AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0742150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0742150 MtrunA17_Chr5g0443631 97.945 292 3 2 1 292 1 289 0.0 587
Msa0742150 MtrunA17_Chr4g0024431 63.158 266 84 4 31 292 21 276 3.58e-112 325
Msa0742150 MtrunA17_Chr5g0400131 27.485 171 118 3 103 272 5 170 1.52e-16 76.6
Msa0742150 MtrunA17_Chr1g0180291 27.072 181 121 5 106 282 13 186 5.34e-16 75.1
Msa0742150 MtrunA17_Chr4g0032201 28.824 170 113 2 108 275 13 176 7.89e-16 74.7
Msa0742150 MtrunA17_Chr4g0055081 26.316 171 120 3 103 272 5 170 8.64e-16 74.3
Msa0742150 MtrunA17_Chr3g0109721 30.588 170 108 4 106 272 9 171 1.30e-15 73.9
Msa0742150 MtrunA17_Chr3g0112681 29.412 170 112 2 108 275 13 176 3.03e-15 73.2
Msa0742150 MtrunA17_Chr2g0276941 27.811 169 116 2 108 275 16 179 4.07e-15 72.8
Msa0742150 MtrunA17_Chr5g0433561 30.588 170 108 4 106 272 9 171 1.05e-14 71.2
Msa0742150 MtrunA17_Chr2g0315551 28.415 183 118 5 98 275 3 177 1.50e-14 71.2
Msa0742150 MtrunA17_Chr2g0319951 27.717 184 118 6 98 275 3 177 3.56e-14 70.1
Msa0742150 MtrunA17_Chr4g0040781 25.521 192 134 4 98 287 3 187 9.32e-14 68.9
Msa0742150 MtrunA17_Chr1g0189361 24.862 181 129 3 96 275 4 178 1.20e-13 68.9
Msa0742150 MtrunA17_Chr3g0123971 25.146 171 122 3 103 272 5 170 1.43e-13 68.2
Msa0742150 MtrunA17_Chr3g0123821 26.744 172 114 5 108 275 17 180 1.57e-13 68.6
Msa0742150 MtrunA17_Chr7g0231131 27.072 181 119 6 99 275 8 179 2.10e-13 68.2
Msa0742150 MtrunA17_Chr8g0382221 24.561 171 123 3 103 272 5 170 2.33e-13 67.8
Msa0742150 MtrunA17_Chr1g0182301 26.190 168 114 4 101 265 10 170 2.88e-13 67.8
Msa0742150 MtrunA17_Chr7g0265001 26.923 182 121 5 106 282 15 189 3.78e-13 67.4
Msa0742150 MtrunA17_Chr8g0390561 26.667 165 115 2 109 272 11 170 4.13e-13 67.0
Msa0742150 MtrunA17_Chr1g0182321 26.190 168 114 4 101 265 10 170 4.34e-13 67.0
Msa0742150 MtrunA17_Chr7g0234201 24.118 170 119 4 108 274 14 176 4.36e-13 67.0
Msa0742150 MtrunA17_Chr1g0174281 28.070 171 113 4 108 275 16 179 5.26e-13 67.0
Msa0742150 MtrunA17_Chr7g0263071 25.466 161 111 3 108 265 16 170 5.66e-13 66.6
Msa0742150 MtrunA17_Chr7g0275991 29.545 176 110 4 97 265 6 174 8.84e-13 66.6
Msa0742150 MtrunA17_Chr8g0381841 26.744 172 114 5 108 275 18 181 9.26e-13 66.2
Msa0742150 MtrunA17_Chr7g0214241 23.214 168 123 2 108 274 16 178 1.20e-12 65.9
Msa0742150 MtrunA17_Chr2g0327911 23.125 160 117 2 108 265 16 171 1.21e-12 65.9
Msa0742150 MtrunA17_Chr4g0030911 24.845 161 112 3 108 265 16 170 1.66e-12 65.5
Msa0742150 MtrunA17_Chr2g0276931 23.810 168 122 2 108 274 10 172 1.74e-12 65.1
Msa0742150 MtrunA17_Chr1g0212521 24.845 161 112 3 108 265 16 170 1.77e-12 65.5
Msa0742150 MtrunA17_Chr4g0046261 23.958 192 137 4 98 287 3 187 2.47e-12 65.1
Msa0742150 MtrunA17_Chr1g0197331 25.556 180 125 4 107 282 15 189 3.56e-12 64.3
Msa0742150 MtrunA17_Chr2g0283131 24.479 192 136 4 98 287 3 187 4.98e-12 64.3
Msa0742150 MtrunA17_Chr2g0325091 24.852 169 121 2 108 275 12 175 1.21e-11 63.2
Msa0742150 MtrunA17_Chr3g0138121 26.012 173 121 1 104 276 10 175 1.72e-11 62.8
Msa0742150 MtrunA17_Chr3g0138111 26.012 173 121 1 104 276 10 175 1.99e-11 62.4
Msa0742150 MtrunA17_Chr3g0138101 26.012 173 121 1 104 276 10 175 2.05e-11 62.4
Msa0742150 MtrunA17_Chr8g0346421 26.316 190 125 5 91 272 5 187 4.03e-11 61.6
Msa0742150 MtrunA17_Chr8g0392931 25.424 177 124 3 108 283 15 184 6.59e-11 60.8
Msa0742150 MtrunA17_Chr8g0351861 25.294 170 115 5 108 273 17 178 7.77e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0742150 AT5G54840.1 62.838 296 96 5 1 292 1 286 9.47e-122 350
Msa0742150 AT3G21700.3 54.054 296 117 6 12 292 1 292 2.84e-105 308
Msa0742150 AT3G21700.1 53.716 296 117 7 12 292 1 291 4.80e-103 303
Msa0742150 AT3G21700.2 48.347 242 105 7 12 238 1 237 4.38e-67 209
Msa0742150 AT5G54840.2 54.206 214 84 5 1 210 1 204 2.18e-63 199
Msa0742150 AT5G54840.3 54.206 214 84 5 1 210 1 204 5.09e-63 199
Msa0742150 AT2G44610.1 26.316 171 120 2 103 272 5 170 4.66e-17 78.6
Msa0742150 AT5G59150.1 27.841 176 122 2 100 275 6 176 2.64e-16 76.6
Msa0742150 AT1G09630.1 27.604 192 124 3 108 289 13 199 5.22e-16 75.9
Msa0742150 AT1G07410.1 28.235 170 114 3 108 275 13 176 1.14e-15 74.7
Msa0742150 AT3G46830.1 28.824 170 113 2 108 275 13 176 1.25e-15 74.7
Msa0742150 AT3G46830.2 28.824 170 113 2 108 275 13 176 1.25e-15 74.7
Msa0742150 AT1G05810.1 26.471 170 115 4 108 274 13 175 5.12e-15 72.8
Msa0742150 AT1G05810.2 26.471 170 115 4 108 274 59 221 1.09e-14 72.8
Msa0742150 AT5G45130.1 29.412 170 110 4 106 272 9 171 1.15e-14 71.6
Msa0742150 AT1G16920.1 26.667 195 128 6 98 287 3 187 1.58e-14 71.6
Msa0742150 AT4G19640.1 29.412 170 110 4 106 272 9 171 1.67e-14 71.2
Msa0742150 AT4G18800.1 28.415 183 118 5 98 275 3 177 2.28e-14 71.2
Msa0742150 AT5G03530.2 26.111 180 124 4 106 282 12 185 2.48e-14 70.9
Msa0742150 AT5G03530.1 26.111 180 124 4 106 282 12 185 2.48e-14 70.9
Msa0742150 AT5G65270.1 27.128 188 121 6 95 275 3 181 3.11e-14 70.9
Msa0742150 AT2G43130.1 26.471 170 115 4 108 274 13 175 3.78e-14 70.5
Msa0742150 AT3G07410.1 27.647 170 113 4 108 274 13 175 4.70e-14 70.1
Msa0742150 AT4G39890.1 25.000 172 122 4 103 272 5 171 4.75e-14 70.1
Msa0742150 AT2G31680.1 26.036 169 115 4 108 273 13 174 4.99e-14 70.1
Msa0742150 AT5G55080.1 28.090 178 111 4 100 272 6 171 5.28e-14 70.1
Msa0742150 AT4G39990.1 27.647 170 113 4 108 274 18 180 6.97e-14 70.1
Msa0742150 AT5G45750.1 28.415 183 118 5 98 275 3 177 8.36e-14 69.7
Msa0742150 AT3G15060.1 25.967 181 127 3 98 276 3 178 1.91e-13 68.6
Msa0742150 AT3G09900.1 26.190 168 114 4 101 265 10 170 1.98e-13 68.6
Msa0742150 AT1G06400.1 28.022 182 120 5 98 275 3 177 2.24e-13 68.2
Msa0742150 AT5G47520.1 24.852 169 121 2 108 275 15 178 2.30e-13 68.6
Msa0742150 AT5G10260.1 23.977 171 124 2 103 272 5 170 2.42e-13 68.2
Msa0742150 AT3G53610.2 26.347 167 113 4 108 271 16 175 2.73e-13 68.2
Msa0742150 AT3G53610.3 26.347 167 113 4 108 271 16 175 2.73e-13 68.2
Msa0742150 AT3G53610.1 26.347 167 113 4 108 271 16 175 2.73e-13 68.2
Msa0742150 AT5G03520.1 26.190 168 114 4 101 265 10 170 4.25e-13 67.4
Msa0742150 AT2G22290.1 25.434 173 119 4 103 272 5 170 5.21e-13 67.0
Msa0742150 AT5G59840.1 26.347 167 113 4 108 271 16 175 9.14e-13 66.6
Msa0742150 AT5G45130.2 29.268 164 106 4 112 272 23 179 1.08e-12 66.2
Msa0742150 AT5G60860.1 25.000 180 128 3 98 275 3 177 1.22e-12 66.2
Msa0742150 AT3G46060.2 25.466 161 111 3 108 265 16 170 1.55e-12 65.9
Msa0742150 AT3G46060.3 25.466 161 111 3 108 265 16 170 1.55e-12 65.9
Msa0742150 AT3G46060.1 25.466 161 111 3 108 265 16 170 1.55e-12 65.9
Msa0742150 AT3G12160.1 26.316 171 116 4 108 275 16 179 1.56e-12 66.2
Msa0742150 AT4G19640.2 29.661 118 82 1 106 222 9 126 1.76e-12 64.3
Msa0742150 AT4G18430.1 26.087 184 123 6 97 275 2 177 1.82e-12 65.9
Msa0742150 AT4G19640.3 29.661 118 82 1 106 222 9 126 2.26e-12 65.1
Msa0742150 AT1G01200.1 25.882 170 117 4 108 274 29 192 6.49e-12 64.7
Msa0742150 AT5G47960.1 26.163 172 115 5 108 275 16 179 1.49e-11 63.2
Msa0742150 AT3G54840.1 25.137 183 126 4 94 272 20 195 2.79e-11 62.0
Msa0742150 AT5G20020.1 26.036 169 118 1 104 272 10 171 4.54e-11 62.0
Msa0742150 AT5G55190.1 26.036 169 118 1 104 272 10 171 5.10e-11 61.6
Msa0742150 AT5G20010.1 26.036 169 118 1 104 272 10 171 6.01e-11 61.6

Find 81 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATTTAGAAGTCAATTA+TGG 0.162376 5_1:+61960506 None:intergenic
GCAGAGTTGTGTCATCTTCT+TGG 0.184949 5_1:+61962940 None:intergenic
GTTCAGGTTGATGTTAAATA+TGG 0.230732 5_1:-61962908 Msa0742150:CDS
AATGGAAGGATTGAATTTAA+TGG 0.251785 5_1:-61962261 Msa0742150:CDS
ACAATTGTCCATTGTAAATC+TGG 0.259047 5_1:+61960910 None:intergenic
GAACAACAGCATACCAATAA+TGG 0.260980 5_1:-61962695 Msa0742150:CDS
TTCTTTCTTGTTGTTGATGA+TGG 0.271451 5_1:+61963119 None:intergenic
ATCTGACTCATACCCATTAT+TGG 0.276525 5_1:+61962682 None:intergenic
GGCCAAAGCCACGTGTATTT+TGG 0.288708 5_1:-61960246 Msa0742150:three_prime_UTR
CCTCTAAAATGTAGTCAAAA+TGG 0.293282 5_1:+61960337 None:intergenic
GTTCATTTGGAATAAACTTA+TGG 0.296115 5_1:-61962846 Msa0742150:CDS
ATAAGAGGAAGAAACAAAAT+TGG 0.309419 5_1:-61960436 Msa0742150:three_prime_UTR
ATTGGTATAATTTCCTTAGT+TGG 0.353029 5_1:-61960273 Msa0742150:three_prime_UTR
ACAATTTAGAAGTCAATTAT+GGG 0.359970 5_1:+61960507 None:intergenic
ACTGCAATTCCCATTCTAAT+AGG 0.364632 5_1:-61960964 Msa0742150:CDS
TTGTTGGGTGATTGCCATAT+TGG 0.368640 5_1:-61962632 Msa0742150:CDS
TGAAATAGAAATACATTAAG+TGG 0.373620 5_1:-61963161 Msa0742150:five_prime_UTR
CAAAGCTCTTTAACTTGCCT+TGG 0.379264 5_1:-61960560 Msa0742150:CDS
AAACTTATGGTTTGTTCTGT+TGG 0.381679 5_1:-61962833 Msa0742150:CDS
TACCAAAATACACGTGGCTT+TGG 0.384826 5_1:+61960244 None:intergenic
ATAGAAAGAAATTTGAAAGT+TGG 0.387772 5_1:-61960534 Msa0742150:CDS
TTGGTATAATTTCCTTAGTT+GGG 0.391503 5_1:-61960272 Msa0742150:three_prime_UTR
AAACTTGGTTCCTATTAGAA+TGG 0.395511 5_1:+61960954 None:intergenic
AACCTTAAGATTAGTTTGTT+GGG 0.398052 5_1:-61962647 Msa0742150:CDS
TGTTGGGTGATTGCCATATT+GGG 0.408372 5_1:-61962631 Msa0742150:CDS
AGCCATGGGAATTTGATCTA+AGG 0.420504 5_1:+61961998 None:intergenic
GACAAAACTTTGTATGTTCA+AGG 0.421423 5_1:-61962239 Msa0742150:CDS
ACTCTGCAGGAAAATTGTTC+AGG 0.422078 5_1:-61962924 Msa0742150:CDS
GTGTTGCACTTGAAAAGAAA+AGG 0.422846 5_1:+61960622 None:intergenic
TCTTTCTTGTTGTTGATGAT+GGG 0.427108 5_1:+61963120 None:intergenic
CACCCAACAAACTAATCTTA+AGG 0.431894 5_1:+61962645 None:intergenic
TTAAATATGGTATGCTTCAA+AGG 0.431941 5_1:-61962895 Msa0742150:CDS
CAATTGTCCATTGTAAATCT+GGG 0.433079 5_1:+61960911 None:intergenic
AACAACAGCATACCAATAAT+GGG 0.438949 5_1:-61962694 Msa0742150:CDS
GTCGCTGCCGTCTCCGGCTA+CGG 0.440861 5_1:-61962738 Msa0742150:CDS
TCTCCGGCTACGGTTGATGA+TGG 0.441368 5_1:-61962728 Msa0742150:CDS
AACTGCATCTTTACAAGCCA+TGG 0.445088 5_1:+61961983 None:intergenic
CCTAAAATAACACGTAGATT+AGG 0.446565 5_1:+61960360 None:intergenic
GTTGTTGATGATGGGGCGTT+TGG 0.452047 5_1:+61963128 None:intergenic
GGCTTATGCAAGGGCAATGA+AGG 0.452873 5_1:-61960649 Msa0742150:CDS
GAACCTTAAGATTAGTTTGT+TGG 0.454454 5_1:-61962648 Msa0742150:CDS
AGAAAAGAGGAGTTTGCAAA+TGG 0.455607 5_1:-61962279 Msa0742150:CDS
AACTTGGTTCCTATTAGAAT+GGG 0.455621 5_1:+61960955 None:intergenic
GCCGTTGTCGCTGCCGTCTC+CGG 0.463439 5_1:-61962744 Msa0742150:CDS
TGAAGCAAGAAAGTGGAATC+AGG 0.481024 5_1:-61961360 Msa0742150:intron
AAATAAGAGAGGAAAATAAG+AGG 0.487252 5_1:-61960451 Msa0742150:three_prime_UTR
AAGAGGAGTTTGCAAATGGA+AGG 0.488557 5_1:-61962275 Msa0742150:CDS
TTCATATTGACTTGCTAGGA+AGG 0.504912 5_1:-61960385 Msa0742150:three_prime_UTR
GCTTTGGCCTCACCCAACTA+AGG 0.514300 5_1:+61960260 None:intergenic
ATAATTTCCTTAGTTGGGTG+AGG 0.519174 5_1:-61960267 Msa0742150:three_prime_UTR
GTATGAGTCAGATTCTGATT+TGG 0.522092 5_1:-61962672 Msa0742150:CDS
TAAATATGGTATGCTTCAAA+GGG 0.523765 5_1:-61962894 Msa0742150:CDS
ATAACATCACATTATCCTAA+AGG 0.525994 5_1:-61960190 Msa0742150:three_prime_UTR
CTAAAGGAAAGGAAGAGAAA+AGG 0.526341 5_1:-61960174 None:intergenic
AAATTTCTTTCTATCGTCCA+AGG 0.528916 5_1:+61960543 None:intergenic
AAACCATCATCAACCGTAGC+CGG 0.529864 5_1:+61962725 None:intergenic
TCTAACAAAATCATCAAACT+TGG 0.542555 5_1:+61960939 None:intergenic
AGAAGATGACACAACTCTGC+AGG 0.552513 5_1:-61962937 Msa0742150:CDS
GCCGGAGACGGCAGCGACAA+CGG 0.555503 5_1:+61962743 None:intergenic
TGAACAAAGCCATATCTCAA+TGG 0.558554 5_1:-61962984 Msa0742150:exon
TACAGGCAAGGGCTTATGCA+AGG 0.559748 5_1:-61960659 Msa0742150:intron
TGTTGCACTTGAAAAGAAAA+GGG 0.560066 5_1:+61960623 None:intergenic
TAGGAAATGAGGTAGAAAAG+AGG 0.564038 5_1:-61962292 Msa0742150:CDS
GTCCTTAGATCAAATTCCCA+TGG 0.564993 5_1:-61962000 Msa0742150:CDS
GGTACAGTGAAGCAAGAAAG+TGG 0.579957 5_1:-61961367 Msa0742150:CDS
AATTGTCCATTGTAAATCTG+GGG 0.582951 5_1:+61960912 None:intergenic
TCATCAACCGTAGCCGGAGA+CGG 0.585501 5_1:+61962731 None:intergenic
ATCACATTATCCTAAAGGAA+AGG 0.588853 5_1:-61960185 Msa0742150:three_prime_UTR
GATCAAGTACGTAGGAAATG+AGG 0.589406 5_1:-61962303 Msa0742150:CDS
GAAATAGAAATACATTAAGT+GGG 0.592211 5_1:-61963160 Msa0742150:five_prime_UTR
CTTTCTTGTTGTTGATGATG+GGG 0.592367 5_1:+61963121 None:intergenic
ACAATGGACAATTGTAACAC+AGG 0.603332 5_1:-61960902 Msa0742150:intron
AAGAAGAACAAGAAGAAGAG+AGG 0.606686 5_1:-61963051 Msa0742150:five_prime_UTR
GAGGGTGATGAGAACATGAA+TGG 0.615850 5_1:-61960318 Msa0742150:three_prime_UTR
TCTATTTCACACAGAAACAG+AGG 0.619681 5_1:+61963175 None:intergenic
ACAGGCAAGGGCTTATGCAA+GGG 0.634009 5_1:-61960658 Msa0742150:intron
ACTGCATCTTTACAAGCCAT+GGG 0.635433 5_1:+61961984 None:intergenic
ATTGTCCATTGTAAATCTGG+GGG 0.655553 5_1:+61960913 None:intergenic
TAGTACATATAAAATAAGAG+AGG 0.665429 5_1:-61960462 Msa0742150:three_prime_UTR
ACAAAATACCAAAATACACG+TGG 0.703835 5_1:+61960238 None:intergenic
TGATGAGAACATGAATGGTG+TGG 0.718371 5_1:-61960313 Msa0742150:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAATATAGTAATATTT+CGG + chr5_1:61961877-61961896 None:intergenic 10.0%
!!! TTTTTTAAGTTAGTTATTGA+TGG - chr5_1:61961290-61961309 Msa0742150:intron 15.0%
!!! ATCATTTAACTTAACATTTT+TGG - chr5_1:61961536-61961555 Msa0742150:intron 15.0%
!!! TAAGGAAACATTTTAAATAA+AGG - chr5_1:61961592-61961611 Msa0742150:intron 15.0%
!! AAAAAAAAGGACTAATATAT+GGG - chr5_1:61961785-61961804 Msa0742150:intron 15.0%
!!! TTTTATGCTATAAGTTTTAT+AGG - chr5_1:61961896-61961915 Msa0742150:intron 15.0%
!!! TAAGTTTTATAGGAATATAA+TGG - chr5_1:61961906-61961925 Msa0742150:intron 15.0%
!! AAACATAATACATCTAATTA+GGG + chr5_1:61962326-61962345 None:intergenic 15.0%
!! AAAACATAATACATCTAATT+AGG + chr5_1:61962327-61962346 None:intergenic 15.0%
!!! ATTAGATGTATTATGTTTTA+TGG - chr5_1:61962328-61962347 Msa0742150:intron 15.0%
!!! AAAAGTAACACTTTATTTAA+AGG + chr5_1:61962614-61962633 None:intergenic 15.0%
!!! TTACTTTTTACCATATTATT+TGG - chr5_1:61962626-61962645 Msa0742150:CDS 15.0%
!! TGAAATAGAAATACATTAAG+TGG - chr5_1:61960188-61960207 Msa0742150:three_prime_UTR 20.0%
!! GAAATAGAAATACATTAAGT+GGG - chr5_1:61960189-61960208 Msa0742150:three_prime_UTR 20.0%
!! TTTACCTTAAATGTTGAAAT+GGG - chr5_1:61960773-61960792 Msa0742150:intron 20.0%
!! GAGAAAATCATATAATTCAA+AGG + chr5_1:61960919-61960938 None:intergenic 20.0%
!!! TATAATTGATATCGATTTGT+TGG - chr5_1:61960943-61960962 Msa0742150:CDS 20.0%
!!! TCGTATTTCATTTTGTATAT+GGG - chr5_1:61961136-61961155 Msa0742150:intron 20.0%
!! TAAAAAATAAATGCAGAACA+TGG + chr5_1:61961217-61961236 None:intergenic 20.0%
!!! TTTTTTAGATTTCTCTCATT+AGG - chr5_1:61961230-61961249 Msa0742150:intron 20.0%
!! ATTGATGGAAAATTATTATG+TGG - chr5_1:61961305-61961324 Msa0742150:intron 20.0%
!! TTGATGGAAAATTATTATGT+GGG - chr5_1:61961306-61961325 Msa0742150:intron 20.0%
!!! GTAAGTTCTGAAATATTATT+AGG - chr5_1:61961436-61961455 Msa0742150:intron 20.0%
!! TAAGTAAATGGAAAAAAAGA+AGG + chr5_1:61961470-61961489 None:intergenic 20.0%
!!! TTTCCATTTACTTAATTTTG+AGG - chr5_1:61961476-61961495 Msa0742150:intron 20.0%
!! TAACCTCAAAATTAAGTAAA+TGG + chr5_1:61961482-61961501 None:intergenic 20.0%
!!! GTGACACTTTTTAAAATTAT+AGG + chr5_1:61961512-61961531 None:intergenic 20.0%
!!! TATTTTTAAAACCTATGCTT+TGG - chr5_1:61961664-61961683 Msa0742150:intron 20.0%
!! CTATATGTATTCGAAAAAAA+AGG - chr5_1:61961772-61961791 Msa0742150:intron 20.0%
!! GAAAAAAAAGGACTAATATA+TGG - chr5_1:61961784-61961803 Msa0742150:intron 20.0%
!! TTCTTACTATAATAGTTCAA+AGG + chr5_1:61962126-61962145 None:intergenic 20.0%
!!! TATAGTAAGAAAAAGTTTTG+AGG - chr5_1:61962135-61962154 Msa0742150:intron 20.0%
!! AATAACAAAGCCAAATAATA+TGG + chr5_1:61962639-61962658 None:intergenic 20.0%
!!! CAAAATTTTCAAGTTTATCA+TGG - chr5_1:61962766-61962785 Msa0742150:CDS 20.0%
!! ATAGAAAGAAATTTGAAAGT+TGG - chr5_1:61962815-61962834 Msa0742150:CDS 20.0%
!! ACAATTTAGAAGTCAATTAT+GGG + chr5_1:61962845-61962864 None:intergenic 20.0%
!! AACAATTTAGAAGTCAATTA+TGG + chr5_1:61962846-61962865 None:intergenic 20.0%
!!! ATTTTATATGTACTAGACAA+AGG + chr5_1:61962882-61962901 None:intergenic 20.0%
!! TAGTACATATAAAATAAGAG+AGG - chr5_1:61962887-61962906 Msa0742150:CDS 20.0%
! TTAAATATGGTATGCTTCAA+AGG - chr5_1:61960454-61960473 Msa0742150:three_prime_UTR 25.0%
! TAAATATGGTATGCTTCAAA+GGG - chr5_1:61960455-61960474 Msa0742150:three_prime_UTR 25.0%
!! GTTCATTTGGAATAAACTTA+TGG - chr5_1:61960503-61960522 Msa0742150:exon 25.0%
!!! AACCTTAAGATTAGTTTGTT+GGG - chr5_1:61960702-61960721 Msa0742150:intron 25.0%
!! AAAAAGTAGTTTTCCCAATA+TGG + chr5_1:61960734-61960753 None:intergenic 25.0%
!!! TATTGGGAAAACTACTTTTT+TGG - chr5_1:61960734-61960753 Msa0742150:intron 25.0%
! CTTTACCTTAAATGTTGAAA+TGG - chr5_1:61960772-61960791 Msa0742150:intron 25.0%
!! ATATGTTTGATTAGAAGTGT+CGG + chr5_1:61960856-61960875 None:intergenic 25.0%
! GTATGTATTTCATAGGTTAT+AGG - chr5_1:61960988-61961007 Msa0742150:intron 25.0%
! AATGGAAGGATTGAATTTAA+TGG - chr5_1:61961088-61961107 Msa0742150:intron 25.0%
!! CTCGTATTTCATTTTGTATA+TGG - chr5_1:61961135-61961154 Msa0742150:intron 25.0%
! TGATGGAAAATTATTATGTG+GGG - chr5_1:61961307-61961326 Msa0742150:intron 25.0%
! TTATTATGTGGGGTTTAATT+AGG - chr5_1:61961317-61961336 Msa0742150:intron 25.0%
!!! TAACATTTTTGGTTCATTTG+TGG - chr5_1:61961547-61961566 Msa0742150:intron 25.0%
!!! CTAAATTTTGAGGTTCAAAT+TGG + chr5_1:61961830-61961849 None:intergenic 25.0%
! GAACCTCAAAATTTAGTTAA+AGG - chr5_1:61961834-61961853 Msa0742150:intron 25.0%
! TCACTGAAATTAAATTTCGT+TGG - chr5_1:61962033-61962052 Msa0742150:intron 25.0%
! TGAGGTAGTTAAAATAGAAA+TGG - chr5_1:61962153-61962172 Msa0742150:intron 25.0%
!! GTAAGTGACATTAAATTTTC+AGG - chr5_1:61962238-61962257 Msa0742150:CDS 25.0%
! TCTAACAAAATCATCAAACT+TGG + chr5_1:61962413-61962432 None:intergenic 25.0%
!!! ATCTTAAGTGGATTCAATTT+TGG - chr5_1:61962501-61962520 Msa0742150:intron 25.0%
!!! TCTTAAGTGGATTCAATTTT+GGG - chr5_1:61962502-61962521 Msa0742150:intron 25.0%
!!! TTCATTGCTTTTCTTTTTGT+GGG - chr5_1:61962569-61962588 Msa0742150:intron 25.0%
! AAATAAGAGAGGAAAATAAG+AGG - chr5_1:61962898-61962917 Msa0742150:CDS 25.0%
! ATAAGAGGAAGAAACAAAAT+TGG - chr5_1:61962913-61962932 Msa0742150:CDS 25.0%
!!! CATTTTGACTACATTTTAGA+GGG - chr5_1:61963013-61963032 Msa0742150:five_prime_UTR 25.0%
! ATTGGTATAATTTCCTTAGT+TGG - chr5_1:61963076-61963095 Msa0742150:five_prime_UTR 25.0%
! TTGGTATAATTTCCTTAGTT+GGG - chr5_1:61963077-61963096 Msa0742150:five_prime_UTR 25.0%
! ATAACATCACATTATCCTAA+AGG - chr5_1:61963159-61963178 Msa0742150:five_prime_UTR 25.0%
!! TCTTTCTTGTTGTTGATGAT+GGG + chr5_1:61960232-61960251 None:intergenic 30.0%
!! TTCTTTCTTGTTGTTGATGA+TGG + chr5_1:61960233-61960252 None:intergenic 30.0%
!! GTTCAGGTTGATGTTAAATA+TGG - chr5_1:61960441-61960460 Msa0742150:three_prime_UTR 30.0%
! CTTTTGTTGGTCAGTTTTTT+AGG - chr5_1:61960481-61960500 Msa0742150:three_prime_UTR 30.0%
!!! GTCAGTTTTTTAGGTTCATT+TGG - chr5_1:61960490-61960509 Msa0742150:three_prime_UTR 30.0%
!! AAACTTATGGTTTGTTCTGT+TGG - chr5_1:61960516-61960535 Msa0742150:CDS 30.0%
AACAACAGCATACCAATAAT+GGG - chr5_1:61960655-61960674 Msa0742150:CDS 30.0%
!! GAACCTTAAGATTAGTTTGT+TGG - chr5_1:61960701-61960720 Msa0742150:intron 30.0%
ATGACCCATTTCAACATTTA+AGG + chr5_1:61960780-61960799 None:intergenic 30.0%
!!! CATTTTAGTGTTGACTATGT+TGG - chr5_1:61960811-61960830 Msa0742150:intron 30.0%
ATCTGGTGTATGTATTTCAT+AGG - chr5_1:61960981-61961000 Msa0742150:intron 30.0%
!!! TTTTTTCAGATCAAGTACGT+AGG - chr5_1:61961038-61961057 Msa0742150:intron 30.0%
GACAAAACTTTGTATGTTCA+AGG - chr5_1:61961110-61961129 Msa0742150:intron 30.0%
! CAACTACTAGTTTATAGTGA+AGG - chr5_1:61961712-61961731 Msa0742150:intron 30.0%
CGAATACATATAGACAATGT+CGG + chr5_1:61961765-61961784 None:intergenic 30.0%
!!! AATTTTGAGGTTCAAATTGG+TGG + chr5_1:61961827-61961846 None:intergenic 30.0%
! GGTCCTTTAACTAAATTTTG+AGG + chr5_1:61961840-61961859 None:intergenic 30.0%
! ATTTCGGCTTACTTATTTCT+TGG + chr5_1:61961861-61961880 None:intergenic 30.0%
! AGTTGGAACTACATTTTACT+TGG + chr5_1:61962073-61962092 None:intergenic 30.0%
!! AATGAAAAGCATTTGGAAGT+TGG + chr5_1:61962090-61962109 None:intergenic 30.0%
!! GTGTGAAAATGAAAAGCATT+TGG + chr5_1:61962097-61962116 None:intergenic 30.0%
TCTGCAAATTGAATGTAACA+TGG + chr5_1:61962366-61962385 None:intergenic 30.0%
AACTTGGTTCCTATTAGAAT+GGG + chr5_1:61962397-61962416 None:intergenic 30.0%
AAACTTGGTTCCTATTAGAA+TGG + chr5_1:61962398-61962417 None:intergenic 30.0%
AATTGTCCATTGTAAATCTG+GGG + chr5_1:61962440-61962459 None:intergenic 30.0%
CAATTGTCCATTGTAAATCT+GGG + chr5_1:61962441-61962460 None:intergenic 30.0%
ACAATTGTCCATTGTAAATC+TGG + chr5_1:61962442-61962461 None:intergenic 30.0%
TGATCAACTTACATCTTAAG+TGG - chr5_1:61962489-61962508 Msa0742150:intron 30.0%
!! CTTAAGTGGATTCAATTTTG+GGG - chr5_1:61962503-61962522 Msa0742150:intron 30.0%
!! GTTCATTGCTTTTCTTTTTG+TGG - chr5_1:61962568-61962587 Msa0742150:intron 30.0%
TGTTGCACTTGAAAAGAAAA+GGG + chr5_1:61962729-61962748 None:intergenic 30.0%
AAATTTCTTTCTATCGTCCA+AGG + chr5_1:61962809-61962828 None:intergenic 30.0%
!!! TCTTTTCATATTGACTTGCT+AGG - chr5_1:61962960-61962979 Msa0742150:CDS 30.0%
CCTAAAATAACACGTAGATT+AGG + chr5_1:61962992-61963011 None:intergenic 30.0%
!!! CCTAATCTACGTGTTATTTT+AGG - chr5_1:61962989-61963008 Msa0742150:five_prime_UTR 30.0%
!! CCTCTAAAATGTAGTCAAAA+TGG + chr5_1:61963015-61963034 None:intergenic 30.0%
!!! CCATTTTGACTACATTTTAG+AGG - chr5_1:61963012-61963031 Msa0742150:five_prime_UTR 30.0%
ACAAAATACCAAAATACACG+TGG + chr5_1:61963114-61963133 None:intergenic 30.0%
ATCACATTATCCTAAAGGAA+AGG - chr5_1:61963164-61963183 Msa0742150:five_prime_UTR 30.0%
!! CTTTCTTGTTGTTGATGATG+GGG + chr5_1:61960231-61960250 None:intergenic 35.0%
AAGAAGAACAAGAAGAAGAG+AGG - chr5_1:61960298-61960317 Msa0742150:three_prime_UTR 35.0%
TGAACAAAGCCATATCTCAA+TGG - chr5_1:61960365-61960384 Msa0742150:three_prime_UTR 35.0%
!! TCACTTTTGCCATTGAGATA+TGG + chr5_1:61960377-61960396 None:intergenic 35.0%
!!! CTTCAAAGGGTATCTTTTGT+TGG - chr5_1:61960468-61960487 Msa0742150:three_prime_UTR 35.0%
GAACAACAGCATACCAATAA+TGG - chr5_1:61960654-61960673 Msa0742150:CDS 35.0%
ATCTGACTCATACCCATTAT+TGG + chr5_1:61960670-61960689 None:intergenic 35.0%
GTATGAGTCAGATTCTGATT+TGG - chr5_1:61960677-61960696 Msa0742150:intron 35.0%
CACCCAACAAACTAATCTTA+AGG + chr5_1:61960707-61960726 None:intergenic 35.0%
GGTCTTTGAATGTTTGAATC+TGG - chr5_1:61960964-61960983 Msa0742150:CDS 35.0%
TAGGAAATGAGGTAGAAAAG+AGG - chr5_1:61961057-61961076 Msa0742150:intron 35.0%
AGAAAAGAGGAGTTTGCAAA+TGG - chr5_1:61961070-61961089 Msa0742150:intron 35.0%
! TTTTGTATATGGGATGTTGC+AGG - chr5_1:61961146-61961165 Msa0742150:intron 35.0%
ACTAATATATGGGACCAATC+TGG - chr5_1:61961795-61961814 Msa0742150:intron 35.0%
CTAATATATGGGACCAATCT+GGG - chr5_1:61961796-61961815 Msa0742150:intron 35.0%
! TGGAACTACATTTTACTTGG+TGG + chr5_1:61962070-61962089 None:intergenic 35.0%
TGAAACTGTAGTAGCCTTTA+TGG - chr5_1:61962205-61962224 Msa0742150:CDS 35.0%
TTACCACTTATCAGCCATAA+AGG + chr5_1:61962222-61962241 None:intergenic 35.0%
ACTGCAATTCCCATTCTAAT+AGG - chr5_1:61962385-61962404 Msa0742150:intron 35.0%
ATTGTCCATTGTAAATCTGG+GGG + chr5_1:61962439-61962458 None:intergenic 35.0%
ACAATGGACAATTGTAACAC+AGG - chr5_1:61962447-61962466 Msa0742150:intron 35.0%
ACTTTAACCAACATGCATGT+AGG + chr5_1:61962529-61962548 None:intergenic 35.0%
GACTTGTACCTTTCATATAC+AGG - chr5_1:61962673-61962692 Msa0742150:CDS 35.0%
TACCTTTCATATACAGGCAA+GGG - chr5_1:61962679-61962698 Msa0742150:CDS 35.0%
GTGTTGCACTTGAAAAGAAA+AGG + chr5_1:61962730-61962749 None:intergenic 35.0%
!! TTCATATTGACTTGCTAGGA+AGG - chr5_1:61962964-61962983 Msa0742150:CDS 35.0%
!!! AATGGTGTGGCTCATTTTTT+TGG - chr5_1:61963049-61963068 Msa0742150:five_prime_UTR 35.0%
!!! GCTCATTTTTTTGGTGTCAT+TGG - chr5_1:61963058-61963077 Msa0742150:five_prime_UTR 35.0%
ATAATTTCCTTAGTTGGGTG+AGG - chr5_1:61963082-61963101 Msa0742150:five_prime_UTR 35.0%
! CTTTTCTCTTCCTTTCCTTT+AGG + chr5_1:61963177-61963196 None:intergenic 35.0%
ACTCTGCAGGAAAATTGTTC+AGG - chr5_1:61960425-61960444 Msa0742150:three_prime_UTR 40.0%
TTGTTGGGTGATTGCCATAT+TGG - chr5_1:61960717-61960736 Msa0742150:intron 40.0%
TGTTGGGTGATTGCCATATT+GGG - chr5_1:61960718-61960737 Msa0742150:intron 40.0%
!! ATTCAAAGGCGTCTCAATGT+CGG + chr5_1:61960905-61960924 None:intergenic 40.0%
GATCAAGTACGTAGGAAATG+AGG - chr5_1:61961046-61961065 Msa0742150:intron 40.0%
AAGAGGAGTTTGCAAATGGA+AGG - chr5_1:61961074-61961093 Msa0742150:intron 40.0%
GTCCTTAGATCAAATTCCCA+TGG - chr5_1:61961349-61961368 Msa0742150:intron 40.0%
AGCCATGGGAATTTGATCTA+AGG + chr5_1:61961354-61961373 None:intergenic 40.0%
ACTGCATCTTTACAAGCCAT+GGG + chr5_1:61961368-61961387 None:intergenic 40.0%
AACTGCATCTTTACAAGCCA+TGG + chr5_1:61961369-61961388 None:intergenic 40.0%
!! GTTCATTTGTGGCTCTAACA+TGG - chr5_1:61961558-61961577 Msa0742150:intron 40.0%
AACATGGAGTTGACATGGTA+AGG - chr5_1:61961574-61961593 Msa0742150:intron 40.0%
!! AACCTATGCTTTGGAGAAGA+AGG - chr5_1:61961673-61961692 Msa0742150:intron 40.0%
AACCTTCTTCTCCAAAGCAT+AGG + chr5_1:61961678-61961697 None:intergenic 40.0%
!! CTGTGTTTTTGCAGTGTTGT+TGG - chr5_1:61961957-61961976 Msa0742150:CDS 40.0%
!! GTTTTTGCAGTGTTGTTGGA+TGG - chr5_1:61961961-61961980 Msa0742150:CDS 40.0%
TGAAGCAAGAAAGTGGAATC+AGG - chr5_1:61961989-61962008 Msa0742150:CDS 40.0%
TAGCCTTTATGGCTGATAAG+TGG - chr5_1:61962216-61962235 Msa0742150:CDS 40.0%
GTACCTTTCATATACAGGCA+AGG - chr5_1:61962678-61962697 Msa0742150:CDS 40.0%
!! CAAAGCTCTTTAACTTGCCT+TGG - chr5_1:61962789-61962808 Msa0742150:CDS 40.0%
TGATGAGAACATGAATGGTG+TGG - chr5_1:61963036-61963055 Msa0742150:five_prime_UTR 40.0%
TACCAAAATACACGTGGCTT+TGG + chr5_1:61963108-61963127 None:intergenic 40.0%
!!! TGATGGGGCGTTTGGTTTTT+GGG + chr5_1:61960216-61960235 None:intergenic 45.0%
!!! ATGATGGGGCGTTTGGTTTT+TGG + chr5_1:61960217-61960236 None:intergenic 45.0%
GCAGAGTTGTGTCATCTTCT+TGG + chr5_1:61960412-61960431 None:intergenic 45.0%
AGAAGATGACACAACTCTGC+AGG - chr5_1:61960412-61960431 Msa0742150:three_prime_UTR 45.0%
AAACCATCATCAACCGTAGC+CGG + chr5_1:61960627-61960646 None:intergenic 45.0%
GCTCTAACATGGAGTTGACA+TGG - chr5_1:61961569-61961588 Msa0742150:intron 45.0%
ATATATGGGACCAATCTGGG+TGG - chr5_1:61961799-61961818 Msa0742150:intron 45.0%
GGTACAGTGAAGCAAGAAAG+TGG - chr5_1:61961982-61962001 Msa0742150:CDS 45.0%
GACTTCCCCCAGATTTACAA+TGG - chr5_1:61962431-61962450 Msa0742150:intron 45.0%
AGCCCTTGCCTGTATATGAA+AGG + chr5_1:61962684-61962703 None:intergenic 45.0%
GAGGGTGATGAGAACATGAA+TGG - chr5_1:61963031-61963050 Msa0742150:five_prime_UTR 45.0%
!! GTTGTTGATGATGGGGCGTT+TGG + chr5_1:61960224-61960243 None:intergenic 50.0%
! TTTGGGGCCTACATGCATGT+TGG - chr5_1:61962519-61962538 Msa0742150:intron 50.0%
TACAGGCAAGGGCTTATGCA+AGG - chr5_1:61962690-61962709 Msa0742150:CDS 50.0%
ACAGGCAAGGGCTTATGCAA+GGG - chr5_1:61962691-61962710 Msa0742150:CDS 50.0%
GGCTTATGCAAGGGCAATGA+AGG - chr5_1:61962700-61962719 Msa0742150:CDS 50.0%
! GGCCAAAGCCACGTGTATTT+TGG - chr5_1:61963103-61963122 Msa0742150:five_prime_UTR 50.0%
TCATCAACCGTAGCCGGAGA+CGG + chr5_1:61960621-61960640 None:intergenic 55.0%
!! TCTCCGGCTACGGTTGATGA+TGG - chr5_1:61960621-61960640 Msa0742150:CDS 55.0%
! ATTGGTGGCTCCACCCAGAT+TGG + chr5_1:61961812-61961831 None:intergenic 55.0%
GCTTTGGCCTCACCCAACTA+AGG + chr5_1:61963092-61963111 None:intergenic 55.0%
GCCGTTGTCGCTGCCGTCTC+CGG - chr5_1:61960605-61960624 Msa0742150:CDS 70.0%
GCCGGAGACGGCAGCGACAA+CGG + chr5_1:61960609-61960628 None:intergenic 70.0%
GTCGCTGCCGTCTCCGGCTA+CGG - chr5_1:61960611-61960630 Msa0742150:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 61960175 61963196 61960175 ID=Msa0742150;Name=Msa0742150
chr5_1 mRNA 61960175 61963196 61960175 ID=Msa0742150-mRNA-1;Parent=Msa0742150;Name=Msa0742150-mRNA-1;_AED=0.08;_eAED=0.08;_QI=209|1|1|1|1|1|6|337|292
chr5_1 exon 61960175 61960676 61960175 ID=Msa0742150-mRNA-1:exon:18083;Parent=Msa0742150-mRNA-1
chr5_1 exon 61960903 61960986 61960903 ID=Msa0742150-mRNA-1:exon:18082;Parent=Msa0742150-mRNA-1
chr5_1 exon 61961361 61961400 61961361 ID=Msa0742150-mRNA-1:exon:18081;Parent=Msa0742150-mRNA-1
chr5_1 exon 61961936 61962032 61961936 ID=Msa0742150-mRNA-1:exon:18080;Parent=Msa0742150-mRNA-1
chr5_1 exon 61962204 61962324 61962204 ID=Msa0742150-mRNA-1:exon:18079;Parent=Msa0742150-mRNA-1
chr5_1 exon 61962616 61963196 61962616 ID=Msa0742150-mRNA-1:exon:18078;Parent=Msa0742150-mRNA-1
chr5_1 five_prime_UTR 61962988 61963196 61962988 ID=Msa0742150-mRNA-1:five_prime_utr;Parent=Msa0742150-mRNA-1
chr5_1 CDS 61962616 61962987 61962616 ID=Msa0742150-mRNA-1:cds;Parent=Msa0742150-mRNA-1
chr5_1 CDS 61962204 61962324 61962204 ID=Msa0742150-mRNA-1:cds;Parent=Msa0742150-mRNA-1
chr5_1 CDS 61961936 61962032 61961936 ID=Msa0742150-mRNA-1:cds;Parent=Msa0742150-mRNA-1
chr5_1 CDS 61961361 61961400 61961361 ID=Msa0742150-mRNA-1:cds;Parent=Msa0742150-mRNA-1
chr5_1 CDS 61960903 61960986 61960903 ID=Msa0742150-mRNA-1:cds;Parent=Msa0742150-mRNA-1
chr5_1 CDS 61960512 61960676 61960512 ID=Msa0742150-mRNA-1:cds;Parent=Msa0742150-mRNA-1
chr5_1 three_prime_UTR 61960175 61960511 61960175 ID=Msa0742150-mRNA-1:three_prime_utr;Parent=Msa0742150-mRNA-1
Gene Sequence

>Msa0742150

ATGGCAAAAGTGATAAAAGAAACAACCAAGAAGATGACACAACTCTGCAGGAAAATTGTTCAGGTTGATGTTAAATATGGTATGCTTCAAAGGGTATCTTTTGTTGGTCAGTTTTTTAGGTTCATTTGGAATAAACTTATGGTTTGTTCTGTTGGAAGATCACAAGCTCAATATAGAAGATTATCTCTTAATCATTCTTCTGCTTCTGCTTCTTCTTCTTCGCCGTTGTCGCTGCCGTCTCCGGCTACGGTTGATGATGGTTTCACACGAGAACAACAGCATACCAATAATGGGTATGAGTCAGATTCTGATTTGGTGAACCTTAAGATTAGTTTGTTGGGTGATTGCCATATTGGGAAAACTACTTTTTTGATCAAGTACGTAGGAAATGAGGTAGAAAAGAGGAGTTTGCAAATGGAAGGATTGAATTTAATGGACAAAACTTTGTATGTTCAAGGAGCTCGTATTTCATTTTGTATATGGGATGTTGCAGGTGACAAAAAGTCCTTAGATCAAATTCCCATGGCTTGTAAAGATGCAGTTGCTCTACTGATTATGTTTGATCTCACTAGTCGTTCTACACTAAACAATGTTGTTGGATGGTACAGTGAAGCAAGAAAGTGGAATCAGACTGCAATTCCCATTCTAATAGGAACCAAGTTTGATGATTTTGTTAGACTTCCCCCAGATTTACAATGGACAATTGTAACACAGGCAAGGGCTTATGCAAGGGCAATGAAGGCAACCCTTTTCTTTTCAAGTGCAACACATAATATAAATGTCAACAAAATTTTCAAGTTTATCATGGCAAAGCTCTTTAACTTGCCTTGGACGATAGAAAGAAATTTGAAAGTTGGAGAACCCATAATTGACTTCTAA

Protein sequence

>Msa0742150

MAKVIKETTKKMTQLCRKIVQVDVKYGMLQRVSFVGQFFRFIWNKLMVCSVGRSQAQYRRLSLNHSSASASSSSPLSLPSPATVDDGFTREQQHTNNGYESDSDLVNLKISLLGDCHIGKTTFLIKYVGNEVEKRSLQMEGLNLMDKTLYVQGARISFCIWDVAGDKKSLDQIPMACKDAVALLIMFDLTSRSTLNNVVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIVTQARAYARAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTIERNLKVGEPIIDF*