AlfalfaGEDB | Msa0474290

M. sativa cultivar zhongmu-4 / Msa0474290

KEGG: K01772
GO: GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016829 GO:0018130 GO:0019438 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042168 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055035 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00762.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0474290	XP_013461618.1	91.312	564	13	1	1	564	1	528	0.0	993

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0474290	sp\|A2Y3Q5\|HEMH_ORYSI	75.262	477	80	2	85	559	82	522	0.0	706

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0474290	A0A072V2Q7	91.312	564	13	1	1	564	1	528	0.0	993

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0474290	0.837736	4.360029e-57	-8.615850e-47
Msa0000610	Msa0474290	0.814736	1.323600e-51	-8.615850e-47
Msa0000800	Msa0474290	-0.827950	1.178284e-54	-8.615850e-47
Msa0001040	Msa0474290	0.802728	4.887794e-49	-8.615850e-47
Msa0001420	Msa0474290	0.836773	7.687454e-57	-8.615850e-47
Msa0001510	Msa0474290	0.892882	1.053522e-74	-8.615850e-47
Msa0001540	Msa0474290	0.857811	1.265600e-62	-8.615850e-47
Msa0002060	Msa0474290	0.800474	1.417264e-48	-8.615850e-47
Msa0002110	Msa0474290	0.839143	1.890000e-57	-8.615850e-47
Msa0002690	Msa0474290	0.907011	8.028677e-81	-8.615850e-47

Showing 1 to 10 of 2,990 entries

Previous1 2 3 4 5…299Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0474290	MtrunA17_Chr3g0131031	91.312	564	13	1	1	564	1	528	0.0	993
Msa0474290	MtrunA17_Chr8g0385271	77.577	553	83	2	12	559	7	523	0.0	855
Msa0474290	MtrunA17_Chr3g0135611	66.048	377	92	1	104	480	85	425	1.12e-173	499
Msa0474290	MtrunA17_Chr4g0008821	58.891	433	136	3	48	480	38	428	7.14e-173	498
Msa0474290	MtrunA17_Chr4g0045871	89.706	68	7	0	443	510	5	72	1.47e-34	125
Msa0474290	MtrunA17_Chr7g0235891	65.217	46	16	0	429	474	88	133	8.63e-12	63.2

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0474290	AT2G30390.1	73.684	494	81	4	82	563	56	512	704
Msa0474290	AT2G30390.2	72.222	504	81	5	82	563	56	522	695
Msa0474290	AT5G26030.1	65.684	373	92	1	109	481	84	420	518
Msa0474290	AT5G26030.2	65.684	373	92	1	109	481	84	420	518

Showing 1 to 4 of 4 entries

Previous1Next

Find 143 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGTGAAAAGTATGT+TGG	0.492369	3_3:-77136113	Msa0474290:CDS
AAAAGTACACTACCTCTTTA+GGG	0.385426	3_3:+77136948	None:intergenic
AAAAGTGCTGAAACTTGGAA+TGG	0.570829	3_3:-77135390	Msa0474290:CDS
AAAATTTCAATATTGTGCAA+GGG	0.574118	3_3:+77135162	None:intergenic
AAAGAATTGGCTCTAGAATC+TGG	0.400419	3_3:-77135914	Msa0474290:CDS
AAAGGATGGAGTTACAAAGC+TGG	0.574958	3_3:-77137538	Msa0474290:CDS
AAATAGGGAGTTGCCATCGC+CGG	0.581354	3_3:-77135439	Msa0474290:CDS
AACCAAAGGTCGAAAAGCAA+AGG	0.577475	3_3:-77141407	Msa0474290:five_prime_UTR
AACCATGCTCTCAAAGACAG+TGG	0.641416	3_3:-77135255	Msa0474290:three_prime_UTR
AACTAATGTATTTACCTAAT+TGG	0.166560	3_3:+77136085	None:intergenic

Showing 1 to 10 of 143 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTACTGTACTACAATTAGTA+TGG	+	chr3_3:77135172-77135191	None:intergenic	30.0%
ATCACCTTAAAATTCACTTC+TGG	-	chr3_3:77135216-77135235	Msa0474290:three_prime_UTR	30.0%
TCACCTTAAAATTCACTTCT+GGG	-	chr3_3:77135217-77135236	Msa0474290:three_prime_UTR	30.0%
CATTGTAAATGGAAGACTTA+CGG	+	chr3_3:77135419-77135438	None:intergenic	30.0%
TGAGAAAACAGCTTATAACA+TGG	+	chr3_3:77135544-77135563	None:intergenic	30.0%
AAAAGATTAAGGACCAAGTT+TGG	+	chr3_3:77135608-77135627	None:intergenic	30.0%
GTTGGATTCCAAAAAGATTA+AGG	+	chr3_3:77135619-77135638	None:intergenic	30.0%
TTAGGATACAATACTGAGTA+TGG	-	chr3_3:77136230-77136249	Msa0474290:intron	30.0%
CTAAATGTGTGAAAAGAAAC+CGG	+	chr3_3:77136330-77136349	None:intergenic	30.0%
ATTCTCTGATATTTCAGCAA+TGG	-	chr3_3:77136351-77136370	Msa0474290:intron	30.0%

Showing 1 to 10 of 418 entries

Previous1 2 3 4 5…42Next

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	77135003	77141459	77135003	ID=Msa0474290;Name=Msa0474290
chr3_3	mRNA	77135003	77141459	77135003	ID=Msa0474290-mRNA-1;Parent=Msa0474290;Name=Msa0474290-mRNA-1;_AED=0.15;_eAED=0.15;_QI=183\|1\|0.92\|1\|0.83\|0.76\|13\|284\|564
chr3_3	exon	77135003	77135514	77135003	ID=Msa0474290-mRNA-1:exon:20547;Parent=Msa0474290-mRNA-1
chr3_3	exon	77135784	77135985	77135784	ID=Msa0474290-mRNA-1:exon:20546;Parent=Msa0474290-mRNA-1
chr3_3	exon	77136100	77136200	77136100	ID=Msa0474290-mRNA-1:exon:20545;Parent=Msa0474290-mRNA-1
chr3_3	exon	77136353	77136505	77136353	ID=Msa0474290-mRNA-1:exon:20544;Parent=Msa0474290-mRNA-1
chr3_3	exon	77136628	77136735	77136628	ID=Msa0474290-mRNA-1:exon:20543;Parent=Msa0474290-mRNA-1
chr3_3	exon	77136961	77137087	77136961	ID=Msa0474290-mRNA-1:exon:20542;Parent=Msa0474290-mRNA-1
chr3_3	exon	77137462	77137565	77137462	ID=Msa0474290-mRNA-1:exon:20541;Parent=Msa0474290-mRNA-1
chr3_3	exon	77137816	77137917	77137816	ID=Msa0474290-mRNA-1:exon:20540;Parent=Msa0474290-mRNA-1
chr3_3	exon	77138869	77139012	77138869	ID=Msa0474290-mRNA-1:exon:20539;Parent=Msa0474290-mRNA-1
chr3_3	exon	77139331	77139658	77139331	ID=Msa0474290-mRNA-1:exon:20538;Parent=Msa0474290-mRNA-1
chr3_3	exon	77141045	77141163	77141045	ID=Msa0474290-mRNA-1:exon:20537;Parent=Msa0474290-mRNA-1
chr3_3	exon	77141261	77141367	77141261	ID=Msa0474290-mRNA-1:exon:20536;Parent=Msa0474290-mRNA-1
chr3_3	exon	77141405	77141459	77141405	ID=Msa0474290-mRNA-1:exon:20535;Parent=Msa0474290-mRNA-1
chr3_3	five_prime_UTR	77141405	77141459	77141405	ID=Msa0474290-mRNA-1:five_prime_utr;Parent=Msa0474290-mRNA-1
chr3_3	five_prime_UTR	77141261	77141367	77141261	ID=Msa0474290-mRNA-1:five_prime_utr;Parent=Msa0474290-mRNA-1
chr3_3	five_prime_UTR	77141143	77141163	77141143	ID=Msa0474290-mRNA-1:five_prime_utr;Parent=Msa0474290-mRNA-1
chr3_3	CDS	77141045	77141142	77141045	ID=Msa0474290-mRNA-1:cds;Parent=Msa0474290-mRNA-1
chr3_3	CDS	77139331	77139658	77139331	ID=Msa0474290-mRNA-1:cds;Parent=Msa0474290-mRNA-1
chr3_3	CDS	77138869	77139012	77138869	ID=Msa0474290-mRNA-1:cds;Parent=Msa0474290-mRNA-1
chr3_3	CDS	77137816	77137917	77137816	ID=Msa0474290-mRNA-1:cds;Parent=Msa0474290-mRNA-1
chr3_3	CDS	77137462	77137565	77137462	ID=Msa0474290-mRNA-1:cds;Parent=Msa0474290-mRNA-1
chr3_3	CDS	77136961	77137087	77136961	ID=Msa0474290-mRNA-1:cds;Parent=Msa0474290-mRNA-1
chr3_3	CDS	77136628	77136735	77136628	ID=Msa0474290-mRNA-1:cds;Parent=Msa0474290-mRNA-1
chr3_3	CDS	77136353	77136505	77136353	ID=Msa0474290-mRNA-1:cds;Parent=Msa0474290-mRNA-1
chr3_3	CDS	77136100	77136200	77136100	ID=Msa0474290-mRNA-1:cds;Parent=Msa0474290-mRNA-1
chr3_3	CDS	77135784	77135985	77135784	ID=Msa0474290-mRNA-1:cds;Parent=Msa0474290-mRNA-1
chr3_3	CDS	77135287	77135514	77135287	ID=Msa0474290-mRNA-1:cds;Parent=Msa0474290-mRNA-1
chr3_3	three_prime_UTR	77135003	77135286	77135003	ID=Msa0474290-mRNA-1:three_prime_utr;Parent=Msa0474290-mRNA-1

Gene Sequence

>Msa0474290

ATGAAGCTTCAAACTCCAACTCATGCCACGTTATCACCTTCTACTTCTTCCGCCTCCCATACACTCAACAACGCTTCTCCTAATTTCAAGCGTCCTCCGCTGTCGCCACAGGCAATCTGTACCTCTCAGAAAAAGTCCTTCTGCTCTGGAGCTCATGTGGAGGCTTCTGTTAACTCTAATCCTGTGAAAAATTACATAGCAGCCAGTTTTTCTTCACTGCGATCTGAAGCAAAACCCTTGGTTTCCAACCAATCACTCAAAAAGCACATGTTTTCAGTGGGAGCTTTAGTAGCTCGAACAGATCAGGATGTTTCTGATGCAACTCTTACATCTGATGATAAGATTGGAGTGTTATTGCTAAACCTTGGAGGTCCAGAGACTCTAGAAGATGTGCAACCTTTTTTATTTAACCTTTTTGCAGACCCGGATATTATACGATTGCCAAGAATATTTAGTTTTCTTCAAAAGCCATTGGCCCAGTTTGTATCTGTTCTAAGGGCCCCAAAGAGCAGAGAAGGCTACGCTTCAATTGGTGGTGGTTCTCCTCTTAGACGTATAACTGATGCACAGGCTGAAGACTTGAAGAAATCTCTTTCGGAAAAGAATGTCCCTGCTGAAGTGTACGTTGGCATGCGTTACTGGCATCCATTCACTGAGGAAGCTATTGAACAGATTAAAAAGGATGGAGTTACAAAGCTGGTCGTTCTCCCACTTTATCCACAATTTTCAATATCAACCAGTGGCTCAAGCTTACGTCTACTGGAGAGTATATTCCGAGAGGATGAGTATCTAGTCAACATGCAGCACACAGTATTACCTTCATGGTATCAACGTGAAGGATACATAAAGGCCATGTCAAATTTAATTGAAAAAGAACTGAAGAGTTTTGACTGCCCTAAAGAGGTCATGATATTTTTTAGTGCACATGGGGTGCCTCTTGCTTATGTGGAAGAGGCCGGTGATCCTTACAAGGCAGAGATGGAAAAATGTGTTGTTTTTGTTGAGATTCATGTCATGATATTTTTTAGTGCACATGGGGTGCCTCTTGCTTATGTGGAAGAGGCCGGTGATCCTTACAAGGCAGAGATGGAGGAATGTGTGGATTTGATCATGGAAGAGCTTGAGACAAGAAAGATAAGAAATCCCTTCACCCTTGCCTATCAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTATACAGATGAGACAATAGTTGAACTTGGAAAAAAAGGAGTGAAAAGTATGTTGGCTGTTCCAATTAGCTTTGTCAGTGAACATATTGAAACTCTAGAAGAAATTGATGTTGAATACAAAGAATTGGCTCTAGAATCTGGTATAGAAAATTGGGGCCGTGTTCCTGCTCTAGGATGTGAACCCTCCTTCATTTCTGATTTGGCAGATGCTGTTATTGAAAGTCTCCCATATGCTGGTGCCATGGCAGTTTCAAGCCTCGAAGCTCGACAGTCTTTGGTTCCGCTCGGAAGTGTACAAGAGTTATTGGCAGCATATGACTCGCAAAATAGGGAGTTGCCATCGCCGGTGATAGTGTGGGAATGGGGTTTGACAAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGTTAGCTGTGCTGCTTCTTTTGTTTTTTGAAGTCACGACACCTGATAGTATTTTTCACCAATGGGGAATATTATCGCCCTCTCTTAGGTGA

Protein sequence

>Msa0474290

MKLQTPTHATLSPSTSSASHTLNNASPNFKRPPLSPQAICTSQKKSFCSGAHVEASVNSNPVKNYIAASFSSLRSEAKPLVSNQSLKKHMFSVGALVARTDQDVSDATLTSDDKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRIFSFLQKPLAQFVSVLRAPKSREGYASIGGGSPLRRITDAQAEDLKKSLSEKNVPAEVYVGMRYWHPFTEEAIEQIKKDGVTKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVLPSWYQREGYIKAMSNLIEKELKSFDCPKEVMIFFSAHGVPLAYVEEAGDPYKAEMEKCVVFVEIHVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELETRKIRNPFTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSMLAVPISFVSEHIETLEEIDVEYKELALESGIENWGRVPALGCEPSFISDLADAVIESLPYAGAMAVSSLEARQSLVPLGSVQELLAAYDSQNRELPSPVIVWEWGLTKSAETWNGRAAMLAVLLLLFFEVTTPDSIFHQWGILSPSLR*