Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041670 | sp|Q9SXP7|LIP2M_ARATH | 73.191 | 235 | 63 | 0 | 67 | 301 | 1 | 235 | 1.59e-129 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041670 | Msa0044700 | 0.815186 | 1.051657e-51 | -8.615850e-47 |
| Msa0041670 | Msa0474290 | 0.802709 | 4.932144e-49 | -8.615850e-47 |
| Msa0041670 | Msa0518720 | 0.807511 | 4.877443e-50 | -8.615850e-47 |
| Msa0041670 | Msa0619450 | 0.801664 | 8.094591e-49 | -8.615850e-47 |
| Msa0041670 | Msa0619530 | 0.801152 | 1.030526e-48 | -8.615850e-47 |
| Msa0041670 | Msa0659580 | 0.801965 | 7.019741e-49 | -8.615850e-47 |
| Msa0041670 | Msa1225280 | 0.807596 | 4.679646e-50 | -8.615850e-47 |
| Msa0041670 | Msa1244940 | 0.804122 | 2.513799e-49 | -8.615850e-47 |
| Msa0041670 | Msa1325260 | 0.801594 | 8.364918e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041670 | MtrunA17_Chr1g0207181 | 95.319 | 235 | 11 | 0 | 67 | 301 | 1 | 235 | 1.36e-168 | 466 |
| Msa0041670 | MtrunA17_Chr3g0141301 | 37.186 | 199 | 113 | 6 | 65 | 255 | 42 | 236 | 3.78e-35 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041670 | AT1G04640.1 | 73.191 | 235 | 63 | 0 | 67 | 301 | 1 | 235 | 1.62e-130 | 370 |
| Msa0041670 | AT1G04640.2 | 73.191 | 235 | 63 | 0 | 67 | 301 | 1 | 235 | 1.62e-130 | 370 |
| Msa0041670 | AT1G47578.1 | 31.008 | 258 | 153 | 6 | 32 | 280 | 25 | 266 | 6.59e-35 | 128 |
| Msa0041670 | AT4G31050.1 | 35.514 | 214 | 121 | 6 | 80 | 280 | 54 | 263 | 1.47e-33 | 124 |
Find 73 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCCTTGAGGTATGGAAAA+TGG | 0.246851 | 1_1:+72097624 | Msa0041670:CDS |
| AATGGGAGTCGTCAACTATT+TGG | 0.263377 | 1_1:+72097642 | Msa0041670:CDS |
| ATCCTGATTTAAACTACTTT+AGG | 0.329725 | 1_1:+72098106 | Msa0041670:CDS |
| TATCTATATGATATGTGAAT+TGG | 0.346301 | 1_1:+72098437 | Msa0041670:three_prime_UTR |
| ATTAATCCCTCAGTCAGAAT+TGG | 0.351556 | 1_1:+72097789 | Msa0041670:CDS |
| AAGATAGAATTCCCAGTGTT+TGG | 0.352118 | 1_1:-72097066 | None:intergenic |
| AGATTGCGAGGGAATGGAAT+TGG | 0.374876 | 1_1:-72097091 | None:intergenic |
| GGAGGAGACATTACATTTCA+TGG | 0.377047 | 1_1:+72097847 | Msa0041670:CDS |
| ATTGAACTGGCAGGTCTATA+CGG | 0.398561 | 1_1:+72097961 | Msa0041670:CDS |
| TGCCTAAAGTAGTTTAAATC+AGG | 0.405093 | 1_1:-72098108 | None:intergenic |
| GTGTCACGAAGCGATATAAT+AGG | 0.406473 | 1_1:-72097892 | None:intergenic |
| ATCTATATGATATGTGAATT+GGG | 0.411078 | 1_1:+72098438 | Msa0041670:three_prime_UTR |
| AGAAGAAGATTGCGAGGGAA+TGG | 0.421999 | 1_1:-72097097 | None:intergenic |
| AGAATACACAAGAATTGTAT+TGG | 0.427829 | 1_1:-72098385 | None:intergenic |
| CCTGGACGGAAGTGTGAGAC+AGG | 0.429668 | 1_1:+72097997 | Msa0041670:CDS |
| TTTGTTATGATAACCTGATC+TGG | 0.432359 | 1_1:+72098250 | Msa0041670:CDS |
| TGAGTTAACTATGATTGAAC+TGG | 0.440439 | 1_1:+72097948 | Msa0041670:CDS |
| TCGCTTCGTGACACGGGACT+TGG | 0.444478 | 1_1:+72097901 | Msa0041670:CDS |
| AAGCATCCTCCTTCCAGATC+AGG | 0.452858 | 1_1:-72098263 | None:intergenic |
| CTCTTGTATTATTTCTTCTG+CGG | 0.453281 | 1_1:-72098199 | None:intergenic |
| ACCCTTGAGGTATGGAAAAT+GGG | 0.459093 | 1_1:+72097625 | Msa0041670:CDS |
| CTTTGCGAACCCTTGAGGTA+TGG | 0.471055 | 1_1:+72097617 | Msa0041670:CDS |
| AGAAATAATACAAGAGCAGT+TGG | 0.475927 | 1_1:+72098206 | Msa0041670:CDS |
| TCGAATGGAATCACATCTCA+TGG | 0.486789 | 1_1:+72098066 | Msa0041670:CDS |
| GAAAGAAAGATAGGTGCAAT+TGG | 0.488210 | 1_1:+72098033 | Msa0041670:CDS |
| ACTGCAAGAAAAGCTAGTCT+TGG | 0.489810 | 1_1:+72097675 | Msa0041670:CDS |
| TACGGTGTGAAAGCTTCTCC+TGG | 0.494159 | 1_1:+72097979 | Msa0041670:CDS |
| AGATAGGTGCAATTGGTGTT+CGG | 0.495508 | 1_1:+72098040 | Msa0041670:CDS |
| TTTCCTTCCACTCCAAACAC+TGG | 0.495760 | 1_1:+72097054 | Msa0041670:CDS |
| TTCCCAGTGTTTGGAGTGGA+AGG | 0.502870 | 1_1:-72097057 | None:intergenic |
| CAGTCAGAATTGGAACAGAT+TGG | 0.505622 | 1_1:+72097799 | Msa0041670:CDS |
| TGTGAGACAGGGGTGTGGGT+TGG | 0.510744 | 1_1:+72098009 | Msa0041670:CDS |
| CGATATAATAGGATATAAAA+CGG | 0.511175 | 1_1:-72097881 | None:intergenic |
| TATTATATCGCTTCGTGACA+CGG | 0.511545 | 1_1:+72097894 | Msa0041670:CDS |
| CCTGTCTCACACTTCCGTCC+AGG | 0.519983 | 1_1:-72097997 | None:intergenic |
| AGATGGGTAACAGTGCAATT+CGG | 0.520833 | 1_1:-72097185 | None:intergenic |
| TTGCCAACTGTGTATGTAGG+AGG | 0.525301 | 1_1:-72097745 | None:intergenic |
| GGAAGTGTGAGACAGGGGTG+TGG | 0.527087 | 1_1:+72098004 | Msa0041670:CDS |
| TCTTGTATTATTTCTTCTGC+GGG | 0.538283 | 1_1:-72098198 | None:intergenic |
| TGGGTTGGAGAAAGAAAGAT+AGG | 0.538417 | 1_1:+72098024 | Msa0041670:CDS |
| GTATTATTTCTTCTGCGGGA+AGG | 0.543520 | 1_1:-72098194 | None:intergenic |
| TAATAGGATATAAAACGGCT+TGG | 0.546253 | 1_1:-72097876 | None:intergenic |
| AAGAAGTGACATCTTTGAGA+AGG | 0.546776 | 1_1:+72098157 | Msa0041670:CDS |
| ATTATATCGCTTCGTGACAC+GGG | 0.547070 | 1_1:+72097895 | Msa0041670:CDS |
| TTCCTTCCACTCCAAACACT+GGG | 0.551759 | 1_1:+72097055 | Msa0041670:CDS |
| TCTGTTCCAATTCTGACTGA+GGG | 0.560843 | 1_1:-72097795 | None:intergenic |
| TTGATGAGTGAAAATTGAGA+TGG | 0.562615 | 1_1:-72097202 | None:intergenic |
| TTATTGTGAACAGGCAATGA+GGG | 0.574750 | 1_1:+72097594 | Msa0041670:intron |
| GGATATAAAACGGCTTGGTG+TGG | 0.578369 | 1_1:-72097871 | None:intergenic |
| ATCTGTTCCAATTCTGACTG+AGG | 0.581218 | 1_1:-72097796 | None:intergenic |
| CACCCTCCTACATACACAGT+TGG | 0.584308 | 1_1:+72097742 | Msa0041670:CDS |
| CAAGTAAAAGCAGAATACAT+AGG | 0.584747 | 1_1:-72098466 | None:intergenic |
| TTAACTATGATTGAACTGGC+AGG | 0.588243 | 1_1:+72097952 | Msa0041670:CDS |
| AGAAGTGACATCTTTGAGAA+GGG | 0.590766 | 1_1:+72098158 | Msa0041670:CDS |
| ATTGGTGTTCGGATATCGAA+TGG | 0.591517 | 1_1:+72098051 | Msa0041670:CDS |
| TGCCAACTGTGTATGTAGGA+GGG | 0.592743 | 1_1:-72097744 | None:intergenic |
| GAGGGCTTTGCGAACCCTTG+AGG | 0.595771 | 1_1:+72097612 | Msa0041670:CDS |
| TGGAATCACATCTCATGGGA+TGG | 0.599127 | 1_1:+72098071 | Msa0041670:CDS |
| GAAGTGTGAGACAGGGGTGT+GGG | 0.599296 | 1_1:+72098005 | Msa0041670:CDS |
| TTATGATAACCTGATCTGGA+AGG | 0.606668 | 1_1:+72098254 | Msa0041670:CDS |
| GTTATTGTGAACAGGCAATG+AGG | 0.613331 | 1_1:+72097593 | Msa0041670:intron |
| TTTAGGCACATTGTTCCATG+TGG | 0.613753 | 1_1:+72098123 | Msa0041670:CDS |
| GAAGAAGAAGAAGATTGCGA+GGG | 0.614648 | 1_1:-72097102 | None:intergenic |
| AGAATTCCCAGTGTTTGGAG+TGG | 0.615436 | 1_1:-72097061 | None:intergenic |
| CGAATGGAATCACATCTCAT+GGG | 0.618516 | 1_1:+72098067 | Msa0041670:CDS |
| GTGTGAAAGCTTCTCCTGGA+CGG | 0.618731 | 1_1:+72097983 | Msa0041670:CDS |
| TGATGAGTGAAAATTGAGAT+GGG | 0.619726 | 1_1:-72097201 | None:intergenic |
| TCTTTATCAGCAATTCCACA+TGG | 0.622420 | 1_1:-72098138 | None:intergenic |
| CTGGACGGAAGTGTGAGACA+GGG | 0.627674 | 1_1:+72097998 | Msa0041670:CDS |
| TGATAACCTGATCTGGAAGG+AGG | 0.638806 | 1_1:+72098257 | Msa0041670:CDS |
| GAACTTCACTGCACACAACG+TGG | 0.659925 | 1_1:+72097826 | Msa0041670:CDS |
| TGGACGGAAGTGTGAGACAG+GGG | 0.671496 | 1_1:+72097999 | Msa0041670:CDS |
| CTTCACTGCACACAACGTGG+AGG | 0.716359 | 1_1:+72097829 | Msa0041670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAAATTTATTGAATATA+TGG | + | chr1_1:72097344-72097363 | Msa0041670:intron | 10.0% |
| !! | ATTGAAATTTATTGAATATA+TGG | + | chr1_1:72097344-72097363 | Msa0041670:intron | 10.0% |
| !! | TTACCTGGAAAAATAAAAAA+TGG | - | chr1_1:72097231-72097250 | None:intergenic | 20.0% |
| !! | TTAGAATCTATACAAAAAGT+TGG | - | chr1_1:72097413-72097432 | None:intergenic | 20.0% |
| !!! | TAATATTTTGCTTCATTTTG+TGG | + | chr1_1:72097430-72097449 | Msa0041670:intron | 20.0% |
| !! | CGATATAATAGGATATAAAA+CGG | - | chr1_1:72097884-72097903 | None:intergenic | 20.0% |
| !! | TATCTATATGATATGTGAAT+TGG | + | chr1_1:72098437-72098456 | Msa0041670:three_prime_UTR | 20.0% |
| !! | ATCTATATGATATGTGAATT+GGG | + | chr1_1:72098438-72098457 | Msa0041670:three_prime_UTR | 20.0% |
| !! | TTACCTGGAAAAATAAAAAA+TGG | - | chr1_1:72097231-72097250 | None:intergenic | 20.0% |
| !! | TTAGAATCTATACAAAAAGT+TGG | - | chr1_1:72097413-72097432 | None:intergenic | 20.0% |
| !!! | TAATATTTTGCTTCATTTTG+TGG | + | chr1_1:72097430-72097449 | Msa0041670:intron | 20.0% |
| !! | CGATATAATAGGATATAAAA+CGG | - | chr1_1:72097884-72097903 | None:intergenic | 20.0% |
| !! | TATCTATATGATATGTGAAT+TGG | + | chr1_1:72098437-72098456 | Msa0041670:three_prime_UTR | 20.0% |
| !! | ATCTATATGATATGTGAATT+GGG | + | chr1_1:72098438-72098457 | Msa0041670:three_prime_UTR | 20.0% |
| !!! | GTACCATTTTTTATTTTTCC+AGG | + | chr1_1:72097225-72097244 | Msa0041670:CDS | 25.0% |
| !! | TTCATTTTGTGGTTACTTAT+GGG | + | chr1_1:72097441-72097460 | Msa0041670:intron | 25.0% |
| !!! | TTGATAATGTTATTGTGAAC+AGG | + | chr1_1:72097585-72097604 | Msa0041670:intron | 25.0% |
| ! | ATCCTGATTTAAACTACTTT+AGG | + | chr1_1:72098106-72098125 | Msa0041670:CDS | 25.0% |
| ! | AGAATACACAAGAATTGTAT+TGG | - | chr1_1:72098388-72098407 | None:intergenic | 25.0% |
| !!! | GTACCATTTTTTATTTTTCC+AGG | + | chr1_1:72097225-72097244 | Msa0041670:CDS | 25.0% |
| !! | TTCATTTTGTGGTTACTTAT+GGG | + | chr1_1:72097441-72097460 | Msa0041670:intron | 25.0% |
| !!! | TTGATAATGTTATTGTGAAC+AGG | + | chr1_1:72097585-72097604 | Msa0041670:intron | 25.0% |
| ! | ATCCTGATTTAAACTACTTT+AGG | + | chr1_1:72098106-72098125 | Msa0041670:CDS | 25.0% |
| ! | AGAATACACAAGAATTGTAT+TGG | - | chr1_1:72098388-72098407 | None:intergenic | 25.0% |
| TGATGAGTGAAAATTGAGAT+GGG | - | chr1_1:72097204-72097223 | None:intergenic | 30.0% | |
| TTGATGAGTGAAAATTGAGA+TGG | - | chr1_1:72097205-72097224 | None:intergenic | 30.0% | |
| CAATGTAGAATTGCATATTG+AGG | - | chr1_1:72097265-72097284 | None:intergenic | 30.0% | |
| CTCAATATGCAATTCTACAT+TGG | + | chr1_1:72097263-72097282 | Msa0041670:intron | 30.0% | |
| GAAGAAACATTTCAACAAAC+AGG | - | chr1_1:72097391-72097410 | None:intergenic | 30.0% | |
| ! | CTTCATTTTGTGGTTACTTA+TGG | + | chr1_1:72097440-72097459 | Msa0041670:intron | 30.0% |
| ! | GATTGTATGGATGCAAATTT+TGG | + | chr1_1:72097470-72097489 | Msa0041670:intron | 30.0% |
| TTTCATGTCTCAAATCTAGA+AGG | - | chr1_1:72097531-72097550 | None:intergenic | 30.0% | |
| TAATAGGATATAAAACGGCT+TGG | - | chr1_1:72097879-72097898 | None:intergenic | 30.0% | |
| TGAGTTAACTATGATTGAAC+TGG | + | chr1_1:72097948-72097967 | Msa0041670:CDS | 30.0% | |
| TGCCTAAAGTAGTTTAAATC+AGG | - | chr1_1:72098111-72098130 | None:intergenic | 30.0% | |
| ! | TCTTGTATTATTTCTTCTGC+GGG | - | chr1_1:72098201-72098220 | None:intergenic | 30.0% |
| ! | CTCTTGTATTATTTCTTCTG+CGG | - | chr1_1:72098202-72098221 | None:intergenic | 30.0% |
| AGAAATAATACAAGAGCAGT+TGG | + | chr1_1:72098206-72098225 | Msa0041670:CDS | 30.0% | |
| ! | TTTGTTATGATAACCTGATC+TGG | + | chr1_1:72098250-72098269 | Msa0041670:CDS | 30.0% |
| CAAGTAAAAGCAGAATACAT+AGG | - | chr1_1:72098469-72098488 | None:intergenic | 30.0% | |
| TGATGAGTGAAAATTGAGAT+GGG | - | chr1_1:72097204-72097223 | None:intergenic | 30.0% | |
| TTGATGAGTGAAAATTGAGA+TGG | - | chr1_1:72097205-72097224 | None:intergenic | 30.0% | |
| CAATGTAGAATTGCATATTG+AGG | - | chr1_1:72097265-72097284 | None:intergenic | 30.0% | |
| CTCAATATGCAATTCTACAT+TGG | + | chr1_1:72097263-72097282 | Msa0041670:intron | 30.0% | |
| GAAGAAACATTTCAACAAAC+AGG | - | chr1_1:72097391-72097410 | None:intergenic | 30.0% | |
| ! | CTTCATTTTGTGGTTACTTA+TGG | + | chr1_1:72097440-72097459 | Msa0041670:intron | 30.0% |
| ! | GATTGTATGGATGCAAATTT+TGG | + | chr1_1:72097470-72097489 | Msa0041670:intron | 30.0% |
| TTTCATGTCTCAAATCTAGA+AGG | - | chr1_1:72097531-72097550 | None:intergenic | 30.0% | |
| TAATAGGATATAAAACGGCT+TGG | - | chr1_1:72097879-72097898 | None:intergenic | 30.0% | |
| TGAGTTAACTATGATTGAAC+TGG | + | chr1_1:72097948-72097967 | Msa0041670:CDS | 30.0% | |
| TGCCTAAAGTAGTTTAAATC+AGG | - | chr1_1:72098111-72098130 | None:intergenic | 30.0% | |
| ! | TCTTGTATTATTTCTTCTGC+GGG | - | chr1_1:72098201-72098220 | None:intergenic | 30.0% |
| ! | CTCTTGTATTATTTCTTCTG+CGG | - | chr1_1:72098202-72098221 | None:intergenic | 30.0% |
| AGAAATAATACAAGAGCAGT+TGG | + | chr1_1:72098206-72098225 | Msa0041670:CDS | 30.0% | |
| ! | TTTGTTATGATAACCTGATC+TGG | + | chr1_1:72098250-72098269 | Msa0041670:CDS | 30.0% |
| CAAGTAAAAGCAGAATACAT+AGG | - | chr1_1:72098469-72098488 | None:intergenic | 30.0% | |
| AAGATAGAATTCCCAGTGTT+TGG | - | chr1_1:72097069-72097088 | None:intergenic | 35.0% | |
| !! | AGATGCAAATGGGTTTTCAA+CGG | - | chr1_1:72097301-72097320 | None:intergenic | 35.0% |
| AGCAGTTACTAGATGCAAAT+GGG | - | chr1_1:72097311-72097330 | None:intergenic | 35.0% | |
| AAGCAGTTACTAGATGCAAA+TGG | - | chr1_1:72097312-72097331 | None:intergenic | 35.0% | |
| CATTTCAACAAACAGGTACA+GGG | - | chr1_1:72097384-72097403 | None:intergenic | 35.0% | |
| ACATTTCAACAAACAGGTAC+AGG | - | chr1_1:72097385-72097404 | None:intergenic | 35.0% | |
| !! | TATGGATGCAAATTTTGGTG+TGG | + | chr1_1:72097475-72097494 | Msa0041670:intron | 35.0% |
| TTATTGTGAACAGGCAATGA+GGG | + | chr1_1:72097594-72097613 | Msa0041670:intron | 35.0% | |
| ATTAATCCCTCAGTCAGAAT+TGG | + | chr1_1:72097789-72097808 | Msa0041670:CDS | 35.0% | |
| TATTATATCGCTTCGTGACA+CGG | + | chr1_1:72097894-72097913 | Msa0041670:CDS | 35.0% | |
| TTAACTATGATTGAACTGGC+AGG | + | chr1_1:72097952-72097971 | Msa0041670:CDS | 35.0% | |
| GAAAGAAAGATAGGTGCAAT+TGG | + | chr1_1:72098033-72098052 | Msa0041670:CDS | 35.0% | |
| TCTTTATCAGCAATTCCACA+TGG | - | chr1_1:72098141-72098160 | None:intergenic | 35.0% | |
| ! | AAGAAGTGACATCTTTGAGA+AGG | + | chr1_1:72098157-72098176 | Msa0041670:CDS | 35.0% |
| ! | AGAAGTGACATCTTTGAGAA+GGG | + | chr1_1:72098158-72098177 | Msa0041670:CDS | 35.0% |
| TTATGATAACCTGATCTGGA+AGG | + | chr1_1:72098254-72098273 | Msa0041670:CDS | 35.0% | |
| AAGATAGAATTCCCAGTGTT+TGG | - | chr1_1:72097069-72097088 | None:intergenic | 35.0% | |
| !! | AGATGCAAATGGGTTTTCAA+CGG | - | chr1_1:72097301-72097320 | None:intergenic | 35.0% |
| AGCAGTTACTAGATGCAAAT+GGG | - | chr1_1:72097311-72097330 | None:intergenic | 35.0% | |
| AAGCAGTTACTAGATGCAAA+TGG | - | chr1_1:72097312-72097331 | None:intergenic | 35.0% | |
| CATTTCAACAAACAGGTACA+GGG | - | chr1_1:72097384-72097403 | None:intergenic | 35.0% | |
| ACATTTCAACAAACAGGTAC+AGG | - | chr1_1:72097385-72097404 | None:intergenic | 35.0% | |
| !! | TATGGATGCAAATTTTGGTG+TGG | + | chr1_1:72097475-72097494 | Msa0041670:intron | 35.0% |
| TTATTGTGAACAGGCAATGA+GGG | + | chr1_1:72097594-72097613 | Msa0041670:intron | 35.0% | |
| ATTAATCCCTCAGTCAGAAT+TGG | + | chr1_1:72097789-72097808 | Msa0041670:CDS | 35.0% | |
| TATTATATCGCTTCGTGACA+CGG | + | chr1_1:72097894-72097913 | Msa0041670:CDS | 35.0% | |
| TTAACTATGATTGAACTGGC+AGG | + | chr1_1:72097952-72097971 | Msa0041670:CDS | 35.0% | |
| GAAAGAAAGATAGGTGCAAT+TGG | + | chr1_1:72098033-72098052 | Msa0041670:CDS | 35.0% | |
| TCTTTATCAGCAATTCCACA+TGG | - | chr1_1:72098141-72098160 | None:intergenic | 35.0% | |
| ! | AAGAAGTGACATCTTTGAGA+AGG | + | chr1_1:72098157-72098176 | Msa0041670:CDS | 35.0% |
| ! | AGAAGTGACATCTTTGAGAA+GGG | + | chr1_1:72098158-72098177 | Msa0041670:CDS | 35.0% |
| TTATGATAACCTGATCTGGA+AGG | + | chr1_1:72098254-72098273 | Msa0041670:CDS | 35.0% | |
| GAAGAAGAAGAAGATTGCGA+GGG | - | chr1_1:72097105-72097124 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAGATTGCG+AGG | - | chr1_1:72097106-72097125 | None:intergenic | 40.0% | |
| AGATGGGTAACAGTGCAATT+CGG | - | chr1_1:72097188-72097207 | None:intergenic | 40.0% | |
| GAGGTTAAGAAAGACTTACC+TGG | - | chr1_1:72097246-72097265 | None:intergenic | 40.0% | |
| TTGTGGTTACTTATGGGTAG+TGG | + | chr1_1:72097447-72097466 | Msa0041670:intron | 40.0% | |
| TGTGGTTACTTATGGGTAGT+GGG | + | chr1_1:72097448-72097467 | Msa0041670:intron | 40.0% | |
| !! | TTATGGGTAGTGGGATTGTA+TGG | + | chr1_1:72097457-72097476 | Msa0041670:intron | 40.0% |
| GTTATTGTGAACAGGCAATG+AGG | + | chr1_1:72097593-72097612 | Msa0041670:intron | 40.0% | |
| AACCCTTGAGGTATGGAAAA+TGG | + | chr1_1:72097624-72097643 | Msa0041670:CDS | 40.0% | |
| ACCCTTGAGGTATGGAAAAT+GGG | + | chr1_1:72097625-72097644 | Msa0041670:CDS | 40.0% | |
| ! | TCCCATTTTCCATACCTCAA+GGG | - | chr1_1:72097629-72097648 | None:intergenic | 40.0% |
| AATGGGAGTCGTCAACTATT+TGG | + | chr1_1:72097642-72097661 | Msa0041670:CDS | 40.0% | |
| ! | ACTGCAAGAAAAGCTAGTCT+TGG | + | chr1_1:72097675-72097694 | Msa0041670:CDS | 40.0% |
| ! | CTTTTGCCAACTGTGTATGT+AGG | - | chr1_1:72097751-72097770 | None:intergenic | 40.0% |
| TCTGTTCCAATTCTGACTGA+GGG | - | chr1_1:72097798-72097817 | None:intergenic | 40.0% | |
| ATCTGTTCCAATTCTGACTG+AGG | - | chr1_1:72097799-72097818 | None:intergenic | 40.0% | |
| CAGTCAGAATTGGAACAGAT+TGG | + | chr1_1:72097799-72097818 | Msa0041670:CDS | 40.0% | |
| GGAGGAGACATTACATTTCA+TGG | + | chr1_1:72097847-72097866 | Msa0041670:CDS | 40.0% | |
| GTGTCACGAAGCGATATAAT+AGG | - | chr1_1:72097895-72097914 | None:intergenic | 40.0% | |
| ATTATATCGCTTCGTGACAC+GGG | + | chr1_1:72097895-72097914 | Msa0041670:CDS | 40.0% | |
| ATTGAACTGGCAGGTCTATA+CGG | + | chr1_1:72097961-72097980 | Msa0041670:CDS | 40.0% | |
| ! | TGGGTTGGAGAAAGAAAGAT+AGG | + | chr1_1:72098024-72098043 | Msa0041670:CDS | 40.0% |
| ! | AGATAGGTGCAATTGGTGTT+CGG | + | chr1_1:72098040-72098059 | Msa0041670:CDS | 40.0% |
| ! | ATTGGTGTTCGGATATCGAA+TGG | + | chr1_1:72098051-72098070 | Msa0041670:CDS | 40.0% |
| TCGAATGGAATCACATCTCA+TGG | + | chr1_1:72098066-72098085 | Msa0041670:CDS | 40.0% | |
| CGAATGGAATCACATCTCAT+GGG | + | chr1_1:72098067-72098086 | Msa0041670:CDS | 40.0% | |
| TTTAGGCACATTGTTCCATG+TGG | + | chr1_1:72098123-72098142 | Msa0041670:CDS | 40.0% | |
| ! | GTATTATTTCTTCTGCGGGA+AGG | - | chr1_1:72098197-72098216 | None:intergenic | 40.0% |
| GAAGAAGAAGAAGATTGCGA+GGG | - | chr1_1:72097105-72097124 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAGATTGCG+AGG | - | chr1_1:72097106-72097125 | None:intergenic | 40.0% | |
| AGATGGGTAACAGTGCAATT+CGG | - | chr1_1:72097188-72097207 | None:intergenic | 40.0% | |
| GAGGTTAAGAAAGACTTACC+TGG | - | chr1_1:72097246-72097265 | None:intergenic | 40.0% | |
| TTGTGGTTACTTATGGGTAG+TGG | + | chr1_1:72097447-72097466 | Msa0041670:intron | 40.0% | |
| TGTGGTTACTTATGGGTAGT+GGG | + | chr1_1:72097448-72097467 | Msa0041670:intron | 40.0% | |
| !! | TTATGGGTAGTGGGATTGTA+TGG | + | chr1_1:72097457-72097476 | Msa0041670:intron | 40.0% |
| GTTATTGTGAACAGGCAATG+AGG | + | chr1_1:72097593-72097612 | Msa0041670:intron | 40.0% | |
| AACCCTTGAGGTATGGAAAA+TGG | + | chr1_1:72097624-72097643 | Msa0041670:CDS | 40.0% | |
| ACCCTTGAGGTATGGAAAAT+GGG | + | chr1_1:72097625-72097644 | Msa0041670:CDS | 40.0% | |
| ! | TCCCATTTTCCATACCTCAA+GGG | - | chr1_1:72097629-72097648 | None:intergenic | 40.0% |
| AATGGGAGTCGTCAACTATT+TGG | + | chr1_1:72097642-72097661 | Msa0041670:CDS | 40.0% | |
| ! | ACTGCAAGAAAAGCTAGTCT+TGG | + | chr1_1:72097675-72097694 | Msa0041670:CDS | 40.0% |
| ! | CTTTTGCCAACTGTGTATGT+AGG | - | chr1_1:72097751-72097770 | None:intergenic | 40.0% |
| TCTGTTCCAATTCTGACTGA+GGG | - | chr1_1:72097798-72097817 | None:intergenic | 40.0% | |
| ATCTGTTCCAATTCTGACTG+AGG | - | chr1_1:72097799-72097818 | None:intergenic | 40.0% | |
| CAGTCAGAATTGGAACAGAT+TGG | + | chr1_1:72097799-72097818 | Msa0041670:CDS | 40.0% | |
| GGAGGAGACATTACATTTCA+TGG | + | chr1_1:72097847-72097866 | Msa0041670:CDS | 40.0% | |
| GTGTCACGAAGCGATATAAT+AGG | - | chr1_1:72097895-72097914 | None:intergenic | 40.0% | |
| ATTATATCGCTTCGTGACAC+GGG | + | chr1_1:72097895-72097914 | Msa0041670:CDS | 40.0% | |
| ATTGAACTGGCAGGTCTATA+CGG | + | chr1_1:72097961-72097980 | Msa0041670:CDS | 40.0% | |
| ! | TGGGTTGGAGAAAGAAAGAT+AGG | + | chr1_1:72098024-72098043 | Msa0041670:CDS | 40.0% |
| ! | AGATAGGTGCAATTGGTGTT+CGG | + | chr1_1:72098040-72098059 | Msa0041670:CDS | 40.0% |
| ! | ATTGGTGTTCGGATATCGAA+TGG | + | chr1_1:72098051-72098070 | Msa0041670:CDS | 40.0% |
| TCGAATGGAATCACATCTCA+TGG | + | chr1_1:72098066-72098085 | Msa0041670:CDS | 40.0% | |
| CGAATGGAATCACATCTCAT+GGG | + | chr1_1:72098067-72098086 | Msa0041670:CDS | 40.0% | |
| TTTAGGCACATTGTTCCATG+TGG | + | chr1_1:72098123-72098142 | Msa0041670:CDS | 40.0% | |
| ! | GTATTATTTCTTCTGCGGGA+AGG | - | chr1_1:72098197-72098216 | None:intergenic | 40.0% |
| TTTCCTTCCACTCCAAACAC+TGG | + | chr1_1:72097054-72097073 | Msa0041670:CDS | 45.0% | |
| TTCCTTCCACTCCAAACACT+GGG | + | chr1_1:72097055-72097074 | Msa0041670:CDS | 45.0% | |
| AGAATTCCCAGTGTTTGGAG+TGG | - | chr1_1:72097064-72097083 | None:intergenic | 45.0% | |
| AGATTGCGAGGGAATGGAAT+TGG | - | chr1_1:72097094-72097113 | None:intergenic | 45.0% | |
| AGAAGAAGATTGCGAGGGAA+TGG | - | chr1_1:72097100-72097119 | None:intergenic | 45.0% | |
| ! | AAACAGGTACAGGGCATTCA+CGG | - | chr1_1:72097375-72097394 | None:intergenic | 45.0% |
| ! | CTCCCATTTTCCATACCTCA+AGG | - | chr1_1:72097630-72097649 | None:intergenic | 45.0% |
| TGCCAACTGTGTATGTAGGA+GGG | - | chr1_1:72097747-72097766 | None:intergenic | 45.0% | |
| TTGCCAACTGTGTATGTAGG+AGG | - | chr1_1:72097748-72097767 | None:intergenic | 45.0% | |
| !! | GGATATAAAACGGCTTGGTG+TGG | - | chr1_1:72097874-72097893 | None:intergenic | 45.0% |
| TGGAATCACATCTCATGGGA+TGG | + | chr1_1:72098071-72098090 | Msa0041670:CDS | 45.0% | |
| TGATAACCTGATCTGGAAGG+AGG | + | chr1_1:72098257-72098276 | Msa0041670:CDS | 45.0% | |
| TTTCCTTCCACTCCAAACAC+TGG | + | chr1_1:72097054-72097073 | Msa0041670:CDS | 45.0% | |
| TTCCTTCCACTCCAAACACT+GGG | + | chr1_1:72097055-72097074 | Msa0041670:CDS | 45.0% | |
| AGAATTCCCAGTGTTTGGAG+TGG | - | chr1_1:72097064-72097083 | None:intergenic | 45.0% | |
| AGATTGCGAGGGAATGGAAT+TGG | - | chr1_1:72097094-72097113 | None:intergenic | 45.0% | |
| AGAAGAAGATTGCGAGGGAA+TGG | - | chr1_1:72097100-72097119 | None:intergenic | 45.0% | |
| ! | AAACAGGTACAGGGCATTCA+CGG | - | chr1_1:72097375-72097394 | None:intergenic | 45.0% |
| ! | CTCCCATTTTCCATACCTCA+AGG | - | chr1_1:72097630-72097649 | None:intergenic | 45.0% |
| TGCCAACTGTGTATGTAGGA+GGG | - | chr1_1:72097747-72097766 | None:intergenic | 45.0% | |
| TTGCCAACTGTGTATGTAGG+AGG | - | chr1_1:72097748-72097767 | None:intergenic | 45.0% | |
| !! | GGATATAAAACGGCTTGGTG+TGG | - | chr1_1:72097874-72097893 | None:intergenic | 45.0% |
| TGGAATCACATCTCATGGGA+TGG | + | chr1_1:72098071-72098090 | Msa0041670:CDS | 45.0% | |
| TGATAACCTGATCTGGAAGG+AGG | + | chr1_1:72098257-72098276 | Msa0041670:CDS | 45.0% | |
| ! | TTCCCAGTGTTTGGAGTGGA+AGG | - | chr1_1:72097060-72097079 | None:intergenic | 50.0% |
| CTTTGCGAACCCTTGAGGTA+TGG | + | chr1_1:72097617-72097636 | Msa0041670:CDS | 50.0% | |
| CACCCTCCTACATACACAGT+TGG | + | chr1_1:72097742-72097761 | Msa0041670:CDS | 50.0% | |
| GAACTTCACTGCACACAACG+TGG | + | chr1_1:72097826-72097845 | Msa0041670:CDS | 50.0% | |
| TACGGTGTGAAAGCTTCTCC+TGG | + | chr1_1:72097979-72097998 | Msa0041670:CDS | 50.0% | |
| GTGTGAAAGCTTCTCCTGGA+CGG | + | chr1_1:72097983-72098002 | Msa0041670:CDS | 50.0% | |
| AAGCATCCTCCTTCCAGATC+AGG | - | chr1_1:72098266-72098285 | None:intergenic | 50.0% | |
| ! | TTCCCAGTGTTTGGAGTGGA+AGG | - | chr1_1:72097060-72097079 | None:intergenic | 50.0% |
| CTTTGCGAACCCTTGAGGTA+TGG | + | chr1_1:72097617-72097636 | Msa0041670:CDS | 50.0% | |
| CACCCTCCTACATACACAGT+TGG | + | chr1_1:72097742-72097761 | Msa0041670:CDS | 50.0% | |
| GAACTTCACTGCACACAACG+TGG | + | chr1_1:72097826-72097845 | Msa0041670:CDS | 50.0% | |
| TACGGTGTGAAAGCTTCTCC+TGG | + | chr1_1:72097979-72097998 | Msa0041670:CDS | 50.0% | |
| GTGTGAAAGCTTCTCCTGGA+CGG | + | chr1_1:72097983-72098002 | Msa0041670:CDS | 50.0% | |
| AAGCATCCTCCTTCCAGATC+AGG | - | chr1_1:72098266-72098285 | None:intergenic | 50.0% | |
| CTTCACTGCACACAACGTGG+AGG | + | chr1_1:72097829-72097848 | Msa0041670:CDS | 55.0% | |
| ! | CTGGACGGAAGTGTGAGACA+GGG | + | chr1_1:72097998-72098017 | Msa0041670:CDS | 55.0% |
| ! | TGGACGGAAGTGTGAGACAG+GGG | + | chr1_1:72097999-72098018 | Msa0041670:CDS | 55.0% |
| ! | GAAGTGTGAGACAGGGGTGT+GGG | + | chr1_1:72098005-72098024 | Msa0041670:CDS | 55.0% |
| CTTCACTGCACACAACGTGG+AGG | + | chr1_1:72097829-72097848 | Msa0041670:CDS | 55.0% | |
| ! | CTGGACGGAAGTGTGAGACA+GGG | + | chr1_1:72097998-72098017 | Msa0041670:CDS | 55.0% |
| ! | TGGACGGAAGTGTGAGACAG+GGG | + | chr1_1:72097999-72098018 | Msa0041670:CDS | 55.0% |
| ! | GAAGTGTGAGACAGGGGTGT+GGG | + | chr1_1:72098005-72098024 | Msa0041670:CDS | 55.0% |
| GAGGGCTTTGCGAACCCTTG+AGG | + | chr1_1:72097612-72097631 | Msa0041670:CDS | 60.0% | |
| TCGCTTCGTGACACGGGACT+TGG | + | chr1_1:72097901-72097920 | Msa0041670:CDS | 60.0% | |
| CCTGTCTCACACTTCCGTCC+AGG | - | chr1_1:72098000-72098019 | None:intergenic | 60.0% | |
| ! | CCTGGACGGAAGTGTGAGAC+AGG | + | chr1_1:72097997-72098016 | Msa0041670:CDS | 60.0% |
| ! | GGAAGTGTGAGACAGGGGTG+TGG | + | chr1_1:72098004-72098023 | Msa0041670:CDS | 60.0% |
| ! | TGTGAGACAGGGGTGTGGGT+TGG | + | chr1_1:72098009-72098028 | Msa0041670:CDS | 60.0% |
| GAGGGCTTTGCGAACCCTTG+AGG | + | chr1_1:72097612-72097631 | Msa0041670:CDS | 60.0% | |
| TCGCTTCGTGACACGGGACT+TGG | + | chr1_1:72097901-72097920 | Msa0041670:CDS | 60.0% | |
| CCTGTCTCACACTTCCGTCC+AGG | - | chr1_1:72098000-72098019 | None:intergenic | 60.0% | |
| ! | CCTGGACGGAAGTGTGAGAC+AGG | + | chr1_1:72097997-72098016 | Msa0041670:CDS | 60.0% |
| ! | GGAAGTGTGAGACAGGGGTG+TGG | + | chr1_1:72098004-72098023 | Msa0041670:CDS | 60.0% |
| ! | TGTGAGACAGGGGTGTGGGT+TGG | + | chr1_1:72098009-72098028 | Msa0041670:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 72097052 | 72098521 | 72097052 | ID=Msa0041670;Name=Msa0041670 |
| chr1_1 | mRNA | 72097052 | 72098521 | 72097052 | ID=Msa0041670-mRNA-1;Parent=Msa0041670;Name=Msa0041670-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|204|301 |
| chr1_1 | exon | 72097052 | 72097246 | 72097052 | ID=Msa0041670-mRNA-1:exon:23970;Parent=Msa0041670-mRNA-1 |
| chr1_1 | exon | 72097607 | 72098521 | 72097607 | ID=Msa0041670-mRNA-1:exon:23971;Parent=Msa0041670-mRNA-1 |
| chr1_1 | CDS | 72097052 | 72097246 | 72097052 | ID=Msa0041670-mRNA-1:cds;Parent=Msa0041670-mRNA-1 |
| chr1_1 | CDS | 72097607 | 72098317 | 72097607 | ID=Msa0041670-mRNA-1:cds;Parent=Msa0041670-mRNA-1 |
| chr1_1 | three_prime_UTR | 72098318 | 72098521 | 72098318 | ID=Msa0041670-mRNA-1:three_prime_utr;Parent=Msa0041670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
