AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0044700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044700 MtrunA17_Chr1g0211871 94.536 183 7 2 1 182 1 181 8.95e-116 326
Msa0044700 MtrunA17_Chr2g0317731 34.965 143 85 2 37 176 36 173 3.81e-26 98.2
Msa0044700 MtrunA17_Chr3g0125821 38.739 111 56 3 71 174 70 175 1.65e-24 94.0
Msa0044700 MtrunA17_Chr1g0201781 39.000 100 59 1 77 176 68 165 9.46e-24 92.0
Msa0044700 MtrunA17_Chr4g0044731 45.122 82 45 0 72 153 66 147 2.19e-23 91.3
Msa0044700 MtrunA17_Chr8g0360031 35.780 109 62 2 71 176 73 176 2.70e-21 85.9
Msa0044700 MtrunA17_Chr7g0216481 38.824 85 48 2 86 167 47 130 2.42e-17 74.3
Msa0044700 MtrunA17_Chr2g0317721 37.209 86 54 0 68 153 38 123 1.01e-15 70.5
Msa0044700 MtrunA17_Chr2g0317711 38.372 86 53 0 68 153 38 123 4.37e-15 68.6
Msa0044700 MtrunA17_Chr1g0155721 36.449 107 53 5 77 174 15 115 2.06e-14 66.2
Msa0044700 MtrunA17_Chr5g0438731 34.884 129 77 4 53 177 45 170 3.28e-14 69.7
Msa0044700 MtrunA17_Chr5g0438731 32.353 102 65 1 73 170 194 295 5.09e-14 69.3
Msa0044700 MtrunA17_Chr1g0194961 39.535 86 46 2 79 158 157 242 1.15e-13 67.8
Msa0044700 MtrunA17_Chr1g0164481 32.632 95 62 1 81 173 84 178 1.84e-13 65.5
Msa0044700 MtrunA17_Chr2g0287471 33.884 121 75 2 53 170 14 132 1.98e-13 67.4
Msa0044700 MtrunA17_Chr3g0142051 37.209 86 47 3 86 165 27 111 6.11e-13 62.4
Msa0044700 MtrunA17_Chr2g0317701 34.375 96 62 1 59 153 34 129 1.85e-12 62.0
Msa0044700 MtrunA17_Chr8g0393201 35.294 85 53 2 70 153 231 314 2.55e-11 61.2
Msa0044700 MtrunA17_Chr5g0404831 31.343 67 45 1 85 151 28 93 2.79e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044700 AT1G50320.1 54.211 190 71 5 1 182 1 182 1.04e-62 192
Msa0044700 AT1G76760.1 41.414 99 56 1 79 177 73 169 1.51e-25 97.1
Msa0044700 AT1G43560.1 39.394 99 58 1 79 177 68 164 2.16e-22 89.0
Msa0044700 AT1G03680.1 36.364 110 62 2 70 176 75 179 5.16e-22 88.2
Msa0044700 AT2G15570.1 41.463 82 48 0 72 153 69 150 1.01e-20 84.7
Msa0044700 AT2G15570.2 41.463 82 48 0 72 153 70 151 1.03e-20 84.7
Msa0044700 AT3G15360.1 39.759 83 50 0 71 153 88 170 1.47e-20 84.7
Msa0044700 AT4G03520.1 35.780 109 62 2 71 176 82 185 7.75e-20 82.8
Msa0044700 AT1G04980.1 36.937 111 66 2 71 178 34 143 9.07e-16 74.7
Msa0044700 AT1G04980.1 31.373 102 66 1 73 170 171 272 6.69e-12 63.5
Msa0044700 AT5G39950.1 37.209 86 49 3 78 160 39 122 1.28e-15 70.1
Msa0044700 AT2G32920.1 35.922 103 63 1 71 170 32 134 3.05e-15 73.2
Msa0044700 AT5G60640.3 40.000 100 55 3 74 169 108 206 9.99e-14 68.9
Msa0044700 AT5G60640.1 40.000 100 55 3 74 169 108 206 1.45e-13 68.6
Msa0044700 AT5G60640.2 40.000 100 55 3 74 169 108 206 1.90e-13 68.2
Msa0044700 AT2G47470.1 39.773 88 47 2 77 158 149 236 1.93e-13 67.8
Msa0044700 AT2G47470.4 39.773 88 47 2 77 158 149 236 2.08e-13 67.4
Msa0044700 AT2G47470.2 39.773 88 47 2 77 158 149 236 2.27e-13 66.6
Msa0044700 AT2G47470.3 39.773 88 47 2 77 158 149 236 2.27e-13 67.4
Msa0044700 AT1G77510.1 36.538 104 55 5 74 167 34 136 5.77e-13 66.6
Msa0044700 AT3G06730.1 34.737 95 59 2 71 163 77 170 8.63e-13 63.9
Msa0044700 AT5G42980.1 38.235 68 41 1 85 152 25 91 1.09e-12 62.0
Msa0044700 AT1G69880.1 35.714 84 52 2 71 153 42 124 2.79e-11 59.3
Msa0044700 AT1G19730.1 29.412 85 57 1 85 166 26 110 2.90e-11 58.5
Msa0044700 AT3G54960.2 36.905 84 49 2 90 169 119 202 5.35e-11 60.8
Msa0044700 AT1G45145.1 29.070 86 59 2 66 151 7 90 5.95e-11 57.4

Find 67 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAAGAGTATAAAGTTTA+TGG 0.088645 1_1:-76344484 Msa0044700:CDS
ACAACATTTGGATGCTTTAT+TGG 0.139367 1_1:-76344377 Msa0044700:CDS
TGTGACCACAAAATAATATT+AGG 0.169933 1_1:-76346523 Msa0044700:five_prime_UTR
AAATCGGTCTGATCTGTTTA+TGG 0.190640 1_1:-76344124 Msa0044700:three_prime_UTR
CCCCGTTCTTGAAGAGTATC+AGG 0.263376 1_1:+76344452 None:intergenic
GTGACCACAAAATAATATTA+GGG 0.277302 1_1:-76346522 Msa0044700:five_prime_UTR
GCACCTTCCTTCCTGCTTCC+TGG 0.279114 1_1:+76344421 None:intergenic
GGTGAAACTTAAACAACATT+TGG 0.344190 1_1:-76344389 Msa0044700:CDS
CCCTGATACTCTTCAAGAAC+GGG 0.388833 1_1:-76344453 Msa0044700:CDS
TCAATACGGTTTCCTTGAAC+TGG 0.391435 1_1:+76346161 None:intergenic
ATTGATATGCTAAATGAAAC+AGG 0.402924 1_1:+76344272 None:intergenic
TCTATATTTCCTACTTCCAT+TGG 0.406104 1_1:-76346434 Msa0044700:five_prime_UTR
AAGAACGGGGAGGAATTTCC+AGG 0.409346 1_1:-76344439 Msa0044700:CDS
GTACAATTTCAAATTAAAAT+CGG 0.426994 1_1:-76344140 Msa0044700:three_prime_UTR
TCTAACTCTCCCAACCGTTC+CGG 0.449468 1_1:-76346356 Msa0044700:CDS
CCGTTTGATCACTCCAGCTA+TGG 0.459141 1_1:-76346086 Msa0044700:CDS
TAGTTGAATTCGTTGCTACT+TGG 0.466999 1_1:-76346120 Msa0044700:CDS
ATTGTACGAACCGGAACGGT+TGG 0.469903 1_1:+76346346 None:intergenic
TTGTACGAACCGGAACGGTT+GGG 0.477965 1_1:+76346347 None:intergenic
TGAGCTATGGATTCCATAGC+TGG 0.482178 1_1:+76346073 None:intergenic
AGAAAGAGGTACCTGAGCTA+TGG 0.486986 1_1:+76346060 None:intergenic
GCAACGAATTCAACTAAAAC+CGG 0.491722 1_1:+76346127 None:intergenic
GTTGAGGTCACCGTATCCAT+TGG 0.493134 1_1:+76346394 None:intergenic
CGTATTGAAATCTGAGCGTC+CGG 0.497098 1_1:-76346146 Msa0044700:CDS
ATTTCCTACTTCCATTGGCT+CGG 0.498895 1_1:-76346429 Msa0044700:five_prime_UTR
TAAGGGAAGAGATGAGGATA+CGG 0.499243 1_1:+76346309 None:intergenic
TGACCGGTGAGAACGTGGTA+AGG 0.505991 1_1:+76346291 None:intergenic
AGAGTCTTTGCCGAGTTGAC+CGG 0.508220 1_1:+76346275 None:intergenic
TATACTCTTCAATTAGCTGC+GGG 0.511786 1_1:+76344494 None:intergenic
GGGAGGAATTTCCAGGAAGC+AGG 0.512537 1_1:-76344432 Msa0044700:CDS
CCGCAACTCACTGTAAACTT+AGG 0.512897 1_1:+76346205 None:intergenic
AATCAATGAAAGCCAGTTCA+AGG 0.512971 1_1:-76346173 Msa0044700:CDS
TTCCCTTACCACGTTCTCAC+CGG 0.519028 1_1:-76346294 Msa0044700:CDS
AAATATAGATAGATAGATAA+CGG 0.520300 1_1:+76346448 None:intergenic
TACAGTGAGTTGCGGTATCA+CGG 0.521048 1_1:-76346197 Msa0044700:CDS
AGCTATGGAATCCATAGCTC+AGG 0.524162 1_1:-76346071 Msa0044700:intron
CACGTTCTCACCGGTCAACT+CGG 0.532357 1_1:-76346285 Msa0044700:CDS
TGAGGATACGGAGATTGAAG+AGG 0.544293 1_1:+76346321 None:intergenic
CGGACGCTCAGATTTCAATA+CGG 0.547344 1_1:+76346147 None:intergenic
CCATAGCTGGAGTGATCAAA+CGG 0.549337 1_1:+76346086 None:intergenic
GAAGAGGTAATTGTACGAAC+CGG 0.550130 1_1:+76346337 None:intergenic
TTTCAATGAAGCCGAGCCAA+TGG 0.567349 1_1:+76346418 None:intergenic
CCTAAGTTTACAGTGAGTTG+CGG 0.570949 1_1:-76346205 Msa0044700:CDS
TCATTGAAATCCAATGGATA+CGG 0.572041 1_1:-76346404 Msa0044700:exon
ACGTGGTAAGGGAAGAGATG+AGG 0.572348 1_1:+76346303 None:intergenic
ACCCTGATACTCTTCAAGAA+CGG 0.577296 1_1:-76344454 Msa0044700:CDS
TTCTTGAAGAGTATCAGGGT+TGG 0.579923 1_1:+76344457 None:intergenic
CCCGTTCTTGAAGAGTATCA+GGG 0.580271 1_1:+76344453 None:intergenic
CACTTTCGAATATACGAGGA+TGG 0.584087 1_1:+76346484 None:intergenic
TTTCCAGGAAGCAGGAAGGA+AGG 0.591083 1_1:-76344424 Msa0044700:CDS
GAAGCCGAGCCAATGGAAGT+AGG 0.593900 1_1:+76346425 None:intergenic
GACCGGTGAGAACGTGGTAA+GGG 0.599839 1_1:+76346292 None:intergenic
TCGGCTTCATTGAAATCCAA+TGG 0.601026 1_1:-76346410 Msa0044700:exon
GTATATATTATACACTTCAA+AGG 0.602656 1_1:+76344167 None:intergenic
CGAGTTGACCGGTGAGAACG+TGG 0.605237 1_1:+76346286 None:intergenic
GAATTCGTTGCTACTTGGTG+CGG 0.606167 1_1:-76346115 Msa0044700:CDS
TTATACTCTTCAATTAGCTG+CGG 0.611346 1_1:+76344493 None:intergenic
TGACCACAAAATAATATTAG+GGG 0.621577 1_1:-76346521 Msa0044700:five_prime_UTR
AGTGAGCGAAGCTGAAGTTG+AGG 0.632954 1_1:+76346378 None:intergenic
GGAATTTCCAGGAAGCAGGA+AGG 0.646284 1_1:-76344428 Msa0044700:CDS
GACCACAAAATAATATTAGG+GGG 0.659370 1_1:-76346520 Msa0044700:five_prime_UTR
GGTAATTGTACGAACCGGAA+CGG 0.669877 1_1:+76346342 None:intergenic
GAAGGAAGGTGCAATTACAA+AGG 0.680704 1_1:-76344410 Msa0044700:CDS
GCTGGAGTGATCAAACGGCA+AGG 0.683277 1_1:+76346091 None:intergenic
CCTGATACTCTTCAAGAACG+GGG 0.694186 1_1:-76344452 Msa0044700:CDS
TGATCACTTTCGAATATACG+AGG 0.718954 1_1:+76346480 None:intergenic
GATACTCTTCAAGAACGGGG+AGG 0.730377 1_1:-76344449 Msa0044700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAGATAGATAGATAA+CGG + chr1_1:76344099-76344118 None:intergenic 15.0%
!!! CTTCAATTTTATTAAGAAAA+AGG - chr1_1:76345500-76345519 Msa0044700:intron 15.0%
!! AAATTAATAGATAGTTATTG+AGG - chr1_1:76345804-76345823 Msa0044700:intron 15.0%
!! GTACAATTTCAAATTAAAAT+CGG - chr1_1:76346404-76346423 Msa0044700:exon 15.0%
!!! ACTTTTTATTTTGTTTTTGC+CGG - chr1_1:76344516-76344535 Msa0044700:CDS 20.0%
!!! ACCTCTAAAATCATTTATAT+TGG - chr1_1:76344703-76344722 Msa0044700:intron 20.0%
!!! CCTCTAAAATCATTTATATT+GGG - chr1_1:76344704-76344723 Msa0044700:intron 20.0%
!! TTTCAAATTATTAGTTGTGT+CGG - chr1_1:76345162-76345181 Msa0044700:intron 20.0%
!!! ATTGAAGAGTATAAAGTTTA+TGG - chr1_1:76346060-76346079 Msa0044700:intron 20.0%
!! GTATATATTATACACTTCAA+AGG + chr1_1:76346380-76346399 None:intergenic 20.0%
! TGTGACCACAAAATAATATT+AGG - chr1_1:76344021-76344040 Msa0044700:three_prime_UTR 25.0%
! GTGACCACAAAATAATATTA+GGG - chr1_1:76344022-76344041 Msa0044700:three_prime_UTR 25.0%
! TGACCACAAAATAATATTAG+GGG - chr1_1:76344023-76344042 Msa0044700:three_prime_UTR 25.0%
!!! CTTTTTTTAAACTCAGTATC+CGG + chr1_1:76344538-76344557 None:intergenic 25.0%
!! CCCAATATAAATGATTTTAG+AGG + chr1_1:76344707-76344726 None:intergenic 25.0%
!! ACAATGTAAATTTTTGTGTG+TGG - chr1_1:76344819-76344838 Msa0044700:intron 25.0%
!! CAATGTAAATTTTTGTGTGT+GGG - chr1_1:76344820-76344839 Msa0044700:intron 25.0%
!! AATGTAAATTTTTGTGTGTG+GGG - chr1_1:76344821-76344840 Msa0044700:intron 25.0%
! TGAAAATTATGTGATCTTTC+AGG - chr1_1:76344948-76344967 Msa0044700:intron 25.0%
! TTAAATCAGACCATCAATTT+GGG + chr1_1:76345550-76345569 None:intergenic 25.0%
!!! GTTAGTCGTTTATCTTTTTT+AGG - chr1_1:76345725-76345744 Msa0044700:intron 25.0%
!!! CTTTAATTTGCAAATGATGT+CGG + chr1_1:76345852-76345871 None:intergenic 25.0%
!! TATTACTAGTTTCCCAAAAA+TGG + chr1_1:76346242-76346261 None:intergenic 25.0%
!!! TTTTTGGGAAACTAGTAATA+TGG - chr1_1:76346242-76346261 Msa0044700:CDS 25.0%
!!! TTTTGGGAAACTAGTAATAT+GGG - chr1_1:76346243-76346262 Msa0044700:CDS 25.0%
! ATTGATATGCTAAATGAAAC+AGG + chr1_1:76346275-76346294 None:intergenic 25.0%
GACCACAAAATAATATTAGG+GGG - chr1_1:76344024-76344043 Msa0044700:three_prime_UTR 30.0%
ATAATATTAGGGGGAGTTAT+TGG - chr1_1:76344033-76344052 Msa0044700:three_prime_UTR 30.0%
TCTATATTTCCTACTTCCAT+TGG - chr1_1:76344110-76344129 Msa0044700:three_prime_UTR 30.0%
TCATTGAAATCCAATGGATA+CGG - chr1_1:76344140-76344159 Msa0044700:three_prime_UTR 30.0%
AAAGTTAGAAAGAGAGAAAG+AGG + chr1_1:76344501-76344520 None:intergenic 30.0%
CATGCAATTCACTGTTTAAT+TGG - chr1_1:76344601-76344620 Msa0044700:intron 30.0%
AAATCATTTATATTGGGCTG+CGG - chr1_1:76344710-76344729 Msa0044700:intron 30.0%
! TAGACTATAACACCTCTTTT+TGG - chr1_1:76344770-76344789 Msa0044700:intron 30.0%
! AGACTATAACACCTCTTTTT+GGG - chr1_1:76344771-76344790 Msa0044700:intron 30.0%
! ATGTAAATTTTTGTGTGTGG+GGG - chr1_1:76344822-76344841 Msa0044700:intron 30.0%
! ATGTTTCTATCTTCGATTCA+TGG - chr1_1:76344860-76344879 Msa0044700:intron 30.0%
TAGTCTACAATCATACTACA+AGG + chr1_1:76344990-76345009 None:intergenic 30.0%
AACAAAATGTCTTAAGCTTC+TGG - chr1_1:76345036-76345055 Msa0044700:intron 30.0%
TTCAGTCTAATTACAAGTGT+CGG + chr1_1:76345131-76345150 None:intergenic 30.0%
CTTAAATCAGACCATCAATT+TGG + chr1_1:76345551-76345570 None:intergenic 30.0%
! CAAATTGATGGTCTGATTTA+AGG - chr1_1:76345549-76345568 Msa0044700:intron 30.0%
ATTATCATTCATACGAATGC+AGG - chr1_1:76345755-76345774 Msa0044700:intron 30.0%
! TGATATGATATTACTAGCCT+AGG - chr1_1:76345911-76345930 Msa0044700:intron 30.0%
AGCTATTCTTAAACGTTCTT+TGG - chr1_1:76345934-76345953 Msa0044700:intron 30.0%
GCTATTCTTAAACGTTCTTT+GGG - chr1_1:76345935-76345954 Msa0044700:intron 30.0%
ACTCTCATACATTATATTGC+AGG - chr1_1:76345981-76346000 Msa0044700:intron 30.0%
TTATACTCTTCAATTAGCTG+CGG + chr1_1:76346054-76346073 None:intergenic 30.0%
GGTGAAACTTAAACAACATT+TGG - chr1_1:76346155-76346174 Msa0044700:CDS 30.0%
ACAACATTTGGATGCTTTAT+TGG - chr1_1:76346167-76346186 Msa0044700:CDS 30.0%
! TTCCAAATTGTGACCATTTT+TGG - chr1_1:76346226-76346245 Msa0044700:CDS 30.0%
!! TCCAAATTGTGACCATTTTT+GGG - chr1_1:76346227-76346246 Msa0044700:CDS 30.0%
!!! CTCACTTGTTTTTTGTACTA+AGG - chr1_1:76346453-76346472 Msa0044700:five_prime_UTR 30.0%
!! CTCCCCCTAATATTATTTTG+TGG + chr1_1:76344029-76344048 None:intergenic 35.0%
TGATCACTTTCGAATATACG+AGG + chr1_1:76344067-76344086 None:intergenic 35.0%
AATCAATGAAAGCCAGTTCA+AGG - chr1_1:76344371-76344390 Msa0044700:CDS 35.0%
GCAACGAATTCAACTAAAAC+CGG + chr1_1:76344420-76344439 None:intergenic 35.0%
TAGTTGAATTCGTTGCTACT+TGG - chr1_1:76344424-76344443 Msa0044700:CDS 35.0%
CTGTGCGTAGATTTAAATTG+CGG - chr1_1:76344631-76344650 Msa0044700:intron 35.0%
! GCAAATTCAACAGCATTTTG+CGG + chr1_1:76344673-76344692 None:intergenic 35.0%
! GACTATAACACCTCTTTTTG+GGG - chr1_1:76344772-76344791 Msa0044700:intron 35.0%
ACGTTAGAAGAATGACTTTG+AGG - chr1_1:76345273-76345292 Msa0044700:intron 35.0%
!!! AATTTGGGTTTTGGACAAGA+GGG + chr1_1:76345535-76345554 None:intergenic 35.0%
TTGTCCAAAACCCAAATTGA+TGG - chr1_1:76345537-76345556 Msa0044700:intron 35.0%
TAATAAGCCTCTGTTTGGTA+TGG + chr1_1:76345693-76345712 None:intergenic 35.0%
AGTACTAATAAGCCTCTGTT+TGG + chr1_1:76345698-76345717 None:intergenic 35.0%
AACGTTTAAGAATAGCTCCT+AGG + chr1_1:76345931-76345950 None:intergenic 35.0%
TATACTCTTCAATTAGCTGC+GGG + chr1_1:76346053-76346072 None:intergenic 35.0%
TCCCAAAAATGGTCACAATT+TGG + chr1_1:76346231-76346250 None:intergenic 35.0%
AAATCGGTCTGATCTGTTTA+TGG - chr1_1:76346420-76346439 Msa0044700:five_prime_UTR 35.0%
CACTTTCGAATATACGAGGA+TGG + chr1_1:76344063-76344082 None:intergenic 40.0%
! ATTTCCTACTTCCATTGGCT+CGG - chr1_1:76344115-76344134 Msa0044700:three_prime_UTR 40.0%
TCGGCTTCATTGAAATCCAA+TGG - chr1_1:76344134-76344153 Msa0044700:three_prime_UTR 40.0%
GAAGAGGTAATTGTACGAAC+CGG + chr1_1:76344210-76344229 None:intergenic 40.0%
TAAGGGAAGAGATGAGGATA+CGG + chr1_1:76344238-76344257 None:intergenic 40.0%
CCTAAGTTTACAGTGAGTTG+CGG - chr1_1:76344339-76344358 Msa0044700:exon 40.0%
TCAATACGGTTTCCTTGAAC+TGG + chr1_1:76344386-76344405 None:intergenic 40.0%
TGCTGTTGAATTTGCAGTAG+TGG - chr1_1:76344678-76344697 Msa0044700:intron 40.0%
TTATGCAACACCCCAAAAAG+AGG + chr1_1:76344785-76344804 None:intergenic 40.0%
TCTTCGATTCATGGTACATG+TGG - chr1_1:76344869-76344888 Msa0044700:intron 40.0%
AAGCCTATGAAACACGGATA+CGG + chr1_1:76345223-76345242 None:intergenic 40.0%
AAGTCATTCTTCTAACGTCG+CGG + chr1_1:76345271-76345290 None:intergenic 40.0%
!!! CAATTTGGGTTTTGGACAAG+AGG + chr1_1:76345536-76345555 None:intergenic 40.0%
!! CAGACCATCAATTTGGGTTT+TGG + chr1_1:76345544-76345563 None:intergenic 40.0%
GGTGTGTTAGCATTCATGAT+AGG - chr1_1:76345570-76345589 Msa0044700:intron 40.0%
TAGCATTCATGATAGGATGC+CGG - chr1_1:76345577-76345596 Msa0044700:intron 40.0%
!! GCTTTAAGGGTAGAATCTCA+GGG + chr1_1:76345830-76345849 None:intergenic 40.0%
!! GCAAATGATGTCGGCTTTAA+GGG + chr1_1:76345843-76345862 None:intergenic 40.0%
!! TGCAAATGATGTCGGCTTTA+AGG + chr1_1:76345844-76345863 None:intergenic 40.0%
!! TTCTTGAAGAGTATCAGGGT+TGG + chr1_1:76346090-76346109 None:intergenic 40.0%
ACCCTGATACTCTTCAAGAA+CGG - chr1_1:76346090-76346109 Msa0044700:CDS 40.0%
! GAAGGAAGGTGCAATTACAA+AGG - chr1_1:76346134-76346153 Msa0044700:CDS 40.0%
!! GAATGACACAGTTTTGTAGC+AGG - chr1_1:76346506-76346525 Msa0044700:five_prime_UTR 40.0%
TTTCAATGAAGCCGAGCCAA+TGG + chr1_1:76344129-76344148 None:intergenic 45.0%
GGTAATTGTACGAACCGGAA+CGG + chr1_1:76344205-76344224 None:intergenic 45.0%
TGAGGATACGGAGATTGAAG+AGG + chr1_1:76344226-76344245 None:intergenic 45.0%
CCGCAACTCACTGTAAACTT+AGG + chr1_1:76344342-76344361 None:intergenic 45.0%
TACAGTGAGTTGCGGTATCA+CGG - chr1_1:76344347-76344366 Msa0044700:exon 45.0%
CGGACGCTCAGATTTCAATA+CGG + chr1_1:76344400-76344419 None:intergenic 45.0%
CGTATTGAAATCTGAGCGTC+CGG - chr1_1:76344398-76344417 Msa0044700:CDS 45.0%
! GAATTCGTTGCTACTTGGTG+CGG - chr1_1:76344429-76344448 Msa0044700:CDS 45.0%
CCATAGCTGGAGTGATCAAA+CGG + chr1_1:76344461-76344480 None:intergenic 45.0%
TGAGCTATGGATTCCATAGC+TGG + chr1_1:76344474-76344493 None:intergenic 45.0%
AGCTATGGAATCCATAGCTC+AGG - chr1_1:76344473-76344492 Msa0044700:CDS 45.0%
!! AGAAAGAGGTACCTGAGCTA+TGG + chr1_1:76344487-76344506 None:intergenic 45.0%
!! GGGGTGTTGCATAAGACAAT+AGG - chr1_1:76344791-76344810 Msa0044700:intron 45.0%
ACATGTGGATTTCACTCGAC+AGG - chr1_1:76344884-76344903 Msa0044700:intron 45.0%
!! CTTTCAGGTGCTGCTTTGAT+TGG - chr1_1:76344963-76344982 Msa0044700:intron 45.0%
! AAGCTTCTGGCTATGAAGCA+CGG - chr1_1:76345049-76345068 Msa0044700:intron 45.0%
ATGAAACACGGATACGGACA+TGG + chr1_1:76345217-76345236 None:intergenic 45.0%
TGTCCGTATCCGTGTTTCAT+AGG - chr1_1:76345217-76345236 Msa0044700:intron 45.0%
ATCCGTGTTTCATAGGCTTC+TGG - chr1_1:76345224-76345243 Msa0044700:intron 45.0%
CACCAGAAGCCTATGAAACA+CGG + chr1_1:76345229-76345248 None:intergenic 45.0%
ATTAGCGTTTGCTTGCGAGT+TGG - chr1_1:76345340-76345359 Msa0044700:intron 45.0%
TTAGCGTTTGCTTGCGAGTT+GGG - chr1_1:76345341-76345360 Msa0044700:intron 45.0%
!!! CTTGCGAGTTGGGTTTTGAA+GGG - chr1_1:76345351-76345370 Msa0044700:intron 45.0%
!! TTTTGAAGGGAGGACTTTGG+AGG - chr1_1:76345364-76345383 Msa0044700:intron 45.0%
TTTGAAGGGAGGACTTTGGA+GGG - chr1_1:76345365-76345384 Msa0044700:intron 45.0%
AGCATTCATGATAGGATGCC+GGG - chr1_1:76345578-76345597 Msa0044700:intron 45.0%
CAAATCAACACACAGTGACC+CGG + chr1_1:76345599-76345618 None:intergenic 45.0%
!! GGCTTTAAGGGTAGAATCTC+AGG + chr1_1:76345831-76345850 None:intergenic 45.0%
!! CCCGTTCTTGAAGAGTATCA+GGG + chr1_1:76346094-76346113 None:intergenic 45.0%
CCCTGATACTCTTCAAGAAC+GGG - chr1_1:76346091-76346110 Msa0044700:CDS 45.0%
CCTGATACTCTTCAAGAACG+GGG - chr1_1:76346092-76346111 Msa0044700:CDS 45.0%
!!! ATTTGATATTTTTAAAAAAT+TGG - chr1_1:76345408-76345427 Msa0044700:intron 5.0%
GTTGAGGTCACCGTATCCAT+TGG + chr1_1:76344153-76344172 None:intergenic 50.0%
AGTGAGCGAAGCTGAAGTTG+AGG + chr1_1:76344169-76344188 None:intergenic 50.0%
TCTAACTCTCCCAACCGTTC+CGG - chr1_1:76344188-76344207 Msa0044700:three_prime_UTR 50.0%
TTGTACGAACCGGAACGGTT+GGG + chr1_1:76344200-76344219 None:intergenic 50.0%
ATTGTACGAACCGGAACGGT+TGG + chr1_1:76344201-76344220 None:intergenic 50.0%
ACGTGGTAAGGGAAGAGATG+AGG + chr1_1:76344244-76344263 None:intergenic 50.0%
TTCCCTTACCACGTTCTCAC+CGG - chr1_1:76344250-76344269 Msa0044700:three_prime_UTR 50.0%
! AGAGTCTTTGCCGAGTTGAC+CGG + chr1_1:76344272-76344291 None:intergenic 50.0%
CCGTTTGATCACTCCAGCTA+TGG - chr1_1:76344458-76344477 Msa0044700:CDS 50.0%
! CAGCATTTTGCGGTTTGCAG+CGG + chr1_1:76344663-76344682 None:intergenic 50.0%
CACGGACACTCCTCGTATTA+GGG - chr1_1:76345067-76345086 Msa0044700:intron 50.0%
ACGGACACTCCTCGTATTAG+GGG - chr1_1:76345068-76345087 Msa0044700:intron 50.0%
!! TACAAGTGTCGGTGTCGTGT+CGG + chr1_1:76345120-76345139 None:intergenic 50.0%
!! GCTTGCGAGTTGGGTTTTGA+AGG - chr1_1:76345350-76345369 Msa0044700:intron 50.0%
!!! GGGTTTTGAAGGGAGGACTT+TGG - chr1_1:76345361-76345380 Msa0044700:intron 50.0%
!!! TGGGTTTTGGACAAGAGGGA+GGG + chr1_1:76345531-76345550 None:intergenic 50.0%
!!! TTGGGTTTTGGACAAGAGGG+AGG + chr1_1:76345532-76345551 None:intergenic 50.0%
GCTACTGCCATACCAAACAG+AGG - chr1_1:76345683-76345702 Msa0044700:intron 50.0%
!! CCCCGTTCTTGAAGAGTATC+AGG + chr1_1:76346095-76346114 None:intergenic 50.0%
GATACTCTTCAAGAACGGGG+AGG - chr1_1:76346095-76346114 Msa0044700:CDS 50.0%
AAGAACGGGGAGGAATTTCC+AGG - chr1_1:76346105-76346124 Msa0044700:CDS 50.0%
GGAATTTCCAGGAAGCAGGA+AGG - chr1_1:76346116-76346135 Msa0044700:CDS 50.0%
TTTCCAGGAAGCAGGAAGGA+AGG - chr1_1:76346120-76346139 Msa0044700:CDS 50.0%
GAAGCCGAGCCAATGGAAGT+AGG + chr1_1:76344122-76344141 None:intergenic 55.0%
GACCGGTGAGAACGTGGTAA+GGG + chr1_1:76344255-76344274 None:intergenic 55.0%
TGACCGGTGAGAACGTGGTA+AGG + chr1_1:76344256-76344275 None:intergenic 55.0%
CACGTTCTCACCGGTCAACT+CGG - chr1_1:76344259-76344278 Msa0044700:three_prime_UTR 55.0%
GCTGGAGTGATCAAACGGCA+AGG + chr1_1:76344456-76344475 None:intergenic 55.0%
GCACGGACACTCCTCGTATT+AGG - chr1_1:76345066-76345085 Msa0044700:intron 55.0%
!! TCCTCGTATTAGGGGTGTCC+CGG - chr1_1:76345076-76345095 Msa0044700:intron 55.0%
!! TATTAGGGGTGTCCCGGTGT+CGG - chr1_1:76345082-76345101 Msa0044700:intron 55.0%
!!! GCGAGTTGGGTTTTGAAGGG+AGG - chr1_1:76345354-76345373 Msa0044700:intron 55.0%
GGGAGGAATTTCCAGGAAGC+AGG - chr1_1:76346112-76346131 Msa0044700:CDS 55.0%
! CGAGTTGACCGGTGAGAACG+TGG + chr1_1:76344261-76344280 None:intergenic 60.0%
ACCGGGACACCCCTAATACG+AGG + chr1_1:76345080-76345099 None:intergenic 60.0%
CACGACAAGTGTCCGACACC+GGG + chr1_1:76345097-76345116 None:intergenic 60.0%
GCACGACAAGTGTCCGACAC+CGG + chr1_1:76345098-76345117 None:intergenic 60.0%
ACGGATACGGACATGGACGC+GGG + chr1_1:76345210-76345229 None:intergenic 60.0%
CACGGATACGGACATGGACG+CGG + chr1_1:76345211-76345230 None:intergenic 60.0%
GCACCTTCCTTCCTGCTTCC+TGG + chr1_1:76346126-76346145 None:intergenic 60.0%
CATGGACGCGGGACACGACA+CGG + chr1_1:76345199-76345218 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 76344004 76346562 76344004 ID=Msa0044700;Name=Msa0044700
chr1_1 mRNA 76344004 76346562 76344004 ID=Msa0044700-mRNA-1;Parent=Msa0044700;Name=Msa0044700-mRNA-1;_AED=0.36;_eAED=0.36;_QI=149|1|1|1|1|1|2|353|182
chr1_1 exon 76344004 76344563 76344004 ID=Msa0044700-mRNA-1:exon:25947;Parent=Msa0044700-mRNA-1
chr1_1 exon 76346072 76346562 76346072 ID=Msa0044700-mRNA-1:exon:25946;Parent=Msa0044700-mRNA-1
chr1_1 five_prime_UTR 76346414 76346562 76346414 ID=Msa0044700-mRNA-1:five_prime_utr;Parent=Msa0044700-mRNA-1
chr1_1 CDS 76346072 76346413 76346072 ID=Msa0044700-mRNA-1:cds;Parent=Msa0044700-mRNA-1
chr1_1 CDS 76344357 76344563 76344357 ID=Msa0044700-mRNA-1:cds;Parent=Msa0044700-mRNA-1
chr1_1 three_prime_UTR 76344004 76344356 76344004 ID=Msa0044700-mRNA-1:three_prime_utr;Parent=Msa0044700-mRNA-1
Gene Sequence

>Msa0044700

ATGGATACGGTGACCTCAACTTCAGCTTCGCTCACTCTAACTCTCCCAACCGTTCCGGTTCGTACAATTACCTCTTCAATCTCCGTATCCTCATCTCTTCCCTTACCACGTTCTCACCGGTCAACTCGGCAAAGACTCTACTCTCTAAAAAGAAGCTTCTCGAATTCTTCTTCTTCTTATGCTGTTCCTAAGTTTACAGTGAGTTGCGGTATCACGGAAATCAATGAAAGCCAGTTCAAGGAAACCGTATTGAAATCTGAGCGTCCGGTTTTAGTTGAATTCGTTGCTACTTGGTGCGGTCCTTGCCGTTTGATCACTCCAGCTATGGAATCCATAGCTCAGGAATATGCAGACAGATTAACAGTTGTAAAGATTGATCATGATGCTAACCCGCAGCTAATTGAAGAGTATAAAGTTTATGGACTTCCAACCCTGATACTCTTCAAGAACGGGGAGGAATTTCCAGGAAGCAGGAAGGAAGGTGCAATTACAAAGGTGAAACTTAAACAACATTTGGATGCTTTATTGGAATCAATATCAGTTACATAG

Protein sequence

>Msa0044700

MDTVTSTSASLTLTLPTVPVRTITSSISVSSSLPLPRSHRSTRQRLYSLKRSFSNSSSSYAVPKFTVSCGITEINESQFKETVLKSERPVLVEFVATWCGPCRLITPAMESIAQEYADRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGEEFPGSRKEGAITKVKLKQHLDALLESISVT*