCAGAACTGGGTGGTTGCTGTATGCCATAATACAGACAGCCAGTCACTAGAGATAGAAACGATGAACAACGAGATGAATGAGAGTGTAGAGTGCAACAGTGCATTGAAGAGAACTGCTGCAAATGCGATGCTGCAACTTTCTTCTAGGCGTGTTCTATATGTGGACATTGATATCCACCATGGAGATGGTGTGGAGGAAGCTTTCTACACTACTGATAGAGTCATGACTGTTTCTTTCCATAAATTTGGTGATTATTTTCCTGGTACTGGCGACTTGCGTGATATTGGATATGGAAAGGGAAAATACTACTCTCTTAATGTTCCACTTGATGACGGCATTGATGATGAGAGTTATCATTTGTTGTTCAAACCTTTAATCGGCAAAGTAATGGAAATCTTTAGGCCCGGTGCAGTTGTTCTCCAGTGTGGTGCAGACTCTTTATCTGGAGACAGGTTGGGATGCTTTAATCTTTCAATTAGGGGTCATGCAGAGTGTGTCAGATACATGAGATCATTCAATGTTCCCCTCTTGCTACTAGGTGGTGGCGGTTACACCATTCGGAATGTTGCTCGGTGTTGGTGCTATGAGACGGGAGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCAGAGCACGAGTATTATGAATATTTCGGTCCAGATTATACCCTTCATGTTGCCCCAAGTAACATGGAAAACAAAAATACCCGACATTTACTTGATAATATCCGATCTAAGCTACTTGAGAATCTTTCGAAGCTGCAACATGCTCCCAGTGTTCAATTTCAGGAAAGGCCTCCTGATTCTGATCTTGGAGAGGAATTTGACGATCATGAAGATAGAGATGAGCATTGGGATCCAGATTCTGGCATGGACATTGATGTTGAACGCGATATTCTCCAAAGCAAAGTCAAGAGAGAAATTGTTGAATCTCAGCTCAATGATCCGGTGTGTGTATTTATCTTTTGA

Protein sequence

>Msa1459760

MDVSGNSLPSSAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRFHADDYVSFLRSITPETQQDHMRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHENPGDKKNRSRKNRGGRQNWVVAVCHNTDSQSLEIETMNNEMNESVECNSALKRTAANAMLQLSSRRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDLRDIGYGKGKYYSLNVPLDDGIDDESYHLLFKPLIGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPEHEYYEYFGPDYTLHVAPSNMENKNTRHLLDNIRSKLLENLSKLQHAPSVQFQERPPDSDLGEEFDDHEDRDEHWDPDSGMDIDVERDILQSKVKREIVESQLNDPVCVFIF*