AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1325260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1325260 MtrunA17_Chr8g0359811 96.495 428 11 2 1 428 1 424 0.0 834
Msa1325260 MtrunA17_Chr6g0450881 30.435 230 122 8 216 425 4 215 2.72e-23 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1325260 AT3G15520.3 62.121 462 132 7 1 425 1 456 0.0 548
Msa1325260 AT3G15520.1 62.121 462 132 7 1 425 1 456 0.0 548
Msa1325260 AT3G15520.2 74.684 316 79 1 111 425 1 316 3.78e-173 488
Msa1325260 AT3G15520.4 56.065 371 120 7 1 334 1 365 7.13e-131 382
Msa1325260 AT3G01480.1 27.249 389 242 11 62 425 59 431 1.51e-33 130
Msa1325260 AT3G01480.2 27.551 294 178 8 62 333 59 339 2.05e-21 95.5

Find 125 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGCATCCTGTTCCTTTA+TGG 0.082861 8_4:+37296923 None:intergenic
GCAAAATTCCCTGCAGTTAA+AGG 0.157758 8_4:+37295839 None:intergenic
GTTCTGCCTCTATCTGTTTA+TGG 0.176620 8_4:-37294666 Msa1325260:CDS
GCCTTCATGTTAGGGCTTGC+AGG 0.251495 8_4:+37299221 None:intergenic
GTGCATTCAACTTTAATAGA+TGG 0.257426 8_4:-37297406 Msa1325260:CDS
GTGGAAGTGGTAGTGTAAAA+AGG 0.284734 8_4:+37299608 None:intergenic
ACCTGTATGGCCTTCATGTT+AGG 0.302845 8_4:+37299212 None:intergenic
AGAGCAACTTCACCAGTTCT+AGG 0.313603 8_4:+37299257 None:intergenic
CATCGTCACATTGGCCTAAT+TGG 0.331013 8_4:+37299432 None:intergenic
ACTGAAGGAAAAGGCCTCTT+TGG 0.331824 8_4:-37297428 Msa1325260:CDS
TCGGCAACACGAGGCGGTCT+TGG 0.335245 8_4:+37294117 None:intergenic
TGCTCCCTGAGCAGGTAAAA+AGG 0.342840 8_4:-37294062 Msa1325260:three_prime_UTR
ACTGAACGGTGGAAGCAATT+AGG 0.367614 8_4:+37299351 None:intergenic
CCTCTGTTGTAGGCCGGCTT+AGG 0.375646 8_4:-37294364 Msa1325260:intron
TTCTGAGAGAATAGCTTGAT+TGG 0.376818 8_4:+37294890 None:intergenic
CCTGTTCCTTTATGGATTGA+AGG 0.378050 8_4:+37296931 None:intergenic
CAACCTGCATCTGGAAAATC+AGG 0.387643 8_4:+37293982 None:intergenic
GAACTGGTGAAGTTGCTCTT+AGG 0.391945 8_4:-37299253 Msa1325260:CDS
TGCTTCACAAAGAGCCAATT+AGG 0.403240 8_4:-37299446 Msa1325260:CDS
CACCGTTCAGTTCAGTTCCA+TGG 0.406317 8_4:-37299339 Msa1325260:CDS
GTTGAGTTTGTCATTGAGAA+AGG 0.413149 8_4:-37296417 Msa1325260:CDS
CCCTAACATGAAGGCCATAC+AGG 0.417871 8_4:-37299213 Msa1325260:intron
CCTTCAATCCATAAAGGAAC+AGG 0.418865 8_4:-37296931 Msa1325260:CDS
CTGTTGTAGGCCGGCTTAGG+AGG 0.421036 8_4:-37294361 Msa1325260:intron
TTTACAACACAACCTGCATC+TGG 0.421240 8_4:+37293973 None:intergenic
AGATGAAAAGGATTCTATAT+TGG 0.426146 8_4:-37297467 Msa1325260:CDS
GTGATGGATGGAGCATATAA+TGG 0.428328 8_4:-37294930 Msa1325260:CDS
TTCCCCTCCATTGTTCCATA+AGG 0.429471 8_4:+37298169 None:intergenic
TTTCTCTCTTCTCCACCAAC+TGG 0.443642 8_4:+37296375 None:intergenic
ATTCCACAGAGGAAACCTTA+TGG 0.445351 8_4:-37298184 Msa1325260:CDS
TATTCAGCTCCTTTAACTGC+AGG 0.448722 8_4:-37295848 Msa1325260:CDS
CGTTCCGCAAAGCTTATTGA+AGG 0.449931 8_4:-37294140 Msa1325260:CDS
TTAGATAGCGGTAGATGAAA+AGG 0.452704 8_4:-37297479 Msa1325260:intron
TAAACAGATAGAGGCAGAAC+TGG 0.454960 8_4:+37294669 None:intergenic
AGTTCTCCTTCAATCCATAA+AGG 0.455076 8_4:-37296937 Msa1325260:CDS
CCTGTATGGCCTTCATGTTA+GGG 0.464546 8_4:+37299213 None:intergenic
TCTTACAGTGCTCCCTGAGC+AGG 0.470897 8_4:-37294070 Msa1325260:three_prime_UTR
ACCACTGGTCTTATCTAGTC+CGG 0.471155 8_4:+37294866 None:intergenic
GACTTTGTGTGGCGGAAGAA+AGG 0.481623 8_4:+37299485 None:intergenic
CAAGCTATTCTCTCAGAAAC+CGG 0.481877 8_4:-37294885 Msa1325260:CDS
TGCATTCAACTTTAATAGAT+GGG 0.484069 8_4:-37297405 Msa1325260:CDS
GACACAAAGGTTCCTAGAAC+TGG 0.487336 8_4:-37299269 Msa1325260:CDS
CCTAATCTGTTCTGTGGAAG+TGG 0.487868 8_4:+37299595 None:intergenic
GTTCTAGGAACCTTTGTGTC+CGG 0.488880 8_4:+37299272 None:intergenic
TTGGCCTTCAATAAGCTTTG+CGG 0.489836 8_4:+37294136 None:intergenic
CAATATCCAGTGTAGATTGA+AGG 0.492806 8_4:+37296886 None:intergenic
CTTAGGAGGGATATCATTTG+AGG 0.495914 8_4:-37294347 Msa1325260:CDS
TCGAATCACATGCTTGCTCT+CGG 0.496249 8_4:+37299656 None:intergenic
TAAAACAACATTAAGTGTAC+AGG 0.496441 8_4:-37294793 Msa1325260:intron
TACAGAATCGCATTCGCAGC+GGG 0.497810 8_4:+37299299 None:intergenic
AGAACAAAACACAACCTGTA+TGG 0.501201 8_4:+37299199 None:intergenic
AAGATATTTCGTATCTGTTG+AGG 0.501205 8_4:-37298207 Msa1325260:CDS
TGTTTATGGAGCAGTTGCTA+TGG 0.502880 8_4:-37294652 Msa1325260:CDS
AGACGTACTCAACTTTCCTT+CGG 0.510289 8_4:+37294098 None:intergenic
AAAGGGTGGTGGCGAGTGAT+CGG 0.512904 8_4:+37299503 None:intergenic
GGCAGAACTAGAGACATTAC+AGG 0.514286 8_4:-37296862 Msa1325260:intron
ACTGCTCCATAAACAGATAG+AGG 0.517132 8_4:+37294660 None:intergenic
AAATGATATCCCTCCTAAGC+CGG 0.522397 8_4:+37294351 None:intergenic
GCGAGTGATCGGAATGTTGA+AGG 0.523573 8_4:+37299514 None:intergenic
TTCAACTTTAATAGATGGGA+AGG 0.524283 8_4:-37297401 Msa1325260:intron
ACTTTGTGTGGCGGAAGAAA+GGG 0.525426 8_4:+37299486 None:intergenic
ATGTGCAGATATACCACCAT+AGG 0.525447 8_4:-37294203 Msa1325260:intron
TCCAGCGGGCATTATTTCCA+AGG 0.533277 8_4:+37294833 None:intergenic
CAAGGGAACATTGTAACCAC+TGG 0.536338 8_4:+37294851 None:intergenic
TTCGAGAAGGTGACTTTGTG+TGG 0.538892 8_4:+37299474 None:intergenic
CCTTCATGTTAGGGCTTGCA+GGG 0.543469 8_4:+37299222 None:intergenic
AGGGGCTCAAATTGTCCAGC+GGG 0.545527 8_4:+37294819 None:intergenic
CCACTTCCACAGAACAGATT+AGG 0.545616 8_4:-37299595 Msa1325260:five_prime_UTR
GGAGGGATATCATTTGAGGA+AGG 0.545622 8_4:-37294343 Msa1325260:CDS
TCTGTATTCGCCGGACACAA+AGG 0.546228 8_4:-37299282 Msa1325260:CDS
CCCTGCAAGCCCTAACATGA+AGG 0.549248 8_4:-37299222 Msa1325260:CDS
ACCAGCGGAACTGAAGGAAA+AGG 0.552137 8_4:-37297437 Msa1325260:CDS
ACGGTGGAAGCAATTAGGAT+TGG 0.562553 8_4:+37299356 None:intergenic
ATATTGCGGCAACAGGCACC+TGG 0.563706 8_4:-37296721 Msa1325260:intron
CATATCCTTTAGGTGATGGA+TGG 0.564081 8_4:-37294942 Msa1325260:intron
GTGAAACTGTGTAATTTGAA+AGG 0.564757 8_4:+37293847 None:intergenic
TGTTGTAGGCCGGCTTAGGA+GGG 0.566790 8_4:-37294360 Msa1325260:intron
GGCTCATAACGAAGCTTCTG+AGG 0.571419 8_4:-37294631 Msa1325260:CDS
CAGTGGTTACAATGTTCCCT+TGG 0.571994 8_4:-37294850 Msa1325260:CDS
TCTGTTGCCGGGGCAATACA+CGG 0.572281 8_4:-37296689 Msa1325260:CDS
TTTGTCATTGAGAAAGGAGA+CGG 0.572532 8_4:-37296411 Msa1325260:CDS
CCAGCGGGCATTATTTCCAA+GGG 0.572993 8_4:+37294834 None:intergenic
AAGTATACCAGCGGAACTGA+AGG 0.574421 8_4:-37297443 Msa1325260:CDS
TCAATCTACACTGGATATTG+TGG 0.574665 8_4:-37296883 Msa1325260:CDS
TGTGACGATGACACGTCACT+TGG 0.575269 8_4:-37299419 Msa1325260:CDS
GAGAATATCTCTCCCTATGG+TGG 0.583172 8_4:+37294190 None:intergenic
GAGGGATATCATTTGAGGAA+GGG 0.583536 8_4:-37294342 Msa1325260:CDS
AAACCTTATGGAACAATGGA+GGG 0.584507 8_4:-37298172 Msa1325260:CDS
AGACCGCCTCGTGTTGCCGA+AGG 0.589819 8_4:-37294114 Msa1325260:CDS
GGGGAGAATATCTCTCCCTA+TGG 0.590339 8_4:+37294187 None:intergenic
GGATATTCCGTGTATTGCCC+CGG 0.591341 8_4:+37296682 None:intergenic
TGTGAACCTTCAATCTACAC+TGG 0.593107 8_4:-37296892 Msa1325260:CDS
GTTCCATAAGGTTTCCTCTG+TGG 0.593482 8_4:+37298181 None:intergenic
AACTTTCCTTCGGCAACACG+AGG 0.594186 8_4:+37294108 None:intergenic
TGCGGAACGAATGATATCCC+CGG 0.594728 8_4:+37294154 None:intergenic
CCCTTGGAAATAATGCCCGC+TGG 0.595063 8_4:-37294834 Msa1325260:CDS
TAAAGTTGAATGCACCAAAG+AGG 0.604599 8_4:+37297414 None:intergenic
ATTCAGCTCCTTTAACTGCA+GGG 0.605738 8_4:-37295847 Msa1325260:CDS
TGCGCGCCTAATCTGTTCTG+TGG 0.607064 8_4:+37299589 None:intergenic
GTGACGTGTCATCGTCACAT+TGG 0.615916 8_4:+37299423 None:intergenic
GAAACCTTATGGAACAATGG+AGG 0.616389 8_4:-37298173 Msa1325260:CDS
TTTCCTTCGGCAACACGAGG+CGG 0.622511 8_4:+37294111 None:intergenic
AGAAGACACGTAAGGAACCA+TGG 0.625125 8_4:+37299322 None:intergenic
TGTGGCGGAAGAAAGGGTGG+TGG 0.625221 8_4:+37299492 None:intergenic
GAGGAAACCTTATGGAACAA+TGG 0.627363 8_4:-37298176 Msa1325260:CDS
GGCAACAGAAAAGATAGACC+AGG 0.630813 8_4:+37296703 None:intergenic
AACCTTATGGAACAATGGAG+GGG 0.632285 8_4:-37298171 Msa1325260:CDS
GTGAAGCAGAAGATTCGAGA+AGG 0.633102 8_4:+37299461 None:intergenic
TTGTGTGGCGGAAGAAAGGG+TGG 0.634669 8_4:+37299489 None:intergenic
TGTGCAGATATACCACCATA+GGG 0.644025 8_4:-37294202 Msa1325260:intron
GGCAATACACGGAATATCCA+CGG 0.644795 8_4:-37296678 Msa1325260:intron
GAATGCGATTCTGTATTCGC+CGG 0.647570 8_4:-37299291 Msa1325260:CDS
ATGTTGAAGGAAGAAGAGAG+AGG 0.656967 8_4:+37299527 None:intergenic
AACCATGGAACTGAACTGAA+CGG 0.659365 8_4:+37299337 None:intergenic
GCAGCGGGAGAAGACACGTA+AGG 0.664077 8_4:+37299314 None:intergenic
GAGAAGGTGACTTTGTGTGG+CGG 0.672767 8_4:+37299477 None:intergenic
CGTCACTTGGTATAACTCAG+AGG 0.681064 8_4:-37299406 Msa1325260:CDS
ATACAGAATCGCATTCGCAG+CGG 0.692269 8_4:+37299298 None:intergenic
AAGGGGCTCAAATTGTCCAG+CGG 0.695442 8_4:+37294818 None:intergenic
TATATTGGCAAGTATACCAG+CGG 0.697073 8_4:-37297452 Msa1325260:CDS
CATGGAACTGAACTGAACGG+TGG 0.719811 8_4:+37299340 None:intergenic
ACCGGACTAGATAAGACCAG+TGG 0.737652 8_4:-37294867 Msa1325260:CDS
ATCTGTTGAGGATTCCACAG+AGG 0.745433 8_4:-37298195 Msa1325260:CDS
CAAATTACACAGTTTCACCG+CGG 0.760603 8_4:-37293842 None:intergenic
AAAGGGACACGTGTACACTG+TGG 0.764061 8_4:+37299626 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAGAAAACAAATATA+AGG + chr8_4:37298976-37298995 None:intergenic 10.0%
!!! TTATGTTTTTGTTTTTATTT+TGG - chr8_4:37299266-37299285 Msa1325260:CDS 10.0%
!!! TATGTTTTTGTTTTTATTTT+GGG - chr8_4:37299267-37299286 Msa1325260:CDS 10.0%
!! AATTATTCTCACAATAAATA+AGG - chr8_4:37295056-37295075 Msa1325260:intron 15.0%
!! ATTATTCTCACAATAAATAA+GGG - chr8_4:37295057-37295076 Msa1325260:intron 15.0%
!!! AATCAAAATATTGCAAATTT+TGG + chr8_4:37295155-37295174 None:intergenic 15.0%
!! AGTTTCTATAAAAAAATAGT+TGG + chr8_4:37295230-37295249 None:intergenic 15.0%
!! ATAAAAAGTTCATGATTAAT+AGG + chr8_4:37297908-37297927 None:intergenic 15.0%
!!! AAATTTCAAGTAGAAAATAT+AGG + chr8_4:37298118-37298137 None:intergenic 15.0%
!! TTTAATGTGAAACTAATATA+AGG - chr8_4:37298232-37298251 Msa1325260:intron 15.0%
!! TTAATGTGAAACTAATATAA+GGG - chr8_4:37298233-37298252 Msa1325260:intron 15.0%
!! CTTAAAAATGTATTTATAAG+TGG + chr8_4:37298497-37298516 None:intergenic 15.0%
!!! CACTTATAAATACATTTTTA+AGG - chr8_4:37298495-37298514 Msa1325260:intron 15.0%
!!! ACTTAATGTTGTTTTATAAA+GGG + chr8_4:37298701-37298720 None:intergenic 15.0%
!!! ATGTTTTTGTTTTTATTTTG+GGG - chr8_4:37299268-37299287 Msa1325260:CDS 15.0%
!! TTATGTATAATAAACTTGTG+TGG - chr8_4:37294351-37294370 Msa1325260:CDS 20.0%
!!! ATAGGTTACTATTTCTTTTT+GGG + chr8_4:37294724-37294743 None:intergenic 20.0%
!!! AATAGGTTACTATTTCTTTT+TGG + chr8_4:37294725-37294744 None:intergenic 20.0%
!! TAATGTTGAAAATGATCAAA+TGG - chr8_4:37295105-37295124 Msa1325260:intron 20.0%
!!! ATATTTTGATTCGCATAAAA+AGG - chr8_4:37295164-37295183 Msa1325260:intron 20.0%
!!! AAAGTATTAGAAAGAAAGTT+GGG - chr8_4:37295680-37295699 Msa1325260:intron 20.0%
!!! ATGAAAAATCACTGATTATT+AGG - chr8_4:37295724-37295743 Msa1325260:intron 20.0%
!! TACAATTAATCAAATAATCG+AGG + chr8_4:37296142-37296161 None:intergenic 20.0%
!!! TATTTTTTCTGTTAGAAAGA+AGG + chr8_4:37296180-37296199 None:intergenic 20.0%
!!! TTTGTTATATAATTCTCACA+TGG - chr8_4:37296477-37296496 Msa1325260:intron 20.0%
!!! ATTGATTCAGTCATTTTAAT+TGG + chr8_4:37296717-37296736 None:intergenic 20.0%
!! TCAATGTAACACTTATATTA+TGG - chr8_4:37296732-37296751 Msa1325260:intron 20.0%
!! AATCCATAAACATTAAGAAA+AGG - chr8_4:37297234-37297253 Msa1325260:intron 20.0%
!!! TATTTATTTTGAGATAAGCT+TGG - chr8_4:37297409-37297428 Msa1325260:CDS 20.0%
!!! TTCTTTGCTAAAACTTATTT+TGG - chr8_4:37297484-37297503 Msa1325260:intron 20.0%
!!! TGTTCATTTTTTTACTTGAA+TGG - chr8_4:37297842-37297861 Msa1325260:intron 20.0%
!!! AAAATTACTTGTTTTGCTTT+TGG - chr8_4:37297975-37297994 Msa1325260:intron 20.0%
!!! AAATTACTTGTTTTGCTTTT+GGG - chr8_4:37297976-37297995 Msa1325260:intron 20.0%
!! TTTGAATAGAGAATAAAGAA+TGG - chr8_4:37298006-37298025 Msa1325260:intron 20.0%
!!! GTTGATTTTAATGATTAATG+AGG - chr8_4:37298146-37298165 Msa1325260:intron 20.0%
!!! AATTTGATTTTACCATCATT+TGG - chr8_4:37298424-37298443 Msa1325260:intron 20.0%
!!! ATTTGATTTTACCATCATTT+GGG - chr8_4:37298425-37298444 Msa1325260:intron 20.0%
!!! CTTAATGTTGTTTTATAAAG+GGG + chr8_4:37298700-37298719 None:intergenic 20.0%
!!! CACTTAATGTTGTTTTATAA+AGG + chr8_4:37298702-37298721 None:intergenic 20.0%
!! AGATAGAAGAAAAATTGATA+AGG + chr8_4:37298904-37298923 None:intergenic 20.0%
!! TCTATGATAAAAGAAATGTA+AGG - chr8_4:37298923-37298942 Msa1325260:intron 20.0%
!! CTATGATAAAAGAAATGTAA+GGG - chr8_4:37298924-37298943 Msa1325260:intron 20.0%
!!! CATGTTTTTAAAAACTAGAA+CGG - chr8_4:37299052-37299071 Msa1325260:intron 20.0%
!!! ATGTTTTTAAAAACTAGAAC+GGG - chr8_4:37299053-37299072 Msa1325260:intron 20.0%
!! CAATTGAAAAGAAAAAACAA+AGG + chr8_4:37299080-37299099 None:intergenic 20.0%
!!! TATAATCTTCTGAATCATTT+TGG - chr8_4:37299216-37299235 Msa1325260:CDS 20.0%
!!! TTGAAGTTTTTTAGATTAGC+AGG + chr8_4:37294756-37294775 None:intergenic 25.0%
! ATCAAAGAAATGCATTGAAA+TGG - chr8_4:37294777-37294796 Msa1325260:intron 25.0%
! AATGGTTAATTGCAAATTGA+TGG - chr8_4:37294795-37294814 Msa1325260:CDS 25.0%
! TGATTCTAAACTATAAAGCA+CGG - chr8_4:37294831-37294850 Msa1325260:CDS 25.0%
! TTCAGTGTAATTATATGTGT+TGG + chr8_4:37294890-37294909 None:intergenic 25.0%
! TCTAAAAAAATTAGCTGTGT+CGG - chr8_4:37294921-37294940 Msa1325260:CDS 25.0%
!!! TTTTTAGAATCTATGAAGCA+CGG + chr8_4:37294988-37295007 None:intergenic 25.0%
!! TAGATTCTAAAAATAGCCTT+TGG - chr8_4:37294995-37295014 Msa1325260:intron 25.0%
!! GTTTAATATCTGAAATCACA+TGG - chr8_4:37295408-37295427 Msa1325260:intron 25.0%
! AGATGCATTATAAGAAATAC+TGG - chr8_4:37295442-37295461 Msa1325260:intron 25.0%
! TTACCACTTTATCATATAGT+AGG + chr8_4:37295570-37295589 None:intergenic 25.0%
!!! GAAAGTATTAGAAAGAAAGT+TGG - chr8_4:37295679-37295698 Msa1325260:intron 25.0%
! CATTAATTCAATTGAACAGA+GGG + chr8_4:37295778-37295797 None:intergenic 25.0%
! TCATTAATTCAATTGAACAG+AGG + chr8_4:37295779-37295798 None:intergenic 25.0%
!!! TTCTTCCTTATTTTAGATAG+CGG - chr8_4:37296007-37296026 Msa1325260:intron 25.0%
! AGATGAAAAGGATTCTATAT+TGG - chr8_4:37296031-37296050 Msa1325260:intron 25.0%
! TGCATTCAACTTTAATAGAT+GGG - chr8_4:37296093-37296112 Msa1325260:intron 25.0%
! TATTCACGTTTCAACATAAT+TGG - chr8_4:37296198-37296217 Msa1325260:intron 25.0%
! GGATATGTTTATGATGATTT+CGG - chr8_4:37296219-37296238 Msa1325260:intron 25.0%
!!! TGTGTTACTTTTTTTGTTGT+AGG - chr8_4:37296436-37296455 Msa1325260:CDS 25.0%
! CAAGATAGCATCATATTATT+TGG + chr8_4:37296671-37296690 None:intergenic 25.0%
! TTAATCTGATCTTGATATTG+CGG - chr8_4:37296763-37296782 Msa1325260:intron 25.0%
! ACGTCAAAATATACATTAGA+GGG + chr8_4:37296902-37296921 None:intergenic 25.0%
! TACGTCAAAATATACATTAG+AGG + chr8_4:37296903-37296922 None:intergenic 25.0%
! AAATTCAATAGTCAGAAGAA+GGG - chr8_4:37297006-37297025 Msa1325260:intron 25.0%
!!! CATCTTCGTAATTTTTTTGT+AGG - chr8_4:37297040-37297059 Msa1325260:intron 25.0%
!!! TAATTTTTTTGTAGGCTTTC+AGG - chr8_4:37297048-37297067 Msa1325260:intron 25.0%
!!! AATTTTTTTGTAGGCTTTCA+GGG - chr8_4:37297049-37297068 Msa1325260:intron 25.0%
! TAATCATAAAGGACAAGTTA+TGG + chr8_4:37297177-37297196 None:intergenic 25.0%
!! TTTATGGATTGTTTAAGACT+AGG + chr8_4:37297224-37297243 None:intergenic 25.0%
!! TTAAGAAAAGGTCCATTTTA+AGG - chr8_4:37297246-37297265 Msa1325260:intron 25.0%
!!! ACTGTTTTTCTTAATCTATC+TGG + chr8_4:37297303-37297322 None:intergenic 25.0%
!!! TGCTAAAACTTATTTTGGAA+TGG - chr8_4:37297489-37297508 Msa1325260:intron 25.0%
!!! AAAACTTATTTTGGAATGGA+TGG - chr8_4:37297493-37297512 Msa1325260:intron 25.0%
! TATCATGGTTTATCCATATT+TGG - chr8_4:37297781-37297800 Msa1325260:intron 25.0%
! TGAACATAAGTTTAAGAATG+TGG + chr8_4:37298035-37298054 None:intergenic 25.0%
! ACATTCTTAAACTTATGTTC+AGG - chr8_4:37298034-37298053 Msa1325260:intron 25.0%
! TAAAACAACATTAAGTGTAC+AGG - chr8_4:37298705-37298724 Msa1325260:intron 25.0%
!! TCATTTTCTTATGTGTCTTT+TGG - chr8_4:37298791-37298810 Msa1325260:intron 25.0%
!! AACAAATATAAGGCTTTTAG+CGG + chr8_4:37298966-37298985 None:intergenic 25.0%
! TAATGCAAAATAAGAGTGAA+AGG - chr8_4:37299000-37299019 Msa1325260:intron 25.0%
!!! CAAATTACACTTTTTCACTA+TGG - chr8_4:37299579-37299598 Msa1325260:five_prime_UTR 25.0%
ATAATAAACTTGTGTGGTGA+AGG - chr8_4:37294357-37294376 Msa1325260:intron 30.0%
TTCCAACAAATTCTTGTGTT+GGG - chr8_4:37294554-37294573 Msa1325260:intron 30.0%
AGATTAAAAACACCAAGTCA+TGG - chr8_4:37294638-37294657 Msa1325260:CDS 30.0%
GATTAAAAACACCAAGTCAT+GGG - chr8_4:37294639-37294658 Msa1325260:CDS 30.0%
AAGATATGAAAAGACACCAA+AGG + chr8_4:37295014-37295033 None:intergenic 30.0%
! GTGTCTTTTCATATCTTTCT+TGG - chr8_4:37295017-37295036 Msa1325260:intron 30.0%
! ACAATAAATAAGGGTATACG+AGG - chr8_4:37295066-37295085 Msa1325260:intron 30.0%
TGTTACAATGATGCTAATTC+AGG - chr8_4:37295259-37295278 Msa1325260:intron 30.0%
AAGATATTTCGTATCTGTTG+AGG - chr8_4:37295291-37295310 Msa1325260:intron 30.0%
!! GAACGTAAAGAAAGTTTTGA+AGG - chr8_4:37295349-37295368 Msa1325260:intron 30.0%
TGCATTATAAGAAATACTGG+AGG - chr8_4:37295445-37295464 Msa1325260:intron 30.0%
GCATTATAAGAAATACTGGA+GGG - chr8_4:37295446-37295465 Msa1325260:intron 30.0%
ATATAGAAGATGCAAACCAT+AGG - chr8_4:37295471-37295490 Msa1325260:intron 30.0%
TATATTGCACATGAATCCTA+TGG + chr8_4:37295490-37295509 None:intergenic 30.0%
ATAGGATTCATGTGCAATAT+AGG - chr8_4:37295489-37295508 Msa1325260:intron 30.0%
AAATTTACCTGTAAACTCGA+GGG + chr8_4:37295529-37295548 None:intergenic 30.0%
AAAATTTACCTGTAAACTCG+AGG + chr8_4:37295530-37295549 None:intergenic 30.0%
AGACCTACTATATGATAAAG+TGG - chr8_4:37295564-37295583 Msa1325260:intron 30.0%
TCAGATGCAAACTTTATGAT+GGG - chr8_4:37295621-37295640 Msa1325260:intron 30.0%
! ATCTACCGCTATCTAAAATA+AGG + chr8_4:37296015-37296034 None:intergenic 30.0%
GTGCATTCAACTTTAATAGA+TGG - chr8_4:37296092-37296111 Msa1325260:intron 30.0%
TTCAACTTTAATAGATGGGA+AGG - chr8_4:37296097-37296116 Msa1325260:intron 30.0%
ATTTCGGTCAATTTAACTCA+GGG - chr8_4:37296235-37296254 Msa1325260:intron 30.0%
! AAGGTATATCGGCTATATAT+AGG + chr8_4:37296320-37296339 None:intergenic 30.0%
GATATAAGCACAAGGTATAT+CGG + chr8_4:37296331-37296350 None:intergenic 30.0%
TAATTCTCACATGGTAGTTA+TGG - chr8_4:37296486-37296505 Msa1325260:intron 30.0%
CATTCTGATAGCTTCTATAA+TGG + chr8_4:37296513-37296532 None:intergenic 30.0%
! AATGATATCAGCATTTTGCA+GGG - chr8_4:37296529-37296548 Msa1325260:intron 30.0%
!!! AAACTGACATGTCATTTTGA+AGG + chr8_4:37296855-37296874 None:intergenic 30.0%
CAAATTCAATAGTCAGAAGA+AGG - chr8_4:37297005-37297024 Msa1325260:intron 30.0%
! ATTGAATTTTACCTGAATGG+TGG + chr8_4:37297154-37297173 None:intergenic 30.0%
! TGGATTGAATTTTACCTGAA+TGG + chr8_4:37297157-37297176 None:intergenic 30.0%
TGTCCTTTATGATTATCCAT+TGG - chr8_4:37297182-37297201 Msa1325260:intron 30.0%
CAACCAATGGATAATCATAA+AGG + chr8_4:37297188-37297207 None:intergenic 30.0%
! GGACCTTTTCTTAATGTTTA+TGG + chr8_4:37297240-37297259 None:intergenic 30.0%
ATCTTGAGTGTTCCTTAAAA+TGG + chr8_4:37297261-37297280 None:intergenic 30.0%
ACTCAAGATAAGCATCTTTA+AGG - chr8_4:37297272-37297291 Msa1325260:intron 30.0%
CATAACTGCAAATATGTAGT+TGG - chr8_4:37297531-37297550 Msa1325260:intron 30.0%
GTGCATTGAAAGTTTAATGT+TGG - chr8_4:37297569-37297588 Msa1325260:intron 30.0%
! GAAAGTTTAATGTTGGTAGA+CGG - chr8_4:37297576-37297595 Msa1325260:intron 30.0%
! AATATCCATCTAAAACAACC+TGG + chr8_4:37297634-37297653 None:intergenic 30.0%
! TTCATTTTCATCGCTTATCA+TGG - chr8_4:37297766-37297785 Msa1325260:intron 30.0%
GATTAATAGGAAGTCAGTAA+TGG + chr8_4:37297895-37297914 None:intergenic 30.0%
CGTGATAAAATTTCTGTATG+AGG - chr8_4:37298072-37298091 Msa1325260:intron 30.0%
TATGAGGAGAATATAGTAAC+TGG - chr8_4:37298088-37298107 Msa1325260:intron 30.0%
! TCAACTTTTAAACGAAACCT+TGG - chr8_4:37298174-37298193 Msa1325260:CDS 30.0%
TATGGCAATATACAACTTTG+AGG - chr8_4:37298204-37298223 Msa1325260:CDS 30.0%
! CAATATACAACTTTGAGGAA+TGG - chr8_4:37298209-37298228 Msa1325260:CDS 30.0%
GGAAATTATGTGTTGCAATT+TGG - chr8_4:37298298-37298317 Msa1325260:intron 30.0%
!! ATTTTACCATCATTTGGGTT+AGG - chr8_4:37298430-37298449 Msa1325260:intron 30.0%
TAAGGCATATCTATCTAATG+TGG - chr8_4:37298513-37298532 Msa1325260:intron 30.0%
! TTTCTTATGTGTCTTTTGGA+AGG - chr8_4:37298795-37298814 Msa1325260:intron 30.0%
! ACAAATATAAGGCTTTTAGC+GGG + chr8_4:37298965-37298984 None:intergenic 30.0%
! TTATTCTTTTCCTCTGTTGT+AGG - chr8_4:37299124-37299143 Msa1325260:intron 30.0%
! AAGGGCAATTTTCAGTTTTT+GGG - chr8_4:37299174-37299193 Msa1325260:intron 30.0%
GTGAAACTGTGTAATTTGAA+AGG + chr8_4:37299654-37299673 None:intergenic 30.0%
! TGGAAGTGGTAGTGTAAAAA+GGG + chr8_4:37293892-37293911 None:intergenic 35.0%
CCATTGATGTGAAAAAAGAG+TGG + chr8_4:37293946-37293965 None:intergenic 35.0%
!!! CCACTCTTTTTTCACATCAA+TGG - chr8_4:37293943-37293962 Msa1325260:three_prime_UTR 35.0%
AGAACAAAACACAACCTGTA+TGG + chr8_4:37294302-37294321 None:intergenic 35.0%
GTCTTAAGTTCGAATCATTG+AGG - chr8_4:37294410-37294429 Msa1325260:intron 35.0%
TGAGGTTTCAACAATTCTGT+TGG - chr8_4:37294428-37294447 Msa1325260:intron 35.0%
AACAATTCTGTTGGAACACA+TGG - chr8_4:37294437-37294456 Msa1325260:intron 35.0%
ATTCAGCCTAGTAATCTCTT+CGG - chr8_4:37294496-37294515 Msa1325260:intron 35.0%
GTTCCAACAAATTCTTGTGT+TGG - chr8_4:37294553-37294572 Msa1325260:intron 35.0%
GAAGTTGGAACGAAATTAGA+AGG - chr8_4:37294610-37294629 Msa1325260:CDS 35.0%
TTGGAACGAAATTAGAAGGT+TGG - chr8_4:37294614-37294633 Msa1325260:CDS 35.0%
ATTAGCAGGAGCAACTAAAT+AGG + chr8_4:37294742-37294761 None:intergenic 35.0%
ATTCGCATAAAAAGGACTGA+TGG - chr8_4:37295172-37295191 Msa1325260:intron 35.0%
TTCGCATAAAAAGGACTGAT+GGG - chr8_4:37295173-37295192 Msa1325260:intron 35.0%
AAACCTTATGGAACAATGGA+GGG - chr8_4:37295326-37295345 Msa1325260:intron 35.0%
AAAATAACCCTCGAGTTTAC+AGG - chr8_4:37295519-37295538 Msa1325260:intron 35.0%
CTCAGATGCAAACTTTATGA+TGG - chr8_4:37295620-37295639 Msa1325260:intron 35.0%
TGGAATCCACAAGACAAAAT+AGG - chr8_4:37295647-37295666 Msa1325260:intron 35.0%
! CTCATTCCTATTTTGTCTTG+TGG + chr8_4:37295656-37295675 None:intergenic 35.0%
GGGTCTGTAAAATCTTAGAA+AGG + chr8_4:37295758-37295777 None:intergenic 35.0%
CCAAGGCTTAAAAGATGTTA+TGG + chr8_4:37295861-37295880 None:intergenic 35.0%
! CCATAACATCTTTTAAGCCT+TGG - chr8_4:37295858-37295877 Msa1325260:CDS 35.0%
TGAAACGTCGTATTCATACA+AGG - chr8_4:37295964-37295983 Msa1325260:intron 35.0%
! TTAGATAGCGGTAGATGAAA+AGG - chr8_4:37296019-37296038 Msa1325260:intron 35.0%
TATATTGGCAAGTATACCAG+CGG - chr8_4:37296046-37296065 Msa1325260:intron 35.0%
TAAAGTTGAATGCACCAAAG+AGG + chr8_4:37296087-37296106 None:intergenic 35.0%
GATTTCGGTCAATTTAACTC+AGG - chr8_4:37296234-37296253 Msa1325260:intron 35.0%
!! AGGTTGCTGATTCTAGAAAA+AGG - chr8_4:37296355-37296374 Msa1325260:intron 35.0%
! GAATGATATCAGCATTTTGC+AGG - chr8_4:37296528-37296547 Msa1325260:intron 35.0%
! ATGATATCAGCATTTTGCAG+GGG - chr8_4:37296530-37296549 Msa1325260:intron 35.0%
AGTTCTCCTTCAATCCATAA+AGG - chr8_4:37296561-37296580 Msa1325260:intron 35.0%
CAATATCCAGTGTAGATTGA+AGG + chr8_4:37296615-37296634 None:intergenic 35.0%
TCAATCTACACTGGATATTG+TGG - chr8_4:37296615-37296634 Msa1325260:intron 35.0%
! ACTAGTCTCATGTCAAATGA+TGG + chr8_4:37296938-37296957 None:intergenic 35.0%
TCATTCTTAGTGCAATTCCT+TGG - chr8_4:37296981-37297000 Msa1325260:intron 35.0%
CTGACTATTGAATTTGTCCA+AGG + chr8_4:37297001-37297020 None:intergenic 35.0%
GTTGAGTTTGTCATTGAGAA+AGG - chr8_4:37297081-37297100 Msa1325260:intron 35.0%
TTTGTCATTGAGAAAGGAGA+CGG - chr8_4:37297087-37297106 Msa1325260:intron 35.0%
TCGATCAAATCAACAACCAA+TGG + chr8_4:37297201-37297220 None:intergenic 35.0%
! GGAATTTTGCAAAACTGGTA+AGG - chr8_4:37297672-37297691 Msa1325260:intron 35.0%
AAATGAAGAGCGATATACAC+TGG + chr8_4:37297753-37297772 None:intergenic 35.0%
CTGGTAAATCAGACCAAATA+TGG + chr8_4:37297797-37297816 None:intergenic 35.0%
! ATTTAGTTCACTCAGAGAAC+TGG + chr8_4:37297816-37297835 None:intergenic 35.0%
! TATTGCCATAGTTGTTTCCA+AGG + chr8_4:37298194-37298213 None:intergenic 35.0%
TATAAGGGATGAGAGCAATA+AGG - chr8_4:37298248-37298267 Msa1325260:intron 35.0%
ATGAGAGCAATAAGGAAGTA+TGG - chr8_4:37298256-37298275 Msa1325260:intron 35.0%
GCATATATTGCTGTATAACG+TGG - chr8_4:37298361-37298380 Msa1325260:intron 35.0%
!! CCTTACAAACCGATTTTGTA+GGG + chr8_4:37298461-37298480 None:intergenic 35.0%
! TTCTGAGAGAATAGCTTGAT+TGG + chr8_4:37298611-37298630 None:intergenic 35.0%
!! TTATGTGTCTTTTGGAAGGA+TGG - chr8_4:37298799-37298818 Msa1325260:intron 35.0%
!! TATGTGTCTTTTGGAAGGAT+GGG - chr8_4:37298800-37298819 Msa1325260:intron 35.0%
! CAAATATAAGGCTTTTAGCG+GGG + chr8_4:37298964-37298983 None:intergenic 35.0%
TGCAAAATAAGAGTGAAAGG+TGG - chr8_4:37299003-37299022 Msa1325260:intron 35.0%
! GAAGGGCAATTTTCAGTTTT+TGG - chr8_4:37299173-37299192 Msa1325260:intron 35.0%
! GTGGAAGTGGTAGTGTAAAA+AGG + chr8_4:37293893-37293912 None:intergenic 40.0%
ATGTTGAAGGAAGAAGAGAG+AGG + chr8_4:37293974-37293993 None:intergenic 40.0%
TGCTTCACAAAGAGCCAATT+AGG - chr8_4:37294052-37294071 Msa1325260:three_prime_UTR 40.0%
AACCATGGAACTGAACTGAA+CGG + chr8_4:37294164-37294183 None:intergenic 40.0%
TTCGAACTTAAGACCTTGTG+AGG + chr8_4:37294404-37294423 None:intergenic 40.0%
GACCCAACACAAGAATTTGT+TGG + chr8_4:37294559-37294578 None:intergenic 40.0%
!! TATATGTGTTGGTGTCGTGT+CGG + chr8_4:37294879-37294898 None:intergenic 40.0%
GAATCTATGAAGCACGGATA+CGG + chr8_4:37294982-37295001 None:intergenic 40.0%
ATTCCACAGAGGAAACCTTA+TGG - chr8_4:37295314-37295333 Msa1325260:intron 40.0%
GAGGAAACCTTATGGAACAA+TGG - chr8_4:37295322-37295341 Msa1325260:intron 40.0%
GAAACCTTATGGAACAATGG+AGG - chr8_4:37295325-37295344 Msa1325260:intron 40.0%
AACCTTATGGAACAATGGAG+GGG - chr8_4:37295327-37295346 Msa1325260:intron 40.0%
ATCTGAGCATCTCTGTAACA+TGG + chr8_4:37295607-37295626 None:intergenic 40.0%
!! GCAAACTTTATGATGGGTCA+TGG - chr8_4:37295627-37295646 Msa1325260:intron 40.0%
ATCAACGAAAAGACACACCA+AGG + chr8_4:37295878-37295897 None:intergenic 40.0%
ACCTTGTGCTTATATCACAC+AGG - chr8_4:37296335-37296354 Msa1325260:intron 40.0%
ACCTGTGTGATATAAGCACA+AGG + chr8_4:37296339-37296358 None:intergenic 40.0%
! TGATATCAGCATTTTGCAGG+GGG - chr8_4:37296531-37296550 Msa1325260:intron 40.0%
! CCTGTTCCTTTATGGATTGA+AGG + chr8_4:37296570-37296589 None:intergenic 40.0%
CCTTCAATCCATAAAGGAAC+AGG - chr8_4:37296567-37296586 Msa1325260:intron 40.0%
ATCTGCATCCTGTTCCTTTA+TGG + chr8_4:37296578-37296597 None:intergenic 40.0%
TGTGAACCTTCAATCTACAC+TGG - chr8_4:37296606-37296625 Msa1325260:intron 40.0%
ACTAGAGACATTACAGGTGA+TGG - chr8_4:37296642-37296661 Msa1325260:intron 40.0%
! TGGTCTATCTTTTCTGTTGC+CGG - chr8_4:37296797-37296816 Msa1325260:intron 40.0%
TTCAATAGTCAGAAGAAGGG+AGG - chr8_4:37297009-37297028 Msa1325260:intron 40.0%
! GGTTCAACATTTTCTCCAGT+TGG - chr8_4:37297108-37297127 Msa1325260:intron 40.0%
! TCAACATTTTCTCCAGTTGG+TGG - chr8_4:37297111-37297130 Msa1325260:intron 40.0%
CTGACAGTTAATTACTTGCC+AGG - chr8_4:37297613-37297632 Msa1325260:intron 40.0%
!!! ACTTGCCAGGTTGTTTTAGA+TGG - chr8_4:37297626-37297645 Msa1325260:intron 40.0%
TATTCAGCTCCTTTAACTGC+AGG - chr8_4:37297650-37297669 Msa1325260:intron 40.0%
ATTCAGCTCCTTTAACTGCA+GGG - chr8_4:37297651-37297670 Msa1325260:intron 40.0%
GCAAAATTCCCTGCAGTTAA+AGG + chr8_4:37297662-37297681 None:intergenic 40.0%
! TGCAGGGAATTTTGCAAAAC+TGG - chr8_4:37297667-37297686 Msa1325260:intron 40.0%
GAGCGATATACACTGGATAT+TGG + chr8_4:37297746-37297765 None:intergenic 40.0%
!! AGGAAGTCAGTAATGGATTC+AGG + chr8_4:37297888-37297907 None:intergenic 40.0%
CGAAACCTTGGAAACAACTA+TGG - chr8_4:37298186-37298205 Msa1325260:CDS 40.0%
TAGGCTGAACCCTACAAAAT+CGG - chr8_4:37298449-37298468 Msa1325260:intron 40.0%
!! CCCTACAAAATCGGTTTGTA+AGG - chr8_4:37298458-37298477 Msa1325260:intron 40.0%
!! GCCTTACAAACCGATTTTGT+AGG + chr8_4:37298462-37298481 None:intergenic 40.0%
CACTCAGTCACATATCCTTT+AGG - chr8_4:37298546-37298565 Msa1325260:intron 40.0%
GTCACATATCCTTTAGGTGA+TGG - chr8_4:37298552-37298571 Msa1325260:intron 40.0%
!! CATATCCTTTAGGTGATGGA+TGG - chr8_4:37298556-37298575 Msa1325260:intron 40.0%
!! GTGATGGATGGAGCATATAA+TGG - chr8_4:37298568-37298587 Msa1325260:intron 40.0%
CAAGCTATTCTCTCAGAAAC+CGG - chr8_4:37298613-37298632 Msa1325260:intron 40.0%
!! ATGTGTCTTTTGGAAGGATG+GGG - chr8_4:37298801-37298820 Msa1325260:intron 40.0%
TGTTTATGGAGCAGTTGCTA+TGG - chr8_4:37298846-37298865 Msa1325260:intron 40.0%
AAATGATATCCCTCCTAAGC+CGG + chr8_4:37299150-37299169 None:intergenic 40.0%
CTTAGGAGGGATATCATTTG+AGG - chr8_4:37299151-37299170 Msa1325260:intron 40.0%
GAGGGATATCATTTGAGGAA+GGG - chr8_4:37299156-37299175 Msa1325260:intron 40.0%
ATGTGCAGATATACCACCAT+AGG - chr8_4:37299295-37299314 Msa1325260:CDS 40.0%
TGTGCAGATATACCACCATA+GGG - chr8_4:37299296-37299315 Msa1325260:CDS 40.0%
ATTCTCCCCGAGATAAAAAC+CGG - chr8_4:37299325-37299344 Msa1325260:CDS 40.0%
! ATATCCCCGGTTTTTATCTC+GGG + chr8_4:37299334-37299353 None:intergenic 40.0%
! GATATCCCCGGTTTTTATCT+CGG + chr8_4:37299335-37299354 None:intergenic 40.0%
! TTGGCCTTCAATAAGCTTTG+CGG + chr8_4:37299365-37299384 None:intergenic 40.0%
AGACGTACTCAACTTTCCTT+CGG + chr8_4:37299403-37299422 None:intergenic 40.0%
! GAAACCTTTTTACCTGCTCA+GGG + chr8_4:37299443-37299462 None:intergenic 40.0%
! TGAAACCTTTTTACCTGCTC+AGG + chr8_4:37299444-37299463 None:intergenic 40.0%
TTTACAACACAACCTGCATC+TGG + chr8_4:37299528-37299547 None:intergenic 40.0%
CCTAATCTGTTCTGTGGAAG+TGG + chr8_4:37293906-37293925 None:intergenic 45.0%
CCACTTCCACAGAACAGATT+AGG - chr8_4:37293903-37293922 Msa1325260:three_prime_UTR 45.0%
! ACTTTGTGTGGCGGAAGAAA+GGG + chr8_4:37294015-37294034 None:intergenic 45.0%
TTCGAGAAGGTGACTTTGTG+TGG + chr8_4:37294027-37294046 None:intergenic 45.0%
GTGAAGCAGAAGATTCGAGA+AGG + chr8_4:37294040-37294059 None:intergenic 45.0%
! CATCGTCACATTGGCCTAAT+TGG + chr8_4:37294069-37294088 None:intergenic 45.0%
CGTCACTTGGTATAACTCAG+AGG - chr8_4:37294092-37294111 Msa1325260:exon 45.0%
ACGGTGGAAGCAATTAGGAT+TGG + chr8_4:37294145-37294164 None:intergenic 45.0%
ACTGAACGGTGGAAGCAATT+AGG + chr8_4:37294150-37294169 None:intergenic 45.0%
AGAAGACACGTAAGGAACCA+TGG + chr8_4:37294179-37294198 None:intergenic 45.0%
ATACAGAATCGCATTCGCAG+CGG + chr8_4:37294203-37294222 None:intergenic 45.0%
GAATGCGATTCTGTATTCGC+CGG - chr8_4:37294207-37294226 Msa1325260:intron 45.0%
!! GTTCTAGGAACCTTTGTGTC+CGG + chr8_4:37294229-37294248 None:intergenic 45.0%
GACACAAAGGTTCCTAGAAC+TGG - chr8_4:37294229-37294248 Msa1325260:intron 45.0%
AGAGCAACTTCACCAGTTCT+AGG + chr8_4:37294244-37294263 None:intergenic 45.0%
GAACTGGTGAAGTTGCTCTT+AGG - chr8_4:37294245-37294264 Msa1325260:intron 45.0%
CCTGTATGGCCTTCATGTTA+GGG + chr8_4:37294288-37294307 None:intergenic 45.0%
ACCTGTATGGCCTTCATGTT+AGG + chr8_4:37294289-37294308 None:intergenic 45.0%
GAGATTACTAGGCTGAATCG+CGG + chr8_4:37294494-37294513 None:intergenic 45.0%
CTGTCACCGAAGAGATTACT+AGG + chr8_4:37294505-37294524 None:intergenic 45.0%
AACGTTCCAACAGTCCTGTA+TGG + chr8_4:37294585-37294604 None:intergenic 45.0%
ATACAGGACTGTTGGAACGT+TGG - chr8_4:37294584-37294603 Msa1325260:CDS 45.0%
TTGGAACGTTGGTGTGAAGT+TGG - chr8_4:37294595-37294614 Msa1325260:CDS 45.0%
CCATCATAAGTCCCATGACT+TGG + chr8_4:37294653-37294672 None:intergenic 45.0%
CCAAGTCATGGGACTTATGA+TGG - chr8_4:37294650-37294669 Msa1325260:CDS 45.0%
AGTCATGGGACTTATGATGG+TGG - chr8_4:37294653-37294672 Msa1325260:CDS 45.0%
GTCATGGGACTTATGATGGT+GGG - chr8_4:37294654-37294673 Msa1325260:CDS 45.0%
!! GGACTTATGATGGTGGGATT+TGG - chr8_4:37294660-37294679 Msa1325260:CDS 45.0%
!! ATTTGGTCCTCCGGATTAGT+CGG - chr8_4:37294677-37294696 Msa1325260:CDS 45.0%
TATAAAGCACGGACACTCCT+GGG - chr8_4:37294842-37294861 Msa1325260:CDS 45.0%
! GTCAGTGTCTGTGTCTTGTT+CGG - chr8_4:37294947-37294966 Msa1325260:intron 45.0%
! GGGAGTAGCTAGTTTCTAAC+TGG - chr8_4:37295193-37295212 Msa1325260:intron 45.0%
ATCTGTTGAGGATTCCACAG+AGG - chr8_4:37295303-37295322 Msa1325260:intron 45.0%
GTTCCATAAGGTTTCCTCTG+TGG + chr8_4:37295320-37295339 None:intergenic 45.0%
TTCCCCTCCATTGTTCCATA+AGG + chr8_4:37295332-37295351 None:intergenic 45.0%
AAGTATACCAGCGGAACTGA+AGG - chr8_4:37296055-37296074 Msa1325260:intron 45.0%
ACTGAAGGAAAAGGCCTCTT+TGG - chr8_4:37296070-37296089 Msa1325260:intron 45.0%
! GATATCAGCATTTTGCAGGG+GGG - chr8_4:37296532-37296551 Msa1325260:intron 45.0%
GGCAGAACTAGAGACATTAC+AGG - chr8_4:37296636-37296655 Msa1325260:intron 45.0%
GATCTTGATATTGCGGCAAC+AGG - chr8_4:37296770-37296789 Msa1325260:intron 45.0%
GGCAACAGAAAAGATAGACC+AGG + chr8_4:37296798-37296817 None:intergenic 45.0%
! GGTCTATCTTTTCTGTTGCC+GGG - chr8_4:37296798-37296817 Msa1325260:intron 45.0%
! GTCTATCTTTTCTGTTGCCG+GGG - chr8_4:37296799-37296818 Msa1325260:intron 45.0%
GGCAATACACGGAATATCCA+CGG - chr8_4:37296820-37296839 Msa1325260:intron 45.0%
! TTTTGTAGGCTTTCAGGGAG+AGG - chr8_4:37297054-37297073 Msa1325260:intron 45.0%
TTTCTCTCTTCTCCACCAAC+TGG + chr8_4:37297126-37297145 None:intergenic 45.0%
GAGAAAAACTGCCACCATTC+AGG - chr8_4:37297140-37297159 Msa1325260:intron 45.0%
CGCAAACATTTCAGTCAGCT+AGG - chr8_4:37297935-37297954 Msa1325260:intron 45.0%
!! GGAAGTATGGTTTTCAGCTG+TGG - chr8_4:37298269-37298288 Msa1325260:intron 45.0%
GTTCAGCCTAACCCAAATGA+TGG + chr8_4:37298439-37298458 None:intergenic 45.0%
ATGCTCCATCCATCACCTAA+AGG + chr8_4:37298564-37298583 None:intergenic 45.0%
!! ACCACTGGTCTTATCTAGTC+CGG + chr8_4:37298635-37298654 None:intergenic 45.0%
CAAGGGAACATTGTAACCAC+TGG + chr8_4:37298650-37298669 None:intergenic 45.0%
CAGTGGTTACAATGTTCCCT+TGG - chr8_4:37298648-37298667 Msa1325260:intron 45.0%
! AAGGCTTTTAGCGGGGAAAT+AGG + chr8_4:37298957-37298976 None:intergenic 45.0%
! TCTTTTCCTCTGTTGTAGGC+CGG - chr8_4:37299128-37299147 Msa1325260:intron 45.0%
GGAGGGATATCATTTGAGGA+AGG - chr8_4:37299155-37299174 Msa1325260:intron 45.0%
GAGAATATCTCTCCCTATGG+TGG + chr8_4:37299311-37299330 None:intergenic 45.0%
TTCTCCCCGAGATAAAAACC+GGG - chr8_4:37299326-37299345 Msa1325260:CDS 45.0%
! TATCCCCGGTTTTTATCTCG+GGG + chr8_4:37299333-37299352 None:intergenic 45.0%
CGTTCCGCAAAGCTTATTGA+AGG - chr8_4:37299358-37299377 Msa1325260:CDS 45.0%
CAACCTGCATCTGGAAAATC+AGG + chr8_4:37299519-37299538 None:intergenic 45.0%
!! AATAAAAAATATTACTAATT+AGG + chr8_4:37299109-37299128 None:intergenic 5.0%
AAAGGGACACGTGTACACTG+TGG + chr8_4:37293875-37293894 None:intergenic 50.0%
GCGAGTGATCGGAATGTTGA+AGG + chr8_4:37293987-37294006 None:intergenic 50.0%
! GACTTTGTGTGGCGGAAGAA+AGG + chr8_4:37294016-37294035 None:intergenic 50.0%
GAGAAGGTGACTTTGTGTGG+CGG + chr8_4:37294024-37294043 None:intergenic 50.0%
GTGACGTGTCATCGTCACAT+TGG + chr8_4:37294078-37294097 None:intergenic 50.0%
TGTGACGATGACACGTCACT+TGG - chr8_4:37294079-37294098 Msa1325260:three_prime_UTR 50.0%
CATGGAACTGAACTGAACGG+TGG + chr8_4:37294161-37294180 None:intergenic 50.0%
CACCGTTCAGTTCAGTTCCA+TGG - chr8_4:37294159-37294178 Msa1325260:CDS 50.0%
TACAGAATCGCATTCGCAGC+GGG + chr8_4:37294202-37294221 None:intergenic 50.0%
TCTGTATTCGCCGGACACAA+AGG - chr8_4:37294216-37294235 Msa1325260:intron 50.0%
CCTTCATGTTAGGGCTTGCA+GGG + chr8_4:37294279-37294298 None:intergenic 50.0%
CCCTAACATGAAGGCCATAC+AGG - chr8_4:37294285-37294304 Msa1325260:intron 50.0%
TGTGTTGGGTCAGTCCATAC+AGG - chr8_4:37294568-37294587 Msa1325260:intron 50.0%
GTCAGTCCATACAGGACTGT+TGG - chr8_4:37294576-37294595 Msa1325260:intron 50.0%
!! TCCTCCGGATTAGTCGGTAT+TGG - chr8_4:37294683-37294702 Msa1325260:CDS 50.0%
!! CCTCCGGATTAGTCGGTATT+GGG - chr8_4:37294684-37294703 Msa1325260:CDS 50.0%
! CGTCCCAATACCGACTAATC+CGG + chr8_4:37294690-37294709 None:intergenic 50.0%
!! CGGATTAGTCGGTATTGGGA+CGG - chr8_4:37294688-37294707 Msa1325260:intron 50.0%
CTATAAAGCACGGACACTCC+TGG - chr8_4:37294841-37294860 Msa1325260:CDS 50.0%
ATGAAGCACGGATACGGACA+CGG + chr8_4:37294976-37294995 None:intergenic 50.0%
ACCAGCGGAACTGAAGGAAA+AGG - chr8_4:37296061-37296080 Msa1325260:intron 50.0%
GGATATTCCGTGTATTGCCC+CGG + chr8_4:37296819-37296838 None:intergenic 50.0%
TTTGAAGGAGTCACTGACCG+TGG + chr8_4:37296840-37296859 None:intergenic 50.0%
! GGTTTTCAGCTGTGGAAGAC+TGG - chr8_4:37298277-37298296 Msa1325260:intron 50.0%
! ACCGGACTAGATAAGACCAG+TGG - chr8_4:37298631-37298650 Msa1325260:intron 50.0%
CCAGCGGGCATTATTTCCAA+GGG + chr8_4:37298667-37298686 None:intergenic 50.0%
TCCAGCGGGCATTATTTCCA+AGG + chr8_4:37298668-37298687 None:intergenic 50.0%
AAGGGGCTCAAATTGTCCAG+CGG + chr8_4:37298683-37298702 None:intergenic 50.0%
GGCTCATAACGAAGCTTCTG+AGG - chr8_4:37298867-37298886 Msa1325260:intron 50.0%
GGGGAGAATATCTCTCCCTA+TGG + chr8_4:37299314-37299333 None:intergenic 50.0%
TCTCCCCGAGATAAAAACCG+GGG - chr8_4:37299327-37299346 Msa1325260:CDS 50.0%
TGCGGAACGAATGATATCCC+CGG + chr8_4:37299347-37299366 None:intergenic 50.0%
AACTTTCCTTCGGCAACACG+AGG + chr8_4:37299393-37299412 None:intergenic 50.0%
TGCTCCCTGAGCAGGTAAAA+AGG - chr8_4:37299436-37299455 Msa1325260:CDS 50.0%
! CAGCCTGATTTTCCAGATGC+AGG - chr8_4:37299513-37299532 Msa1325260:CDS 50.0%
TGCGCGCCTAATCTGTTCTG+TGG + chr8_4:37293912-37293931 None:intergenic 55.0%
! AAAGGGTGGTGGCGAGTGAT+CGG + chr8_4:37293998-37294017 None:intergenic 55.0%
! TTGTGTGGCGGAAGAAAGGG+TGG + chr8_4:37294012-37294031 None:intergenic 55.0%
CCCTGCAAGCCCTAACATGA+AGG - chr8_4:37294276-37294295 Msa1325260:intron 55.0%
GCCTTCATGTTAGGGCTTGC+AGG + chr8_4:37294280-37294299 None:intergenic 55.0%
GTGGTGAAGGCTTGAGACCT+AGG - chr8_4:37294370-37294389 Msa1325260:intron 55.0%
! CTTGTGAGGAGCACACTCCT+AGG + chr8_4:37294390-37294409 None:intergenic 55.0%
! CTAGGAGTGTGCTCCTCACA+AGG - chr8_4:37294388-37294407 Msa1325260:intron 55.0%
! AGGCTGAATCGCGGACTACT+AGG + chr8_4:37294485-37294504 None:intergenic 55.0%
!! GATGGTGGGATTTGGTCCTC+CGG - chr8_4:37294668-37294687 Msa1325260:CDS 55.0%
! CCCAATACCGACTAATCCGG+AGG + chr8_4:37294687-37294706 None:intergenic 55.0%
! GCCTTTTCCTTCAGTTCCGC+TGG + chr8_4:37296065-37296084 None:intergenic 55.0%
ATATTGCGGCAACAGGCACC+TGG - chr8_4:37296777-37296796 Msa1325260:intron 55.0%
TCTGTTGCCGGGGCAATACA+CGG - chr8_4:37296809-37296828 Msa1325260:intron 55.0%
CCCTTGGAAATAATGCCCGC+TGG - chr8_4:37298664-37298683 Msa1325260:intron 55.0%
AGGGGCTCAAATTGTCCAGC+GGG + chr8_4:37298682-37298701 None:intergenic 55.0%
! TGTTGTAGGCCGGCTTAGGA+GGG - chr8_4:37299138-37299157 Msa1325260:intron 55.0%
TTTCCTTCGGCAACACGAGG+CGG + chr8_4:37299390-37299409 None:intergenic 55.0%
TCTTACAGTGCTCCCTGAGC+AGG - chr8_4:37299428-37299447 Msa1325260:CDS 55.0%
! TGTGGCGGAAGAAAGGGTGG+TGG + chr8_4:37294009-37294028 None:intergenic 60.0%
GCAGCGGGAGAAGACACGTA+AGG + chr8_4:37294187-37294206 None:intergenic 60.0%
GCACGGACACTCCTGGGATA+AGG - chr8_4:37294848-37294867 Msa1325260:CDS 60.0%
TGTCGGTCACGCCTTATCCC+AGG + chr8_4:37294862-37294881 None:intergenic 60.0%
CCTAAGCCGGCCTACAACAG+AGG + chr8_4:37299137-37299156 None:intergenic 60.0%
! CCTCTGTTGTAGGCCGGCTT+AGG - chr8_4:37299134-37299153 Msa1325260:intron 60.0%
! CTGTTGTAGGCCGGCTTAGG+AGG - chr8_4:37299137-37299156 Msa1325260:intron 60.0%
TCGGCAACACGAGGCGGTCT+TGG + chr8_4:37299384-37299403 None:intergenic 65.0%
AGACCGCCTCGTGTTGCCGA+AGG - chr8_4:37299384-37299403 Msa1325260:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 37293843 37299677 37293843 ID=Msa1325260;Name=Msa1325260
chr8_4 mRNA 37293843 37299677 37293843 ID=Msa1325260-mRNA-1;Parent=Msa1325260;Name=Msa1325260-mRNA-1;_AED=0.10;_eAED=0.10;_QI=119|1|1|1|1|1|11|263|428
chr8_4 exon 37293843 37294217 37293843 ID=Msa1325260-mRNA-1:exon:11427;Parent=Msa1325260-mRNA-1
chr8_4 exon 37294325 37294374 37294325 ID=Msa1325260-mRNA-1:exon:11426;Parent=Msa1325260-mRNA-1
chr8_4 exon 37294581 37294703 37294581 ID=Msa1325260-mRNA-1:exon:11425;Parent=Msa1325260-mRNA-1
chr8_4 exon 37294794 37294952 37294794 ID=Msa1325260-mRNA-1:exon:11424;Parent=Msa1325260-mRNA-1
chr8_4 exon 37295832 37295885 37295832 ID=Msa1325260-mRNA-1:exon:11423;Parent=Msa1325260-mRNA-1
chr8_4 exon 37296359 37296458 37296359 ID=Msa1325260-mRNA-1:exon:11422;Parent=Msa1325260-mRNA-1
chr8_4 exon 37296679 37296728 37296679 ID=Msa1325260-mRNA-1:exon:11421;Parent=Msa1325260-mRNA-1
chr8_4 exon 37296863 37296970 37296863 ID=Msa1325260-mRNA-1:exon:11420;Parent=Msa1325260-mRNA-1
chr8_4 exon 37297402 37297497 37297402 ID=Msa1325260-mRNA-1:exon:11419;Parent=Msa1325260-mRNA-1
chr8_4 exon 37298150 37298239 37298150 ID=Msa1325260-mRNA-1:exon:11418;Parent=Msa1325260-mRNA-1
chr8_4 exon 37299214 37299677 37299214 ID=Msa1325260-mRNA-1:exon:11417;Parent=Msa1325260-mRNA-1
chr8_4 five_prime_UTR 37299559 37299677 37299559 ID=Msa1325260-mRNA-1:five_prime_utr;Parent=Msa1325260-mRNA-1
chr8_4 CDS 37299214 37299558 37299214 ID=Msa1325260-mRNA-1:cds;Parent=Msa1325260-mRNA-1
chr8_4 CDS 37298150 37298239 37298150 ID=Msa1325260-mRNA-1:cds;Parent=Msa1325260-mRNA-1
chr8_4 CDS 37297402 37297497 37297402 ID=Msa1325260-mRNA-1:cds;Parent=Msa1325260-mRNA-1
chr8_4 CDS 37296863 37296970 37296863 ID=Msa1325260-mRNA-1:cds;Parent=Msa1325260-mRNA-1
chr8_4 CDS 37296679 37296728 37296679 ID=Msa1325260-mRNA-1:cds;Parent=Msa1325260-mRNA-1
chr8_4 CDS 37296359 37296458 37296359 ID=Msa1325260-mRNA-1:cds;Parent=Msa1325260-mRNA-1
chr8_4 CDS 37295832 37295885 37295832 ID=Msa1325260-mRNA-1:cds;Parent=Msa1325260-mRNA-1
chr8_4 CDS 37294794 37294952 37294794 ID=Msa1325260-mRNA-1:cds;Parent=Msa1325260-mRNA-1
chr8_4 CDS 37294581 37294703 37294581 ID=Msa1325260-mRNA-1:cds;Parent=Msa1325260-mRNA-1
chr8_4 CDS 37294325 37294374 37294325 ID=Msa1325260-mRNA-1:cds;Parent=Msa1325260-mRNA-1
chr8_4 CDS 37294106 37294217 37294106 ID=Msa1325260-mRNA-1:cds;Parent=Msa1325260-mRNA-1
chr8_4 three_prime_UTR 37293843 37294105 37293843 ID=Msa1325260-mRNA-1:three_prime_utr;Parent=Msa1325260-mRNA-1
Gene Sequence

>Msa1325260

ATGGCGTATCCTCTCTCTTCTTCCTTCAACATTCCGATCACTCGCCACCACCCTTTCTTCCGCCACACAAAGTCACCTTCTCGAATCTTCTGCTTCACAAAGAGCCAATTAGGCCAATGTGACGATGACACGTCACTTGGTATAACTCAGAGGATAATGAAGCAATTGAAGAGTGTGATTCCAATCCTAATTGCTTCCACCGTTCAGTTCAGTTCCATGGTTCCTTACGTGTCTTCTCCCGCTGCGAATGCGATTCTGTATTCGCCGGACACAAAGGTTCCTAGAACTGGTGAAGTTGCTCTTAGGAGAGCTATCCCTGCAAGCCCTAACATGAAGGCCATACAGGAGACTCTTGAAGATATTTCGTATCTGTTGAGGATTCCACAGAGGAAACCTTATGGAACAATGGAGGGGAACGTAAAGAAAGTTTTGAAGATAGCGGTAGATGAAAAGGATTCTATATTGGCAAGTATACCAGCGGAACTGAAGGAAAAGGCCTCTTTGGTGCATTCAACTTTAATAGATGGGAAGGGGGGTTTGCAAGTTCTCCTTCAATCCATAAAGGAACAGGATGCAGATAAAGTATCTGTGAACCTTCAATCTACACTGGATATTGTGGCAGAACTAGAGACATTACAGGCACCTGGTCTATCTTTTCTGTTGCCGGGGCAATACACGGAATATCCACGGCTTTCAGGGAGAGGAACTGTTGAGTTTGTCATTGAGAAAGGAGACGGTTCAACATTTTCTCCAGTTGGTGGAGAAGAGAGAAAAACTGCCACCATTCAGGTTGTTTTAGATGGATATTCAGCTCCTTTAACTGCAGGGAATTTTGCAAAACTGGTGATGGATGGAGCATATAATGGCATAAAACTCAACTGTTCCAATCAAGCTATTCTCTCAGAAACCGGACTAGATAAGACCAGTGGTTACAATGTTCCCTTGGAAATAATGCCCGCTGGACAATTTGAGCCCCTTTATAAAACAACATTAAGTGTACAGGATGGGGAACTGCCAGTTCTGCCTCTATCTGTTTATGGAGCAGTTGCTATGGCTCATAACGAAGCTTCTGAGGAGTATTCATCACCTTATCAATTTTTCTTCTATCTCTATGATAAAAGAAATGCCGGCTTAGGAGGGATATCATTTGAGGAAGGGCAATTTTCAGTTTTTGGATATACCACCATAGGGAGAGATATTCTCCCCGAGATAAAAACCGGGGATATCATTCGTTCCGCAAAGCTTATTGAAGGCCAAGACCGCCTCGTGTTGCCGAAGGAAAGTTGA

Protein sequence

>Msa1325260

MAYPLSSSFNIPITRHHPFFRHTKSPSRIFCFTKSQLGQCDDDTSLGITQRIMKQLKSVIPILIASTVQFSSMVPYVSSPAANAILYSPDTKVPRTGEVALRRAIPASPNMKAIQETLEDISYLLRIPQRKPYGTMEGNVKKVLKIAVDEKDSILASIPAELKEKASLVHSTLIDGKGGLQVLLQSIKEQDADKVSVNLQSTLDIVAELETLQAPGLSFLLPGQYTEYPRLSGRGTVEFVIEKGDGSTFSPVGGEERKTATIQVVLDGYSAPLTAGNFAKLVMDGAYNGIKLNCSNQAILSETGLDKTSGYNVPLEIMPAGQFEPLYKTTLSVQDGELPVLPLSVYGAVAMAHNEASEEYSSPYQFFFYLYDKRNAGLGGISFEEGQFSVFGYTTIGRDILPEIKTGDIIRSAKLIEGQDRLVLPKES*