AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1225280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1225280 MtrunA17_Chr3g0131031 97.727 528 12 0 1 528 1 528 0.0 1055
Msa1225280 MtrunA17_Chr8g0385271 83.172 517 82 1 12 523 7 523 0.0 875
Msa1225280 MtrunA17_Chr3g0135611 73.021 341 92 0 104 444 85 425 0.0 518
Msa1225280 MtrunA17_Chr4g0008821 64.232 397 136 2 48 444 38 428 1.30e-180 516
Msa1225280 MtrunA17_Chr4g0045871 89.706 68 7 0 407 474 5 72 8.35e-35 126
Msa1225280 MtrunA17_Chr7g0235891 65.217 46 16 0 393 438 88 133 6.84e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1225280 AT2G30390.1 79.476 458 81 3 82 527 56 512 0.0 722
Msa1225280 AT2G30390.2 77.778 468 81 4 82 527 56 522 0.0 713
Msa1225280 AT5G26030.1 72.700 337 92 0 109 445 84 420 0.0 536
Msa1225280 AT5G26030.2 72.700 337 92 0 109 445 84 420 0.0 536

Find 133 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAATGTATTTACCTAAT+TGG 0.166560 8_1:+90622006 None:intergenic
TAGAATCTGGTATAGAAAAT+TGG 0.193496 8_1:-90621822 Msa1225280:CDS
CGTAGCCTTCTCTGCTCTTT+GGG 0.196098 8_1:+90624324 None:intergenic
CCCAGTTTGTATCTGTTCTA+AGG 0.205657 8_1:-90624349 Msa1225280:CDS
TGAAGAAAACTAAATATTCT+TGG 0.238006 8_1:+90624383 None:intergenic
CAGCATATGACTCGCAAAAT+AGG 0.241519 8_1:-90621376 Msa1225280:CDS
TCCCTTCACCCTTGCCTATC+AGG 0.242398 8_1:-90622274 Msa1225280:intron
GAATTCACTTATTTACTATA+TGG 0.252303 8_1:+90620934 None:intergenic
GCGTAGCCTTCTCTGCTCTT+TGG 0.271574 8_1:+90624323 None:intergenic
ACTATTGTCTCATCTGTATA+GGG 0.288809 8_1:+90622069 None:intergenic
TGTACGTTGGCATGCGTTAC+TGG 0.292975 8_1:-90623254 Msa1225280:CDS
TACGGAGGACGCTTGAAATT+AGG 0.301928 8_1:+90626490 None:intergenic
GAATATTATCGCCCTCTCTT+AGG 0.311916 8_1:-90621211 Msa1225280:CDS
ACCCTCCTTCATTTCTGATT+TGG 0.315714 8_1:-90621773 Msa1225280:CDS
ACATATTGTGTAGATTAAAA+AGG 0.324340 8_1:-90622964 Msa1225280:intron
AGAATCTGGTATAGAAAATT+GGG 0.325244 8_1:-90621821 Msa1225280:CDS
CGGAAGTGTACAAGAGTTAT+TGG 0.329755 8_1:-90621399 Msa1225280:CDS
AACTATTGTCTCATCTGTAT+AGG 0.332380 8_1:+90622068 None:intergenic
CCCTTAGAACAGATACAAAC+TGG 0.345905 8_1:+90624348 None:intergenic
GTATGTTGGCTGTTCCAATT+AGG 0.349234 8_1:-90622020 Msa1225280:intron
CTACTGTACTACAATTAGTA+TGG 0.364739 8_1:+90626731 None:intergenic
TGATGTTGAATACAAAGAAT+TGG 0.365400 8_1:-90621848 Msa1225280:CDS
CACATCATGATTATGTCATC+TGG 0.376301 8_1:+90620980 None:intergenic
AAAAGTACACTACCTCTTTA+GGG 0.385426 8_1:+90622639 None:intergenic
AGACTTGAAGAAATCTCTTT+CGG 0.388879 8_1:-90623298 Msa1225280:CDS
AGAAGCGTTGTTGAGTGTAT+AGG 0.390375 8_1:+90626513 None:intergenic
CTTTGGTTGGTTGGTTTACA+AGG 0.394618 8_1:+90626849 None:intergenic
TGGCTCAAGCTTACGTCTAC+TGG 0.395244 8_1:-90622883 Msa1225280:CDS
CGCCGGTGATAGTGTGGGAA+TGG 0.399628 8_1:-90621343 Msa1225280:CDS
AAAGAATTGGCTCTAGAATC+TGG 0.400419 8_1:-90621835 Msa1225280:CDS
GCCGGTGATAGTGTGGGAAT+GGG 0.419183 8_1:-90621342 Msa1225280:CDS
GTATTACCGGGTCTGCAAAA+AGG 0.425292 8_1:+90624732 None:intergenic
AGCATATGACTCGCAAAATA+GGG 0.434303 8_1:-90621375 Msa1225280:CDS
TGCACATCTTCTAGAGTCTC+TGG 0.435104 8_1:+90624770 None:intergenic
ACTGCCATGGCACCAGCATA+TGG 0.437930 8_1:+90621727 None:intergenic
CTTACATCTGATGATAAGAT+TGG 0.439061 8_1:-90624818 Msa1225280:CDS
TCCTCCATCTCTGCCTTGTA+AGG 0.440499 8_1:+90622345 None:intergenic
TTTAGTAGCTCGAACAGATC+AGG 0.450862 8_1:-90624858 Msa1225280:CDS
CACTGAGGAAGCTATTGAAC+AGG 0.452384 8_1:-90623223 Msa1225280:intron
TAGGAGGCGGAAGAAGTAGA+AGG 0.462934 8_1:+90626532 None:intergenic
TGGGGTGCCTCTTGCTTATG+TGG 0.465776 8_1:-90622382 Msa1225280:CDS
TTCTTCTTACAGAGTAGAGT+TGG 0.465830 8_1:-90622111 Msa1225280:intron
AGCACACAGTATTACCTTCA+TGG 0.466392 8_1:-90622730 Msa1225280:CDS
CCAGTTTGTATCTGTTCTAA+GGG 0.466703 8_1:-90624348 Msa1225280:CDS
CAAAATTTCAATATTGTGCA+AGG 0.474841 8_1:+90621082 None:intergenic
TGGGGCCGTGTTCCTGCTCT+AGG 0.479445 8_1:-90621802 Msa1225280:CDS
AGAGAAGGCTACGCTTCAAT+TGG 0.484687 8_1:-90624314 Msa1225280:CDS
TCAACGTGAAGGATACATAA+AGG 0.485704 8_1:-90622705 Msa1225280:CDS
ATTGAAAATTGTGGATAAAG+TGG 0.485887 8_1:+90622915 None:intergenic
ATGCCAACGTACACTTCAGC+AGG 0.486817 8_1:+90623264 None:intergenic
GGAGTTTGAAGCTTCATAGC+TGG 0.489093 8_1:+90626574 None:intergenic
TTGAAAATTGTGGATAAAGT+GGG 0.490648 8_1:+90622916 None:intergenic
AAAAGGAGTGAAAAGTATGT+TGG 0.492369 8_1:-90622034 Msa1225280:CDS
TAGACGTAAGCTTGAGCCAC+TGG 0.492475 8_1:+90622887 None:intergenic
GCCTCTTGCTTATGTGGAAG+AGG 0.493969 8_1:-90622376 Msa1225280:CDS
CTCCACTGTCTTTGAGAGCA+TGG 0.495279 8_1:+90621174 None:intergenic
TCAATAGCTTCCTCAGTGAA+TGG 0.508166 8_1:+90623228 None:intergenic
CTTCTGCTCTGGAGCTCATG+TGG 0.509145 8_1:-90625005 Msa1225280:CDS
TTCAAGCCTCGAAGCTCGAC+AGG 0.509317 8_1:-90621704 Msa1225280:intron
TGTGCAAGGGAATGACTTGA+TGG 0.510991 8_1:+90621096 None:intergenic
GGTGATAACGTGGCATGAGT+TGG 0.511540 8_1:+90626553 None:intergenic
ATCTGCCAAATCAGAAATGA+AGG 0.511624 8_1:+90621768 None:intergenic
AGAATACCTGTCGAGCTTCG+AGG 0.516022 8_1:+90621698 None:intergenic
TACCTGATAGGCAAGGGTGA+AGG 0.519996 8_1:+90622272 None:intergenic
GCGATCTGAAGCAAAACCCT+TGG 0.524130 8_1:-90624924 Msa1225280:CDS
GAAGGCTACGCTTCAATTGG+TGG 0.524264 8_1:-90624311 Msa1225280:CDS
CCCCATTCCCACACTATCAC+CGG 0.525373 8_1:+90621341 None:intergenic
ACCTGATAGGCAAGGGTGAA+GGG 0.530104 8_1:+90622273 None:intergenic
CTCTGCCTTGTAAGGATCAC+CGG 0.531288 8_1:+90622353 None:intergenic
TGGCAGTCTTTGGTTCCGCT+CGG 0.531313 8_1:-90621419 Msa1225280:intron
GTCTACTGGAGAGTATATTC+CGG 0.534732 8_1:-90622869 Msa1225280:intron
GCATCAGTTATACGTCTAAG+AGG 0.534824 8_1:+90624281 None:intergenic
GGAGTGTTATTGCTAAACCT+TGG 0.534970 8_1:-90624797 Msa1225280:CDS
GTGTTATTGCTAAACCTTGG+AGG 0.536763 8_1:-90624794 Msa1225280:CDS
CTGCCATGGCACCAGCATAT+GGG 0.537209 8_1:+90621728 None:intergenic
CTAGAGTCTCTGGACCTCCA+AGG 0.539949 8_1:+90624780 None:intergenic
CTTGCTTATGTGGAAGAGGC+CGG 0.540854 8_1:-90622372 Msa1225280:CDS
GATGAGACAATAGTTGAACT+TGG 0.541880 8_1:-90622060 Msa1225280:CDS
TGCCATCGCCGGTGATAGTG+TGG 0.545471 8_1:-90621349 Msa1225280:CDS
CACATGAGCTCCAGAGCAGA+AGG 0.547619 8_1:+90625006 None:intergenic
TGATCCTTACAAGGCAGAGA+TGG 0.558244 8_1:-90622349 Msa1225280:CDS
GTAGCCTTCTCTGCTCTTTG+GGG 0.559986 8_1:+90624325 None:intergenic
CTGCTCTGGAGCTCATGTGG+AGG 0.561511 8_1:-90625002 Msa1225280:CDS
AGGGCCCCAAAGAGCAGAGA+AGG 0.564829 8_1:-90624329 Msa1225280:CDS
GAGGGTTCACATCCTAGAGC+AGG 0.569494 8_1:+90621790 None:intergenic
AAAAGTGCTGAAACTTGGAA+TGG 0.570829 8_1:-90621311 Msa1225280:CDS
AGTGATTGGTTGGAAACCAA+GGG 0.571366 8_1:+90624908 None:intergenic
AAAATTTCAATATTGTGCAA+GGG 0.574118 8_1:+90621083 None:intergenic
AAAGGATGGAGTTACAAAGC+TGG 0.574958 8_1:-90622946 Msa1225280:CDS
AACCAAAGGTCGAAAAGCAA+AGG 0.577475 8_1:-90626834 Msa1225280:five_prime_UTR
GGAATGTGTGGATTTGATCA+TGG 0.578572 8_1:-90622325 Msa1225280:CDS
GGCTACGCTTCAATTGGTGG+TGG 0.579463 8_1:-90624308 Msa1225280:CDS
ACAGATACAAACTGGGCCAA+TGG 0.580157 8_1:+90624356 None:intergenic
GGCAGAGATGGAGGAATGTG+TGG 0.580461 8_1:-90622337 Msa1225280:CDS
AAATAGGGAGTTGCCATCGC+CGG 0.581354 8_1:-90621360 Msa1225280:CDS
CTGGTTGATATTGAAAATTG+TGG 0.582519 8_1:+90622906 None:intergenic
GAGTGATTGGTTGGAAACCA+AGG 0.584680 8_1:+90624907 None:intergenic
TAGACGTATAACTGATGCAC+AGG 0.586568 8_1:-90624276 Msa1225280:intron
AGAGGCCGGTGATCCTTACA+AGG 0.588173 8_1:-90622358 Msa1225280:CDS
TCTCCCATATGCTGGTGCCA+TGG 0.590481 8_1:-90621731 Msa1225280:CDS
ATTGAAAGTCTCCCATATGC+TGG 0.593938 8_1:-90621739 Msa1225280:CDS
TTCGAGGCTTGAAACTGCCA+TGG 0.598287 8_1:+90621714 None:intergenic
CCGGTGATAGTGTGGGAATG+GGG 0.604868 8_1:-90621341 Msa1225280:CDS
AGATTCATTCACCTAAGAGA+GGG 0.609385 8_1:+90621200 None:intergenic
TCCCACACTATCACCGGCGA+TGG 0.610674 8_1:+90621347 None:intergenic
GTTGTTGAGTGTATAGGAGG+CGG 0.610694 8_1:+90626519 None:intergenic
GTAGAGTTGGACCTGTGGAA+TGG 0.613496 8_1:-90622098 Msa1225280:CDS
CCTTCACGTTGATACCATGA+AGG 0.613635 8_1:+90622716 None:intergenic
TCCTTACAAGGCAGAGATGG+AGG 0.613774 8_1:-90622346 Msa1225280:CDS
GAGATTCATTCACCTAAGAG+AGG 0.614460 8_1:+90621199 None:intergenic
CATAGCTGGAAAACTTGTTG+AGG 0.616636 8_1:+90626588 None:intergenic
ATGACATAATCATGATGTGA+TGG 0.618035 8_1:-90620976 Msa1225280:three_prime_UTR
AGCGTTGTTGAGTGTATAGG+AGG 0.618477 8_1:+90626516 None:intergenic
GCCTCTTCCACATAAGCAAG+AGG 0.629638 8_1:+90622375 None:intergenic
CACATCCTAGAGCAGGAACA+CGG 0.630017 8_1:+90621797 None:intergenic
CCTTCATGGTATCAACGTGA+AGG 0.631668 8_1:-90622716 Msa1225280:CDS
AGGGCGATAATATTCCCCAT+TGG 0.635517 8_1:+90621219 None:intergenic
TGCCAAATCAGAAATGAAGG+AGG 0.636616 8_1:+90621771 None:intergenic
CCTTAGAACAGATACAAACT+GGG 0.637491 8_1:+90624349 None:intergenic
GCCAAATCAGAAATGAAGGA+GGG 0.639074 8_1:+90621772 None:intergenic
TGGTTGGTTGGTTTACAAGG+AGG 0.641028 8_1:+90626852 None:intergenic
AACCATGCTCTCAAAGACAG+TGG 0.641416 8_1:-90621176 Msa1225280:three_prime_UTR
GCCATCGCCGGTGATAGTGT+GGG 0.643544 8_1:-90621348 Msa1225280:CDS
CTTGTAAACCAACCAACCAA+AGG 0.644255 8_1:-90626848 Msa1225280:five_prime_UTR
CTGTACTACAATTAGTATGG+AGG 0.646140 8_1:+90626734 None:intergenic
TGAGAGGTACAGATTGCCTG+TGG 0.666000 8_1:+90625037 None:intergenic
ACAGAGTAGAGTTGGACCTG+TGG 0.670362 8_1:-90622103 Msa1225280:intron
GAATCTGGTATAGAAAATTG+GGG 0.677200 8_1:-90621820 Msa1225280:CDS
GTCCCTGCTGAAGTGTACGT+TGG 0.678902 8_1:-90623267 Msa1225280:CDS
TGCCAACGTACACTTCAGCA+GGG 0.687637 8_1:+90623265 None:intergenic
AACTCTTGTACACTTCCGAG+CGG 0.698633 8_1:+90621404 None:intergenic
AGAAGTAGAAGGTGATAACG+TGG 0.709400 8_1:+90626543 None:intergenic
TTACTGGCATCCATTCACTG+AGG 0.806235 8_1:-90623238 Msa1225280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAGAAAAAAATAAAATCC+TGG - chr8_1:90621428-90621447 Msa1225280:intron 15.0%
!! GAATTGTTATAAAAATTAGT+TGG - chr8_1:90621761-90621780 Msa1225280:CDS 15.0%
!!! ATGAATAAATAATCATTTTC+CGG - chr8_1:90622234-90622253 Msa1225280:intron 15.0%
!!! TATATTATATTTACTTTTGC+AGG - chr8_1:90622727-90622746 Msa1225280:CDS 15.0%
!! AAAAAATAAATAACAGAAAG+TGG + chr8_1:90623547-90623566 None:intergenic 15.0%
!! AAATATAAGTCATAATCAAA+AGG + chr8_1:90623572-90623591 None:intergenic 15.0%
!!! ATTATTAACATGATTGATTT+TGG + chr8_1:90623896-90623915 None:intergenic 15.0%
!! TTAATAATCAGAATAATATG+TGG - chr8_1:90623908-90623927 Msa1225280:intron 15.0%
!! ATAGGAAAATAATTATAATC+AGG + chr8_1:90624805-90624824 None:intergenic 15.0%
!! TTATGATTTGAATTATGAAT+TGG - chr8_1:90625006-90625025 Msa1225280:CDS 15.0%
!!! TTTTTCAATTAAATTTGACA+TGG + chr8_1:90625114-90625133 None:intergenic 15.0%
!!! AAACAACACATTTTTTTTTT+GGG + chr8_1:90625232-90625251 None:intergenic 15.0%
!!! AAAACAACACATTTTTTTTT+TGG + chr8_1:90625233-90625252 None:intergenic 15.0%
!!! AATTGAAAGTATATTATCTT+TGG - chr8_1:90626354-90626373 Msa1225280:intron 15.0%
!!! AATTACTTTGACTTTTTTTA+AGG + chr8_1:90626779-90626798 None:intergenic 15.0%
!! TGTTTGGATTATAGAATAAA+TGG - chr8_1:90621713-90621732 Msa1225280:CDS 20.0%
!! AGATCAAAATGTTAAGTTTA+TGG + chr8_1:90622057-90622076 None:intergenic 20.0%
!! AAAAGTAACTTCATAATCAT+CGG + chr8_1:90622106-90622125 None:intergenic 20.0%
!!! ATGATTATGAAGTTACTTTT+TGG - chr8_1:90622106-90622125 Msa1225280:intron 20.0%
!! TGTAAAATTGTAAGTTAATC+AGG - chr8_1:90622133-90622152 Msa1225280:intron 20.0%
!! TGATAATTAGTGATAAAATG+TGG + chr8_1:90622682-90622701 None:intergenic 20.0%
!!! CATTTTATCACTAATTATCA+AGG - chr8_1:90622682-90622701 Msa1225280:CDS 20.0%
!! GCAAAAAGGTTAAATAAAAA+AGG + chr8_1:90623050-90623069 None:intergenic 20.0%
!! TGAAGAAAACTAAATATTCT+TGG + chr8_1:90623413-90623432 None:intergenic 20.0%
!! ATTCATGATGAACAAATATT+TGG - chr8_1:90623943-90623962 Msa1225280:intron 20.0%
!!! TAAAAAGGTTTGGTTAATAT+GGG + chr8_1:90624144-90624163 None:intergenic 20.0%
!! CAATTAAAAGTGATCTAAAA+AGG + chr8_1:90624159-90624178 None:intergenic 20.0%
!!! CTTTTTAGATCACTTTTAAT+TGG - chr8_1:90624157-90624176 Msa1225280:intron 20.0%
!!! TGCTTTGTAATCTAAAATAA+AGG - chr8_1:90624717-90624736 Msa1225280:intron 20.0%
!! ACATATTGTGTAGATTAAAA+AGG - chr8_1:90624829-90624848 Msa1225280:CDS 20.0%
!! ATTTGAAGAATATTTAACGT+GGG + chr8_1:90624965-90624984 None:intergenic 20.0%
!! TATTTGAAGAATATTTAACG+TGG + chr8_1:90624966-90624985 None:intergenic 20.0%
!!! TTTTTTTTTTGGGCATAAAT+TGG + chr8_1:90625222-90625241 None:intergenic 20.0%
!! GAAAAAAAAAATTACCTGAT+AGG + chr8_1:90625536-90625555 None:intergenic 20.0%
!! AACTAATGTATTTACCTAAT+TGG + chr8_1:90625790-90625809 None:intergenic 20.0%
!!! TCTTTTCAATTAGATATAGT+TGG - chr8_1:90626115-90626134 Msa1225280:intron 20.0%
!! TATCATATTCATATGTTTCA+TGG + chr8_1:90626211-90626230 None:intergenic 20.0%
!!! TTGTAGTATTTGATCTATTT+TGG - chr8_1:90626263-90626282 Msa1225280:intron 20.0%
!! TGGAATTAATCTTTCTAATA+TGG - chr8_1:90626283-90626302 Msa1225280:intron 20.0%
!! GGAATTAATCTTTCTAATAT+GGG - chr8_1:90626284-90626303 Msa1225280:intron 20.0%
!! GAATTAATCTTTCTAATATG+GGG - chr8_1:90626285-90626304 Msa1225280:intron 20.0%
!! ATTAAAAACCTATATACTGA+AGG + chr8_1:90626670-90626689 None:intergenic 20.0%
!! AAAATTTCAATATTGTGCAA+GGG + chr8_1:90626713-90626732 None:intergenic 20.0%
!! GAATTCACTTATTTACTATA+TGG + chr8_1:90626862-90626881 None:intergenic 20.0%
!!! TATATTTTTTGTGCCAAACA+AGG - chr8_1:90621182-90621201 Msa1225280:three_prime_UTR 25.0%
! ACAATTCAACTTACATTGTA+TGG - chr8_1:90621630-90621649 Msa1225280:intron 25.0%
!! CTATTTAAAGACTTGCTTAT+AGG + chr8_1:90621844-90621863 None:intergenic 25.0%
!!! TTTCTTTGGAATTCAATTGT+TGG - chr8_1:90622000-90622019 Msa1225280:intron 25.0%
!!! TTCTTTGGAATTCAATTGTT+GGG - chr8_1:90622001-90622020 Msa1225280:intron 25.0%
!!! ACTTAACATTTTGATCTATC+AGG - chr8_1:90622060-90622079 Msa1225280:CDS 25.0%
! AATTGTAAGTTAATCAGGTT+AGG - chr8_1:90622138-90622157 Msa1225280:intron 25.0%
!! TGTGTTGTTATAATGAGAAA+CGG + chr8_1:90622333-90622352 None:intergenic 25.0%
! ATATTCAAGCACTAATTTAC+CGG - chr8_1:90622366-90622385 Msa1225280:CDS 25.0%
!!! ATGGATTTTTTTTCTTGAGA+TGG + chr8_1:90622399-90622418 None:intergenic 25.0%
! ATAATCAGAATAATATGTGG+AGG - chr8_1:90623911-90623930 Msa1225280:intron 25.0%
! GAAGATAGAGAAGTAATTAA+GGG + chr8_1:90624011-90624030 None:intergenic 25.0%
! AGAAGATAGAGAAGTAATTA+AGG + chr8_1:90624012-90624031 None:intergenic 25.0%
! CTATATATAGAGAGAAGTTA+TGG + chr8_1:90624087-90624106 None:intergenic 25.0%
!! CTAAAAAGGTTTGGTTAATA+TGG + chr8_1:90624145-90624164 None:intergenic 25.0%
! AAAAGTGATCTAAAAAGGTT+TGG + chr8_1:90624154-90624173 None:intergenic 25.0%
! TTAAAATACAAGTCCAATGT+TGG - chr8_1:90624216-90624235 Msa1225280:intron 25.0%
! CGGTAAAATTAAATTGCTTT+CGG + chr8_1:90624266-90624285 None:intergenic 25.0%
! CAATATAAAAATGCAAGAAG+CGG + chr8_1:90624286-90624305 None:intergenic 25.0%
! AATCATTTCAATCAAGCTTT+CGG - chr8_1:90624328-90624347 Msa1225280:CDS 25.0%
! AGGTAATAATAGAATGAATG+AGG + chr8_1:90624441-90624460 None:intergenic 25.0%
! TCTACACAATATGTTTCAAT+AGG + chr8_1:90624823-90624842 None:intergenic 25.0%
! ATTGTGTAGATTAAAAAGGA+TGG - chr8_1:90624833-90624852 Msa1225280:CDS 25.0%
! TTGAAAATTGTGGATAAAGT+GGG + chr8_1:90624880-90624899 None:intergenic 25.0%
! ATTGAAAATTGTGGATAAAG+TGG + chr8_1:90624881-90624900 None:intergenic 25.0%
!! GATTCATGTGATAACAATTT+TGG - chr8_1:90625259-90625278 Msa1225280:intron 25.0%
!!! ATGATATTTTTTAGTGCACA+TGG - chr8_1:90625391-90625410 Msa1225280:intron 25.0%
!!! TGATATTTTTTAGTGCACAT+GGG - chr8_1:90625392-90625411 Msa1225280:intron 25.0%
! ATAGTTGAACTTGGAAAAAA+AGG - chr8_1:90625742-90625761 Msa1225280:intron 25.0%
! AACAAAACAAAATACTAGTC+AGG + chr8_1:90625862-90625881 None:intergenic 25.0%
! TGATGTTGAATACAAAGAAT+TGG - chr8_1:90625945-90625964 Msa1225280:intron 25.0%
! TAGAATCTGGTATAGAAAAT+TGG - chr8_1:90625971-90625990 Msa1225280:intron 25.0%
! AGAATCTGGTATAGAAAATT+GGG - chr8_1:90625972-90625991 Msa1225280:intron 25.0%
!!! TTGTTTTAGTCTCAAAAGAT+CGG - chr8_1:90626175-90626194 Msa1225280:intron 25.0%
! ACAAGACTAAAACTAAAACA+AGG + chr8_1:90626247-90626266 None:intergenic 25.0%
! AACATGTTTGTTTAAATCTC+TGG - chr8_1:90626308-90626327 Msa1225280:intron 25.0%
!! TGATAGTATTTTTCACCAAT+GGG - chr8_1:90626559-90626578 Msa1225280:CDS 25.0%
!!! ATTTTGATCCTTCAGTATAT+AGG - chr8_1:90626659-90626678 Msa1225280:intron 25.0%
! CAAAATTTCAATATTGTGCA+AGG + chr8_1:90626714-90626733 None:intergenic 25.0%
!! TGCACAATATTGAAATTTTG+AGG - chr8_1:90626714-90626733 Msa1225280:intron 25.0%
!! GCACAATATTGAAATTTTGA+GGG - chr8_1:90626715-90626734 Msa1225280:intron 25.0%
!! CACAATATTGAAATTTTGAG+GGG - chr8_1:90626716-90626735 Msa1225280:intron 25.0%
CTACTGTACTACAATTAGTA+TGG + chr8_1:90621065-90621084 None:intergenic 30.0%
ATCACCTTAAAATTCACTTC+TGG - chr8_1:90621116-90621135 Msa1225280:three_prime_UTR 30.0%
TCACCTTAAAATTCACTTCT+GGG - chr8_1:90621117-90621136 Msa1225280:three_prime_UTR 30.0%
CATTGTAAATGGAAGACTTA+CGG + chr8_1:90621324-90621343 None:intergenic 30.0%
TGAGAAAACAGCTTATAACA+TGG + chr8_1:90621475-90621494 None:intergenic 30.0%
!!! TTTCTCACTAGTTTTTAGCT+TGG - chr8_1:90621488-90621507 Msa1225280:intron 30.0%
AAAAGATTAAGGACCAAGTT+TGG + chr8_1:90621539-90621558 None:intergenic 30.0%
! AACTTGGTCCTTAATCTTTT+TGG - chr8_1:90621539-90621558 Msa1225280:intron 30.0%
GTTGGATTCCAAAAAGATTA+AGG + chr8_1:90621550-90621569 None:intergenic 30.0%
! TTGTATGGTAAGTTTTCCTT+CGG - chr8_1:90621645-90621664 Msa1225280:intron 30.0%
!! ACAAAGAGTACTTGATTCTA+AGG + chr8_1:90621677-90621696 None:intergenic 30.0%
!! TAGTTGGTTAGTTTGTTATG+TGG - chr8_1:90621777-90621796 Msa1225280:CDS 30.0%
! TAAAGTGCTCTTTCTTTCTT+TGG - chr8_1:90621986-90622005 Msa1225280:intron 30.0%
TTAGGATACAATACTGAGTA+TGG - chr8_1:90622156-90622175 Msa1225280:intron 30.0%
CTAAATGTGTGAAAAGAAAC+CGG + chr8_1:90622256-90622275 None:intergenic 30.0%
TTCGTATGTTTAGAGAAAAG+GGG + chr8_1:90622474-90622493 None:intergenic 30.0%
CTTCGTATGTTTAGAGAAAA+GGG + chr8_1:90622475-90622494 None:intergenic 30.0%
!! AAAAAGCACATGTTTTCAGT+GGG - chr8_1:90622909-90622928 Msa1225280:CDS 30.0%
CTTACATCTGATGATAAGAT+TGG - chr8_1:90622975-90622994 Msa1225280:intron 30.0%
! TGTAAAAGCTAGAGTATTAC+CGG + chr8_1:90623077-90623096 None:intergenic 30.0%
TTTACAGTGTTGTCAAATAG+TGG - chr8_1:90623120-90623139 Msa1225280:intron 30.0%
ACAGCAAAAATGACAATCTT+AGG + chr8_1:90623340-90623359 None:intergenic 30.0%
! TATTTTATGTCCAATCTCAC+AGG - chr8_1:90623373-90623392 Msa1225280:intron 30.0%
! TAGTTTTCTTCAAAAGCCAT+TGG - chr8_1:90623421-90623440 Msa1225280:intron 30.0%
TGAACTAATCATGTTTGAGT+AGG - chr8_1:90623637-90623656 Msa1225280:intron 30.0%
GAAAGAATAGCACAATGATA+TGG - chr8_1:90623755-90623774 Msa1225280:intron 30.0%
TGTTGAGGAGAAATATTTGT+TGG - chr8_1:90623868-90623887 Msa1225280:intron 30.0%
CATGATGAACAAATATTTGG+TGG - chr8_1:90623946-90623965 Msa1225280:intron 30.0%
! TGAACAAATATTTGGTGGTT+TGG - chr8_1:90623951-90623970 Msa1225280:intron 30.0%
TCTCTATCTTCTTCTGATAT+AGG - chr8_1:90624020-90624039 Msa1225280:intron 30.0%
ATAAGTATCTAATAGGGTGT+GGG + chr8_1:90624118-90624137 None:intergenic 30.0%
TATAAGTATCTAATAGGGTG+TGG + chr8_1:90624119-90624138 None:intergenic 30.0%
GGGCTTATAAGTATCTAATA+GGG + chr8_1:90624124-90624143 None:intergenic 30.0%
TGGGCTTATAAGTATCTAAT+AGG + chr8_1:90624125-90624144 None:intergenic 30.0%
TAATTGGACTTCAACTTAAG+TGG - chr8_1:90624173-90624192 Msa1225280:intron 30.0%
TGAAATGATTGGAAAGAGTA+AGG + chr8_1:90624318-90624337 None:intergenic 30.0%
GAAAGCTTGATTGAAATGAT+TGG + chr8_1:90624329-90624348 None:intergenic 30.0%
AGTCAATAGTAGAATCTCAT+CGG + chr8_1:90624368-90624387 None:intergenic 30.0%
AGACTTGAAGAAATCTCTTT+CGG - chr8_1:90624495-90624514 Msa1225280:intron 30.0%
! CTGGTTGATATTGAAAATTG+TGG + chr8_1:90624890-90624909 None:intergenic 30.0%
! CAATTTTCAATATCAACCAG+TGG - chr8_1:90624890-90624909 Msa1225280:CDS 30.0%
TGGGTAATAAAAGTAATCAC+CGG + chr8_1:90624946-90624965 None:intergenic 30.0%
! AAAAGTACACTACCTCTTTA+GGG + chr8_1:90625157-90625176 None:intergenic 30.0%
! AAAAAGTACACTACCTCTTT+AGG + chr8_1:90625158-90625177 None:intergenic 30.0%
! TATTCCTGTTTCTCTTTGTT+TGG - chr8_1:90625283-90625302 Msa1225280:intron 30.0%
! ATTCCTGTTTCTCTTTGTTT+GGG - chr8_1:90625284-90625303 Msa1225280:intron 30.0%
! TAATTCCAAGTAATTTGTGC+AGG - chr8_1:90625366-90625385 Msa1225280:intron 30.0%
!!! GATATTTTTTAGTGCACATG+GGG - chr8_1:90625393-90625412 Msa1225280:intron 30.0%
AAAAATTACCTGATAGGCAA+GGG + chr8_1:90625530-90625549 None:intergenic 30.0%
AAAAAATTACCTGATAGGCA+AGG + chr8_1:90625531-90625550 None:intergenic 30.0%
! AACAGTTCATGAAGTTTTCT+TGG - chr8_1:90625633-90625652 Msa1225280:intron 30.0%
ACTATTGTCTCATCTGTATA+GGG + chr8_1:90625727-90625746 None:intergenic 30.0%
AACTATTGTCTCATCTGTAT+AGG + chr8_1:90625728-90625747 None:intergenic 30.0%
! AAAAGGAGTGAAAAGTATGT+TGG - chr8_1:90625759-90625778 Msa1225280:intron 30.0%
!!! TTTTGTTTTGTTAACTCGTG+CGG - chr8_1:90625870-90625889 Msa1225280:intron 30.0%
GAATCTGGTATAGAAAATTG+GGG - chr8_1:90625973-90625992 Msa1225280:intron 30.0%
!! TTGTTTAAATCTCTGGAATC+TGG - chr8_1:90626315-90626334 Msa1225280:intron 30.0%
ATATTATCTTTGGCAGTCTT+TGG - chr8_1:90626364-90626383 Msa1225280:intron 30.0%
CATTGGTGAAAAATACTATC+AGG + chr8_1:90626560-90626579 None:intergenic 30.0%
! CTGATAGTATTTTTCACCAA+TGG - chr8_1:90626558-90626577 Msa1225280:CDS 30.0%
! GATAGTATTTTTCACCAATG+GGG - chr8_1:90626560-90626579 Msa1225280:CDS 30.0%
ATGACATAATCATGATGTGA+TGG - chr8_1:90626817-90626836 Msa1225280:five_prime_UTR 30.0%
CTGTACTACAATTAGTATGG+AGG + chr8_1:90621062-90621081 None:intergenic 35.0%
AGTACAGTAGTAGTAGTAGT+TGG - chr8_1:90621075-90621094 Msa1225280:three_prime_UTR 35.0%
GTACAGTAGTAGTAGTAGTT+GGG - chr8_1:90621076-90621095 Msa1225280:three_prime_UTR 35.0%
! GAACCCAGAAGTGAATTTTA+AGG + chr8_1:90621123-90621142 None:intergenic 35.0%
CATGAGAGTCACATTGTAAA+TGG + chr8_1:90621335-90621354 None:intergenic 35.0%
TACATACATACATACTCTCC+AGG + chr8_1:90621449-90621468 None:intergenic 35.0%
! GGAGAGTATGTATGTATGTA+TGG - chr8_1:90621449-90621468 Msa1225280:intron 35.0%
!!! TCACTAGTTTTTAGCTTGGT+TGG - chr8_1:90621492-90621511 Msa1225280:intron 35.0%
CAACTAAGCTAATCCAAACT+TGG - chr8_1:90621523-90621542 Msa1225280:intron 35.0%
AGGGAAGAAATAGAACATGT+TGG + chr8_1:90621568-90621587 None:intergenic 35.0%
! TGTTCTATTTCTTCCCTAGA+AGG - chr8_1:90621571-90621590 Msa1225280:intron 35.0%
! GTTCTATTTCTTCCCTAGAA+GGG - chr8_1:90621572-90621591 Msa1225280:intron 35.0%
CATGTTATGAATCCCTTCTA+GGG + chr8_1:90621587-90621606 None:intergenic 35.0%
TCTATGTCAAGTCTACTGTT+TGG - chr8_1:90621697-90621716 Msa1225280:intron 35.0%
TTATGGTCACAATACAACAC+AGG + chr8_1:90622040-90622059 None:intergenic 35.0%
TAATCATCGGTAGTTGTTAC+TGG + chr8_1:90622093-90622112 None:intergenic 35.0%
CATTGGATCTTTATAGAGCA+CGG + chr8_1:90622196-90622215 None:intergenic 35.0%
CTCGAAAAGAAGCTATACAT+TGG + chr8_1:90622213-90622232 None:intergenic 35.0%
! CAATGTATAGCTTCTTTTCG+AGG - chr8_1:90622211-90622230 Msa1225280:intron 35.0%
TTACACAATCAGCAATGGAT+AGG - chr8_1:90622301-90622320 Msa1225280:CDS 35.0%
! TTCTTGAGATGGATTTGAAC+CGG + chr8_1:90622388-90622407 None:intergenic 35.0%
GCTTCGTATGTTTAGAGAAA+AGG + chr8_1:90622476-90622495 None:intergenic 35.0%
TGTGGCATAAAAAATGCATG+AGG + chr8_1:90622664-90622683 None:intergenic 35.0%
! GCTGCTATGTAATTTTTCAC+AGG + chr8_1:90622834-90622853 None:intergenic 35.0%
!!! ACATGTGCTTTTTGAGTGAT+TGG + chr8_1:90622902-90622921 None:intergenic 35.0%
!! CAAAAAGCACATGTTTTCAG+TGG - chr8_1:90622908-90622927 Msa1225280:CDS 35.0%
! ATTTAACCTTTTTGCAGACC+CGG - chr8_1:90623055-90623074 Msa1225280:intron 35.0%
! GTAAAAGCTAGAGTATTACC+GGG + chr8_1:90623076-90623095 None:intergenic 35.0%
ACAATGCTATAGCTGCTATT+TGG + chr8_1:90623224-90623243 None:intergenic 35.0%
! TTTTATCCCGCTATTCCTTT+AGG - chr8_1:90623304-90623323 Msa1225280:CDS 35.0%
CGTATAATATCCTGTGAGAT+TGG + chr8_1:90623386-90623405 None:intergenic 35.0%
CCTTAGAACAGATACAAACT+GGG + chr8_1:90623447-90623466 None:intergenic 35.0%
CCAGTTTGTATCTGTTCTAA+GGG - chr8_1:90623445-90623464 Msa1225280:intron 35.0%
AGAATAGCACAATGATATGG+CGG - chr8_1:90623758-90623777 Msa1225280:intron 35.0%
CAACAGTTACTGCATAAAAG+TGG + chr8_1:90623853-90623872 None:intergenic 35.0%
! CTTTTATGCAGTAACTGTTG+AGG - chr8_1:90623853-90623872 Msa1225280:intron 35.0%
TCTCTCTATATATAGAACCC+TGG - chr8_1:90624092-90624111 Msa1225280:intron 35.0%
TTGGATCATCAATCCAACAT+TGG + chr8_1:90624232-90624251 None:intergenic 35.0%
GCTTTCGGAGTAAATATTGT+TGG + chr8_1:90624251-90624270 None:intergenic 35.0%
TTGATAAAGATTATGCCACC+AGG - chr8_1:90624642-90624661 Msa1225280:intron 35.0%
TGATAAAGATTATGCCACCA+GGG - chr8_1:90624643-90624662 Msa1225280:intron 35.0%
TCAACGTGAAGGATACATAA+AGG - chr8_1:90625088-90625107 Msa1225280:intron 35.0%
GAAGTCGTTGAAACTACATA+AGG + chr8_1:90625182-90625201 None:intergenic 35.0%
ATGTAGTTTCAACGACTTCA+TGG - chr8_1:90625183-90625202 Msa1225280:intron 35.0%
AATCCCAAACAAAGAGAAAC+AGG + chr8_1:90625290-90625309 None:intergenic 35.0%
! TGAGTTGCATTTTTCATTGC+TGG - chr8_1:90625331-90625350 Msa1225280:intron 35.0%
TTCTTCTTACAGAGTAGAGT+TGG - chr8_1:90625682-90625701 Msa1225280:intron 35.0%
GATGAGACAATAGTTGAACT+TGG - chr8_1:90625733-90625752 Msa1225280:intron 35.0%
CTAGTCAGGTCTAAGAAAAA+GGG + chr8_1:90625848-90625867 None:intergenic 35.0%
ACTAGTCAGGTCTAAGAAAA+AGG + chr8_1:90625849-90625868 None:intergenic 35.0%
!! AAAGAATTGGCTCTAGAATC+TGG - chr8_1:90625958-90625977 Msa1225280:intron 35.0%
ATCTGCCAAATCAGAAATGA+AGG + chr8_1:90626028-90626047 None:intergenic 35.0%
AGCATATGACTCGCAAAATA+GGG - chr8_1:90626418-90626437 Msa1225280:intron 35.0%
!! TGACAAAAAGTGCTGAAACT+TGG - chr8_1:90626477-90626496 Msa1225280:intron 35.0%
!! AAAAGTGCTGAAACTTGGAA+TGG - chr8_1:90626482-90626501 Msa1225280:intron 35.0%
AGATTCATTCACCTAAGAGA+GGG + chr8_1:90626596-90626615 None:intergenic 35.0%
!! TTTTGAGGGGTTGTATTAAG+TGG - chr8_1:90626729-90626748 Msa1225280:five_prime_UTR 35.0%
CACATCATGATTATGTCATC+TGG + chr8_1:90626816-90626835 None:intergenic 35.0%
!! CTTTGGTTGGTTGGTTTACA+AGG + chr8_1:90620947-90620966 None:intergenic 40.0%
CTTGTAAACCAACCAACCAA+AGG - chr8_1:90620945-90620964 Msa1225280:three_prime_UTR 40.0%
!! TTTGCTTTTCGACCTTTGGT+TGG + chr8_1:90620960-90620979 None:intergenic 40.0%
AACCAAAGGTCGAAAAGCAA+AGG - chr8_1:90620959-90620978 Msa1225280:three_prime_UTR 40.0%
!! TTCCTTTGCTTTTCGACCTT+TGG + chr8_1:90620964-90620983 None:intergenic 40.0%
!! AAACTTGTTGAGGCCTTGTT+TGG + chr8_1:90621198-90621217 None:intergenic 40.0%
!! CATAGCTGGAAAACTTGTTG+AGG + chr8_1:90621208-90621227 None:intergenic 40.0%
! AGAAGTAGAAGGTGATAACG+TGG + chr8_1:90621253-90621272 None:intergenic 40.0%
!! AGAAGCGTTGTTGAGTGTAT+AGG + chr8_1:90621283-90621302 None:intergenic 40.0%
TGTAAATGGAAGACTTACGG+AGG + chr8_1:90621321-90621340 None:intergenic 40.0%
CCATGTTATGAATCCCTTCT+AGG + chr8_1:90621588-90621607 None:intergenic 40.0%
CCTAGAAGGGATTCATAACA+TGG - chr8_1:90621585-90621604 Msa1225280:intron 40.0%
! GATTCTAAGGACATTTCCGA+AGG + chr8_1:90621664-90621683 None:intergenic 40.0%
ATAGCGCCTTCATTTGATAG+AGG - chr8_1:90621860-90621879 Msa1225280:CDS 40.0%
TAGCGCCTTCATTTGATAGA+GGG - chr8_1:90621861-90621880 Msa1225280:CDS 40.0%
TACTCCCCTCTATCAAATGA+AGG + chr8_1:90621869-90621888 None:intergenic 40.0%
ACTAGACAATCTCTCTTCCA+AGG + chr8_1:90621946-90621965 None:intergenic 40.0%
ATACAACACAGGTAGAGGTT+AGG + chr8_1:90622029-90622048 None:intergenic 40.0%
TCACAATACAACACAGGTAG+AGG + chr8_1:90622034-90622053 None:intergenic 40.0%
TCGGTAGTTGTTACTGGTAA+TGG + chr8_1:90622087-90622106 None:intergenic 40.0%
CTCTGTTACACAATCAGCAA+TGG - chr8_1:90622296-90622315 Msa1225280:CDS 40.0%
AGATCGCAGTGAAGAAAAAC+TGG + chr8_1:90622856-90622875 None:intergenic 40.0%
! AGTGATTGGTTGGAAACCAA+GGG + chr8_1:90622888-90622907 None:intergenic 40.0%
!!! GTGCTTTTTGAGTGATTGGT+TGG + chr8_1:90622898-90622917 None:intergenic 40.0%
TTTAGTAGCTCGAACAGATC+AGG - chr8_1:90622935-90622954 Msa1225280:CDS 40.0%
! GGAGTGTTATTGCTAAACCT+TGG - chr8_1:90622996-90623015 Msa1225280:intron 40.0%
! GTGTTATTGCTAAACCTTGG+AGG - chr8_1:90622999-90623018 Msa1225280:intron 40.0%
ATCACGACCTAAAGGAATAG+CGG + chr8_1:90623314-90623333 None:intergenic 40.0%
TTAGGTTCATCACGACCTAA+AGG + chr8_1:90623322-90623341 None:intergenic 40.0%
CCCAGTTTGTATCTGTTCTA+AGG - chr8_1:90623444-90623463 Msa1225280:intron 40.0%
CCCTTAGAACAGATACAAAC+TGG + chr8_1:90623448-90623467 None:intergenic 40.0%
GCATCAGTTATACGTCTAAG+AGG + chr8_1:90623515-90623534 None:intergenic 40.0%
TAGACGTATAACTGATGCAC+AGG - chr8_1:90623517-90623536 Msa1225280:intron 40.0%
GACTACAGAATAACAAAGCC+TGG + chr8_1:90623670-90623689 None:intergenic 40.0%
!! GTGGTTCTAACTACTATTGC+TGG + chr8_1:90623834-90623853 None:intergenic 40.0%
! AGAATGTGTGTTGATCTGGA+AGG + chr8_1:90623977-90623996 None:intergenic 40.0%
! AGAGAGAATGTGTGTTGATC+TGG + chr8_1:90623981-90624000 None:intergenic 40.0%
GATTGGAAAGAGTAAGGATG+AGG + chr8_1:90624312-90624331 None:intergenic 40.0%
GGAGATCATTAGAAGAGCAA+AGG + chr8_1:90624461-90624480 None:intergenic 40.0%
TCAATAGCTTCCTCAGTGAA+TGG + chr8_1:90624568-90624587 None:intergenic 40.0%
CAGGTTTCAACAATGTGATC+AGG + chr8_1:90624786-90624805 None:intergenic 40.0%
AAAGGATGGAGTTACAAAGC+TGG - chr8_1:90624847-90624866 Msa1225280:CDS 40.0%
! GTCTACTGGAGAGTATATTC+CGG - chr8_1:90624924-90624943 Msa1225280:CDS 40.0%
TATGAATTGGTCCTTCAGAG+AGG - chr8_1:90625019-90625038 Msa1225280:CDS 40.0%
TAGATACTCATCCTCTCTGA+AGG + chr8_1:90625033-90625052 None:intergenic 40.0%
AGCACACAGTATTACCTTCA+TGG - chr8_1:90625063-90625082 Msa1225280:intron 40.0%
CATGACCTGCACAAATTACT+TGG + chr8_1:90625374-90625393 None:intergenic 40.0%
GGAATGTGTGGATTTGATCA+TGG - chr8_1:90625468-90625487 Msa1225280:intron 40.0%
!! TAGGGTTTTAACCATTCCAC+AGG + chr8_1:90625709-90625728 None:intergenic 40.0%
! GTATGTTGGCTGTTCCAATT+AGG - chr8_1:90625773-90625792 Msa1225280:intron 40.0%
ACCCTCCTTCATTTCTGATT+TGG - chr8_1:90626020-90626039 Msa1225280:intron 40.0%
GCCAAATCAGAAATGAAGGA+GGG + chr8_1:90626024-90626043 None:intergenic 40.0%
TGCCAAATCAGAAATGAAGG+AGG + chr8_1:90626025-90626044 None:intergenic 40.0%
ATTGAAAGTCTCCCATATGC+TGG - chr8_1:90626054-90626073 Msa1225280:intron 40.0%
! CGGAAGTGTACAAGAGTTAT+TGG - chr8_1:90626394-90626413 Msa1225280:intron 40.0%
CAGCATATGACTCGCAAAAT+AGG - chr8_1:90626417-90626436 Msa1225280:intron 40.0%
GAATATTATCGCCCTCTCTT+AGG - chr8_1:90626582-90626601 Msa1225280:exon 40.0%
GAGATTCATTCACCTAAGAG+AGG + chr8_1:90626597-90626616 None:intergenic 40.0%
!! TGGTTGGTTGGTTTACAAGG+AGG + chr8_1:90620944-90620963 None:intergenic 45.0%
! CTTTTCGACCTTTGGTTGGT+TGG + chr8_1:90620956-90620975 None:intergenic 45.0%
! GGAGTTTGAAGCTTCATAGC+TGG + chr8_1:90621222-90621241 None:intergenic 45.0%
GTTGTTGAGTGTATAGGAGG+CGG + chr8_1:90621277-90621296 None:intergenic 45.0%
AGCGTTGTTGAGTGTATAGG+AGG + chr8_1:90621280-90621299 None:intergenic 45.0%
TACGGAGGACGCTTGAAATT+AGG + chr8_1:90621306-90621325 None:intergenic 45.0%
AGCGCCTTCATTTGATAGAG+GGG - chr8_1:90621862-90621881 Msa1225280:CDS 45.0%
AGTAACAACTCTGTTGCCGA+GGG - chr8_1:90621915-90621934 Msa1225280:intron 45.0%
AGTCTAGCAGGATCTTGAGA+TGG + chr8_1:90622418-90622437 None:intergenic 45.0%
! AGACAGAAAGTTGATCGCCT+AGG + chr8_1:90622551-90622570 None:intergenic 45.0%
!! GCAGAAGGACTTTTTCTGAG+AGG + chr8_1:90622775-90622794 None:intergenic 45.0%
CAGAAAAAGTCCTTCTGCTC+TGG - chr8_1:90622777-90622796 Msa1225280:intron 45.0%
! GAGTGATTGGTTGGAAACCA+AGG + chr8_1:90622889-90622908 None:intergenic 45.0%
!! TGCACATCTTCTAGAGTCTC+TGG + chr8_1:90623026-90623045 None:intergenic 45.0%
GTATTACCGGGTCTGCAAAA+AGG + chr8_1:90623064-90623083 None:intergenic 45.0%
TCACGACCTAAAGGAATAGC+GGG + chr8_1:90623313-90623332 None:intergenic 45.0%
ACAGATACAAACTGGGCCAA+TGG + chr8_1:90623440-90623459 None:intergenic 45.0%
AGAGAAGGCTACGCTTCAAT+TGG - chr8_1:90623479-90623498 Msa1225280:intron 45.0%
GTTTGAGTAGGAGTTGTTCC+AGG - chr8_1:90623649-90623668 Msa1225280:intron 45.0%
TCTAATGATCTCCTCTGCAC+AGG - chr8_1:90624468-90624487 Msa1225280:intron 45.0%
TTACTGGCATCCATTCACTG+AGG - chr8_1:90624555-90624574 Msa1225280:intron 45.0%
CACTGAGGAAGCTATTGAAC+AGG - chr8_1:90624570-90624589 Msa1225280:intron 45.0%
ATTGTAGAGCGATAGCAGGT+AGG + chr8_1:90624674-90624693 None:intergenic 45.0%
TCGTATTGTAGAGCGATAGC+AGG + chr8_1:90624678-90624697 None:intergenic 45.0%
CCTTCACGTTGATACCATGA+AGG + chr8_1:90625080-90625099 None:intergenic 45.0%
CCTTCATGGTATCAACGTGA+AGG - chr8_1:90625077-90625096 Msa1225280:intron 45.0%
!!! GAGTTTTGACTGCCCTAAAG+AGG - chr8_1:90625142-90625161 Msa1225280:intron 45.0%
TGATCCTTACAAGGCAGAGA+TGG - chr8_1:90625444-90625463 Msa1225280:intron 45.0%
AACTCTTGTACACTTCCGAG+CGG + chr8_1:90626392-90626411 None:intergenic 45.0%
AGGGCGATAATATTCCCCAT+TGG + chr8_1:90626577-90626596 None:intergenic 45.0%
AACCATGCTCTCAAAGACAG+TGG - chr8_1:90626617-90626636 Msa1225280:intron 45.0%
TGTGCAAGGGAATGACTTGA+TGG + chr8_1:90626700-90626719 None:intergenic 45.0%
! GGTGATAACGTGGCATGAGT+TGG + chr8_1:90621243-90621262 None:intergenic 50.0%
TAGGAGGCGGAAGAAGTAGA+AGG + chr8_1:90621264-90621283 None:intergenic 50.0%
GAGTAACAACTCTGTTGCCG+AGG - chr8_1:90621914-90621933 Msa1225280:intron 50.0%
GTAACAACTCTGTTGCCGAG+GGG - chr8_1:90621916-90621935 Msa1225280:intron 50.0%
CTCTTCCAAGGATTTCCCCT+CGG + chr8_1:90621934-90621953 None:intergenic 50.0%
!! GTTTTGACGAGCAGTCTAGC+AGG + chr8_1:90622430-90622449 None:intergenic 50.0%
TTGATCGCCTAGGATGACAG+CGG + chr8_1:90622541-90622560 None:intergenic 50.0%
! TGAGAGGTACAGATTGCCTG+TGG + chr8_1:90622759-90622778 None:intergenic 50.0%
! GCGATCTGAAGCAAAACCCT+TGG - chr8_1:90622869-90622888 Msa1225280:intron 50.0%
GTAGCCTTCTCTGCTCTTTG+GGG + chr8_1:90623471-90623490 None:intergenic 50.0%
CGTAGCCTTCTCTGCTCTTT+GGG + chr8_1:90623472-90623491 None:intergenic 50.0%
GAAGGCTACGCTTCAATTGG+TGG - chr8_1:90623482-90623501 Msa1225280:intron 50.0%
ATCTAATAGGGTGTGGGCCA+GGG + chr8_1:90624112-90624131 None:intergenic 50.0%
TATCTAATAGGGTGTGGGCC+AGG + chr8_1:90624113-90624132 None:intergenic 50.0%
TGCCAACGTACACTTCAGCA+GGG + chr8_1:90624531-90624550 None:intergenic 50.0%
ATGCCAACGTACACTTCAGC+AGG + chr8_1:90624532-90624551 None:intergenic 50.0%
TGTACGTTGGCATGCGTTAC+TGG - chr8_1:90624539-90624558 Msa1225280:intron 50.0%
ATAGCAGGTAGGAGAATCCC+TGG + chr8_1:90624663-90624682 None:intergenic 50.0%
TAGACGTAAGCTTGAGCCAC+TGG + chr8_1:90624909-90624928 None:intergenic 50.0%
TGGCTCAAGCTTACGTCTAC+TGG - chr8_1:90624910-90624929 Msa1225280:CDS 50.0%
GCCTCTTGCTTATGTGGAAG+AGG - chr8_1:90625417-90625436 Msa1225280:intron 50.0%
GCCTCTTCCACATAAGCAAG+AGG + chr8_1:90625421-90625440 None:intergenic 50.0%
CTTGCTTATGTGGAAGAGGC+CGG - chr8_1:90625421-90625440 Msa1225280:intron 50.0%
CTCTGCCTTGTAAGGATCAC+CGG + chr8_1:90625443-90625462 None:intergenic 50.0%
TCCTTACAAGGCAGAGATGG+AGG - chr8_1:90625447-90625466 Msa1225280:intron 50.0%
TCCTCCATCTCTGCCTTGTA+AGG + chr8_1:90625451-90625470 None:intergenic 50.0%
ACCTGATAGGCAAGGGTGAA+GGG + chr8_1:90625523-90625542 None:intergenic 50.0%
TACCTGATAGGCAAGGGTGA+AGG + chr8_1:90625524-90625543 None:intergenic 50.0%
ACAGAGTAGAGTTGGACCTG+TGG - chr8_1:90625690-90625709 Msa1225280:intron 50.0%
GTAGAGTTGGACCTGTGGAA+TGG - chr8_1:90625695-90625714 Msa1225280:intron 50.0%
CACATCCTAGAGCAGGAACA+CGG + chr8_1:90625999-90626018 None:intergenic 50.0%
TTCGAGGCTTGAAACTGCCA+TGG + chr8_1:90626082-90626101 None:intergenic 50.0%
AGAATACCTGTCGAGCTTCG+AGG + chr8_1:90626098-90626117 None:intergenic 50.0%
AAATAGGGAGTTGCCATCGC+CGG - chr8_1:90626433-90626452 Msa1225280:intron 50.0%
! CTCCACTGTCTTTGAGAGCA+TGG + chr8_1:90626622-90626641 None:intergenic 50.0%
TGTTGCCGAGGGGAAATCCT+TGG - chr8_1:90621926-90621945 Msa1225280:intron 55.0%
CTCCTTACCGCTGTCATCCT+AGG - chr8_1:90622531-90622550 Msa1225280:intron 55.0%
CACATGAGCTCCAGAGCAGA+AGG + chr8_1:90622790-90622809 None:intergenic 55.0%
!! CTTCTGCTCTGGAGCTCATG+TGG - chr8_1:90622788-90622807 Msa1225280:intron 55.0%
CTAGAGTCTCTGGACCTCCA+AGG + chr8_1:90623016-90623035 None:intergenic 55.0%
GCGTAGCCTTCTCTGCTCTT+TGG + chr8_1:90623473-90623492 None:intergenic 55.0%
GGCTACGCTTCAATTGGTGG+TGG - chr8_1:90623485-90623504 Msa1225280:intron 55.0%
CAAGTCTTCAGCCTGTGCAG+AGG + chr8_1:90624482-90624501 None:intergenic 55.0%
GTCCCTGCTGAAGTGTACGT+TGG - chr8_1:90624526-90624545 Msa1225280:intron 55.0%
! TGGGGTGCCTCTTGCTTATG+TGG - chr8_1:90625411-90625430 Msa1225280:intron 55.0%
AGAGGCCGGTGATCCTTACA+AGG - chr8_1:90625435-90625454 Msa1225280:intron 55.0%
GGCAGAGATGGAGGAATGTG+TGG - chr8_1:90625456-90625475 Msa1225280:intron 55.0%
TCCCTTCACCCTTGCCTATC+AGG - chr8_1:90625519-90625538 Msa1225280:intron 55.0%
GAGGGTTCACATCCTAGAGC+AGG + chr8_1:90626006-90626025 None:intergenic 55.0%
! TCTCCCATATGCTGGTGCCA+TGG - chr8_1:90626062-90626081 Msa1225280:intron 55.0%
CTGCCATGGCACCAGCATAT+GGG + chr8_1:90626068-90626087 None:intergenic 55.0%
ACTGCCATGGCACCAGCATA+TGG + chr8_1:90626069-90626088 None:intergenic 55.0%
TTCAAGCCTCGAAGCTCGAC+AGG - chr8_1:90626089-90626108 Msa1225280:intron 55.0%
! TGGCAGTCTTTGGTTCCGCT+CGG - chr8_1:90626374-90626393 Msa1225280:intron 55.0%
! GCCGGTGATAGTGTGGGAAT+GGG - chr8_1:90626451-90626470 Msa1225280:intron 55.0%
CCCCATTCCCACACTATCAC+CGG + chr8_1:90626455-90626474 None:intergenic 55.0%
! CCGGTGATAGTGTGGGAATG+GGG - chr8_1:90626452-90626471 Msa1225280:intron 55.0%
CGCCTAGGATGACAGCGGTA+AGG + chr8_1:90622536-90622555 None:intergenic 60.0%
! CTTTTGCAGGCTGTCGCCAC+AGG - chr8_1:90622740-90622759 Msa1225280:CDS 60.0%
!! CTGCTCTGGAGCTCATGTGG+AGG - chr8_1:90622791-90622810 Msa1225280:intron 60.0%
AGGGCCCCAAAGAGCAGAGA+AGG - chr8_1:90623464-90623483 Msa1225280:intron 60.0%
AGCTGCAAGCACGCGTGATC+TGG - chr8_1:90624058-90624077 Msa1225280:intron 60.0%
GCAGGTAGGAGAATCCCTGG+TGG + chr8_1:90624660-90624679 None:intergenic 60.0%
! TGCCATCGCCGGTGATAGTG+TGG - chr8_1:90626444-90626463 Msa1225280:intron 60.0%
! GCCATCGCCGGTGATAGTGT+GGG - chr8_1:90626445-90626464 Msa1225280:intron 60.0%
TCCCACACTATCACCGGCGA+TGG + chr8_1:90626449-90626468 None:intergenic 60.0%
! CGCCGGTGATAGTGTGGGAA+TGG - chr8_1:90626450-90626469 Msa1225280:intron 60.0%
TGGGGCCGTGTTCCTGCTCT+AGG - chr8_1:90625991-90626010 Msa1225280:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 90620933 90626882 90620933 ID=Msa1225280;Name=Msa1225280
chr8_1 mRNA 90620933 90626882 90620933 ID=Msa1225280-mRNA-1;Parent=Msa1225280;Name=Msa1225280-mRNA-1;_AED=0.19;_eAED=0.19;_QI=186|1|1|1|0.9|0.81|11|275|528
chr8_1 exon 90620933 90621435 90620933 ID=Msa1225280-mRNA-1:exon:33048;Parent=Msa1225280-mRNA-1
chr8_1 exon 90621705 90621906 90621705 ID=Msa1225280-mRNA-1:exon:33047;Parent=Msa1225280-mRNA-1
chr8_1 exon 90622021 90622121 90622021 ID=Msa1225280-mRNA-1:exon:33046;Parent=Msa1225280-mRNA-1
chr8_1 exon 90622275 90622427 90622275 ID=Msa1225280-mRNA-1:exon:33045;Parent=Msa1225280-mRNA-1
chr8_1 exon 90622652 90622778 90622652 ID=Msa1225280-mRNA-1:exon:33044;Parent=Msa1225280-mRNA-1
chr8_1 exon 90622870 90622973 90622870 ID=Msa1225280-mRNA-1:exon:33043;Parent=Msa1225280-mRNA-1
chr8_1 exon 90623224 90623325 90623224 ID=Msa1225280-mRNA-1:exon:33042;Parent=Msa1225280-mRNA-1
chr8_1 exon 90624277 90624420 90624277 ID=Msa1225280-mRNA-1:exon:33041;Parent=Msa1225280-mRNA-1
chr8_1 exon 90624739 90625066 90624739 ID=Msa1225280-mRNA-1:exon:33040;Parent=Msa1225280-mRNA-1
chr8_1 exon 90626493 90626611 90626493 ID=Msa1225280-mRNA-1:exon:33039;Parent=Msa1225280-mRNA-1
chr8_1 exon 90626718 90626882 90626718 ID=Msa1225280-mRNA-1:exon:33038;Parent=Msa1225280-mRNA-1
chr8_1 five_prime_UTR 90626718 90626882 90626718 ID=Msa1225280-mRNA-1:five_prime_utr;Parent=Msa1225280-mRNA-1
chr8_1 five_prime_UTR 90626591 90626611 90626591 ID=Msa1225280-mRNA-1:five_prime_utr;Parent=Msa1225280-mRNA-1
chr8_1 CDS 90626493 90626590 90626493 ID=Msa1225280-mRNA-1:cds;Parent=Msa1225280-mRNA-1
chr8_1 CDS 90624739 90625066 90624739 ID=Msa1225280-mRNA-1:cds;Parent=Msa1225280-mRNA-1
chr8_1 CDS 90624277 90624420 90624277 ID=Msa1225280-mRNA-1:cds;Parent=Msa1225280-mRNA-1
chr8_1 CDS 90623224 90623325 90623224 ID=Msa1225280-mRNA-1:cds;Parent=Msa1225280-mRNA-1
chr8_1 CDS 90622870 90622973 90622870 ID=Msa1225280-mRNA-1:cds;Parent=Msa1225280-mRNA-1
chr8_1 CDS 90622652 90622778 90622652 ID=Msa1225280-mRNA-1:cds;Parent=Msa1225280-mRNA-1
chr8_1 CDS 90622275 90622427 90622275 ID=Msa1225280-mRNA-1:cds;Parent=Msa1225280-mRNA-1
chr8_1 CDS 90622021 90622121 90622021 ID=Msa1225280-mRNA-1:cds;Parent=Msa1225280-mRNA-1
chr8_1 CDS 90621705 90621906 90621705 ID=Msa1225280-mRNA-1:cds;Parent=Msa1225280-mRNA-1
chr8_1 CDS 90621208 90621435 90621208 ID=Msa1225280-mRNA-1:cds;Parent=Msa1225280-mRNA-1
chr8_1 three_prime_UTR 90620933 90621207 90620933 ID=Msa1225280-mRNA-1:three_prime_utr;Parent=Msa1225280-mRNA-1
Gene Sequence

>Msa1225280

ATGAAGCTTCAAACTCCAACTCATGCCACGTTATCACCTTCTACTTCTTCCGCCTCCTATACACTCAACAACGCTTCTCCTAATTTCAAGCGTCCTCCGCTGTCGCCACAGGCAATCTGTACCTCTCAGAAAAAGTCCTTCTGCTCTGGAGCTCATGTGGAGGCTTCTGTTAACTCTAATCCTGTGAAAAATTACATAGCAGCCAGTTTTTCTTCACTGCGATCTGAAGCAAAACCCTTGGTTTCCAACCAATCACTCAAAAAGCACATGTTTTCAGTGGGAGCTTTAGTAGCTCGAACAGATCAGGATGTTTCTGATGCAACTCTTACATCTGATGATAAGATTGGAGTGTTATTGCTAAACCTTGGAGGTCCAGAGACTCTAGAAGATGTGCAACCTTTTTTATTTAACCTTTTTGCAGACCCGGATATTATACGATTGCCAAGAATATTTAGTTTTCTTCAAAAGCCATTGGCCCAGTTTGTATCTGTTCTAAGGGCCCCAAAGAGCAGAGAAGGCTACGCTTCAATTGGTGGTGGTTCTCCTCTTAGACGTATAACTGATGCACAGGCTGAAGACTTGAAGAAATCTCTTTCGGAAAAGAATGTCCCTGCTGAAGTGTACGTTGGCATGCGTTACTGGCATCCATTCACTGAGGAAGCTATTGAACAGATTAAAAAGGATGGAGTTACAAAGCTGGTCGTTCTCCCACTTTATCCACAATTTTCAATATCAACCAGTGGCTCAAGCTTACGTCTACTGGAGAGTATATTCCGAGAGGATGAGTATCTAGTCAACATGCAGCACACAGTATTACCTTCATGGTATCAACGTGAAGGATACATAAAGGCCATGTCAAATTTAATTGAAAAAGAACTGAAGAGTTTTGACTGCCCTAAAGAGGTCATGATATTTTTTAGTGCACATGGGGTGCCTCTTGCTTATGTGGAAGAGGCCGGTGATCCTTACAAGGCAGAGATGGAGGAATGTGTGGATTTGATCATGGAAGAGCTTGAGACAAGAAAGATAAGAAATCCCTTCACCCTTGCCTATCAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTATACAGATGAGACAATAGTTGAACTTGGAAAAAAAGGAGTGAAAAGTATGTTGGCTGTTCCAATTAGCTTTGTCAGTGAACATATTGAAACTCTAGAAGAAATTGATGTTGAATACAAAGAATTGGCTCTAGAATCTGGTATAGAAAATTGGGGCCGTGTTCCTGCTCTAGGATGTGAACCCTCCTTCATTTCTGATTTGGCAGATGCTGTTATTGAAAGTCTCCCATATGCTGGTGCCATGGCAGTTTCAAGCCTCGAAGCTCGACAGTCTTTGGTTCCGCTCGGAAGTGTACAAGAGTTATTGGCAGCATATGACTCGCAAAATAGGGAGTTGCCATCGCCGGTGATAGTGTGGGAATGGGGTTTGACAAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGTTAGCTGTGCTGCTTCTTTTGTTTTTTGAAGTCACGACACCTGATAGTATTTTTCACCAATGGGGAATATTATCGCCCTCTCTTAGGTGA

Protein sequence

>Msa1225280

MKLQTPTHATLSPSTSSASYTLNNASPNFKRPPLSPQAICTSQKKSFCSGAHVEASVNSNPVKNYIAASFSSLRSEAKPLVSNQSLKKHMFSVGALVARTDQDVSDATLTSDDKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRIFSFLQKPLAQFVSVLRAPKSREGYASIGGGSPLRRITDAQAEDLKKSLSEKNVPAEVYVGMRYWHPFTEEAIEQIKKDGVTKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVLPSWYQREGYIKAMSNLIEKELKSFDCPKEVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELETRKIRNPFTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSMLAVPISFVSEHIETLEEIDVEYKELALESGIENWGRVPALGCEPSFISDLADAVIESLPYAGAMAVSSLEARQSLVPLGSVQELLAAYDSQNRELPSPVIVWEWGLTKSAETWNGRAAMLAVLLLLFFEVTTPDSIFHQWGILSPSLR*