AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1244940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1244940 MtrunA17_Chr8g0359811 84.813 428 8 3 1 375 1 424 0.0 706
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1244940 AT3G15520.3 54.839 465 114 8 1 375 1 459 2.27e-159 456
Msa1244940 AT3G15520.1 54.839 465 114 8 1 375 1 459 2.27e-159 456
Msa1244940 AT3G15520.2 63.950 319 61 2 111 375 1 319 2.45e-138 397
Msa1244940 AT3G15520.4 55.346 318 99 7 1 281 1 312 3.27e-105 314
Msa1244940 AT3G01480.2 27.155 232 144 6 62 281 59 277 4.14e-15 76.3
Msa1244940 AT3G01480.1 27.155 232 144 6 62 281 59 277 6.14e-15 76.3

Find 112 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGCATCCTGTTCCTTTA+TGG 0.082861 8_2:-34529286 None:intergenic
GCAAAATTCCCTGCAGTTAA+AGG 0.157758 8_2:-34530370 None:intergenic
GTTCTGCCTCTATCTGTTTA+TGG 0.176620 8_2:+34531530 Msa1244940:CDS
GCCTTCATGTTAGGGCTTGC+AGG 0.251495 8_2:-34526989 None:intergenic
GTGCATTCAACTTTAATAGA+TGG 0.257426 8_2:+34528803 Msa1244940:CDS
GTGGAAGTGGTAGTGTAAAA+AGG 0.284734 8_2:-34526602 None:intergenic
ACCTGTATGGCCTTCATGTT+AGG 0.302845 8_2:-34526998 None:intergenic
AGAGCAACTTCACCAGTTCT+AGG 0.313603 8_2:-34526953 None:intergenic
CATCGTCACATTGGCCTAAT+TGG 0.331013 8_2:-34526778 None:intergenic
ACTGAAGGAAAAGGCCTCTT+TGG 0.331824 8_2:+34528781 Msa1244940:CDS
TCGGCAACACGAGGCGGTCT+TGG 0.335245 8_2:-34532079 None:intergenic
TGCTCCCTGAGCAGGTAAAA+AGG 0.342840 8_2:+34532134 Msa1244940:three_prime_UTR
ACTGAACGGTGGAAGCAATT+AGG 0.367614 8_2:-34526859 None:intergenic
CCTCTGTTGTAGGCCGGCTT+AGG 0.375646 8_2:+34531832 Msa1244940:intron
CCTGTTCCTTTATGGATTGA+AGG 0.378050 8_2:-34529278 None:intergenic
CAACCTGCATCTGGAAAATC+AGG 0.387643 8_2:-34532214 None:intergenic
GAACTGGTGAAGTTGCTCTT+AGG 0.391945 8_2:+34526957 Msa1244940:CDS
TGCTTCACAAAGAGCCAATT+AGG 0.403240 8_2:+34526764 Msa1244940:CDS
CACCGTTCAGTTCAGTTCCA+TGG 0.406317 8_2:+34526871 Msa1244940:CDS
GTTGAGTTTGTCATTGAGAA+AGG 0.413149 8_2:+34529792 Msa1244940:CDS
CCCTAACATGAAGGCCATAC+AGG 0.417871 8_2:+34526997 Msa1244940:CDS
CCTTCAATCCATAAAGGAAC+AGG 0.418865 8_2:+34529278 Msa1244940:CDS
CTGTTGTAGGCCGGCTTAGG+AGG 0.421036 8_2:+34531835 Msa1244940:intron
TTTACAACACAACCTGCATC+TGG 0.421240 8_2:-34532223 None:intergenic
AGATGAAAAGGATTCTATAT+TGG 0.426146 8_2:+34528742 Msa1244940:CDS
TTCCCCTCCATTGTTCCATA+AGG 0.429471 8_2:-34528041 None:intergenic
TTTCTCTCTTCTCCACCAAC+TGG 0.443642 8_2:-34529834 None:intergenic
ATTCCACAGAGGAAACCTTA+TGG 0.445351 8_2:+34528026 Msa1244940:CDS
TATTCAGCTCCTTTAACTGC+AGG 0.448722 8_2:+34530361 Msa1244940:CDS
CGTTCCGCAAAGCTTATTGA+AGG 0.449931 8_2:+34532056 Msa1244940:CDS
TTAGATAGCGGTAGATGAAA+AGG 0.452704 8_2:+34528730 Msa1244940:intron
TAAACAGATAGAGGCAGAAC+TGG 0.454960 8_2:-34531527 None:intergenic
AGTTCTCCTTCAATCCATAA+AGG 0.455076 8_2:+34529272 Msa1244940:CDS
CCTGTATGGCCTTCATGTTA+GGG 0.464546 8_2:-34526997 None:intergenic
TCTTACAGTGCTCCCTGAGC+AGG 0.470897 8_2:+34532126 Msa1244940:three_prime_UTR
GACTTTGTGTGGCGGAAGAA+AGG 0.481623 8_2:-34526725 None:intergenic
TGCATTCAACTTTAATAGAT+GGG 0.484069 8_2:+34528804 Msa1244940:CDS
GACACAAAGGTTCCTAGAAC+TGG 0.487336 8_2:+34526941 Msa1244940:CDS
CCTAATCTGTTCTGTGGAAG+TGG 0.487868 8_2:-34526615 None:intergenic
GTTCTAGGAACCTTTGTGTC+CGG 0.488880 8_2:-34526938 None:intergenic
TTGGCCTTCAATAAGCTTTG+CGG 0.489836 8_2:-34532060 None:intergenic
CAATATCCAGTGTAGATTGA+AGG 0.492806 8_2:-34529323 None:intergenic
CTTAGGAGGGATATCATTTG+AGG 0.495914 8_2:+34531849 Msa1244940:CDS
TCGAATCACATGCTTGCTCT+CGG 0.496249 8_2:-34526554 None:intergenic
TACAGAATCGCATTCGCAGC+GGG 0.497810 8_2:-34526911 None:intergenic
AGAACAAAACACAACCTGTA+TGG 0.501201 8_2:-34527011 None:intergenic
AAGATATTTCGTATCTGTTG+AGG 0.501205 8_2:+34528003 Msa1244940:CDS
TGTTTATGGAGCAGTTGCTA+TGG 0.502880 8_2:+34531544 Msa1244940:CDS
AGACGTACTCAACTTTCCTT+CGG 0.510289 8_2:-34532098 None:intergenic
AAAGGGTGGTGGCGAGTGAT+CGG 0.512904 8_2:-34526707 None:intergenic
GGCAGAACTAGAGACATTAC+AGG 0.514286 8_2:+34529347 Msa1244940:CDS
ACTGCTCCATAAACAGATAG+AGG 0.517132 8_2:-34531536 None:intergenic
AAATGATATCCCTCCTAAGC+CGG 0.522397 8_2:-34531845 None:intergenic
GCGAGTGATCGGAATGTTGA+AGG 0.523573 8_2:-34526696 None:intergenic
TTCAACTTTAATAGATGGGA+AGG 0.524283 8_2:+34528808 Msa1244940:CDS
ACTTTGTGTGGCGGAAGAAA+GGG 0.525426 8_2:-34526724 None:intergenic
ATGTGCAGATATACCACCAT+AGG 0.525447 8_2:+34531993 Msa1244940:intron
TTCGAGAAGGTGACTTTGTG+TGG 0.538892 8_2:-34526736 None:intergenic
CCTTCATGTTAGGGCTTGCA+GGG 0.543469 8_2:-34526988 None:intergenic
CCACTTCCACAGAACAGATT+AGG 0.545616 8_2:+34526615 Msa1244940:five_prime_UTR
GGAGGGATATCATTTGAGGA+AGG 0.545622 8_2:+34531853 Msa1244940:CDS
TCTGTATTCGCCGGACACAA+AGG 0.546228 8_2:+34526928 Msa1244940:CDS
CCCTGCAAGCCCTAACATGA+AGG 0.549248 8_2:+34526988 Msa1244940:CDS
ACCAGCGGAACTGAAGGAAA+AGG 0.552137 8_2:+34528772 Msa1244940:CDS
ACGGTGGAAGCAATTAGGAT+TGG 0.562553 8_2:-34526854 None:intergenic
ATATTGCGGCAACAGGCACC+TGG 0.563706 8_2:+34529488 Msa1244940:intron
GTGAAACTGTGTAATTTGAA+AGG 0.564757 8_2:-34532349 None:intergenic
TGTTGTAGGCCGGCTTAGGA+GGG 0.566790 8_2:+34531836 Msa1244940:intron
GGCTCATAACGAAGCTTCTG+AGG 0.571419 8_2:+34531565 Msa1244940:CDS
TCTGTTGCCGGGGCAATACA+CGG 0.572281 8_2:+34529520 Msa1244940:CDS
TTTGTCATTGAGAAAGGAGA+CGG 0.572532 8_2:+34529798 Msa1244940:CDS
AAGTATACCAGCGGAACTGA+AGG 0.574421 8_2:+34528766 Msa1244940:CDS
TCAATCTACACTGGATATTG+TGG 0.574665 8_2:+34529326 Msa1244940:CDS
TGTGACGATGACACGTCACT+TGG 0.575269 8_2:+34526791 Msa1244940:CDS
GAGAATATCTCTCCCTATGG+TGG 0.583172 8_2:-34532006 None:intergenic
GAGGGATATCATTTGAGGAA+GGG 0.583536 8_2:+34531854 Msa1244940:CDS
AAACCTTATGGAACAATGGA+GGG 0.584507 8_2:+34528038 Msa1244940:CDS
AGACCGCCTCGTGTTGCCGA+AGG 0.589819 8_2:+34532082 Msa1244940:CDS
GGGGAGAATATCTCTCCCTA+TGG 0.590339 8_2:-34532009 None:intergenic
GGATATTCCGTGTATTGCCC+CGG 0.591341 8_2:-34529527 None:intergenic
TGTGAACCTTCAATCTACAC+TGG 0.593107 8_2:+34529317 Msa1244940:CDS
GTTCCATAAGGTTTCCTCTG+TGG 0.593482 8_2:-34528029 None:intergenic
AACTTTCCTTCGGCAACACG+AGG 0.594186 8_2:-34532088 None:intergenic
TGCGGAACGAATGATATCCC+CGG 0.594728 8_2:-34532042 None:intergenic
TAAAGTTGAATGCACCAAAG+AGG 0.604599 8_2:-34528795 None:intergenic
ATTCAGCTCCTTTAACTGCA+GGG 0.605738 8_2:+34530362 Msa1244940:CDS
TGCGCGCCTAATCTGTTCTG+TGG 0.607064 8_2:-34526621 None:intergenic
GTGACGTGTCATCGTCACAT+TGG 0.615916 8_2:-34526787 None:intergenic
GAAACCTTATGGAACAATGG+AGG 0.616389 8_2:+34528037 Msa1244940:CDS
TTTCCTTCGGCAACACGAGG+CGG 0.622511 8_2:-34532085 None:intergenic
AGAAGACACGTAAGGAACCA+TGG 0.625125 8_2:-34526888 None:intergenic
TGTGGCGGAAGAAAGGGTGG+TGG 0.625221 8_2:-34526718 None:intergenic
GAGGAAACCTTATGGAACAA+TGG 0.627363 8_2:+34528034 Msa1244940:CDS
GGCAACAGAAAAGATAGACC+AGG 0.630813 8_2:-34529506 None:intergenic
AACCTTATGGAACAATGGAG+GGG 0.632285 8_2:+34528039 Msa1244940:CDS
GTGAAGCAGAAGATTCGAGA+AGG 0.633102 8_2:-34526749 None:intergenic
TTGTGTGGCGGAAGAAAGGG+TGG 0.634669 8_2:-34526721 None:intergenic
TGTGCAGATATACCACCATA+GGG 0.644025 8_2:+34531994 Msa1244940:intron
GGCAATACACGGAATATCCA+CGG 0.644795 8_2:+34529531 Msa1244940:CDS
GAATGCGATTCTGTATTCGC+CGG 0.647570 8_2:+34526919 Msa1244940:CDS
ATGTTGAAGGAAGAAGAGAG+AGG 0.656967 8_2:-34526683 None:intergenic
AACCATGGAACTGAACTGAA+CGG 0.659365 8_2:-34526873 None:intergenic
GCAGCGGGAGAAGACACGTA+AGG 0.664077 8_2:-34526896 None:intergenic
GAGAAGGTGACTTTGTGTGG+CGG 0.672767 8_2:-34526733 None:intergenic
CGTCACTTGGTATAACTCAG+AGG 0.681064 8_2:+34526804 Msa1244940:CDS
TGTGATTCGAAGCTGAACCA+CGG 0.689812 8_2:+34526567 Msa1244940:five_prime_UTR
ATACAGAATCGCATTCGCAG+CGG 0.692269 8_2:-34526912 None:intergenic
TATATTGGCAAGTATACCAG+CGG 0.697073 8_2:+34528757 Msa1244940:CDS
CATGGAACTGAACTGAACGG+TGG 0.719811 8_2:-34526870 None:intergenic
ATCTGTTGAGGATTCCACAG+AGG 0.745433 8_2:+34528015 Msa1244940:CDS
CAAATTACACAGTTTCACCG+CGG 0.760603 8_2:+34532354 Msa1244940:three_prime_UTR
AAAGGGACACGTGTACACCG+TGG 0.777812 8_2:-34526584 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTCAAGTATAAAATAT+AGG - chr8_2:34530829-34530848 None:intergenic 10.0%
!!! ATTTTAAGAAAACAAATATA+AGG - chr8_2:34531674-34531693 None:intergenic 10.0%
!!! TTATGTTTTTGTTTTTATTT+TGG + chr8_2:34531964-34531983 Msa1244940:intron 10.0%
!!! TATGTTTTTGTTTTTATTTT+GGG + chr8_2:34531965-34531984 Msa1244940:intron 10.0%
!! AATTATTCTCACAATAAATA+AGG + chr8_2:34527768-34527787 Msa1244940:intron 15.0%
!! ATTATTCTCACAATAAATAA+GGG + chr8_2:34527769-34527788 Msa1244940:intron 15.0%
!!! AATCAAAATATTGCAAATTT+TGG - chr8_2:34527867-34527886 None:intergenic 15.0%
!! AGTTTCTATAAAAAAATAGT+TGG - chr8_2:34527942-34527961 None:intergenic 15.0%
!! ATAAAAAGTTCATGATTAAT+AGG - chr8_2:34530619-34530638 None:intergenic 15.0%
!! TTTAATGTGAAACTAATATA+AGG + chr8_2:34530943-34530962 Msa1244940:intron 15.0%
!! TTAATGTGAAACTAATATAA+GGG + chr8_2:34530944-34530963 Msa1244940:intron 15.0%
!! CTTAAAAATGTATTTATAAG+TGG - chr8_2:34531208-34531227 None:intergenic 15.0%
!!! CACTTATAAATACATTTTTA+AGG + chr8_2:34531206-34531225 Msa1244940:intron 15.0%
!!! ACTTAATGTTGTTTTATAAA+GGG - chr8_2:34531399-34531418 None:intergenic 15.0%
!!! ATGTTTTTGTTTTTATTTTG+GGG + chr8_2:34531966-34531985 Msa1244940:intron 15.0%
!! TTATGTATAATAAACTTGTG+TGG + chr8_2:34527063-34527082 Msa1244940:intron 20.0%
!!! ATAGGTTACTATTTCTTTTT+GGG - chr8_2:34527436-34527455 None:intergenic 20.0%
!!! AATAGGTTACTATTTCTTTT+TGG - chr8_2:34527437-34527456 None:intergenic 20.0%
!!! TTGAAGTTTTTTAGATTAGA+AGG - chr8_2:34527468-34527487 None:intergenic 20.0%
!! TAATGTTGAAAATGATCAAA+TGG + chr8_2:34527817-34527836 Msa1244940:intron 20.0%
!!! ATATTTTGATTCGCATAAAA+AGG + chr8_2:34527876-34527895 Msa1244940:intron 20.0%
!!! AAAGTATTAGAAAGAAAGTT+GGG + chr8_2:34528391-34528410 Msa1244940:intron 20.0%
!!! ATGAAAAATCACTGATTATT+AGG + chr8_2:34528435-34528454 Msa1244940:intron 20.0%
!! TACAATTAATCAAATAATCG+AGG - chr8_2:34528853-34528872 None:intergenic 20.0%
!!! TATTTTTTCTGTTAGAAAGA+AGG - chr8_2:34528891-34528910 None:intergenic 20.0%
!!! TTTGTTATATAATTCTCACA+TGG + chr8_2:34529188-34529207 Msa1244940:intron 20.0%
!!! ATTGATTCAGTCATTTTAAT+TGG - chr8_2:34529428-34529447 None:intergenic 20.0%
!! TCAATGTAACACTTATATTA+TGG + chr8_2:34529443-34529462 Msa1244940:intron 20.0%
!! AATCCATAAACATTAAGAAA+AGG + chr8_2:34529945-34529964 Msa1244940:intron 20.0%
!!! TATTTATTTTGAGATAAGCT+TGG + chr8_2:34530120-34530139 Msa1244940:intron 20.0%
!!! TTCTTTGCTAAAACTTATTT+TGG + chr8_2:34530195-34530214 Msa1244940:intron 20.0%
!!! TGTTCATTTTTTTACTTGAA+TGG + chr8_2:34530553-34530572 Msa1244940:intron 20.0%
!!! AAAATTACTTGTTTTGCTTT+TGG + chr8_2:34530686-34530705 Msa1244940:intron 20.0%
!!! AAATTACTTGTTTTGCTTTT+GGG + chr8_2:34530687-34530706 Msa1244940:intron 20.0%
!! TTTGAATAGAGAATAAAGAA+TGG + chr8_2:34530717-34530736 Msa1244940:intron 20.0%
!!! GTTGATTTTAATGATTAATG+AGG + chr8_2:34530857-34530876 Msa1244940:intron 20.0%
!!! AATTTGATTTTACCATCATT+TGG + chr8_2:34531135-34531154 Msa1244940:intron 20.0%
!!! ATTTGATTTTACCATCATTT+GGG + chr8_2:34531136-34531155 Msa1244940:intron 20.0%
!!! CTTAATGTTGTTTTATAAAG+GGG - chr8_2:34531398-34531417 None:intergenic 20.0%
!!! CACTTAATGTTGTTTTATAA+AGG - chr8_2:34531400-34531419 None:intergenic 20.0%
!! AGATAGAAGAAAAATTGATA+AGG - chr8_2:34531602-34531621 None:intergenic 20.0%
!! TCTATGATAAAAGAAATGTA+AGG + chr8_2:34531621-34531640 Msa1244940:intron 20.0%
!! CTATGATAAAAGAAATGTAA+GGG + chr8_2:34531622-34531641 Msa1244940:intron 20.0%
!!! CATGTTTTTAAAAACTAGAA+CGG + chr8_2:34531750-34531769 Msa1244940:intron 20.0%
!!! ATGTTTTTAAAAACTAGAAC+GGG + chr8_2:34531751-34531770 Msa1244940:intron 20.0%
!! CAATTGAAAAGAAAAAACAA+AGG - chr8_2:34531778-34531797 None:intergenic 20.0%
!!! TATAATCTTCTGAATCATTT+TGG + chr8_2:34531914-34531933 Msa1244940:intron 20.0%
! ATCAAAGAAATGCATTGAAA+TGG + chr8_2:34527489-34527508 Msa1244940:intron 25.0%
! AATGGTTAATTGCAAATTGA+TGG + chr8_2:34527507-34527526 Msa1244940:intron 25.0%
! TGATTCTAAACTATAAAGCA+CGG + chr8_2:34527543-34527562 Msa1244940:intron 25.0%
! TTCAGTGTAATTATATGTGT+TGG - chr8_2:34527602-34527621 None:intergenic 25.0%
! TCTAAAAAAATTAGCTGTGT+CGG + chr8_2:34527633-34527652 Msa1244940:intron 25.0%
!!! TTTTTAGAATCTATGAAGCA+CGG - chr8_2:34527700-34527719 None:intergenic 25.0%
!! TAGATTCTAAAAATAGCCTT+TGG + chr8_2:34527707-34527726 Msa1244940:intron 25.0%
!! GTTTAATATCTGAAATCACA+TGG + chr8_2:34528120-34528139 Msa1244940:intron 25.0%
! AGATGCATTATAAGAAATAC+TGG + chr8_2:34528154-34528173 Msa1244940:intron 25.0%
! TTACCACTTTATCATATAGT+AGG - chr8_2:34528281-34528300 None:intergenic 25.0%
!!! GAAAGTATTAGAAAGAAAGT+TGG + chr8_2:34528390-34528409 Msa1244940:intron 25.0%
! CATTAATTCAATTGAACAGA+GGG - chr8_2:34528489-34528508 None:intergenic 25.0%
! TCATTAATTCAATTGAACAG+AGG - chr8_2:34528490-34528509 None:intergenic 25.0%
!!! TTCTTCCTTATTTTAGATAG+CGG + chr8_2:34528718-34528737 Msa1244940:intron 25.0%
! AGATGAAAAGGATTCTATAT+TGG + chr8_2:34528742-34528761 Msa1244940:CDS 25.0%
! TGCATTCAACTTTAATAGAT+GGG + chr8_2:34528804-34528823 Msa1244940:CDS 25.0%
! TATTCACGTTTCAACATAAT+TGG + chr8_2:34528909-34528928 Msa1244940:intron 25.0%
! GGATATGTTTATGATGATTT+CGG + chr8_2:34528930-34528949 Msa1244940:intron 25.0%
!!! TGTGTTACTTTTTTTGTTGT+AGG + chr8_2:34529147-34529166 Msa1244940:intron 25.0%
! CAAGATAGCATCATATTATT+TGG - chr8_2:34529382-34529401 None:intergenic 25.0%
! TTAATCTGATCTTGATATTG+CGG + chr8_2:34529474-34529493 Msa1244940:intron 25.0%
! ACGTCAAAATATACATTAGA+GGG - chr8_2:34529613-34529632 None:intergenic 25.0%
! TACGTCAAAATATACATTAG+AGG - chr8_2:34529614-34529633 None:intergenic 25.0%
! AAATTCAATAGTCAGAAGAA+GGG + chr8_2:34529717-34529736 Msa1244940:intron 25.0%
!!! CATCTTCGTAATTTTTTTGT+AGG + chr8_2:34529751-34529770 Msa1244940:intron 25.0%
!!! TAATTTTTTTGTAGGCTTTC+AGG + chr8_2:34529759-34529778 Msa1244940:intron 25.0%
!!! AATTTTTTTGTAGGCTTTCA+GGG + chr8_2:34529760-34529779 Msa1244940:intron 25.0%
! TAATCATAAAGGACAAGTTA+TGG - chr8_2:34529888-34529907 None:intergenic 25.0%
!! TTTATGGATTGTTTAAGACT+AGG - chr8_2:34529935-34529954 None:intergenic 25.0%
!! TTAAGAAAAGGTCCATTTTA+AGG + chr8_2:34529957-34529976 Msa1244940:intron 25.0%
!!! ACTGTTTTTCTTAATCTATC+TGG - chr8_2:34530014-34530033 None:intergenic 25.0%
!!! TGCTAAAACTTATTTTGGAA+TGG + chr8_2:34530200-34530219 Msa1244940:intron 25.0%
!!! AAAACTTATTTTGGAATGGA+TGG + chr8_2:34530204-34530223 Msa1244940:intron 25.0%
! TATCATGGTTTATCCATATT+TGG + chr8_2:34530492-34530511 Msa1244940:intron 25.0%
! TGAACATAAGTTTAAGAATG+TGG - chr8_2:34530746-34530765 None:intergenic 25.0%
! ACATTCTTAAACTTATGTTC+AGG + chr8_2:34530745-34530764 Msa1244940:intron 25.0%
! TAAAACAACATTAAGTGTAC+AGG + chr8_2:34531403-34531422 Msa1244940:intron 25.0%
!! TCATTTTCTTATGTGTCTTT+TGG + chr8_2:34531489-34531508 Msa1244940:intron 25.0%
!! AACAAATATAAGGCTTTTAG+CGG - chr8_2:34531664-34531683 None:intergenic 25.0%
! TAATGCAAAATAAGAGTGAA+AGG + chr8_2:34531698-34531717 Msa1244940:intron 25.0%
!!! CAAATTACACTTTTTCACTA+TGG + chr8_2:34532277-34532296 Msa1244940:three_prime_UTR 25.0%
ATAATAAACTTGTGTGGTGA+AGG + chr8_2:34527069-34527088 Msa1244940:intron 30.0%
TTCCAACAAATTCTTGTGTT+GGG + chr8_2:34527266-34527285 Msa1244940:intron 30.0%
AGATTAAAAACACCAAGTCA+TGG + chr8_2:34527350-34527369 Msa1244940:intron 30.0%
GATTAAAAACACCAAGTCAT+GGG + chr8_2:34527351-34527370 Msa1244940:intron 30.0%
ATTAGAAGGAGCAACTAAAT+AGG - chr8_2:34527454-34527473 None:intergenic 30.0%
AAGATATGAAAAGACACCAA+AGG - chr8_2:34527726-34527745 None:intergenic 30.0%
! GTGTCTTTTCATATCTTTCT+TGG + chr8_2:34527729-34527748 Msa1244940:intron 30.0%
! ACAATAAATAAGGGTATACG+AGG + chr8_2:34527778-34527797 Msa1244940:intron 30.0%
TGTTACAATGATGCTAATTC+AGG + chr8_2:34527971-34527990 Msa1244940:intron 30.0%
AAGATATTTCGTATCTGTTG+AGG + chr8_2:34528003-34528022 Msa1244940:CDS 30.0%
!! GAACGTAAAGAAAGTTTTGA+AGG + chr8_2:34528061-34528080 Msa1244940:CDS 30.0%
TGCATTATAAGAAATACTGG+AGG + chr8_2:34528157-34528176 Msa1244940:intron 30.0%
GCATTATAAGAAATACTGGA+GGG + chr8_2:34528158-34528177 Msa1244940:intron 30.0%
ATATAGAAGATGCAAACCAT+AGG + chr8_2:34528183-34528202 Msa1244940:intron 30.0%
TATATTGCACATGAATCCTA+TGG - chr8_2:34528202-34528221 None:intergenic 30.0%
ATAGGATTCATGTGCAATAT+AGG + chr8_2:34528201-34528220 Msa1244940:intron 30.0%
AAATTTACCTGTAAACTCGA+GGG - chr8_2:34528240-34528259 None:intergenic 30.0%
AAAATTTACCTGTAAACTCG+AGG - chr8_2:34528241-34528260 None:intergenic 30.0%
AGACCTACTATATGATAAAG+TGG + chr8_2:34528275-34528294 Msa1244940:intron 30.0%
TCAGATGCAAACTTTATGAT+GGG + chr8_2:34528332-34528351 Msa1244940:intron 30.0%
! ATCTACCGCTATCTAAAATA+AGG - chr8_2:34528726-34528745 None:intergenic 30.0%
GTGCATTCAACTTTAATAGA+TGG + chr8_2:34528803-34528822 Msa1244940:CDS 30.0%
TTCAACTTTAATAGATGGGA+AGG + chr8_2:34528808-34528827 Msa1244940:CDS 30.0%
ATTTCGGTCAATTTAACTCA+GGG + chr8_2:34528946-34528965 Msa1244940:intron 30.0%
! AAGGTATATCGGCTATATAT+AGG - chr8_2:34529031-34529050 None:intergenic 30.0%
GATATAAGCACAAGGTATAT+CGG - chr8_2:34529042-34529061 None:intergenic 30.0%
TAATTCTCACATGGTAGTTA+TGG + chr8_2:34529197-34529216 Msa1244940:intron 30.0%
CATTCTGATAGCTTCTATAA+TGG - chr8_2:34529224-34529243 None:intergenic 30.0%
! AATGATATCAGCATTTTGCA+GGG + chr8_2:34529240-34529259 Msa1244940:intron 30.0%
!!! AAACTGACATGTCATTTTGA+AGG - chr8_2:34529566-34529585 None:intergenic 30.0%
CAAATTCAATAGTCAGAAGA+AGG + chr8_2:34529716-34529735 Msa1244940:intron 30.0%
! ATTGAATTTTACCTGAATGG+TGG - chr8_2:34529865-34529884 None:intergenic 30.0%
! TGGATTGAATTTTACCTGAA+TGG - chr8_2:34529868-34529887 None:intergenic 30.0%
TGTCCTTTATGATTATCCAT+TGG + chr8_2:34529893-34529912 Msa1244940:intron 30.0%
CAACCAATGGATAATCATAA+AGG - chr8_2:34529899-34529918 None:intergenic 30.0%
! GGACCTTTTCTTAATGTTTA+TGG - chr8_2:34529951-34529970 None:intergenic 30.0%
ATCTTGAGTGTTCCTTAAAA+TGG - chr8_2:34529972-34529991 None:intergenic 30.0%
ACTCAAGATAAGCATCTTTA+AGG + chr8_2:34529983-34530002 Msa1244940:intron 30.0%
CATAACTGCAAATATGTAGT+TGG + chr8_2:34530242-34530261 Msa1244940:intron 30.0%
GTGCATTGAAAGTTTAATGT+TGG + chr8_2:34530280-34530299 Msa1244940:intron 30.0%
! GAAAGTTTAATGTTGGTAGA+CGG + chr8_2:34530287-34530306 Msa1244940:intron 30.0%
! AATATCCATCTAAAACAACC+TGG - chr8_2:34530345-34530364 None:intergenic 30.0%
! TTCATTTTCATCGCTTATCA+TGG + chr8_2:34530477-34530496 Msa1244940:intron 30.0%
GATTAATAGGAAGTCAGTAA+TGG - chr8_2:34530606-34530625 None:intergenic 30.0%
CGTGATAAAATTTCTGTATG+AGG + chr8_2:34530783-34530802 Msa1244940:intron 30.0%
TATGAGGAGAATATAGTAAC+TGG + chr8_2:34530799-34530818 Msa1244940:intron 30.0%
! TCAACTTTTAAACGAAACCT+TGG + chr8_2:34530885-34530904 Msa1244940:intron 30.0%
TATGGCAATATACAACTTTG+AGG + chr8_2:34530915-34530934 Msa1244940:intron 30.0%
! CAATATACAACTTTGAGGAA+TGG + chr8_2:34530920-34530939 Msa1244940:intron 30.0%
GGAAATTATGTGTTGCAATT+TGG + chr8_2:34531009-34531028 Msa1244940:intron 30.0%
!! ATTTTACCATCATTTGGGTT+AGG + chr8_2:34531141-34531160 Msa1244940:intron 30.0%
TAAGGCATATCTATCTAATG+TGG + chr8_2:34531224-34531243 Msa1244940:intron 30.0%
! TTTCTTATGTGTCTTTTGGA+AGG + chr8_2:34531493-34531512 Msa1244940:intron 30.0%
! ACAAATATAAGGCTTTTAGC+GGG - chr8_2:34531663-34531682 None:intergenic 30.0%
! TTATTCTTTTCCTCTGTTGT+AGG + chr8_2:34531822-34531841 Msa1244940:intron 30.0%
! AAGGGCAATTTTCAGTTTTT+GGG + chr8_2:34531872-34531891 Msa1244940:CDS 30.0%
GTGAAACTGTGTAATTTGAA+AGG - chr8_2:34532352-34532371 None:intergenic 30.0%
! TGGAAGTGGTAGTGTAAAAA+GGG - chr8_2:34526604-34526623 None:intergenic 35.0%
CCATTGATGTGAAAAAAGAG+TGG - chr8_2:34526658-34526677 None:intergenic 35.0%
!!! CCACTCTTTTTTCACATCAA+TGG + chr8_2:34526655-34526674 Msa1244940:exon 35.0%
AGAACAAAACACAACCTGTA+TGG - chr8_2:34527014-34527033 None:intergenic 35.0%
GTCTTAAGTTCGAATCATTG+AGG + chr8_2:34527122-34527141 Msa1244940:intron 35.0%
TGAGGTTTCAACAATTCTGT+TGG + chr8_2:34527140-34527159 Msa1244940:intron 35.0%
AACAATTCTGTTGGAACACA+TGG + chr8_2:34527149-34527168 Msa1244940:intron 35.0%
ATTCAGCCTAGTAATCTCTT+CGG + chr8_2:34527208-34527227 Msa1244940:intron 35.0%
GTTCCAACAAATTCTTGTGT+TGG + chr8_2:34527265-34527284 Msa1244940:intron 35.0%
GAAGTTGGAACGAAATTAGA+AGG + chr8_2:34527322-34527341 Msa1244940:intron 35.0%
TTGGAACGAAATTAGAAGGT+TGG + chr8_2:34527326-34527345 Msa1244940:intron 35.0%
ATTCGCATAAAAAGGACTGA+TGG + chr8_2:34527884-34527903 Msa1244940:intron 35.0%
TTCGCATAAAAAGGACTGAT+GGG + chr8_2:34527885-34527904 Msa1244940:intron 35.0%
AAACCTTATGGAACAATGGA+GGG + chr8_2:34528038-34528057 Msa1244940:CDS 35.0%
AAAATAACCCTCGAGTTTAC+AGG + chr8_2:34528230-34528249 Msa1244940:intron 35.0%
CTCAGATGCAAACTTTATGA+TGG + chr8_2:34528331-34528350 Msa1244940:intron 35.0%
TGGAATCCACAAGACAAAAT+AGG + chr8_2:34528358-34528377 Msa1244940:intron 35.0%
! CTCATTCCTATTTTGTCTTG+TGG - chr8_2:34528367-34528386 None:intergenic 35.0%
GGGTCTGTAAAATCTTAGAA+AGG - chr8_2:34528469-34528488 None:intergenic 35.0%
CCAAGGCTTAAAAGATGTTA+TGG - chr8_2:34528572-34528591 None:intergenic 35.0%
! CCATAACATCTTTTAAGCCT+TGG + chr8_2:34528569-34528588 Msa1244940:intron 35.0%
TGAAACGTCGTATTCATACA+AGG + chr8_2:34528675-34528694 Msa1244940:intron 35.0%
! TTAGATAGCGGTAGATGAAA+AGG + chr8_2:34528730-34528749 Msa1244940:intron 35.0%
TATATTGGCAAGTATACCAG+CGG + chr8_2:34528757-34528776 Msa1244940:CDS 35.0%
TAAAGTTGAATGCACCAAAG+AGG - chr8_2:34528798-34528817 None:intergenic 35.0%
GATTTCGGTCAATTTAACTC+AGG + chr8_2:34528945-34528964 Msa1244940:intron 35.0%
!! AGGTTGCTGATTCTAGAAAA+AGG + chr8_2:34529066-34529085 Msa1244940:intron 35.0%
! GAATGATATCAGCATTTTGC+AGG + chr8_2:34529239-34529258 Msa1244940:intron 35.0%
! ATGATATCAGCATTTTGCAG+GGG + chr8_2:34529241-34529260 Msa1244940:intron 35.0%
AGTTCTCCTTCAATCCATAA+AGG + chr8_2:34529272-34529291 Msa1244940:CDS 35.0%
CAATATCCAGTGTAGATTGA+AGG - chr8_2:34529326-34529345 None:intergenic 35.0%
TCAATCTACACTGGATATTG+TGG + chr8_2:34529326-34529345 Msa1244940:CDS 35.0%
! ACTAGTCTCATGTCAAATGA+TGG - chr8_2:34529649-34529668 None:intergenic 35.0%
TCATTCTTAGTGCAATTCCT+TGG + chr8_2:34529692-34529711 Msa1244940:intron 35.0%
CTGACTATTGAATTTGTCCA+AGG - chr8_2:34529712-34529731 None:intergenic 35.0%
GTTGAGTTTGTCATTGAGAA+AGG + chr8_2:34529792-34529811 Msa1244940:CDS 35.0%
TTTGTCATTGAGAAAGGAGA+CGG + chr8_2:34529798-34529817 Msa1244940:CDS 35.0%
TCGATCAAATCAACAACCAA+TGG - chr8_2:34529912-34529931 None:intergenic 35.0%
! GGAATTTTGCAAAACTGGTA+AGG + chr8_2:34530383-34530402 Msa1244940:intron 35.0%
AAATGAAGAGCGATATACAC+TGG - chr8_2:34530464-34530483 None:intergenic 35.0%
CTGGTAAATCAGACCAAATA+TGG - chr8_2:34530508-34530527 None:intergenic 35.0%
! ATTTAGTTCACTCAGAGAAC+TGG - chr8_2:34530527-34530546 None:intergenic 35.0%
! TATTGCCATAGTTGTTTCCA+AGG - chr8_2:34530905-34530924 None:intergenic 35.0%
TATAAGGGATGAGAGCAATA+AGG + chr8_2:34530959-34530978 Msa1244940:intron 35.0%
ATGAGAGCAATAAGGAAGTA+TGG + chr8_2:34530967-34530986 Msa1244940:intron 35.0%
GCATATATTGCTGTATAACG+TGG + chr8_2:34531072-34531091 Msa1244940:intron 35.0%
!! CCTTACAAACCGATTTTGTA+GGG - chr8_2:34531172-34531191 None:intergenic 35.0%
!! TTATGTGTCTTTTGGAAGGA+TGG + chr8_2:34531497-34531516 Msa1244940:intron 35.0%
!! TATGTGTCTTTTGGAAGGAT+GGG + chr8_2:34531498-34531517 Msa1244940:intron 35.0%
! CAAATATAAGGCTTTTAGCG+GGG - chr8_2:34531662-34531681 None:intergenic 35.0%
TGCAAAATAAGAGTGAAAGG+TGG + chr8_2:34531701-34531720 Msa1244940:intron 35.0%
! GAAGGGCAATTTTCAGTTTT+TGG + chr8_2:34531871-34531890 Msa1244940:CDS 35.0%
! GTGGAAGTGGTAGTGTAAAA+AGG - chr8_2:34526605-34526624 None:intergenic 40.0%
ATGTTGAAGGAAGAAGAGAG+AGG - chr8_2:34526686-34526705 None:intergenic 40.0%
TGCTTCACAAAGAGCCAATT+AGG + chr8_2:34526764-34526783 Msa1244940:CDS 40.0%
AACCATGGAACTGAACTGAA+CGG - chr8_2:34526876-34526895 None:intergenic 40.0%
TTCGAACTTAAGACCTTGTG+AGG - chr8_2:34527116-34527135 None:intergenic 40.0%
GACCCAACACAAGAATTTGT+TGG - chr8_2:34527271-34527290 None:intergenic 40.0%
!! TATATGTGTTGGTGTCGTGT+CGG - chr8_2:34527591-34527610 None:intergenic 40.0%
! GTTAGTGTCTGTGTCTTGTT+CGG + chr8_2:34527659-34527678 Msa1244940:intron 40.0%
GAATCTATGAAGCACGGATA+CGG - chr8_2:34527694-34527713 None:intergenic 40.0%
ATTCCACAGAGGAAACCTTA+TGG + chr8_2:34528026-34528045 Msa1244940:CDS 40.0%
GAGGAAACCTTATGGAACAA+TGG + chr8_2:34528034-34528053 Msa1244940:CDS 40.0%
GAAACCTTATGGAACAATGG+AGG + chr8_2:34528037-34528056 Msa1244940:CDS 40.0%
AACCTTATGGAACAATGGAG+GGG + chr8_2:34528039-34528058 Msa1244940:CDS 40.0%
ATCTGAGCATCTCTGTAACA+TGG - chr8_2:34528318-34528337 None:intergenic 40.0%
!! GCAAACTTTATGATGGGTCA+TGG + chr8_2:34528338-34528357 Msa1244940:intron 40.0%
ATCAACGAAAAGACACACCA+AGG - chr8_2:34528589-34528608 None:intergenic 40.0%
ACCTTGTGCTTATATCACAC+AGG + chr8_2:34529046-34529065 Msa1244940:intron 40.0%
ACCTGTGTGATATAAGCACA+AGG - chr8_2:34529050-34529069 None:intergenic 40.0%
! TGATATCAGCATTTTGCAGG+GGG + chr8_2:34529242-34529261 Msa1244940:intron 40.0%
! CCTGTTCCTTTATGGATTGA+AGG - chr8_2:34529281-34529300 None:intergenic 40.0%
CCTTCAATCCATAAAGGAAC+AGG + chr8_2:34529278-34529297 Msa1244940:CDS 40.0%
ATCTGCATCCTGTTCCTTTA+TGG - chr8_2:34529289-34529308 None:intergenic 40.0%
TGTGAACCTTCAATCTACAC+TGG + chr8_2:34529317-34529336 Msa1244940:CDS 40.0%
ACTAGAGACATTACAGGTGA+TGG + chr8_2:34529353-34529372 Msa1244940:intron 40.0%
! TGGTCTATCTTTTCTGTTGC+CGG + chr8_2:34529508-34529527 Msa1244940:CDS 40.0%
TTCAATAGTCAGAAGAAGGG+AGG + chr8_2:34529720-34529739 Msa1244940:intron 40.0%
! GGTTCAACATTTTCTCCAGT+TGG + chr8_2:34529819-34529838 Msa1244940:CDS 40.0%
! TCAACATTTTCTCCAGTTGG+TGG + chr8_2:34529822-34529841 Msa1244940:CDS 40.0%
CTGACAGTTAATTACTTGCC+AGG + chr8_2:34530324-34530343 Msa1244940:intron 40.0%
!!! ACTTGCCAGGTTGTTTTAGA+TGG + chr8_2:34530337-34530356 Msa1244940:intron 40.0%
TATTCAGCTCCTTTAACTGC+AGG + chr8_2:34530361-34530380 Msa1244940:CDS 40.0%
ATTCAGCTCCTTTAACTGCA+GGG + chr8_2:34530362-34530381 Msa1244940:CDS 40.0%
GCAAAATTCCCTGCAGTTAA+AGG - chr8_2:34530373-34530392 None:intergenic 40.0%
! TGCAGGGAATTTTGCAAAAC+TGG + chr8_2:34530378-34530397 Msa1244940:CDS 40.0%
GAGCGATATACACTGGATAT+TGG - chr8_2:34530457-34530476 None:intergenic 40.0%
!! AGGAAGTCAGTAATGGATTC+AGG - chr8_2:34530599-34530618 None:intergenic 40.0%
CGAAACCTTGGAAACAACTA+TGG + chr8_2:34530897-34530916 Msa1244940:intron 40.0%
TAGGCTGAACCCTACAAAAT+CGG + chr8_2:34531160-34531179 Msa1244940:intron 40.0%
!! CCCTACAAAATCGGTTTGTA+AGG + chr8_2:34531169-34531188 Msa1244940:intron 40.0%
!! GCCTTACAAACCGATTTTGT+AGG - chr8_2:34531173-34531192 None:intergenic 40.0%
CACTCAGTCACATATCCTTT+AGG + chr8_2:34531257-34531276 Msa1244940:intron 40.0%
GTCACATATCCTTTAGGTGA+TGG + chr8_2:34531263-34531282 Msa1244940:intron 40.0%
!! CATATCCTTTAGGTGATGGA+TGG + chr8_2:34531267-34531286 Msa1244940:intron 40.0%
!! GTGATGGATGGAGCATATAA+TGG + chr8_2:34531279-34531298 Msa1244940:intron 40.0%
CAAGCTATTCTCTCAGAAAC+CGG + chr8_2:34531311-34531330 Msa1244940:intron 40.0%
!! ATGTGTCTTTTGGAAGGATG+GGG + chr8_2:34531499-34531518 Msa1244940:intron 40.0%
TAAACAGATAGAGGCAGAAC+TGG - chr8_2:34531530-34531549 None:intergenic 40.0%
GTTCTGCCTCTATCTGTTTA+TGG + chr8_2:34531530-34531549 Msa1244940:CDS 40.0%
AAATGATATCCCTCCTAAGC+CGG - chr8_2:34531848-34531867 None:intergenic 40.0%
CTTAGGAGGGATATCATTTG+AGG + chr8_2:34531849-34531868 Msa1244940:CDS 40.0%
GAGGGATATCATTTGAGGAA+GGG + chr8_2:34531854-34531873 Msa1244940:CDS 40.0%
ATGTGCAGATATACCACCAT+AGG + chr8_2:34531993-34532012 Msa1244940:intron 40.0%
TGTGCAGATATACCACCATA+GGG + chr8_2:34531994-34532013 Msa1244940:intron 40.0%
ATTCTCCCCGAGATAAAAAC+CGG + chr8_2:34532023-34532042 Msa1244940:CDS 40.0%
! ATATCCCCGGTTTTTATCTC+GGG - chr8_2:34532032-34532051 None:intergenic 40.0%
! GATATCCCCGGTTTTTATCT+CGG - chr8_2:34532033-34532052 None:intergenic 40.0%
! TTGGCCTTCAATAAGCTTTG+CGG - chr8_2:34532063-34532082 None:intergenic 40.0%
AGACGTACTCAACTTTCCTT+CGG - chr8_2:34532101-34532120 None:intergenic 40.0%
! GAAACCTTTTTACCTGCTCA+GGG - chr8_2:34532141-34532160 None:intergenic 40.0%
! TGAAACCTTTTTACCTGCTC+AGG - chr8_2:34532142-34532161 None:intergenic 40.0%
TTTACAACACAACCTGCATC+TGG - chr8_2:34532226-34532245 None:intergenic 40.0%
TGTGATTCGAAGCTGAACCA+CGG + chr8_2:34526567-34526586 Msa1244940:five_prime_UTR 45.0%
CCTAATCTGTTCTGTGGAAG+TGG - chr8_2:34526618-34526637 None:intergenic 45.0%
CCACTTCCACAGAACAGATT+AGG + chr8_2:34526615-34526634 Msa1244940:five_prime_UTR 45.0%
! ACTTTGTGTGGCGGAAGAAA+GGG - chr8_2:34526727-34526746 None:intergenic 45.0%
TTCGAGAAGGTGACTTTGTG+TGG - chr8_2:34526739-34526758 None:intergenic 45.0%
GTGAAGCAGAAGATTCGAGA+AGG - chr8_2:34526752-34526771 None:intergenic 45.0%
! CATCGTCACATTGGCCTAAT+TGG - chr8_2:34526781-34526800 None:intergenic 45.0%
CGTCACTTGGTATAACTCAG+AGG + chr8_2:34526804-34526823 Msa1244940:CDS 45.0%
ACGGTGGAAGCAATTAGGAT+TGG - chr8_2:34526857-34526876 None:intergenic 45.0%
ACTGAACGGTGGAAGCAATT+AGG - chr8_2:34526862-34526881 None:intergenic 45.0%
AGAAGACACGTAAGGAACCA+TGG - chr8_2:34526891-34526910 None:intergenic 45.0%
ATACAGAATCGCATTCGCAG+CGG - chr8_2:34526915-34526934 None:intergenic 45.0%
GAATGCGATTCTGTATTCGC+CGG + chr8_2:34526919-34526938 Msa1244940:CDS 45.0%
!! GTTCTAGGAACCTTTGTGTC+CGG - chr8_2:34526941-34526960 None:intergenic 45.0%
GACACAAAGGTTCCTAGAAC+TGG + chr8_2:34526941-34526960 Msa1244940:CDS 45.0%
AGAGCAACTTCACCAGTTCT+AGG - chr8_2:34526956-34526975 None:intergenic 45.0%
GAACTGGTGAAGTTGCTCTT+AGG + chr8_2:34526957-34526976 Msa1244940:CDS 45.0%
CCTGTATGGCCTTCATGTTA+GGG - chr8_2:34527000-34527019 None:intergenic 45.0%
ACCTGTATGGCCTTCATGTT+AGG - chr8_2:34527001-34527020 None:intergenic 45.0%
GAGATTACTAGGCTGAATCG+CGG - chr8_2:34527206-34527225 None:intergenic 45.0%
CTGTCACCGAAGAGATTACT+AGG - chr8_2:34527217-34527236 None:intergenic 45.0%
AACGTTCCAACAGTCCTGTA+TGG - chr8_2:34527297-34527316 None:intergenic 45.0%
ATACAGGACTGTTGGAACGT+TGG + chr8_2:34527296-34527315 Msa1244940:intron 45.0%
TTGGAACGTTGGTGTGAAGT+TGG + chr8_2:34527307-34527326 Msa1244940:intron 45.0%
CCATCATAAGTCCCATGACT+TGG - chr8_2:34527365-34527384 None:intergenic 45.0%
CCAAGTCATGGGACTTATGA+TGG + chr8_2:34527362-34527381 Msa1244940:intron 45.0%
AGTCATGGGACTTATGATGG+TGG + chr8_2:34527365-34527384 Msa1244940:intron 45.0%
GTCATGGGACTTATGATGGT+GGG + chr8_2:34527366-34527385 Msa1244940:intron 45.0%
!! GGACTTATGATGGTGGGATT+TGG + chr8_2:34527372-34527391 Msa1244940:intron 45.0%
!! ATTTGGTCCTCCGGATTAGT+CGG + chr8_2:34527389-34527408 Msa1244940:intron 45.0%
TATAAAGCACGGACACTCCT+GGG + chr8_2:34527554-34527573 Msa1244940:intron 45.0%
! GGGAGTAGCTAGTTTCTAAC+TGG + chr8_2:34527905-34527924 Msa1244940:intron 45.0%
ATCTGTTGAGGATTCCACAG+AGG + chr8_2:34528015-34528034 Msa1244940:CDS 45.0%
GTTCCATAAGGTTTCCTCTG+TGG - chr8_2:34528032-34528051 None:intergenic 45.0%
TTCCCCTCCATTGTTCCATA+AGG - chr8_2:34528044-34528063 None:intergenic 45.0%
AAGTATACCAGCGGAACTGA+AGG + chr8_2:34528766-34528785 Msa1244940:CDS 45.0%
ACTGAAGGAAAAGGCCTCTT+TGG + chr8_2:34528781-34528800 Msa1244940:CDS 45.0%
! GATATCAGCATTTTGCAGGG+GGG + chr8_2:34529243-34529262 Msa1244940:intron 45.0%
GGCAGAACTAGAGACATTAC+AGG + chr8_2:34529347-34529366 Msa1244940:CDS 45.0%
GATCTTGATATTGCGGCAAC+AGG + chr8_2:34529481-34529500 Msa1244940:intron 45.0%
GGCAACAGAAAAGATAGACC+AGG - chr8_2:34529509-34529528 None:intergenic 45.0%
! GGTCTATCTTTTCTGTTGCC+GGG + chr8_2:34529509-34529528 Msa1244940:CDS 45.0%
! GTCTATCTTTTCTGTTGCCG+GGG + chr8_2:34529510-34529529 Msa1244940:CDS 45.0%
GGCAATACACGGAATATCCA+CGG + chr8_2:34529531-34529550 Msa1244940:CDS 45.0%
! TTTTGTAGGCTTTCAGGGAG+AGG + chr8_2:34529765-34529784 Msa1244940:intron 45.0%
TTTCTCTCTTCTCCACCAAC+TGG - chr8_2:34529837-34529856 None:intergenic 45.0%
GAGAAAAACTGCCACCATTC+AGG + chr8_2:34529851-34529870 Msa1244940:CDS 45.0%
CGCAAACATTTCAGTCAGCT+AGG + chr8_2:34530646-34530665 Msa1244940:intron 45.0%
!! GGAAGTATGGTTTTCAGCTG+TGG + chr8_2:34530980-34530999 Msa1244940:intron 45.0%
GTTCAGCCTAACCCAAATGA+TGG - chr8_2:34531150-34531169 None:intergenic 45.0%
ATGCTCCATCCATCACCTAA+AGG - chr8_2:34531275-34531294 None:intergenic 45.0%
!! ACCACTGGTCTTATCTAGTC+CGG - chr8_2:34531333-34531352 None:intergenic 45.0%
CAAGGGAACATTGTAACCAC+TGG - chr8_2:34531348-34531367 None:intergenic 45.0%
CAGTGGTTACAATGTTCCCT+TGG + chr8_2:34531346-34531365 Msa1244940:intron 45.0%
! AAGGCTTTTAGCGGGGAAAT+AGG - chr8_2:34531655-34531674 None:intergenic 45.0%
! TCTTTTCCTCTGTTGTAGGC+CGG + chr8_2:34531826-34531845 Msa1244940:intron 45.0%
GGAGGGATATCATTTGAGGA+AGG + chr8_2:34531853-34531872 Msa1244940:CDS 45.0%
GAGAATATCTCTCCCTATGG+TGG - chr8_2:34532009-34532028 None:intergenic 45.0%
TTCTCCCCGAGATAAAAACC+GGG + chr8_2:34532024-34532043 Msa1244940:CDS 45.0%
! TATCCCCGGTTTTTATCTCG+GGG - chr8_2:34532031-34532050 None:intergenic 45.0%
CGTTCCGCAAAGCTTATTGA+AGG + chr8_2:34532056-34532075 Msa1244940:CDS 45.0%
CAACCTGCATCTGGAAAATC+AGG - chr8_2:34532217-34532236 None:intergenic 45.0%
!! AATAAAAAATATTACTAATT+AGG - chr8_2:34531807-34531826 None:intergenic 5.0%
GCGAGTGATCGGAATGTTGA+AGG - chr8_2:34526699-34526718 None:intergenic 50.0%
! GACTTTGTGTGGCGGAAGAA+AGG - chr8_2:34526728-34526747 None:intergenic 50.0%
GAGAAGGTGACTTTGTGTGG+CGG - chr8_2:34526736-34526755 None:intergenic 50.0%
GTGACGTGTCATCGTCACAT+TGG - chr8_2:34526790-34526809 None:intergenic 50.0%
TGTGACGATGACACGTCACT+TGG + chr8_2:34526791-34526810 Msa1244940:CDS 50.0%
CATGGAACTGAACTGAACGG+TGG - chr8_2:34526873-34526892 None:intergenic 50.0%
CACCGTTCAGTTCAGTTCCA+TGG + chr8_2:34526871-34526890 Msa1244940:CDS 50.0%
TACAGAATCGCATTCGCAGC+GGG - chr8_2:34526914-34526933 None:intergenic 50.0%
TCTGTATTCGCCGGACACAA+AGG + chr8_2:34526928-34526947 Msa1244940:CDS 50.0%
CCTTCATGTTAGGGCTTGCA+GGG - chr8_2:34526991-34527010 None:intergenic 50.0%
CCCTAACATGAAGGCCATAC+AGG + chr8_2:34526997-34527016 Msa1244940:CDS 50.0%
TGTGTTGGGTCAGTCCATAC+AGG + chr8_2:34527280-34527299 Msa1244940:intron 50.0%
GTCAGTCCATACAGGACTGT+TGG + chr8_2:34527288-34527307 Msa1244940:intron 50.0%
!! TCCTCCGGATTAGTCGGTAT+TGG + chr8_2:34527395-34527414 Msa1244940:intron 50.0%
!! CCTCCGGATTAGTCGGTATT+GGG + chr8_2:34527396-34527415 Msa1244940:intron 50.0%
! CGTCCCAATACCGACTAATC+CGG - chr8_2:34527402-34527421 None:intergenic 50.0%
!! CGGATTAGTCGGTATTGGGA+CGG + chr8_2:34527400-34527419 Msa1244940:intron 50.0%
CTATAAAGCACGGACACTCC+TGG + chr8_2:34527553-34527572 Msa1244940:intron 50.0%
ATGAAGCACGGATACGGACA+CGG - chr8_2:34527688-34527707 None:intergenic 50.0%
ACCAGCGGAACTGAAGGAAA+AGG + chr8_2:34528772-34528791 Msa1244940:CDS 50.0%
GGATATTCCGTGTATTGCCC+CGG - chr8_2:34529530-34529549 None:intergenic 50.0%
TTTGAAGGAGTCACTGACCG+TGG - chr8_2:34529551-34529570 None:intergenic 50.0%
! GGTTTTCAGCTGTGGAAGAC+TGG + chr8_2:34530988-34531007 Msa1244940:intron 50.0%
! ACCGGACTAGATAAGACCAG+TGG + chr8_2:34531329-34531348 Msa1244940:intron 50.0%
CCAGCGGGCATTATTTCCAA+GGG - chr8_2:34531365-34531384 None:intergenic 50.0%
TCCAGCGGGCATTATTTCCA+AGG - chr8_2:34531366-34531385 None:intergenic 50.0%
AAGGGGCTCAAATTGTCCAG+CGG - chr8_2:34531381-34531400 None:intergenic 50.0%
GGCTCATAACGAAGCTTCTG+AGG + chr8_2:34531565-34531584 Msa1244940:CDS 50.0%
GGGGAGAATATCTCTCCCTA+TGG - chr8_2:34532012-34532031 None:intergenic 50.0%
TCTCCCCGAGATAAAAACCG+GGG + chr8_2:34532025-34532044 Msa1244940:CDS 50.0%
TGCGGAACGAATGATATCCC+CGG - chr8_2:34532045-34532064 None:intergenic 50.0%
AACTTTCCTTCGGCAACACG+AGG - chr8_2:34532091-34532110 None:intergenic 50.0%
TGCTCCCTGAGCAGGTAAAA+AGG + chr8_2:34532134-34532153 Msa1244940:three_prime_UTR 50.0%
! CAGCCTGATTTTCCAGATGC+AGG + chr8_2:34532211-34532230 Msa1244940:three_prime_UTR 50.0%
AAAGGGACACGTGTACACCG+TGG - chr8_2:34526587-34526606 None:intergenic 55.0%
TGCGCGCCTAATCTGTTCTG+TGG - chr8_2:34526624-34526643 None:intergenic 55.0%
! AAAGGGTGGTGGCGAGTGAT+CGG - chr8_2:34526710-34526729 None:intergenic 55.0%
! TTGTGTGGCGGAAGAAAGGG+TGG - chr8_2:34526724-34526743 None:intergenic 55.0%
CCCTGCAAGCCCTAACATGA+AGG + chr8_2:34526988-34527007 Msa1244940:CDS 55.0%
GCCTTCATGTTAGGGCTTGC+AGG - chr8_2:34526992-34527011 None:intergenic 55.0%
GTGGTGAAGGCTTGAGACCT+AGG + chr8_2:34527082-34527101 Msa1244940:intron 55.0%
! CTTGTGAGGAGCACACTCCT+AGG - chr8_2:34527102-34527121 None:intergenic 55.0%
! CTAGGAGTGTGCTCCTCACA+AGG + chr8_2:34527100-34527119 Msa1244940:intron 55.0%
! AGGCTGAATCGCGGACTACT+AGG - chr8_2:34527197-34527216 None:intergenic 55.0%
!! GATGGTGGGATTTGGTCCTC+CGG + chr8_2:34527380-34527399 Msa1244940:intron 55.0%
! CCCAATACCGACTAATCCGG+AGG - chr8_2:34527399-34527418 None:intergenic 55.0%
! GCCTTTTCCTTCAGTTCCGC+TGG - chr8_2:34528776-34528795 None:intergenic 55.0%
ATATTGCGGCAACAGGCACC+TGG + chr8_2:34529488-34529507 Msa1244940:intron 55.0%
TCTGTTGCCGGGGCAATACA+CGG + chr8_2:34529520-34529539 Msa1244940:CDS 55.0%
CCCTTGGAAATAATGCCCGC+TGG + chr8_2:34531362-34531381 Msa1244940:intron 55.0%
AGGGGCTCAAATTGTCCAGC+GGG - chr8_2:34531380-34531399 None:intergenic 55.0%
! TGTTGTAGGCCGGCTTAGGA+GGG + chr8_2:34531836-34531855 Msa1244940:intron 55.0%
TTTCCTTCGGCAACACGAGG+CGG - chr8_2:34532088-34532107 None:intergenic 55.0%
TCTTACAGTGCTCCCTGAGC+AGG + chr8_2:34532126-34532145 Msa1244940:three_prime_UTR 55.0%
! TGTGGCGGAAGAAAGGGTGG+TGG - chr8_2:34526721-34526740 None:intergenic 60.0%
GCAGCGGGAGAAGACACGTA+AGG - chr8_2:34526899-34526918 None:intergenic 60.0%
GCACGGACACTCCTGGGATA+AGG + chr8_2:34527560-34527579 Msa1244940:intron 60.0%
TGTCGGTCACGCCTTATCCC+AGG - chr8_2:34527574-34527593 None:intergenic 60.0%
CCTAAGCCGGCCTACAACAG+AGG - chr8_2:34531835-34531854 None:intergenic 60.0%
! CCTCTGTTGTAGGCCGGCTT+AGG + chr8_2:34531832-34531851 Msa1244940:intron 60.0%
! CTGTTGTAGGCCGGCTTAGG+AGG + chr8_2:34531835-34531854 Msa1244940:intron 60.0%
TCGGCAACACGAGGCGGTCT+TGG - chr8_2:34532082-34532101 None:intergenic 65.0%
AGACCGCCTCGTGTTGCCGA+AGG + chr8_2:34532082-34532101 Msa1244940:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 34526555 34532375 34526555 ID=Msa1244940;Name=Msa1244940
chr8_2 mRNA 34526555 34532375 34526555 ID=Msa1244940-mRNA-1;Parent=Msa1244940;Name=Msa1244940-mRNA-1;_AED=0.12;_eAED=0.12;_QI=119|0.88|1|1|1|1|10|263|375
chr8_2 exon 34526555 34527018 34526555 ID=Msa1244940-mRNA-1:exon:10966;Parent=Msa1244940-mRNA-1
chr8_2 exon 34527993 34528082 34527993 ID=Msa1244940-mRNA-1:exon:10967;Parent=Msa1244940-mRNA-1
chr8_2 exon 34528734 34528829 34528734 ID=Msa1244940-mRNA-1:exon:10968;Parent=Msa1244940-mRNA-1
chr8_2 exon 34529261 34529368 34529261 ID=Msa1244940-mRNA-1:exon:10969;Parent=Msa1244940-mRNA-1
chr8_2 exon 34529503 34529552 34529503 ID=Msa1244940-mRNA-1:exon:10970;Parent=Msa1244940-mRNA-1
chr8_2 exon 34529773 34529872 34529773 ID=Msa1244940-mRNA-1:exon:10971;Parent=Msa1244940-mRNA-1
chr8_2 exon 34530346 34530399 34530346 ID=Msa1244940-mRNA-1:exon:10972;Parent=Msa1244940-mRNA-1
chr8_2 exon 34531515 34531637 34531515 ID=Msa1244940-mRNA-1:exon:10973;Parent=Msa1244940-mRNA-1
chr8_2 exon 34531844 34531893 34531844 ID=Msa1244940-mRNA-1:exon:10974;Parent=Msa1244940-mRNA-1
chr8_2 exon 34532001 34532375 34532001 ID=Msa1244940-mRNA-1:exon:10975;Parent=Msa1244940-mRNA-1
chr8_2 five_prime_UTR 34526555 34526673 34526555 ID=Msa1244940-mRNA-1:five_prime_utr;Parent=Msa1244940-mRNA-1
chr8_2 CDS 34526674 34527018 34526674 ID=Msa1244940-mRNA-1:cds;Parent=Msa1244940-mRNA-1
chr8_2 CDS 34527993 34528082 34527993 ID=Msa1244940-mRNA-1:cds;Parent=Msa1244940-mRNA-1
chr8_2 CDS 34528734 34528829 34528734 ID=Msa1244940-mRNA-1:cds;Parent=Msa1244940-mRNA-1
chr8_2 CDS 34529261 34529368 34529261 ID=Msa1244940-mRNA-1:cds;Parent=Msa1244940-mRNA-1
chr8_2 CDS 34529503 34529552 34529503 ID=Msa1244940-mRNA-1:cds;Parent=Msa1244940-mRNA-1
chr8_2 CDS 34529773 34529872 34529773 ID=Msa1244940-mRNA-1:cds;Parent=Msa1244940-mRNA-1
chr8_2 CDS 34530346 34530399 34530346 ID=Msa1244940-mRNA-1:cds;Parent=Msa1244940-mRNA-1
chr8_2 CDS 34531515 34531637 34531515 ID=Msa1244940-mRNA-1:cds;Parent=Msa1244940-mRNA-1
chr8_2 CDS 34531844 34531893 34531844 ID=Msa1244940-mRNA-1:cds;Parent=Msa1244940-mRNA-1
chr8_2 CDS 34532001 34532112 34532001 ID=Msa1244940-mRNA-1:cds;Parent=Msa1244940-mRNA-1
chr8_2 three_prime_UTR 34532113 34532375 34532113 ID=Msa1244940-mRNA-1:three_prime_utr;Parent=Msa1244940-mRNA-1
Gene Sequence

>Msa1244940

ATGGCGTATCCTCTCTCTTCTTCCTTCAACATTCCGATCACTCGCCACCACCCTTTCTTCCGCCACACAAAGTCACCTTCTCGAATCTTCTGCTTCACAAAGAGCCAATTAGGCCAATGTGACGATGACACGTCACTTGGTATAACTCAGAGGATAATGAAGCAATTGAAGAGTGTGATTCCAATCCTAATTGCTTCCACCGTTCAGTTCAGTTCCATGGTTCCTTACGTGTCTTCTCCCGCTGCGAATGCGATTCTGTATTCGCCGGACACAAAGGTTCCTAGAACTGGTGAAGTTGCTCTTAGGAGAGCTATCCCTGCAAGCCCTAACATGAAGGCCATACAGGAGACTCTTGAAGATATTTCGTATCTGTTGAGGATTCCACAGAGGAAACCTTATGGAACAATGGAGGGGAACGTAAAGAAAGTTTTGAAGATAGCGGTAGATGAAAAGGATTCTATATTGGCAAGTATACCAGCGGAACTGAAGGAAAAGGCCTCTTTGGTGCATTCAACTTTAATAGATGGGAAGGGGGGTTTGCAAGTTCTCCTTCAATCCATAAAGGAACAGGATGCAGATAAAGTATCTGTGAACCTTCAATCTACACTGGATATTGTGGCAGAACTAGAGACATTACAGGCACCTGGTCTATCTTTTCTGTTGCCGGGGCAATACACGGAATATCCACGGCTTTCAGGGAGAGGAACTGTTGAGTTTGTCATTGAGAAAGGAGACGGTTCAACATTTTCTCCAGTTGGTGGAGAAGAGAGAAAAACTGCCACCATTCAGGTTGTTTTAGATGGATATTCAGCTCCTTTAACTGCAGGGAATTTTGCAAAACTGGATGGGGAACTGCCAGTTCTGCCTCTATCTGTTTATGGAGCAGTTGCTATGGCTCATAACGAAGCTTCTGAGGAGTATTCATCACCTTATCAATTTTTCTTCTATCTCTATGATAAAAGAAATGCCGGCTTAGGAGGGATATCATTTGAGGAAGGGCAATTTTCAGTTTTTGGATATACCACCATAGGGAGAGATATTCTCCCCGAGATAAAAACCGGGGATATCATTCGTTCCGCAAAGCTTATTGAAGGCCAAGACCGCCTCGTGTTGCCGAAGGAAAGTTGA

Protein sequence

>Msa1244940

MAYPLSSSFNIPITRHHPFFRHTKSPSRIFCFTKSQLGQCDDDTSLGITQRIMKQLKSVIPILIASTVQFSSMVPYVSSPAANAILYSPDTKVPRTGEVALRRAIPASPNMKAIQETLEDISYLLRIPQRKPYGTMEGNVKKVLKIAVDEKDSILASIPAELKEKASLVHSTLIDGKGGLQVLLQSIKEQDADKVSVNLQSTLDIVAELETLQAPGLSFLLPGQYTEYPRLSGRGTVEFVIEKGDGSTFSPVGGEERKTATIQVVLDGYSAPLTAGNFAKLDGELPVLPLSVYGAVAMAHNEASEEYSSPYQFFFYLYDKRNAGLGGISFEEGQFSVFGYTTIGRDILPEIKTGDIIRSAKLIEGQDRLVLPKES*