AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0518720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518720 MtrunA17_Chr3g0131031 97.727 528 12 0 1 528 1 528 0.0 1055
Msa0518720 MtrunA17_Chr8g0385271 83.172 517 82 1 12 523 7 523 0.0 875
Msa0518720 MtrunA17_Chr3g0135611 73.021 341 92 0 104 444 85 425 0.0 518
Msa0518720 MtrunA17_Chr4g0008821 64.232 397 136 2 48 444 38 428 1.30e-180 516
Msa0518720 MtrunA17_Chr4g0045871 89.706 68 7 0 407 474 5 72 8.35e-35 126
Msa0518720 MtrunA17_Chr7g0235891 65.217 46 16 0 393 438 88 133 6.84e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518720 AT2G30390.1 79.476 458 81 3 82 527 56 512 0.0 722
Msa0518720 AT2G30390.2 77.778 468 81 4 82 527 56 522 0.0 713
Msa0518720 AT5G26030.1 72.700 337 92 0 109 445 84 420 0.0 536
Msa0518720 AT5G26030.2 72.700 337 92 0 109 445 84 420 0.0 536

Find 136 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAATGTATTTACCTAAT+TGG 0.166560 3_4:+70559741 None:intergenic
TAGAATCTGGTATAGAAAAT+TGG 0.193496 3_4:-70559557 Msa0518720:CDS
CGTAGCCTTCTCTGCTCTTT+GGG 0.196098 3_4:+70562341 None:intergenic
CCCAGTTTGTATCTGTTCTA+AGG 0.205657 3_4:-70562366 Msa0518720:CDS
ATCACCTTAAAATTCACTTC+TGG 0.230721 3_4:-70564648 Msa0518720:five_prime_UTR
TGAAGAAAACTAAATATTCT+TGG 0.238006 3_4:+70562400 None:intergenic
CAGCATATGACTCGCAAAAT+AGG 0.241519 3_4:-70559111 Msa0518720:CDS
TCCCTTCACCCTTGCCTATC+AGG 0.242398 3_4:-70560008 Msa0518720:intron
GAATTCACTTATTTACTATA+TGG 0.251893 3_4:+70558668 None:intergenic
GCGTAGCCTTCTCTGCTCTT+TGG 0.271574 3_4:+70562340 None:intergenic
ACTATTGTCTCATCTGTATA+GGG 0.288809 3_4:+70559804 None:intergenic
TGTACGTTGGCATGCGTTAC+TGG 0.292975 3_4:-70561271 Msa0518720:CDS
TACGGAGGACGCTTGAAATT+AGG 0.301928 3_4:+70564466 None:intergenic
GAATATTATCGCCCTCTCTT+AGG 0.311916 3_4:-70558946 Msa0518720:CDS
AAACTTGTTGAGGCCTTGTT+TGG 0.314354 3_4:+70564574 None:intergenic
ACCCTCCTTCATTTCTGATT+TGG 0.315714 3_4:-70559508 Msa0518720:CDS
ACATATTGTGTAGATTAAAA+AGG 0.324340 3_4:-70560981 Msa0518720:intron
AGAATCTGGTATAGAAAATT+GGG 0.325244 3_4:-70559556 Msa0518720:CDS
CGGAAGTGTACAAGAGTTAT+TGG 0.329755 3_4:-70559134 Msa0518720:CDS
AACTATTGTCTCATCTGTAT+AGG 0.332380 3_4:+70559803 None:intergenic
CCCTTAGAACAGATACAAAC+TGG 0.345905 3_4:+70562365 None:intergenic
GTATGTTGGCTGTTCCAATT+AGG 0.349234 3_4:-70559755 Msa0518720:intron
TGATGTTGAATACAAAGAAT+TGG 0.365400 3_4:-70559583 Msa0518720:CDS
TCACCTTAAAATTCACTTCT+GGG 0.374549 3_4:-70564647 Msa0518720:five_prime_UTR
CACATCATGATTATGTCATC+TGG 0.376301 3_4:+70558714 None:intergenic
AAAAGTACACTACCTCTTTA+GGG 0.385426 3_4:+70560373 None:intergenic
AGACTTGAAGAAATCTCTTT+CGG 0.388879 3_4:-70561315 Msa0518720:CDS
AGAAGCGTTGTTGAGTGTAT+AGG 0.390375 3_4:+70564489 None:intergenic
AACTTGTTGAGGCCTTGTTT+GGG 0.390623 3_4:+70564575 None:intergenic
CTTTGGTTGGTTGGTTTACA+AGG 0.394618 3_4:+70564725 None:intergenic
TGGCTCAAGCTTACGTCTAC+TGG 0.395244 3_4:-70560900 Msa0518720:CDS
CGCCGGTGATAGTGTGGGAA+TGG 0.399628 3_4:-70559078 Msa0518720:CDS
AAAGAATTGGCTCTAGAATC+TGG 0.400419 3_4:-70559570 Msa0518720:CDS
GCCGGTGATAGTGTGGGAAT+GGG 0.419183 3_4:-70559077 Msa0518720:CDS
GTATTACCGGGTCTGCAAAA+AGG 0.425292 3_4:+70562749 None:intergenic
AGCATATGACTCGCAAAATA+GGG 0.434303 3_4:-70559110 Msa0518720:CDS
TGCACATCTTCTAGAGTCTC+TGG 0.435104 3_4:+70562787 None:intergenic
ACTGCCATGGCACCAGCATA+TGG 0.437930 3_4:+70559462 None:intergenic
CTTACATCTGATGATAAGAT+TGG 0.439061 3_4:-70562835 Msa0518720:CDS
TCCTCCATCTCTGCCTTGTA+AGG 0.440499 3_4:+70560079 None:intergenic
TTTAGTAGCTCGAACAGATC+AGG 0.450862 3_4:-70562875 Msa0518720:CDS
CACTGAGGAAGCTATTGAAC+AGG 0.452384 3_4:-70561240 Msa0518720:intron
TAGGAGGCGGAAGAAGTAGA+AGG 0.462934 3_4:+70564508 None:intergenic
TGGGGTGCCTCTTGCTTATG+TGG 0.465776 3_4:-70560116 Msa0518720:CDS
TTCTTCTTACAGAGTAGAGT+TGG 0.465830 3_4:-70559846 Msa0518720:intron
AGCACACAGTATTACCTTCA+TGG 0.466392 3_4:-70560464 Msa0518720:CDS
CCAGTTTGTATCTGTTCTAA+GGG 0.466703 3_4:-70562365 Msa0518720:CDS
CAAAATTTCAATATTGTGCA+AGG 0.474841 3_4:+70558817 None:intergenic
TGGGGCCGTGTTCCTGCTCT+AGG 0.479445 3_4:-70559537 Msa0518720:CDS
AGAGAAGGCTACGCTTCAAT+TGG 0.484687 3_4:-70562331 Msa0518720:CDS
TCAACGTGAAGGATACATAA+AGG 0.485704 3_4:-70560439 Msa0518720:CDS
ATTGAAAATTGTGGATAAAG+TGG 0.485887 3_4:+70560932 None:intergenic
ATGCCAACGTACACTTCAGC+AGG 0.486817 3_4:+70561281 None:intergenic
GGAGTTTGAAGCTTCATAGC+TGG 0.489093 3_4:+70564550 None:intergenic
TTGAAAATTGTGGATAAAGT+GGG 0.490648 3_4:+70560933 None:intergenic
AAAAGGAGTGAAAAGTATGT+TGG 0.492369 3_4:-70559769 Msa0518720:CDS
TAGACGTAAGCTTGAGCCAC+TGG 0.492475 3_4:+70560904 None:intergenic
GCCTCTTGCTTATGTGGAAG+AGG 0.493969 3_4:-70560110 Msa0518720:CDS
CTCCACTGTCTTTGAGAGCA+TGG 0.495279 3_4:+70558909 None:intergenic
TCAATAGCTTCCTCAGTGAA+TGG 0.508166 3_4:+70561245 None:intergenic
CTTCTGCTCTGGAGCTCATG+TGG 0.509145 3_4:-70563022 Msa0518720:CDS
TTCAAGCCTCGAAGCTCGAC+AGG 0.509317 3_4:-70559439 Msa0518720:intron
TGTGCAAGGGAATGACTTGA+TGG 0.510991 3_4:+70558831 None:intergenic
GGTGATAACGTGGCATGAGT+TGG 0.511540 3_4:+70564529 None:intergenic
ATCTGCCAAATCAGAAATGA+AGG 0.511624 3_4:+70559503 None:intergenic
AGAATACCTGTCGAGCTTCG+AGG 0.516022 3_4:+70559433 None:intergenic
TACCTGATAGGCAAGGGTGA+AGG 0.519996 3_4:+70560006 None:intergenic
GCGATCTGAAGCAAAACCCT+TGG 0.524130 3_4:-70562941 Msa0518720:CDS
GAAGGCTACGCTTCAATTGG+TGG 0.524264 3_4:-70562328 Msa0518720:CDS
CCCCATTCCCACACTATCAC+CGG 0.525373 3_4:+70559076 None:intergenic
ACCTGATAGGCAAGGGTGAA+GGG 0.530104 3_4:+70560007 None:intergenic
CTCTGCCTTGTAAGGATCAC+CGG 0.531288 3_4:+70560087 None:intergenic
TGGCAGTCTTTGGTTCCGCT+CGG 0.531313 3_4:-70559154 Msa0518720:intron
GTCTACTGGAGAGTATATTC+CGG 0.534732 3_4:-70560886 Msa0518720:intron
GCATCAGTTATACGTCTAAG+AGG 0.534824 3_4:+70562298 None:intergenic
GGAGTGTTATTGCTAAACCT+TGG 0.534970 3_4:-70562814 Msa0518720:CDS
GTGTTATTGCTAAACCTTGG+AGG 0.536763 3_4:-70562811 Msa0518720:CDS
CTGCCATGGCACCAGCATAT+GGG 0.537209 3_4:+70559463 None:intergenic
CTAGAGTCTCTGGACCTCCA+AGG 0.539949 3_4:+70562797 None:intergenic
CTTGCTTATGTGGAAGAGGC+CGG 0.540854 3_4:-70560106 Msa0518720:CDS
GATGAGACAATAGTTGAACT+TGG 0.541880 3_4:-70559795 Msa0518720:CDS
TGCCATCGCCGGTGATAGTG+TGG 0.545471 3_4:-70559084 Msa0518720:CDS
CACATGAGCTCCAGAGCAGA+AGG 0.547619 3_4:+70563023 None:intergenic
TGATCCTTACAAGGCAGAGA+TGG 0.558244 3_4:-70560083 Msa0518720:CDS
GTAGCCTTCTCTGCTCTTTG+GGG 0.559986 3_4:+70562342 None:intergenic
CTGCTCTGGAGCTCATGTGG+AGG 0.561511 3_4:-70563019 Msa0518720:CDS
AGGGCCCCAAAGAGCAGAGA+AGG 0.564829 3_4:-70562346 Msa0518720:CDS
GAGGGTTCACATCCTAGAGC+AGG 0.569494 3_4:+70559525 None:intergenic
AAAAGTGCTGAAACTTGGAA+TGG 0.570829 3_4:-70559046 Msa0518720:CDS
AGTGATTGGTTGGAAACCAA+GGG 0.571366 3_4:+70562925 None:intergenic
AAAATTTCAATATTGTGCAA+GGG 0.574118 3_4:+70558818 None:intergenic
AAAGGATGGAGTTACAAAGC+TGG 0.574958 3_4:-70560963 Msa0518720:CDS
CTTTCTATAGCACCCAAACA+AGG 0.575486 3_4:-70564587 Msa0518720:five_prime_UTR
AACCAAAGGTCGAAAAGCAA+AGG 0.577475 3_4:-70564710 Msa0518720:five_prime_UTR
GGAATGTGTGGATTTGATCA+TGG 0.578572 3_4:-70560059 Msa0518720:CDS
GGCTACGCTTCAATTGGTGG+TGG 0.579463 3_4:-70562325 Msa0518720:CDS
ACAGATACAAACTGGGCCAA+TGG 0.580157 3_4:+70562373 None:intergenic
GGCAGAGATGGAGGAATGTG+TGG 0.580461 3_4:-70560071 Msa0518720:CDS
AAATAGGGAGTTGCCATCGC+CGG 0.581354 3_4:-70559095 Msa0518720:CDS
CTGGTTGATATTGAAAATTG+TGG 0.582519 3_4:+70560923 None:intergenic
GAGTGATTGGTTGGAAACCA+AGG 0.584680 3_4:+70562924 None:intergenic
TAGACGTATAACTGATGCAC+AGG 0.586568 3_4:-70562293 Msa0518720:intron
AGAGGCCGGTGATCCTTACA+AGG 0.588173 3_4:-70560092 Msa0518720:CDS
TCTCCCATATGCTGGTGCCA+TGG 0.590481 3_4:-70559466 Msa0518720:CDS
ATTGAAAGTCTCCCATATGC+TGG 0.593938 3_4:-70559474 Msa0518720:CDS
TTCGAGGCTTGAAACTGCCA+TGG 0.598287 3_4:+70559449 None:intergenic
CCGGTGATAGTGTGGGAATG+GGG 0.604868 3_4:-70559076 Msa0518720:CDS
AGATTCATTCACCTAAGAGA+GGG 0.609385 3_4:+70558935 None:intergenic
TCCCACACTATCACCGGCGA+TGG 0.610674 3_4:+70559082 None:intergenic
GTTGTTGAGTGTATAGGAGG+CGG 0.610694 3_4:+70564495 None:intergenic
GTAGAGTTGGACCTGTGGAA+TGG 0.613496 3_4:-70559833 Msa0518720:CDS
CCTTCACGTTGATACCATGA+AGG 0.613635 3_4:+70560450 None:intergenic
TCCTTACAAGGCAGAGATGG+AGG 0.613774 3_4:-70560080 Msa0518720:CDS
GAGATTCATTCACCTAAGAG+AGG 0.614460 3_4:+70558934 None:intergenic
CATAGCTGGAAAACTTGTTG+AGG 0.616636 3_4:+70564564 None:intergenic
ATGACATAATCATGATGTGA+TGG 0.618035 3_4:-70558710 Msa0518720:three_prime_UTR
AGCGTTGTTGAGTGTATAGG+AGG 0.618477 3_4:+70564492 None:intergenic
GCCTCTTCCACATAAGCAAG+AGG 0.629638 3_4:+70560109 None:intergenic
CACATCCTAGAGCAGGAACA+CGG 0.630017 3_4:+70559532 None:intergenic
CCTTCATGGTATCAACGTGA+AGG 0.631668 3_4:-70560450 Msa0518720:CDS
AGGGCGATAATATTCCCCAT+TGG 0.635517 3_4:+70558954 None:intergenic
TGCCAAATCAGAAATGAAGG+AGG 0.636616 3_4:+70559506 None:intergenic
CCTTAGAACAGATACAAACT+GGG 0.637491 3_4:+70562366 None:intergenic
GCCAAATCAGAAATGAAGGA+GGG 0.639074 3_4:+70559507 None:intergenic
TGGTTGGTTGGTTTACAAGG+AGG 0.641028 3_4:+70564728 None:intergenic
AACCATGCTCTCAAAGACAG+TGG 0.641416 3_4:-70558911 Msa0518720:three_prime_UTR
GCCATCGCCGGTGATAGTGT+GGG 0.643544 3_4:-70559083 Msa0518720:CDS
CTTGTAAACCAACCAACCAA+AGG 0.644255 3_4:-70564724 Msa0518720:five_prime_UTR
TGAGAGGTACAGATTGCCTG+TGG 0.666000 3_4:+70563054 None:intergenic
ACAGAGTAGAGTTGGACCTG+TGG 0.670362 3_4:-70559838 Msa0518720:intron
GAATCTGGTATAGAAAATTG+GGG 0.677200 3_4:-70559555 Msa0518720:CDS
GTCCCTGCTGAAGTGTACGT+TGG 0.678902 3_4:-70561284 Msa0518720:CDS
TGCCAACGTACACTTCAGCA+GGG 0.687637 3_4:+70561282 None:intergenic
AACTCTTGTACACTTCCGAG+CGG 0.698633 3_4:+70559139 None:intergenic
AGAAGTAGAAGGTGATAACG+TGG 0.709400 3_4:+70564519 None:intergenic
TTACTGGCATCCATTCACTG+AGG 0.806235 3_4:-70561255 Msa0518720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTCTTCAAATATATA+AGG - chr3_4:70562554-70562573 Msa0518720:intron 10.0%
!! AATATTCTTCAAATATATAA+GGG - chr3_4:70562555-70562574 Msa0518720:intron 10.0%
!! GAATTGTTATAAAAATTAGT+TGG - chr3_4:70559360-70559379 Msa0518720:intron 15.0%
!!! ATGAATAAATAATCATTTTC+CGG - chr3_4:70559838-70559857 Msa0518720:intron 15.0%
!!! TATATTATATTTACTTTTGC+AGG - chr3_4:70560311-70560330 Msa0518720:intron 15.0%
!! AAAAAATAAATAACAGAAAG+TGG + chr3_4:70561131-70561150 None:intergenic 15.0%
!! AAATATAAGTCATAATCAAA+AGG + chr3_4:70561156-70561175 None:intergenic 15.0%
!!! ATTATTAACATGATTGATTT+TGG + chr3_4:70561480-70561499 None:intergenic 15.0%
!! TTAATAATCAGAATAATATG+TGG - chr3_4:70561492-70561511 Msa0518720:intron 15.0%
!! ATAGGAAAATAATTATAATC+AGG + chr3_4:70562389-70562408 None:intergenic 15.0%
!! TTATGATTTGAATTATGAAT+TGG - chr3_4:70562873-70562892 Msa0518720:CDS 15.0%
!!! TTTTTCAATTAAATTTGACA+TGG + chr3_4:70562981-70563000 None:intergenic 15.0%
!!! TTTTTTTTTTTGGCATAAAT+TGG + chr3_4:70563089-70563108 None:intergenic 15.0%
!!! AAACAACACATTTTTTTTTT+TGG + chr3_4:70563099-70563118 None:intergenic 15.0%
!!! AATTGAAAGTATATTATCTT+TGG - chr3_4:70564220-70564239 Msa0518720:intron 15.0%
!!! ATTACTTTGACTTTTTTTTA+AGG + chr3_4:70564645-70564664 None:intergenic 15.0%
!! AAAAAAAAGATAGTAGTAGT+TGG - chr3_4:70558709-70558728 Msa0518720:three_prime_UTR 20.0%
!! AAAAAAAGATAGTAGTAGTT+GGG - chr3_4:70558710-70558729 Msa0518720:three_prime_UTR 20.0%
!!! ATAACAAAAATAAGAGTGTA+TGG - chr3_4:70559048-70559067 Msa0518720:CDS 20.0%
!! TGTTTGGATTATAGAATAAA+TGG - chr3_4:70559312-70559331 Msa0518720:intron 20.0%
!! AAATTAGTTGGTTAGATAAT+TGG - chr3_4:70559372-70559391 Msa0518720:intron 20.0%
!! AGATCAAAATGTTAAGTTTA+TGG + chr3_4:70559661-70559680 None:intergenic 20.0%
!! AAAAGTAACTTCATAATCAT+CGG + chr3_4:70559710-70559729 None:intergenic 20.0%
!!! ATGATTATGAAGTTACTTTT+TGG - chr3_4:70559710-70559729 Msa0518720:intron 20.0%
!! TGTAAAATTGTAAGTTAATC+AGG - chr3_4:70559737-70559756 Msa0518720:intron 20.0%
!! TGATAATTAGTGATAAAATG+TGG + chr3_4:70560267-70560286 None:intergenic 20.0%
!!! CATTTTATCACTAATTATCA+AGG - chr3_4:70560267-70560286 Msa0518720:intron 20.0%
!! GCAAAAAGGTTAAATAAAAA+AGG + chr3_4:70560634-70560653 None:intergenic 20.0%
!! TGAAGAAAACTAAATATTCT+TGG + chr3_4:70560997-70561016 None:intergenic 20.0%
!! ATTCATGATGAACAAATATT+TGG - chr3_4:70561527-70561546 Msa0518720:intron 20.0%
!!! TAAAAAGGTTTGGTTAATAT+GGG + chr3_4:70561728-70561747 None:intergenic 20.0%
!! CAATTAAAAGTGATCTAAAA+AGG + chr3_4:70561743-70561762 None:intergenic 20.0%
!!! CTTTTTAGATCACTTTTAAT+TGG - chr3_4:70561741-70561760 Msa0518720:intron 20.0%
!!! TGCTTTGTAATCTAAAATAA+AGG - chr3_4:70562301-70562320 Msa0518720:CDS 20.0%
!! ACATATTGTGTAGATTAAAA+AGG - chr3_4:70562413-70562432 Msa0518720:CDS 20.0%
!! ATTTGAAGAATATTTAACGT+GGG + chr3_4:70562549-70562568 None:intergenic 20.0%
!! TATTTGAAGAATATTTAACG+TGG + chr3_4:70562550-70562569 None:intergenic 20.0%
!! AGAAAAAAAAATTACCTGAT+AGG + chr3_4:70563403-70563422 None:intergenic 20.0%
!! ATCTTTAGATGTTATTCATT+AGG - chr3_4:70563464-70563483 Msa0518720:intron 20.0%
!!! TCTTTTCAATTAGATATAGT+TGG - chr3_4:70563981-70564000 Msa0518720:intron 20.0%
!! TATCATATTCATATGTTTCA+TGG + chr3_4:70564077-70564096 None:intergenic 20.0%
!!! TTGTAGTATTTGATCTATTT+TGG - chr3_4:70564129-70564148 Msa0518720:intron 20.0%
!! TGGAATTAATCTTTCTAATA+TGG - chr3_4:70564149-70564168 Msa0518720:intron 20.0%
!! GGAATTAATCTTTCTAATAT+GGG - chr3_4:70564150-70564169 Msa0518720:intron 20.0%
!! GAATTAATCTTTCTAATATG+GGG - chr3_4:70564151-70564170 Msa0518720:intron 20.0%
!! ATTAAAAACCTATATACTGA+AGG + chr3_4:70564536-70564555 None:intergenic 20.0%
!! AAAATTTCAATATTGTGCAA+GGG + chr3_4:70564579-70564598 None:intergenic 20.0%
!! GAATTCACTTATTTACTATA+TGG + chr3_4:70564729-70564748 None:intergenic 20.0%
! ACAATTCAACTTACATTGTA+TGG - chr3_4:70559229-70559248 Msa0518720:intron 25.0%
!!! TAATTGGTTAGTTTGTTATG+TGG - chr3_4:70559388-70559407 Msa0518720:intron 25.0%
!! CTATTTAAAGACTTGCTTAT+AGG + chr3_4:70559450-70559469 None:intergenic 25.0%
!!! TTTCTTTGGAATTCAATTGT+TGG - chr3_4:70559604-70559623 Msa0518720:CDS 25.0%
!!! TTCTTTGGAATTCAATTGTT+GGG - chr3_4:70559605-70559624 Msa0518720:CDS 25.0%
!!! ACTTAACATTTTGATCTATC+AGG - chr3_4:70559664-70559683 Msa0518720:intron 25.0%
! AATTGTAAGTTAATCAGGTT+AGG - chr3_4:70559742-70559761 Msa0518720:intron 25.0%
! ATATTCAAGCACTAATTTAC+CGG - chr3_4:70559951-70559970 Msa0518720:intron 25.0%
!!! ATGGATTTTTTTTCTTGAGA+TGG + chr3_4:70559984-70560003 None:intergenic 25.0%
! TGTTAAGGAGAAATATTTGT+TGG - chr3_4:70561452-70561471 Msa0518720:intron 25.0%
! ATAATCAGAATAATATGTGG+AGG - chr3_4:70561495-70561514 Msa0518720:intron 25.0%
! GAAGATAGAGAAGTAATTAA+GGG + chr3_4:70561595-70561614 None:intergenic 25.0%
! AGAAGATAGAGAAGTAATTA+AGG + chr3_4:70561596-70561615 None:intergenic 25.0%
! CTATATATAGAGAGAAGTTA+TGG + chr3_4:70561671-70561690 None:intergenic 25.0%
!! CTAAAAAGGTTTGGTTAATA+TGG + chr3_4:70561729-70561748 None:intergenic 25.0%
! AAAAGTGATCTAAAAAGGTT+TGG + chr3_4:70561738-70561757 None:intergenic 25.0%
! TTAAAATACAAGTCCAATGT+TGG - chr3_4:70561800-70561819 Msa0518720:intron 25.0%
! CGGTAAAATTAAATTGCTTT+CGG + chr3_4:70561850-70561869 None:intergenic 25.0%
! CAATATAAAAATGCAAGAAG+CGG + chr3_4:70561870-70561889 None:intergenic 25.0%
! AATCATTTCAATCAAGCTTT+CGG - chr3_4:70561912-70561931 Msa0518720:intron 25.0%
! AGGTAATAATAGAATGAATG+AGG + chr3_4:70562025-70562044 None:intergenic 25.0%
! TCTACACAATATGTTTCAAT+AGG + chr3_4:70562407-70562426 None:intergenic 25.0%
! ATTGTGTAGATTAAAAAGGA+TGG - chr3_4:70562417-70562436 Msa0518720:CDS 25.0%
! TTGAAAATTGTGGATAAAGT+GGG + chr3_4:70562464-70562483 None:intergenic 25.0%
! ATTGAAAATTGTGGATAAAG+TGG + chr3_4:70562465-70562484 None:intergenic 25.0%
! CTAAAACCTTAGAAACTTAA+AGG + chr3_4:70562659-70562678 None:intergenic 25.0%
!!! AAGTTTCTAAGGTTTTAGAT+AGG - chr3_4:70562661-70562680 Msa0518720:intron 25.0%
! GAAGTTTGATGCTTATATAT+TGG + chr3_4:70562850-70562869 None:intergenic 25.0%
!! GATTCATGTGATAACAATTT+TGG - chr3_4:70563126-70563145 Msa0518720:intron 25.0%
!!! ATGATATTTTTTAGTGCACA+TGG - chr3_4:70563258-70563277 Msa0518720:intron 25.0%
!!! TGATATTTTTTAGTGCACAT+GGG - chr3_4:70563259-70563278 Msa0518720:intron 25.0%
! ATAGTTGAACTTGGAAAAAA+AGG - chr3_4:70563608-70563627 Msa0518720:intron 25.0%
! AACAAAACAAAATACTAGTC+AGG + chr3_4:70563728-70563747 None:intergenic 25.0%
! TGATGTTGAATACAAAGAAT+TGG - chr3_4:70563811-70563830 Msa0518720:intron 25.0%
! TAGAATCTGGTATAGAAAAT+TGG - chr3_4:70563837-70563856 Msa0518720:intron 25.0%
! AGAATCTGGTATAGAAAATT+GGG - chr3_4:70563838-70563857 Msa0518720:intron 25.0%
!!! TTGTTTTAGTCTCAAAAGAT+CGG - chr3_4:70564041-70564060 Msa0518720:intron 25.0%
! ACAAGACTAAAACTAAAACA+AGG + chr3_4:70564113-70564132 None:intergenic 25.0%
! AACATGTTTGTTTAAATCTC+TGG - chr3_4:70564174-70564193 Msa0518720:intron 25.0%
!! TGATAGTATTTTTCACCAAT+GGG - chr3_4:70564425-70564444 Msa0518720:intron 25.0%
!!! ATTTTGATCCTTCAGTATAT+AGG - chr3_4:70564525-70564544 Msa0518720:CDS 25.0%
! CAAAATTTCAATATTGTGCA+AGG + chr3_4:70564580-70564599 None:intergenic 25.0%
!! TGCACAATATTGAAATTTTG+AGG - chr3_4:70564580-70564599 Msa0518720:five_prime_UTR 25.0%
!! GCACAATATTGAAATTTTGA+GGG - chr3_4:70564581-70564600 Msa0518720:five_prime_UTR 25.0%
!! CACAATATTGAAATTTTGAG+GGG - chr3_4:70564582-70564601 Msa0518720:five_prime_UTR 25.0%
ATCACCTTAAAATTCACTTC+TGG - chr3_4:70558746-70558765 Msa0518720:three_prime_UTR 30.0%
TCACCTTAAAATTCACTTCT+GGG - chr3_4:70558747-70558766 Msa0518720:three_prime_UTR 30.0%
CATTGTAAATGGAAGACTTA+CGG + chr3_4:70558949-70558968 None:intergenic 30.0%
TGAGAAAACAGCTTATAACA+TGG + chr3_4:70559074-70559093 None:intergenic 30.0%
!!! TTTCTCACTAGTTTTTAGCT+TGG - chr3_4:70559087-70559106 Msa0518720:CDS 30.0%
AAAAGATTAAGGACCAAGTT+TGG + chr3_4:70559138-70559157 None:intergenic 30.0%
! AACTTGGTCCTTAATCTTTT+TGG - chr3_4:70559138-70559157 Msa0518720:CDS 30.0%
GTTGGATTCCAAAAAGATTA+AGG + chr3_4:70559149-70559168 None:intergenic 30.0%
! TTGTATGGTAAGTTTTCCTT+CGG - chr3_4:70559244-70559263 Msa0518720:intron 30.0%
!! ACAAAGAGTACTTGATTCTA+AGG + chr3_4:70559276-70559295 None:intergenic 30.0%
! TAAAGTGCTCTTTCTTTCTT+TGG - chr3_4:70559590-70559609 Msa0518720:CDS 30.0%
TTAGGATACAATACTGAGTA+TGG - chr3_4:70559760-70559779 Msa0518720:CDS 30.0%
CTAAATGTGTGAAAAGAAAC+CGG + chr3_4:70559860-70559879 None:intergenic 30.0%
ATTCTCTGATATTTCAGCAA+TGG - chr3_4:70559881-70559900 Msa0518720:intron 30.0%
TTCGTATGTTTAGAGAAAAG+GGG + chr3_4:70560059-70560078 None:intergenic 30.0%
CTTCGTATGTTTAGAGAAAA+GGG + chr3_4:70560060-70560079 None:intergenic 30.0%
!! AAAAAGCACATGTTTTCAGT+GGG - chr3_4:70560493-70560512 Msa0518720:CDS 30.0%
CTTACATCTGATGATAAGAT+TGG - chr3_4:70560559-70560578 Msa0518720:intron 30.0%
! TGTAAAAGCTAGAGTATTAC+CGG + chr3_4:70560661-70560680 None:intergenic 30.0%
TTTACAGTGTTGTCAAATAG+TGG - chr3_4:70560704-70560723 Msa0518720:intron 30.0%
ACAGCAAAAATGACAATCTT+AGG + chr3_4:70560924-70560943 None:intergenic 30.0%
! TATTTTATGTCCAATCTCAC+AGG - chr3_4:70560957-70560976 Msa0518720:CDS 30.0%
! TAGTTTTCTTCAAAAGCCAT+TGG - chr3_4:70561005-70561024 Msa0518720:intron 30.0%
TGAACTAATCATGTTTGAGT+AGG - chr3_4:70561221-70561240 Msa0518720:intron 30.0%
GAAAGAATAGCACAATGATA+TGG - chr3_4:70561339-70561358 Msa0518720:intron 30.0%
TAACAGTTACTGCATAAAAG+TGG + chr3_4:70561437-70561456 None:intergenic 30.0%
! CTTTTATGCAGTAACTGTTA+AGG - chr3_4:70561437-70561456 Msa0518720:intron 30.0%
CATGATGAACAAATATTTGG+TGG - chr3_4:70561530-70561549 Msa0518720:intron 30.0%
! TGAACAAATATTTGGTGGTT+TGG - chr3_4:70561535-70561554 Msa0518720:intron 30.0%
TCTCTATCTTCTTCTGATAT+AGG - chr3_4:70561604-70561623 Msa0518720:intron 30.0%
ATAAGTATCTAATAGGGTGT+GGG + chr3_4:70561702-70561721 None:intergenic 30.0%
TATAAGTATCTAATAGGGTG+TGG + chr3_4:70561703-70561722 None:intergenic 30.0%
GGGCTTATAAGTATCTAATA+GGG + chr3_4:70561708-70561727 None:intergenic 30.0%
TGGGCTTATAAGTATCTAAT+AGG + chr3_4:70561709-70561728 None:intergenic 30.0%
TAATTGGACTTCAACTTAAG+TGG - chr3_4:70561757-70561776 Msa0518720:intron 30.0%
TGAAATGATTGGAAAGAGTA+AGG + chr3_4:70561902-70561921 None:intergenic 30.0%
GAAAGCTTGATTGAAATGAT+TGG + chr3_4:70561913-70561932 None:intergenic 30.0%
AGTCAATAGTAGAATCTCAT+CGG + chr3_4:70561952-70561971 None:intergenic 30.0%
AGACTTGAAGAAATCTCTTT+CGG - chr3_4:70562079-70562098 Msa0518720:intron 30.0%
! CTGGTTGATATTGAAAATTG+TGG + chr3_4:70562474-70562493 None:intergenic 30.0%
! CAATTTTCAATATCAACCAG+TGG - chr3_4:70562474-70562493 Msa0518720:intron 30.0%
TGGGTAATAAAAGTAATCAC+CGG + chr3_4:70562530-70562549 None:intergenic 30.0%
GTTACAAACGTGAAACTTAA+AGG + chr3_4:70562806-70562825 None:intergenic 30.0%
! ATAGGTCCTTTAAGTTTCAA+AGG - chr3_4:70562621-70562640 Msa0518720:intron 30.0%
!! CTGTAACCTTTGAAACTTAA+AGG + chr3_4:70562775-70562794 None:intergenic 30.0%
AAGTTTCAAAGGTTACAGAT+AGG - chr3_4:70562632-70562651 Msa0518720:intron 30.0%
! ATAGGTCCTTTAAGTTTCTA+AGG - chr3_4:70562650-70562669 Msa0518720:intron 30.0%
GAAACAAACTCGAAACTTAA+AGG + chr3_4:70562688-70562707 None:intergenic 30.0%
!! AACTTTCTAAGGTTTCAGAT+AGG + chr3_4:70562744-70562763 None:intergenic 30.0%
CTGAAACCTTAGAAAGTTAA+AGG - chr3_4:70562746-70562765 Msa0518720:intron 30.0%
! ATAGGTCCTTTAACTTTCTA+AGG + chr3_4:70562755-70562774 None:intergenic 30.0%
AAGTTTCAAAGGTTACAGAT+AGG + chr3_4:70562632-70562651 None:intergenic 30.0%
!! CTGTAACCTTTGAAACTTAA+AGG - chr3_4:70562775-70562794 Msa0518720:CDS 30.0%
! ATAGGTCCTTTAAGTTTCAA+AGG + chr3_4:70562621-70562640 None:intergenic 30.0%
GTTACAAACGTGAAACTTAA+AGG - chr3_4:70562806-70562825 Msa0518720:CDS 30.0%
! AAAAGTACACTACCTCTTTA+GGG + chr3_4:70563024-70563043 None:intergenic 30.0%
! AAAAAGTACACTACCTCTTT+AGG + chr3_4:70563025-70563044 None:intergenic 30.0%
! TATTCCTGTTTCTCTTTGTT+TGG - chr3_4:70563150-70563169 Msa0518720:intron 30.0%
! ATTCCTGTTTCTCTTTGTTT+GGG - chr3_4:70563151-70563170 Msa0518720:intron 30.0%
! TAATTCCAAGTAATTTGTGC+AGG - chr3_4:70563233-70563252 Msa0518720:intron 30.0%
!!! GATATTTTTTAGTGCACATG+GGG - chr3_4:70563260-70563279 Msa0518720:intron 30.0%
AAAAATTACCTGATAGGCAA+GGG + chr3_4:70563397-70563416 None:intergenic 30.0%
AAAAAATTACCTGATAGGCA+AGG + chr3_4:70563398-70563417 None:intergenic 30.0%
! AACAGTTCATGAAGTTTTCT+TGG - chr3_4:70563499-70563518 Msa0518720:intron 30.0%
ACTATTGTCTCATCTGTATA+GGG + chr3_4:70563593-70563612 None:intergenic 30.0%
AACTATTGTCTCATCTGTAT+AGG + chr3_4:70563594-70563613 None:intergenic 30.0%
! AAAAGGAGTGAAAAGTATGT+TGG - chr3_4:70563625-70563644 Msa0518720:intron 30.0%
!!! TTTTGTTTTGTTAACTCGTG+CGG - chr3_4:70563736-70563755 Msa0518720:intron 30.0%
GAATCTGGTATAGAAAATTG+GGG - chr3_4:70563839-70563858 Msa0518720:intron 30.0%
!! TTGTTTAAATCTCTGGAATC+TGG - chr3_4:70564181-70564200 Msa0518720:intron 30.0%
ATATTATCTTTGGCAGTCTT+TGG - chr3_4:70564230-70564249 Msa0518720:intron 30.0%
CATTGGTGAAAAATACTATC+AGG + chr3_4:70564426-70564445 None:intergenic 30.0%
! CTGATAGTATTTTTCACCAA+TGG - chr3_4:70564424-70564443 Msa0518720:intron 30.0%
! GATAGTATTTTTCACCAATG+GGG - chr3_4:70564426-70564445 Msa0518720:intron 30.0%
ATGACATAATCATGATGTGA+TGG - chr3_4:70564684-70564703 Msa0518720:five_prime_UTR 30.0%
! GAACCCAGAAGTGAATTTTA+AGG + chr3_4:70558753-70558772 None:intergenic 35.0%
CATGAGAGTCACATTGTAAA+TGG + chr3_4:70558960-70558979 None:intergenic 35.0%
!!! TCACTAGTTTTTAGCTTGGT+TGG - chr3_4:70559091-70559110 Msa0518720:CDS 35.0%
CAACTAAGCTAATCCAAACT+TGG - chr3_4:70559122-70559141 Msa0518720:CDS 35.0%
AGGGAAGAAATAGAACATGT+TGG + chr3_4:70559167-70559186 None:intergenic 35.0%
! TGTTCTATTTCTTCCCTAGA+AGG - chr3_4:70559170-70559189 Msa0518720:intron 35.0%
! GTTCTATTTCTTCCCTAGAA+GGG - chr3_4:70559171-70559190 Msa0518720:intron 35.0%
CATGTTATGAATCCCTTCTA+GGG + chr3_4:70559186-70559205 None:intergenic 35.0%
TCTATGTCAAGTCTACTGTT+TGG - chr3_4:70559296-70559315 Msa0518720:intron 35.0%
TTATGGTCACAATACAACAC+AGG + chr3_4:70559644-70559663 None:intergenic 35.0%
TAATCATCGGTAGTTGTTAC+TGG + chr3_4:70559697-70559716 None:intergenic 35.0%
CATTGGATCTTTATAGAGCA+CGG + chr3_4:70559800-70559819 None:intergenic 35.0%
CTCGAAAAGAAGCTATACAT+TGG + chr3_4:70559817-70559836 None:intergenic 35.0%
! CAATGTATAGCTTCTTTTCG+AGG - chr3_4:70559815-70559834 Msa0518720:CDS 35.0%
CTGATATTTCAGCAATGGAT+AGG - chr3_4:70559886-70559905 Msa0518720:intron 35.0%
! TTCTTGAGATGGATTTGAAC+CGG + chr3_4:70559973-70559992 None:intergenic 35.0%
GCTTCGTATGTTTAGAGAAA+AGG + chr3_4:70560061-70560080 None:intergenic 35.0%
TGTGGCATAAAAAATGCATG+AGG + chr3_4:70560249-70560268 None:intergenic 35.0%
! GCTGCTATGTAATTTTTCAC+AGG + chr3_4:70560418-70560437 None:intergenic 35.0%
!!! ACATGTGCTTTTTGAGTGAT+TGG + chr3_4:70560486-70560505 None:intergenic 35.0%
!! CAAAAAGCACATGTTTTCAG+TGG - chr3_4:70560492-70560511 Msa0518720:CDS 35.0%
! ATTTAACCTTTTTGCAGACC+CGG - chr3_4:70560639-70560658 Msa0518720:intron 35.0%
! GTAAAAGCTAGAGTATTACC+GGG + chr3_4:70560660-70560679 None:intergenic 35.0%
ACAATGCTATAGCTGCTATT+TGG + chr3_4:70560808-70560827 None:intergenic 35.0%
! TTTTATCCCGCTATTCCTTT+AGG - chr3_4:70560888-70560907 Msa0518720:CDS 35.0%
CGTATAATATCCTGTGAGAT+TGG + chr3_4:70560970-70560989 None:intergenic 35.0%
CCTTAGAACAGATACAAACT+GGG + chr3_4:70561031-70561050 None:intergenic 35.0%
CCAGTTTGTATCTGTTCTAA+GGG - chr3_4:70561029-70561048 Msa0518720:intron 35.0%
AGAATAGCACAATGATATGG+CGG - chr3_4:70561342-70561361 Msa0518720:intron 35.0%
TCTCTCTATATATAGAACCC+TGG - chr3_4:70561676-70561695 Msa0518720:intron 35.0%
TTGGATCATCAATCCAACAT+TGG + chr3_4:70561816-70561835 None:intergenic 35.0%
GCTTTCGGAGTAAATATTGT+TGG + chr3_4:70561835-70561854 None:intergenic 35.0%
TTGATAAAGATTATGCCACC+AGG - chr3_4:70562226-70562245 Msa0518720:intron 35.0%
TGATAAAGATTATGCCACCA+GGG - chr3_4:70562227-70562246 Msa0518720:intron 35.0%
GTTTCACGTTTGTAACAGAT+AGG - chr3_4:70562603-70562622 Msa0518720:intron 35.0%
!! GTTTCGAGTTTGTTTCAGAT+AGG - chr3_4:70562692-70562711 Msa0518720:intron 35.0%
GTTTCACGTTTGTAACAGAT+AGG + chr3_4:70562603-70562622 None:intergenic 35.0%
TCAACGTGAAGGATACATAA+AGG - chr3_4:70562955-70562974 Msa0518720:CDS 35.0%
GAAGTCGTTGAAACTACATA+AGG + chr3_4:70563049-70563068 None:intergenic 35.0%
ATGTAGTTTCAACGACTTCA+TGG - chr3_4:70563050-70563069 Msa0518720:CDS 35.0%
AATCCCAAACAAAGAGAAAC+AGG + chr3_4:70563157-70563176 None:intergenic 35.0%
! TGAGTTGCATTTTTCATTGC+TGG - chr3_4:70563198-70563217 Msa0518720:intron 35.0%
TTCTTCTTACAGAGTAGAGT+TGG - chr3_4:70563548-70563567 Msa0518720:intron 35.0%
GATGAGACAATAGTTGAACT+TGG - chr3_4:70563599-70563618 Msa0518720:intron 35.0%
CTAGTCAGGTCTAAGAAAAA+GGG + chr3_4:70563714-70563733 None:intergenic 35.0%
ACTAGTCAGGTCTAAGAAAA+AGG + chr3_4:70563715-70563734 None:intergenic 35.0%
!! AAAGAATTGGCTCTAGAATC+TGG - chr3_4:70563824-70563843 Msa0518720:intron 35.0%
ATCTGCCAAATCAGAAATGA+AGG + chr3_4:70563894-70563913 None:intergenic 35.0%
AGCATATGACTCGCAAAATA+GGG - chr3_4:70564284-70564303 Msa0518720:intron 35.0%
!! TGACAAAAAGTGCTGAAACT+TGG - chr3_4:70564343-70564362 Msa0518720:intron 35.0%
!! AAAAGTGCTGAAACTTGGAA+TGG - chr3_4:70564348-70564367 Msa0518720:intron 35.0%
AGATTCATTCACCTAAGAGA+GGG + chr3_4:70564462-70564481 None:intergenic 35.0%
!! TTTTGAGGGGTTGTATTAAG+TGG - chr3_4:70564595-70564614 Msa0518720:five_prime_UTR 35.0%
CACATCATGATTATGTCATC+TGG + chr3_4:70564683-70564702 None:intergenic 35.0%
!! CTTTGGTTGGTTGGTTTACA+AGG + chr3_4:70558672-70558691 None:intergenic 40.0%
CTTGTAAACCAACCAACCAA+AGG - chr3_4:70558670-70558689 Msa0518720:three_prime_UTR 40.0%
!! TTTGCTTTTCGACCTTTGGT+TGG + chr3_4:70558685-70558704 None:intergenic 40.0%
AACCAAAGGTCGAAAAGCAA+AGG - chr3_4:70558684-70558703 Msa0518720:three_prime_UTR 40.0%
!! TTCCTTTGCTTTTCGACCTT+TGG + chr3_4:70558689-70558708 None:intergenic 40.0%
CTTTCTATAGCACCCAAACA+AGG - chr3_4:70558807-70558826 Msa0518720:three_prime_UTR 40.0%
!! AACTTGTTGAGGCCTTGTTT+GGG + chr3_4:70558822-70558841 None:intergenic 40.0%
!! AAACTTGTTGAGGCCTTGTT+TGG + chr3_4:70558823-70558842 None:intergenic 40.0%
!! CATAGCTGGAAAACTTGTTG+AGG + chr3_4:70558833-70558852 None:intergenic 40.0%
! AGAAGTAGAAGGTGATAACG+TGG + chr3_4:70558878-70558897 None:intergenic 40.0%
!! AGAAGCGTTGTTGAGTGTAT+AGG + chr3_4:70558908-70558927 None:intergenic 40.0%
TGTAAATGGAAGACTTACGG+AGG + chr3_4:70558946-70558965 None:intergenic 40.0%
CCATGTTATGAATCCCTTCT+AGG + chr3_4:70559187-70559206 None:intergenic 40.0%
CCTAGAAGGGATTCATAACA+TGG - chr3_4:70559184-70559203 Msa0518720:intron 40.0%
! GATTCTAAGGACATTTCCGA+AGG + chr3_4:70559263-70559282 None:intergenic 40.0%
ATAGCGCCTTCATTTGATAG+AGG - chr3_4:70559466-70559485 Msa0518720:CDS 40.0%
TAGCGCCTTCATTTGATAGA+GGG - chr3_4:70559467-70559486 Msa0518720:CDS 40.0%
TACTCCCCTCTATCAAATGA+AGG + chr3_4:70559475-70559494 None:intergenic 40.0%
ACTAGACAATCTCTCTTCCA+AGG + chr3_4:70559550-70559569 None:intergenic 40.0%
ATACAACACAGGTAGAGGTT+AGG + chr3_4:70559633-70559652 None:intergenic 40.0%
TCACAATACAACACAGGTAG+AGG + chr3_4:70559638-70559657 None:intergenic 40.0%
TCGGTAGTTGTTACTGGTAA+TGG + chr3_4:70559691-70559710 None:intergenic 40.0%
AGATCGCAGTGAAGAAAAAC+TGG + chr3_4:70560440-70560459 None:intergenic 40.0%
! AGTGATTGGTTGGAAACCAA+GGG + chr3_4:70560472-70560491 None:intergenic 40.0%
!!! GTGCTTTTTGAGTGATTGGT+TGG + chr3_4:70560482-70560501 None:intergenic 40.0%
TTTAGTAGCTCGAACAGATC+AGG - chr3_4:70560519-70560538 Msa0518720:intron 40.0%
! GGAGTGTTATTGCTAAACCT+TGG - chr3_4:70560580-70560599 Msa0518720:intron 40.0%
! GTGTTATTGCTAAACCTTGG+AGG - chr3_4:70560583-70560602 Msa0518720:intron 40.0%
ATCACGACCTAAAGGAATAG+CGG + chr3_4:70560898-70560917 None:intergenic 40.0%
TTAGGTTCATCACGACCTAA+AGG + chr3_4:70560906-70560925 None:intergenic 40.0%
CCCAGTTTGTATCTGTTCTA+AGG - chr3_4:70561028-70561047 Msa0518720:intron 40.0%
CCCTTAGAACAGATACAAAC+TGG + chr3_4:70561032-70561051 None:intergenic 40.0%
GCATCAGTTATACGTCTAAG+AGG + chr3_4:70561099-70561118 None:intergenic 40.0%
TAGACGTATAACTGATGCAC+AGG - chr3_4:70561101-70561120 Msa0518720:intron 40.0%
GACTACAGAATAACAAAGCC+TGG + chr3_4:70561254-70561273 None:intergenic 40.0%
! AGAATGTGTGTTGATCTGGA+AGG + chr3_4:70561561-70561580 None:intergenic 40.0%
! AGAGAGAATGTGTGTTGATC+TGG + chr3_4:70561565-70561584 None:intergenic 40.0%
GATTGGAAAGAGTAAGGATG+AGG + chr3_4:70561896-70561915 None:intergenic 40.0%
GGAGATCATTAGAAGAGCAA+AGG + chr3_4:70562045-70562064 None:intergenic 40.0%
TCAATAGCTTCCTCAGTGAA+TGG + chr3_4:70562152-70562171 None:intergenic 40.0%
CAGGTTTCAACAATGTGATC+AGG + chr3_4:70562370-70562389 None:intergenic 40.0%
AAAGGATGGAGTTACAAAGC+TGG - chr3_4:70562431-70562450 Msa0518720:intron 40.0%
! GTCTACTGGAGAGTATATTC+CGG - chr3_4:70562508-70562527 Msa0518720:intron 40.0%
CTTTCTATCAACCTCCGTTA+AGG - chr3_4:70562717-70562736 Msa0518720:intron 40.0%
GGTTTCAGATAGGTCCTTAA+CGG + chr3_4:70562734-70562753 None:intergenic 40.0%
TATGAATTGGTCCTTCAGAG+AGG - chr3_4:70562886-70562905 Msa0518720:CDS 40.0%
TAGATACTCATCCTCTCTGA+AGG + chr3_4:70562900-70562919 None:intergenic 40.0%
AGCACACAGTATTACCTTCA+TGG - chr3_4:70562930-70562949 Msa0518720:CDS 40.0%
CATGACCTGCACAAATTACT+TGG + chr3_4:70563241-70563260 None:intergenic 40.0%
GGAATGTGTGGATTTGATCA+TGG - chr3_4:70563335-70563354 Msa0518720:intron 40.0%
!! TAGGGTTTTAACCATTCCAC+AGG + chr3_4:70563575-70563594 None:intergenic 40.0%
ACCCTCCTTCATTTCTGATT+TGG - chr3_4:70563886-70563905 Msa0518720:intron 40.0%
GCCAAATCAGAAATGAAGGA+GGG + chr3_4:70563890-70563909 None:intergenic 40.0%
TGCCAAATCAGAAATGAAGG+AGG + chr3_4:70563891-70563910 None:intergenic 40.0%
ATTGAAAGTCTCCCATATGC+TGG - chr3_4:70563920-70563939 Msa0518720:intron 40.0%
! CGGAAGTGTACAAGAGTTAT+TGG - chr3_4:70564260-70564279 Msa0518720:intron 40.0%
CAGCATATGACTCGCAAAAT+AGG - chr3_4:70564283-70564302 Msa0518720:intron 40.0%
GAATATTATCGCCCTCTCTT+AGG - chr3_4:70564448-70564467 Msa0518720:intron 40.0%
GAGATTCATTCACCTAAGAG+AGG + chr3_4:70564463-70564482 None:intergenic 40.0%
!! TGGTTGGTTGGTTTACAAGG+AGG + chr3_4:70558669-70558688 None:intergenic 45.0%
! CTTTTCGACCTTTGGTTGGT+TGG + chr3_4:70558681-70558700 None:intergenic 45.0%
! GGAGTTTGAAGCTTCATAGC+TGG + chr3_4:70558847-70558866 None:intergenic 45.0%
GTTGTTGAGTGTATAGGAGG+CGG + chr3_4:70558902-70558921 None:intergenic 45.0%
AGCGTTGTTGAGTGTATAGG+AGG + chr3_4:70558905-70558924 None:intergenic 45.0%
TACGGAGGACGCTTGAAATT+AGG + chr3_4:70558931-70558950 None:intergenic 45.0%
AGCGCCTTCATTTGATAGAG+GGG - chr3_4:70559468-70559487 Msa0518720:CDS 45.0%
AGTAACAACTCTGTTGCCGA+GGG - chr3_4:70559519-70559538 Msa0518720:CDS 45.0%
AGTCTAGCAGGATCTTGAGA+TGG + chr3_4:70560003-70560022 None:intergenic 45.0%
! AGACAGAAAGTTGATCGCCT+AGG + chr3_4:70560136-70560155 None:intergenic 45.0%
!! GCAGAAGGACTTTTTCTGAG+AGG + chr3_4:70560359-70560378 None:intergenic 45.0%
CAGAAAAAGTCCTTCTGCTC+TGG - chr3_4:70560361-70560380 Msa0518720:intron 45.0%
! GAGTGATTGGTTGGAAACCA+AGG + chr3_4:70560473-70560492 None:intergenic 45.0%
!! TGCACATCTTCTAGAGTCTC+TGG + chr3_4:70560610-70560629 None:intergenic 45.0%
GTATTACCGGGTCTGCAAAA+AGG + chr3_4:70560648-70560667 None:intergenic 45.0%
TCACGACCTAAAGGAATAGC+GGG + chr3_4:70560897-70560916 None:intergenic 45.0%
ACAGATACAAACTGGGCCAA+TGG + chr3_4:70561024-70561043 None:intergenic 45.0%
AGAGAAGGCTACGCTTCAAT+TGG - chr3_4:70561063-70561082 Msa0518720:intron 45.0%
GTTTGAGTAGGAGTTGTTCC+AGG - chr3_4:70561233-70561252 Msa0518720:intron 45.0%
TCTAATGATCTCCTCTGCAC+AGG - chr3_4:70562052-70562071 Msa0518720:intron 45.0%
TTACTGGCATCCATTCACTG+AGG - chr3_4:70562139-70562158 Msa0518720:intron 45.0%
CACTGAGGAAGCTATTGAAC+AGG - chr3_4:70562154-70562173 Msa0518720:intron 45.0%
ATTGTAGAGCGATAGCAGGT+AGG + chr3_4:70562258-70562277 None:intergenic 45.0%
TCGTATTGTAGAGCGATAGC+AGG + chr3_4:70562262-70562281 None:intergenic 45.0%
CGTGAAACTTAAAGGACCCA+GGG + chr3_4:70562814-70562833 None:intergenic 45.0%
ACGTGAAACTTAAAGGACCC+AGG + chr3_4:70562813-70562832 None:intergenic 45.0%
TTCAGATAGGTCCTTAACGG+AGG + chr3_4:70562731-70562750 None:intergenic 45.0%
ACGTGAAACTTAAAGGACCC+AGG - chr3_4:70562813-70562832 Msa0518720:CDS 45.0%
CGTGAAACTTAAAGGACCCA+GGG - chr3_4:70562814-70562833 Msa0518720:CDS 45.0%
TATTGGCCAAATACCTCCCT+GGG + chr3_4:70562833-70562852 None:intergenic 45.0%
ATATTGGCCAAATACCTCCC+TGG + chr3_4:70562834-70562853 None:intergenic 45.0%
CCTTCACGTTGATACCATGA+AGG + chr3_4:70562947-70562966 None:intergenic 45.0%
CCTTCATGGTATCAACGTGA+AGG - chr3_4:70562944-70562963 Msa0518720:CDS 45.0%
!!! GAGTTTTGACTGCCCTAAAG+AGG - chr3_4:70563009-70563028 Msa0518720:CDS 45.0%
TGATCCTTACAAGGCAGAGA+TGG - chr3_4:70563311-70563330 Msa0518720:intron 45.0%
AACTCTTGTACACTTCCGAG+CGG + chr3_4:70564258-70564277 None:intergenic 45.0%
AGGGCGATAATATTCCCCAT+TGG + chr3_4:70564443-70564462 None:intergenic 45.0%
AACCATGCTCTCAAAGACAG+TGG - chr3_4:70564483-70564502 Msa0518720:CDS 45.0%
TGTGCAAGGGAATGACTTGA+TGG + chr3_4:70564566-70564585 None:intergenic 45.0%
! GGTGATAACGTGGCATGAGT+TGG + chr3_4:70558868-70558887 None:intergenic 50.0%
TAGGAGGCGGAAGAAGTAGA+AGG + chr3_4:70558889-70558908 None:intergenic 50.0%
GAGTAACAACTCTGTTGCCG+AGG - chr3_4:70559518-70559537 Msa0518720:CDS 50.0%
GTAACAACTCTGTTGCCGAG+GGG - chr3_4:70559520-70559539 Msa0518720:CDS 50.0%
CTCTTCCAAGGATTTCCCCT+CGG + chr3_4:70559538-70559557 None:intergenic 50.0%
!! GTTTTGACGAGCAGTCTAGC+AGG + chr3_4:70560015-70560034 None:intergenic 50.0%
TTGATCGCCTAGGATGACAG+CGG + chr3_4:70560126-70560145 None:intergenic 50.0%
! TGAGAGGTACAGATTGCCTG+TGG + chr3_4:70560343-70560362 None:intergenic 50.0%
! GCGATCTGAAGCAAAACCCT+TGG - chr3_4:70560453-70560472 Msa0518720:CDS 50.0%
GTAGCCTTCTCTGCTCTTTG+GGG + chr3_4:70561055-70561074 None:intergenic 50.0%
CGTAGCCTTCTCTGCTCTTT+GGG + chr3_4:70561056-70561075 None:intergenic 50.0%
GAAGGCTACGCTTCAATTGG+TGG - chr3_4:70561066-70561085 Msa0518720:intron 50.0%
ATCTAATAGGGTGTGGGCCA+GGG + chr3_4:70561696-70561715 None:intergenic 50.0%
TATCTAATAGGGTGTGGGCC+AGG + chr3_4:70561697-70561716 None:intergenic 50.0%
TGCCAACGTACACTTCAGCA+GGG + chr3_4:70562115-70562134 None:intergenic 50.0%
ATGCCAACGTACACTTCAGC+AGG + chr3_4:70562116-70562135 None:intergenic 50.0%
TGTACGTTGGCATGCGTTAC+TGG - chr3_4:70562123-70562142 Msa0518720:intron 50.0%
ATAGCAGGTAGGAGAATCCC+TGG + chr3_4:70562247-70562266 None:intergenic 50.0%
TAGACGTAAGCTTGAGCCAC+TGG + chr3_4:70562493-70562512 None:intergenic 50.0%
TGGCTCAAGCTTACGTCTAC+TGG - chr3_4:70562494-70562513 Msa0518720:intron 50.0%
ATAAGGGCCAAATACCTCCC+TGG - chr3_4:70562571-70562590 Msa0518720:intron 50.0%
TAAGGGCCAAATACCTCCCT+GGG - chr3_4:70562572-70562591 Msa0518720:intron 50.0%
!! AAAGGACCCAGGGAGGTATT+TGG + chr3_4:70562824-70562843 None:intergenic 50.0%
GAAACTTAAAGGACCCAGGG+AGG + chr3_4:70562817-70562836 None:intergenic 50.0%
GAAACTTAAAGGACCCAGGG+AGG - chr3_4:70562817-70562836 Msa0518720:CDS 50.0%
!! AAAGGACCCAGGGAGGTATT+TGG - chr3_4:70562824-70562843 Msa0518720:CDS 50.0%
GCCTCTTGCTTATGTGGAAG+AGG - chr3_4:70563284-70563303 Msa0518720:intron 50.0%
GCCTCTTCCACATAAGCAAG+AGG + chr3_4:70563288-70563307 None:intergenic 50.0%
CTTGCTTATGTGGAAGAGGC+CGG - chr3_4:70563288-70563307 Msa0518720:intron 50.0%
CTCTGCCTTGTAAGGATCAC+CGG + chr3_4:70563310-70563329 None:intergenic 50.0%
TCCTTACAAGGCAGAGATGG+AGG - chr3_4:70563314-70563333 Msa0518720:intron 50.0%
TCCTCCATCTCTGCCTTGTA+AGG + chr3_4:70563318-70563337 None:intergenic 50.0%
ACCTGATAGGCAAGGGTGAA+GGG + chr3_4:70563390-70563409 None:intergenic 50.0%
TACCTGATAGGCAAGGGTGA+AGG + chr3_4:70563391-70563410 None:intergenic 50.0%
ACAGAGTAGAGTTGGACCTG+TGG - chr3_4:70563556-70563575 Msa0518720:intron 50.0%
GTAGAGTTGGACCTGTGGAA+TGG - chr3_4:70563561-70563580 Msa0518720:intron 50.0%
CACATCCTAGAGCAGGAACA+CGG + chr3_4:70563865-70563884 None:intergenic 50.0%
TTCGAGGCTTGAAACTGCCA+TGG + chr3_4:70563948-70563967 None:intergenic 50.0%
AGAATACCTGTCGAGCTTCG+AGG + chr3_4:70563964-70563983 None:intergenic 50.0%
AAATAGGGAGTTGCCATCGC+CGG - chr3_4:70564299-70564318 Msa0518720:intron 50.0%
! CTCCACTGTCTTTGAGAGCA+TGG + chr3_4:70564488-70564507 None:intergenic 50.0%
TGTTGCCGAGGGGAAATCCT+TGG - chr3_4:70559530-70559549 Msa0518720:CDS 55.0%
CTCCTTACCGCTGTCATCCT+AGG - chr3_4:70560116-70560135 Msa0518720:CDS 55.0%
CACATGAGCTCCAGAGCAGA+AGG + chr3_4:70560374-70560393 None:intergenic 55.0%
!! CTTCTGCTCTGGAGCTCATG+TGG - chr3_4:70560372-70560391 Msa0518720:intron 55.0%
CTAGAGTCTCTGGACCTCCA+AGG + chr3_4:70560600-70560619 None:intergenic 55.0%
GCGTAGCCTTCTCTGCTCTT+TGG + chr3_4:70561057-70561076 None:intergenic 55.0%
GGCTACGCTTCAATTGGTGG+TGG - chr3_4:70561069-70561088 Msa0518720:intron 55.0%
CAAGTCTTCAGCCTGTGCAG+AGG + chr3_4:70562066-70562085 None:intergenic 55.0%
GTCCCTGCTGAAGTGTACGT+TGG - chr3_4:70562110-70562129 Msa0518720:intron 55.0%
! TGGGGTGCCTCTTGCTTATG+TGG - chr3_4:70563278-70563297 Msa0518720:intron 55.0%
AGAGGCCGGTGATCCTTACA+AGG - chr3_4:70563302-70563321 Msa0518720:intron 55.0%
GGCAGAGATGGAGGAATGTG+TGG - chr3_4:70563323-70563342 Msa0518720:intron 55.0%
TCCCTTCACCCTTGCCTATC+AGG - chr3_4:70563386-70563405 Msa0518720:intron 55.0%
GAGGGTTCACATCCTAGAGC+AGG + chr3_4:70563872-70563891 None:intergenic 55.0%
! TCTCCCATATGCTGGTGCCA+TGG - chr3_4:70563928-70563947 Msa0518720:intron 55.0%
CTGCCATGGCACCAGCATAT+GGG + chr3_4:70563934-70563953 None:intergenic 55.0%
ACTGCCATGGCACCAGCATA+TGG + chr3_4:70563935-70563954 None:intergenic 55.0%
TTCAAGCCTCGAAGCTCGAC+AGG - chr3_4:70563955-70563974 Msa0518720:intron 55.0%
! TGGCAGTCTTTGGTTCCGCT+CGG - chr3_4:70564240-70564259 Msa0518720:intron 55.0%
! GCCGGTGATAGTGTGGGAAT+GGG - chr3_4:70564317-70564336 Msa0518720:intron 55.0%
CCCCATTCCCACACTATCAC+CGG + chr3_4:70564321-70564340 None:intergenic 55.0%
! CCGGTGATAGTGTGGGAATG+GGG - chr3_4:70564318-70564337 Msa0518720:intron 55.0%
CGCCTAGGATGACAGCGGTA+AGG + chr3_4:70560121-70560140 None:intergenic 60.0%
! CTTTTGCAGGCTGTCGCCAC+AGG - chr3_4:70560324-70560343 Msa0518720:intron 60.0%
!! CTGCTCTGGAGCTCATGTGG+AGG - chr3_4:70560375-70560394 Msa0518720:intron 60.0%
AGGGCCCCAAAGAGCAGAGA+AGG - chr3_4:70561048-70561067 Msa0518720:intron 60.0%
AGCTGCAAGCACGCGTGATC+TGG - chr3_4:70561642-70561661 Msa0518720:intron 60.0%
GCAGGTAGGAGAATCCCTGG+TGG + chr3_4:70562244-70562263 None:intergenic 60.0%
! TGCCATCGCCGGTGATAGTG+TGG - chr3_4:70564310-70564329 Msa0518720:intron 60.0%
! GCCATCGCCGGTGATAGTGT+GGG - chr3_4:70564311-70564330 Msa0518720:intron 60.0%
TCCCACACTATCACCGGCGA+TGG + chr3_4:70564315-70564334 None:intergenic 60.0%
! CGCCGGTGATAGTGTGGGAA+TGG - chr3_4:70564316-70564335 Msa0518720:intron 60.0%
TGGGGCCGTGTTCCTGCTCT+AGG - chr3_4:70563857-70563876 Msa0518720:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 70558658 70564758 70558658 ID=Msa0518720;Name=Msa0518720
chr3_4 mRNA 70558658 70564758 70558658 ID=Msa0518720-mRNA-1;Parent=Msa0518720;Name=Msa0518720-mRNA-1;_AED=0.16;_eAED=0.16;_QI=192|1|1|1|1|1|10|285|528
chr3_4 exon 70558658 70559170 70558658 ID=Msa0518720-mRNA-1:exon:19251;Parent=Msa0518720-mRNA-1
chr3_4 exon 70559440 70559641 70559440 ID=Msa0518720-mRNA-1:exon:19250;Parent=Msa0518720-mRNA-1
chr3_4 exon 70559756 70559856 70559756 ID=Msa0518720-mRNA-1:exon:19249;Parent=Msa0518720-mRNA-1
chr3_4 exon 70560009 70560161 70560009 ID=Msa0518720-mRNA-1:exon:19248;Parent=Msa0518720-mRNA-1
chr3_4 exon 70560386 70560512 70560386 ID=Msa0518720-mRNA-1:exon:19247;Parent=Msa0518720-mRNA-1
chr3_4 exon 70560887 70560990 70560887 ID=Msa0518720-mRNA-1:exon:19246;Parent=Msa0518720-mRNA-1
chr3_4 exon 70561241 70561342 70561241 ID=Msa0518720-mRNA-1:exon:19245;Parent=Msa0518720-mRNA-1
chr3_4 exon 70562294 70562437 70562294 ID=Msa0518720-mRNA-1:exon:19244;Parent=Msa0518720-mRNA-1
chr3_4 exon 70562756 70563083 70562756 ID=Msa0518720-mRNA-1:exon:19243;Parent=Msa0518720-mRNA-1
chr3_4 exon 70564469 70564758 70564469 ID=Msa0518720-mRNA-1:exon:19242;Parent=Msa0518720-mRNA-1
chr3_4 five_prime_UTR 70564567 70564758 70564567 ID=Msa0518720-mRNA-1:five_prime_utr;Parent=Msa0518720-mRNA-1
chr3_4 CDS 70564469 70564566 70564469 ID=Msa0518720-mRNA-1:cds;Parent=Msa0518720-mRNA-1
chr3_4 CDS 70562756 70563083 70562756 ID=Msa0518720-mRNA-1:cds;Parent=Msa0518720-mRNA-1
chr3_4 CDS 70562294 70562437 70562294 ID=Msa0518720-mRNA-1:cds;Parent=Msa0518720-mRNA-1
chr3_4 CDS 70561241 70561342 70561241 ID=Msa0518720-mRNA-1:cds;Parent=Msa0518720-mRNA-1
chr3_4 CDS 70560887 70560990 70560887 ID=Msa0518720-mRNA-1:cds;Parent=Msa0518720-mRNA-1
chr3_4 CDS 70560386 70560512 70560386 ID=Msa0518720-mRNA-1:cds;Parent=Msa0518720-mRNA-1
chr3_4 CDS 70560009 70560161 70560009 ID=Msa0518720-mRNA-1:cds;Parent=Msa0518720-mRNA-1
chr3_4 CDS 70559756 70559856 70559756 ID=Msa0518720-mRNA-1:cds;Parent=Msa0518720-mRNA-1
chr3_4 CDS 70559440 70559641 70559440 ID=Msa0518720-mRNA-1:cds;Parent=Msa0518720-mRNA-1
chr3_4 CDS 70558943 70559170 70558943 ID=Msa0518720-mRNA-1:cds;Parent=Msa0518720-mRNA-1
chr3_4 three_prime_UTR 70558658 70558942 70558658 ID=Msa0518720-mRNA-1:three_prime_utr;Parent=Msa0518720-mRNA-1
Gene Sequence

>Msa0518720

ATGAAGCTTCAAACTCCAACTCATGCCACGTTATCACCTTCTACTTCTTCCGCCTCCTATACACTCAACAACGCTTCTCCTAATTTCAAGCGTCCTCCGCTGTCGCCACAGGCAATCTGTACCTCTCAGAAAAAGTCCTTCTGCTCTGGAGCTCATGTGGAGGCTTCTGTTAACTCTAATCCTGTGAAAAATTACATAGCAGCCAGTTTTTCTTCACTGCGATCTGAAGCAAAACCCTTGGTTTCCAACCAATCACTCAAAAAGCACATGTTTTCAGTGGGAGCTTTAGTAGCTCGAACAGATCAGGATGTTTCTGATGCAACTCTTACATCTGATGATAAGATTGGAGTGTTATTGCTAAACCTTGGAGGTCCAGAGACTCTAGAAGATGTGCAACCTTTTTTATTTAACCTTTTTGCAGACCCGGATATTATACGATTGCCAAGAATATTTAGTTTTCTTCAAAAGCCATTGGCCCAGTTTGTATCTGTTCTAAGGGCCCCAAAGAGCAGAGAAGGCTACGCTTCAATTGGTGGTGGTTCTCCTCTTAGACGTATAACTGATGCACAGGCTGAAGACTTGAAGAAATCTCTTTCGGAAAAGAATGTCCCTGCTGAAGTGTACGTTGGCATGCGTTACTGGCATCCATTCACTGAGGAAGCTATTGAACAGATTAAAAAGGATGGAGTTACAAAGCTGGTCGTTCTCCCACTTTATCCACAATTTTCAATATCAACCAGTGGCTCAAGCTTACGTCTACTGGAGAGTATATTCCGAGAGGATGAGTATCTAGTCAACATGCAGCACACAGTATTACCTTCATGGTATCAACGTGAAGGATACATAAAGGCCATGTCAAATTTAATTGAAAAAGAACTGAAGAGTTTTGACTGCCCTAAAGAGGTCATGATATTTTTTAGTGCACATGGGGTGCCTCTTGCTTATGTGGAAGAGGCCGGTGATCCTTACAAGGCAGAGATGGAGGAATGTGTGGATTTGATCATGGAAGAGCTTGAGACAAGAAAGATAAGAAATCCCTTCACCCTTGCCTATCAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTATACAGATGAGACAATAGTTGAACTTGGAAAAAAAGGAGTGAAAAGTATGTTGGCTGTTCCAATTAGCTTTGTCAGTGAACATATTGAAACTCTAGAAGAAATTGATGTTGAATACAAAGAATTGGCTCTAGAATCTGGTATAGAAAATTGGGGCCGTGTTCCTGCTCTAGGATGTGAACCCTCCTTCATTTCTGATTTGGCAGATGCTGTTATTGAAAGTCTCCCATATGCTGGTGCCATGGCAGTTTCAAGCCTCGAAGCTCGACAGTCTTTGGTTCCGCTCGGAAGTGTACAAGAGTTATTGGCAGCATATGACTCGCAAAATAGGGAGTTGCCATCGCCGGTGATAGTGTGGGAATGGGGTTTGACAAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGTTAGCTGTGCTGCTTCTTTTGTTTTTTGAAGTCACGACACCTGATAGTATTTTTCACCAATGGGGAATATTATCGCCCTCTCTTAGGTGA

Protein sequence

>Msa0518720

MKLQTPTHATLSPSTSSASYTLNNASPNFKRPPLSPQAICTSQKKSFCSGAHVEASVNSNPVKNYIAASFSSLRSEAKPLVSNQSLKKHMFSVGALVARTDQDVSDATLTSDDKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRIFSFLQKPLAQFVSVLRAPKSREGYASIGGGSPLRRITDAQAEDLKKSLSEKNVPAEVYVGMRYWHPFTEEAIEQIKKDGVTKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVLPSWYQREGYIKAMSNLIEKELKSFDCPKEVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELETRKIRNPFTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSMLAVPISFVSEHIETLEEIDVEYKELALESGIENWGRVPALGCEPSFISDLADAVIESLPYAGAMAVSSLEARQSLVPLGSVQELLAAYDSQNRELPSPVIVWEWGLTKSAETWNGRAAMLAVLLLLFFEVTTPDSIFHQWGILSPSLR*