AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0272410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0272410 MtrunA17_Chr2g0281981 99.042 313 3 0 1 313 1 313 0.0 634
Msa0272410 MtrunA17_Chr4g0047571 71.523 302 73 5 21 313 9 306 1.02e-132 379
Msa0272410 MtrunA17_Chr8g0387061 54.286 315 116 9 8 313 31 326 1.23e-80 248
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0272410 AT2G20760.1 56.209 306 106 8 21 313 27 317 8.06e-79 243
Msa0272410 AT2G40060.1 53.509 228 76 4 30 251 25 228 2.31e-70 219
Msa0272410 AT3G51890.1 66.038 159 51 1 101 259 85 240 2.63e-62 198

Find 127 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTCGCAGAGGCTTCTTTC+TGG 0.092482 2_3:+3957125 None:intergenic
TCTTTCTGGGGTTCCTCTGC+TGG 0.195125 2_3:+3957139 None:intergenic
CATTGTAGTACCTGCATTAA+AGG 0.217820 2_3:-3956974 Msa0272410:three_prime_UTR
GTTTGCCGGGCTTAGGGCCT+TGG 0.222402 2_3:+3957359 None:intergenic
TATTAGTTCCTAATGCTTAT+TGG 0.271513 2_3:-3957000 Msa0272410:three_prime_UTR
GAAACATCATCTAAAGTAAC+TGG 0.273669 2_3:-3957217 Msa0272410:CDS
TGAACACTGCATGTGCAAAA+AGG 0.289159 2_3:+3957042 None:intergenic
GGTGACATCGCCGTCGAAAT+TGG 0.302399 2_3:+3960481 None:intergenic
AAGAGGCAGACAAAGCTTAT+TGG 0.306471 2_3:-3957477 Msa0272410:CDS
CGACCTTTATAGGCATGTTT+TGG 0.312515 2_3:-3956764 Msa0272410:three_prime_UTR
TGAGGAGGCTGAGGAGTATA+AGG 0.315912 2_3:-3957696 Msa0272410:CDS
GGTCGCAGAGGCTTCTTTCT+GGG 0.316434 2_3:+3957126 None:intergenic
GGAAAGATCTGTGGGTTTGC+CGG 0.324935 2_3:+3957345 None:intergenic
ACATGTAGATTCAGTGTTCA+TGG 0.339439 2_3:-3956917 Msa0272410:three_prime_UTR
TTCCTCTGCTGGGCCGTTAG+AGG 0.340463 2_3:+3957150 None:intergenic
CACAAGTAATCGACCTTTAT+AGG 0.345031 2_3:-3956774 Msa0272410:three_prime_UTR
AACGATAACGGAAACGGTTA+TGG 0.352071 2_3:-3960350 Msa0272410:CDS
CTCCTTCTCCTCTAGCTCAA+TGG 0.361178 2_3:+3957751 None:intergenic
TCTGTGGGTTTGCCGGGCTT+AGG 0.365337 2_3:+3957352 None:intergenic
AGCTAGAGGAGAAGGAGAAA+AGG 0.369546 2_3:-3957745 Msa0272410:CDS
CGACCAAAACATGCCTATAA+AGG 0.369990 2_3:+3956761 None:intergenic
ATTGGAGTAACCACCGTAAC+CGG 0.372444 2_3:+3960499 None:intergenic
CTGTGGGTTTGCCGGGCTTA+GGG 0.379243 2_3:+3957353 None:intergenic
CCGTTAGAGGCCACATCCTT+TGG 0.394016 2_3:+3957163 None:intergenic
CTTTCTGGGGTTCCTCTGCT+GGG 0.395967 2_3:+3957140 None:intergenic
CTCTCCTTCTCCGTTTGAAT+CGG 0.398479 2_3:-3960390 Msa0272410:CDS
GCAAACCCACAGATCTTTCC+AGG 0.408467 2_3:-3957342 Msa0272410:CDS
TGTTTCTCTCTCTAGAAATT+CGG 0.411241 2_3:+3960623 None:intergenic
GAAAGATCTGTGGGTTTGCC+GGG 0.421847 2_3:+3957346 None:intergenic
GAATCGGTTACTGTAGAAAA+CGG 0.424815 2_3:-3960374 Msa0272410:CDS
AATGTGCTAATGGCTTTGTT+TGG 0.424986 2_3:+3960670 None:intergenic
CAATGCAACCAATAAGCATT+AGG 0.426186 2_3:+3956992 None:intergenic
GATCAAGACGACACCTTCTC+CGG 0.433643 2_3:-3960518 Msa0272410:CDS
GCTAGAGGAGAAGGAGAAAA+GGG 0.438393 2_3:-3957744 Msa0272410:CDS
GACGACACCTTCTCCGGTTA+CGG 0.443450 2_3:-3960512 Msa0272410:CDS
TTCATTAAAACCTTTAATGC+AGG 0.445948 2_3:+3956964 None:intergenic
TCAGCAGCTGAAGGTGCATC+AGG 0.447568 2_3:-3957193 Msa0272410:CDS
TGACACTTGGAAAATATATC+AGG 0.453246 2_3:+3956840 None:intergenic
CTTGTGTTATAGACAATGAC+TGG 0.454759 2_3:+3956791 None:intergenic
GAAGATTATTGAGGAGGCTG+AGG 0.457014 2_3:-3957705 Msa0272410:CDS
TCTTTAGCAGGAGCAGGTGG+TGG 0.458003 2_3:+3957265 None:intergenic
AATGAAATGAAATGTGCTAA+TGG 0.463790 2_3:+3960660 None:intergenic
TAGCAGTATTTGTCGCATCC+TGG 0.466048 2_3:+3957324 None:intergenic
AATCGGTTACTGTAGAAAAC+GGG 0.471773 2_3:-3960373 Msa0272410:CDS
ACAAGGTTCAAAATAGAGAA+AGG 0.472036 2_3:-3957634 Msa0272410:CDS
CCTTCCTCCACCTGGTGAGA+TGG 0.476417 2_3:-3960291 Msa0272410:CDS
AGAAGGAGAGTAACCAGGAT+TGG 0.477559 2_3:+3960403 None:intergenic
GCGTCTTTAGCATCTTTAGC+AGG 0.478410 2_3:+3957253 None:intergenic
TTAGCATCTTTAGCAGGAGC+AGG 0.482630 2_3:+3957259 None:intergenic
GAAGGAGAGTAACCAGGATT+GGG 0.484433 2_3:+3960404 None:intergenic
GTAGAAAACGGGAACGATAA+CGG 0.485632 2_3:-3960362 Msa0272410:CDS
GGTCCGATCCTTCCTCCACC+TGG 0.491267 2_3:-3960299 Msa0272410:CDS
AGGTGGCTTTCTATGAGAAA+AGG 0.491336 2_3:-3957676 Msa0272410:CDS
AATGCGATTGAAGATTATTG+AGG 0.496048 2_3:-3957714 Msa0272410:CDS
CTTTAGCAGGAGCAGGTGGT+GGG 0.504213 2_3:+3957266 None:intergenic
TTAGCAGGAGCAGGTGGTGG+GGG 0.510264 2_3:+3957268 None:intergenic
GTCGCAGAGGCTTCTTTCTG+GGG 0.515607 2_3:+3957127 None:intergenic
TGCCATTGAGCTAGAGGAGA+AGG 0.516040 2_3:-3957753 Msa0272410:CDS
GGATTCAGTGATCCCAATCC+TGG 0.519749 2_3:-3960416 Msa0272410:CDS
GTTGTCCAAGGCCCTAAGCC+CGG 0.522136 2_3:-3957364 Msa0272410:CDS
CAAGGTTCAAAATAGAGAAA+GGG 0.525223 2_3:-3957633 Msa0272410:CDS
AAGGTTACGCTCTTCGTGAA+TGG 0.527926 2_3:-3960259 Msa0272410:CDS
TCACTGAATCCGTAGATCTC+CGG 0.530021 2_3:+3960428 None:intergenic
ACGAGGCAAAATTATGCAGC+AGG 0.532050 2_3:+3957094 None:intergenic
GTCGTCAGTGAAAGCGTCGA+AGG 0.533146 2_3:+3960583 None:intergenic
TCTACAGTAACCGATTCAAA+CGG 0.534276 2_3:+3960380 None:intergenic
CCTTGGACAACAGTGATTGA+CGG 0.539024 2_3:+3957376 None:intergenic
TCGCATCCTGGAAAGATCTG+TGG 0.539524 2_3:+3957336 None:intergenic
GAAAGAAGCCTCTGCGACCG+AGG 0.541513 2_3:-3957122 Msa0272410:CDS
CGCATCCTGGAAAGATCTGT+GGG 0.542779 2_3:+3957337 None:intergenic
GAACTTATTAAGAGGGAAGC+TGG 0.544539 2_3:-3956739 Msa0272410:three_prime_UTR
GGAGAAGGTGTCGTCTTGAT+CGG 0.546309 2_3:+3960520 None:intergenic
TCAAGAGAAGTTTCACAAAG+AGG 0.547541 2_3:-3957494 Msa0272410:CDS
AATGGAGACTCAGCAACTCA+TGG 0.549948 2_3:+3956715 None:intergenic
GACGTGAAGTTCAGTGCTGT+TGG 0.550763 2_3:+3960692 None:intergenic
TTTAGCAGGAGCAGGTGGTG+GGG 0.553305 2_3:+3957267 None:intergenic
ACGCTCTTCGTGAATGGCGC+CGG 0.553734 2_3:-3960253 Msa0272410:intron
AACGGGAACGATAACGGAAA+CGG 0.554690 2_3:-3960356 Msa0272410:CDS
CCAAAGGATGTGGCCTCTAA+CGG 0.555585 2_3:-3957163 Msa0272410:CDS
CCATCTCACCAGGTGGAGGA+AGG 0.556654 2_3:+3960291 None:intergenic
GACTCCATCTCACCAGGTGG+AGG 0.561037 2_3:+3960287 None:intergenic
CGCCGCTGAAACTACTTCAC+CGG 0.562245 2_3:-3960447 Msa0272410:CDS
GATGCTAAAGACGCAAAGGA+TGG 0.566024 2_3:-3957244 Msa0272410:CDS
TCAAAATAGAGAAAGGGAGA+AGG 0.567942 2_3:-3957627 Msa0272410:intron
GGCAAAATTATGCAGCAGGT+TGG 0.569456 2_3:+3957098 None:intergenic
TCAAAATGCCATTGAGCTAG+AGG 0.570686 2_3:-3957759 Msa0272410:CDS
CCGTCAATCACTGTTGTCCA+AGG 0.577884 2_3:-3957376 Msa0272410:CDS
ACTACTTCACCGGAGATCTA+CGG 0.578559 2_3:-3960437 Msa0272410:CDS
GGTGAGATGGAGTCGGAGGA+AGG 0.580041 2_3:-3960278 Msa0272410:CDS
GGTGGTTACTCCAATTTCGA+CGG 0.586145 2_3:-3960491 Msa0272410:CDS
GCATCTTTAGCAGGAGCAGG+TGG 0.590565 2_3:+3957262 None:intergenic
TTTGGTCGAACTTATTAAGA+GGG 0.591202 2_3:-3956746 Msa0272410:three_prime_UTR
TCAATGTTGGCAACCTCACG+AGG 0.591611 2_3:+3957433 None:intergenic
AGGTTGCCAACATTGAAAAG+AGG 0.596082 2_3:-3957426 Msa0272410:CDS
GGTGTCGTCTTGATCGGAGG+CGG 0.596468 2_3:+3960526 None:intergenic
TCACCAGGTGGAGGAAGGAT+CGG 0.597105 2_3:+3960296 None:intergenic
GCAGTGTTCAATGAATCTCT+TGG 0.598486 2_3:-3957029 Msa0272410:three_prime_UTR
GGCCTCTAACGGCCCAGCAG+AGG 0.599204 2_3:-3957152 Msa0272410:CDS
AGGATCACAACCAAAGGATG+TGG 0.599390 2_3:-3957173 Msa0272410:CDS
TCAGACAAATGATTGAGAGA+AGG 0.599585 2_3:+3957069 None:intergenic
TGCAGAGCTCATTCCTCGTG+AGG 0.599727 2_3:-3957446 Msa0272410:CDS
GCGATTGAAGATTATTGAGG+AGG 0.599831 2_3:-3957711 Msa0272410:CDS
TCGGAGGCGGCGAAGTTGTG+AGG 0.600626 2_3:+3960539 None:intergenic
GTAACCACCGTAACCGGAGA+AGG 0.602987 2_3:+3960505 None:intergenic
TCCTCCGACTCCATCTCACC+AGG 0.604179 2_3:+3960281 None:intergenic
GTAACTGGGTCAGCAGCTGA+AGG 0.610261 2_3:-3957202 Msa0272410:CDS
TGCATCAGGATCACAACCAA+AGG 0.610972 2_3:-3957179 Msa0272410:CDS
TCCACCTGGTGAGATGGAGT+CGG 0.612364 2_3:-3960285 Msa0272410:CDS
ACCTGGTGAGATGGAGTCGG+AGG 0.613781 2_3:-3960282 Msa0272410:CDS
GACACCTTCTCCGGTTACGG+TGG 0.615312 2_3:-3960509 Msa0272410:CDS
TAAAGATGCTAAAGACGCAA+AGG 0.617813 2_3:-3957248 Msa0272410:CDS
TTATGCAGCAGGTTGGTCCT+CGG 0.620437 2_3:+3957105 None:intergenic
GAAGGTGTCGTCTTGATCGG+AGG 0.622038 2_3:+3960523 None:intergenic
CTCCGGTGAAGTAGTTTCAG+CGG 0.641225 2_3:+3960445 None:intergenic
AACGGAGAAGGAGAGTAACC+AGG 0.644232 2_3:+3960398 None:intergenic
TCCGACTCCATCTCACCAGG+TGG 0.644893 2_3:+3960284 None:intergenic
TTCAGCGGCGGAGTGATCGA+CGG 0.648198 2_3:+3960460 None:intergenic
GCCAACATTGAAAAGAGGAG+AGG 0.649076 2_3:-3957421 Msa0272410:CDS
AGGTTGGTCCTCGGTCGCAG+AGG 0.650661 2_3:+3957114 None:intergenic
TTGTGTTATAGACAATGACT+GGG 0.658073 2_3:+3956792 None:intergenic
CGGTGAAGTAGTTTCAGCGG+CGG 0.659180 2_3:+3960448 None:intergenic
AAACATCATCTAAAGTAACT+GGG 0.661612 2_3:-3957216 Msa0272410:CDS
GCTTAATGTTGAGACTAACA+AGG 0.677288 2_3:-3957651 Msa0272410:CDS
GTAACCGATTCAAACGGAGA+AGG 0.683900 2_3:+3960386 None:intergenic
GGAGGCTGAGGAGTATAAGG+TGG 0.692623 2_3:-3957693 Msa0272410:CDS
ATGATTGAGAGAAGGAAACG+AGG 0.694344 2_3:+3957077 None:intergenic
AACGGTTATGGTGATGATGA+CGG 0.705580 2_3:-3960338 Msa0272410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTGATATTTTACTTA+TGG - chr2_3:3957560-3957579 Msa0272410:intron 10.0%
!!! TTTTTAGAAAAAATAGATTT+TGG - chr2_3:3958101-3958120 Msa0272410:intron 10.0%
!!! GTTCAAATTAAACATTTTTT+AGG - chr2_3:3957738-3957757 Msa0272410:CDS 15.0%
!!! ATATTTAAGGTAACATTATT+GGG - chr2_3:3957863-3957882 Msa0272410:intron 15.0%
!!! ATCTATTTTTTCTAAAAACA+AGG + chr2_3:3958099-3958118 None:intergenic 15.0%
!!! GTTTTTATAATAGATAATCA+TGG - chr2_3:3958301-3958320 Msa0272410:intron 15.0%
!!! TGGATTTAACTTAATAATAA+AGG - chr2_3:3958750-3958769 Msa0272410:intron 15.0%
!!! GGATTTAACTTAATAATAAA+GGG - chr2_3:3958751-3958770 Msa0272410:intron 15.0%
!!! AAATTCATTTTTTTAACCAT+AGG + chr2_3:3958983-3959002 None:intergenic 15.0%
!! AAATATTTATATTAATGGCA+AGG - chr2_3:3959090-3959109 Msa0272410:intron 15.0%
!! TATAAATTGAAATTTGTCTA+TGG - chr2_3:3959881-3959900 Msa0272410:intron 15.0%
!! AGTAATTAGGATTATGAATT+AGG - chr2_3:3957293-3957312 Msa0272410:CDS 20.0%
!! AATTAGTAAAATTCTATGCT+AGG - chr2_3:3957461-3957480 Msa0272410:CDS 20.0%
!! ATTAGTAAAATTCTATGCTA+GGG - chr2_3:3957462-3957481 Msa0272410:CDS 20.0%
!! TTGAATTTGTAATATGAAAG+AGG - chr2_3:3957537-3957556 Msa0272410:intron 20.0%
!!! TGATATTTTACTTATGGTAA+TGG - chr2_3:3957566-3957585 Msa0272410:intron 20.0%
!!! TAATTTGTATGTTAACCAAA+GGG - chr2_3:3957794-3957813 Msa0272410:intron 20.0%
!!! CATATTTAAGGTAACATTAT+TGG - chr2_3:3957862-3957881 Msa0272410:intron 20.0%
!!! AGTAATAACTTTTCATTTTG+AGG - chr2_3:3958134-3958153 Msa0272410:intron 20.0%
!! CACTATTAGAATAATAAAAG+TGG - chr2_3:3958206-3958225 Msa0272410:intron 20.0%
!!! GAATAATAAAAGTGGTTTTT+TGG - chr2_3:3958214-3958233 Msa0272410:intron 20.0%
!!! AAAAAAGCATTGATCTTATA+TGG - chr2_3:3958827-3958846 Msa0272410:intron 20.0%
!! AAAATTGACTAGAAATAGTA+GGG + chr2_3:3958894-3958913 None:intergenic 20.0%
!! TACATAAAAAATTGATCACA+CGG + chr2_3:3959026-3959045 None:intergenic 20.0%
!! CAAGTAACAATACAAAAATT+AGG - chr2_3:3959050-3959069 Msa0272410:intron 20.0%
!!! GAAACATTTATGTATTTTGT+TGG - chr2_3:3959127-3959146 Msa0272410:intron 20.0%
!!! CTATTATTTTAGGTTGTAAT+AGG + chr2_3:3959218-3959237 None:intergenic 20.0%
!! CTATTACAACCTAAAATAAT+AGG - chr2_3:3959216-3959235 Msa0272410:intron 20.0%
!! TAACAGGAATTTATAACAAT+AGG + chr2_3:3959281-3959300 None:intergenic 20.0%
!! TATAAATTCCTGTTACAATA+AGG - chr2_3:3959286-3959305 Msa0272410:intron 20.0%
!! ATAAATTCCTGTTACAATAA+GGG - chr2_3:3959287-3959306 Msa0272410:intron 20.0%
!! ATCCATTATGTGTTTATTAT+GGG - chr2_3:3959318-3959337 Msa0272410:intron 20.0%
!!! ATTACCAGCATTAAATTTTT+TGG + chr2_3:3959473-3959492 None:intergenic 20.0%
!!! TTTTAGTCCAATAAAGATTT+AGG - chr2_3:3959569-3959588 Msa0272410:intron 20.0%
!! AAAAAGATAAATCAAAATGC+TGG + chr2_3:3959825-3959844 None:intergenic 20.0%
! AATGAAATGAAATGTGCTAA+TGG + chr2_3:3956760-3956779 None:intergenic 25.0%
! AACTTCATAATCGAATTTCT+AGG + chr2_3:3957257-3957276 None:intergenic 25.0%
!!! TTCGATTATGAAGTTTTTTG+CGG - chr2_3:3957262-3957281 Msa0272410:CDS 25.0%
!!! AGGAATTGATTTGTATATAC+TGG - chr2_3:3957485-3957504 Msa0272410:CDS 25.0%
!! GTAATTTGTATGTTAACCAA+AGG - chr2_3:3957793-3957812 Msa0272410:intron 25.0%
! TCTAGCAATTTACAAAAAAC+TGG - chr2_3:3957919-3957938 Msa0272410:intron 25.0%
! CTAGCAATTTACAAAAAACT+GGG - chr2_3:3957920-3957939 Msa0272410:intron 25.0%
! ATTTAAGAAATGTGTTCAAG+AGG + chr2_3:3957979-3957998 None:intergenic 25.0%
! TATCTATTATAAAAACCCAC+TGG + chr2_3:3958297-3958316 None:intergenic 25.0%
!! ATTTAGGGAAAGTATAAACA+TGG + chr2_3:3958545-3958564 None:intergenic 25.0%
!! TAAAACAGACAAGGTATTTA+GGG + chr2_3:3958560-3958579 None:intergenic 25.0%
!! TCTGTTTTACATTGAGATAA+AGG - chr2_3:3958571-3958590 Msa0272410:intron 25.0%
!! CTGTTTTACATTGAGATAAA+GGG - chr2_3:3958572-3958591 Msa0272410:intron 25.0%
!!! CTTAATAATAAAGGGTGTTT+CGG - chr2_3:3958759-3958778 Msa0272410:intron 25.0%
! GAAAATTGACTAGAAATAGT+AGG + chr2_3:3958895-3958914 None:intergenic 25.0%
!!! GTGTGATCAATTTTTTATGT+AGG - chr2_3:3959025-3959044 Msa0272410:intron 25.0%
!! GAACTCTAAACATTTTATCT+AGG + chr2_3:3959155-3959174 None:intergenic 25.0%
! GATCCATTATGTGTTTATTA+TGG - chr2_3:3959317-3959336 Msa0272410:intron 25.0%
! AATTATCTTGTATTTGCAAG+AGG - chr2_3:3959342-3959361 Msa0272410:intron 25.0%
! AATAGCTCCTAAATCTTTAT+TGG + chr2_3:3959579-3959598 None:intergenic 25.0%
!! AAACATCATCTAAAGTAACT+GGG - chr2_3:3960201-3960220 Msa0272410:intron 25.0%
! TATTAGTTCCTAATGCTTAT+TGG - chr2_3:3960417-3960436 Msa0272410:CDS 25.0%
! TTCATTAAAACCTTTAATGC+AGG + chr2_3:3960456-3960475 None:intergenic 25.0%
! TGTTTCTCTCTCTAGAAATT+CGG + chr2_3:3956797-3956816 None:intergenic 30.0%
TCCAACAAAATTCAACTTAC+CGG + chr2_3:3957186-3957205 None:intergenic 30.0%
! TGCGGTTTTTGTAAGTAATT+AGG - chr2_3:3957280-3957299 Msa0272410:CDS 30.0%
!! TTACTTATGGTAATGGAAGT+TGG - chr2_3:3957573-3957592 Msa0272410:intron 30.0%
TTGCACTTAGATTTCAATCT+TGG - chr2_3:3957656-3957675 Msa0272410:CDS 30.0%
CGTTACATGTAGAAAAATCT+CGG - chr2_3:3957716-3957735 Msa0272410:CDS 30.0%
! AAGGTAACATTATTGGGTTT+TGG - chr2_3:3957869-3957888 Msa0272410:intron 30.0%
GGTCATAATAAATCTTGATG+AGG - chr2_3:3957941-3957960 Msa0272410:intron 30.0%
TAAATTACATCAGAGGAAGA+GGG + chr2_3:3958366-3958385 None:intergenic 30.0%
ATTTACAGAGCGATAGATAT+TGG - chr2_3:3958381-3958400 Msa0272410:intron 30.0%
TGTTACTAGATGTTATAAGC+AGG - chr2_3:3958488-3958507 Msa0272410:intron 30.0%
! GAAAGTATAAACATGGATAG+GGG + chr2_3:3958538-3958557 None:intergenic 30.0%
! GGAAAGTATAAACATGGATA+GGG + chr2_3:3958539-3958558 None:intergenic 30.0%
! GTAAAACAGACAAGGTATTT+AGG + chr2_3:3958561-3958580 None:intergenic 30.0%
ATCTCAATGTAAAACAGACA+AGG + chr2_3:3958569-3958588 None:intergenic 30.0%
CATAAAGATCGTGTTGAAAA+AGG + chr2_3:3958643-3958662 None:intergenic 30.0%
!!! CTTTTTCAACACGATCTTTA+TGG - chr2_3:3958641-3958660 Msa0272410:intron 30.0%
ATAGTTTAATGAGACTTGCA+TGG - chr2_3:3958730-3958749 Msa0272410:intron 30.0%
AATAGTGTGTTGAAGATTGT+TGG - chr2_3:3958782-3958801 Msa0272410:intron 30.0%
!! TCGCATTGACCTATTATTTT+AGG + chr2_3:3959228-3959247 None:intergenic 30.0%
TGCCCATAATAAACACATAA+TGG + chr2_3:3959323-3959342 None:intergenic 30.0%
TTTGAACCAGTGATTTCATA+CGG - chr2_3:3959377-3959396 Msa0272410:intron 30.0%
TGAGCCAAAAAATTTAATGC+TGG - chr2_3:3959466-3959485 Msa0272410:intron 30.0%
CCTCTAATAACTTTACAAAC+AGG + chr2_3:3959504-3959523 None:intergenic 30.0%
CCTGTTTGTAAAGTTATTAG+AGG - chr2_3:3959501-3959520 Msa0272410:intron 30.0%
AATGCGATTGAAGATTATTG+AGG - chr2_3:3959703-3959722 Msa0272410:intron 30.0%
ACAAGGTTCAAAATAGAGAA+AGG - chr2_3:3959783-3959802 Msa0272410:intron 30.0%
CAAGGTTCAAAATAGAGAAA+GGG - chr2_3:3959784-3959803 Msa0272410:intron 30.0%
! GAAACATCATCTAAAGTAAC+TGG - chr2_3:3960200-3960219 Msa0272410:intron 30.0%
TGACACTTGGAAAATATATC+AGG + chr2_3:3960580-3960599 None:intergenic 30.0%
TTGTGTTATAGACAATGACT+GGG + chr2_3:3960628-3960647 None:intergenic 30.0%
! TTTTGGTCGAACTTATTAAG+AGG - chr2_3:3960670-3960689 Msa0272410:five_prime_UTR 30.0%
TTTGGTCGAACTTATTAAGA+GGG - chr2_3:3960671-3960690 Msa0272410:five_prime_UTR 30.0%
!! AATGTGCTAATGGCTTTGTT+TGG + chr2_3:3956750-3956769 None:intergenic 35.0%
! TCTACAGTAACCGATTCAAA+CGG + chr2_3:3957040-3957059 None:intergenic 35.0%
GAATCGGTTACTGTAGAAAA+CGG - chr2_3:3957043-3957062 Msa0272410:three_prime_UTR 35.0%
AATCGGTTACTGTAGAAAAC+GGG - chr2_3:3957044-3957063 Msa0272410:three_prime_UTR 35.0%
! TGCTATTGCGATTTTACTTG+TGG - chr2_3:3957391-3957410 Msa0272410:CDS 35.0%
AGTAAAATTCTATGCTAGGG+AGG - chr2_3:3957465-3957484 Msa0272410:CDS 35.0%
!! ACTGGTATCAAGAGTATCTT+TGG - chr2_3:3957503-3957522 Msa0272410:CDS 35.0%
!! CTGGTATCAAGAGTATCTTT+GGG - chr2_3:3957504-3957523 Msa0272410:CDS 35.0%
ATTCGTTAGGGTAAATTCCA+TGG - chr2_3:3957610-3957629 Msa0272410:intron 35.0%
GGATTGGATGGTCATATTTA+AGG - chr2_3:3957850-3957869 Msa0272410:intron 35.0%
!! TTCCGAGTTCTCTAAGATTT+AGG - chr2_3:3958035-3958054 Msa0272410:intron 35.0%
!! TCCGAGTTCTCTAAGATTTA+GGG - chr2_3:3958036-3958055 Msa0272410:intron 35.0%
ACCCTAAATCTTAGAGAACT+CGG + chr2_3:3958040-3958059 None:intergenic 35.0%
! GACTAAGGGTTCATTTGTTT+TGG + chr2_3:3958275-3958294 None:intergenic 35.0%
ATAAAAACCCACTGGACTAA+GGG + chr2_3:3958289-3958308 None:intergenic 35.0%
TATAAAAACCCACTGGACTA+AGG + chr2_3:3958290-3958309 None:intergenic 35.0%
GTAAATTACATCAGAGGAAG+AGG + chr2_3:3958367-3958386 None:intergenic 35.0%
CGATAGATATTGGACAAATC+TGG - chr2_3:3958391-3958410 Msa0272410:intron 35.0%
ATGTTATAAGCAGGTCTTCA+TGG - chr2_3:3958497-3958516 Msa0272410:intron 35.0%
! GGGAAAGTATAAACATGGAT+AGG + chr2_3:3958540-3958559 None:intergenic 35.0%
CTCACTGTATAAATCGTGAA+GGG + chr2_3:3958603-3958622 None:intergenic 35.0%
TCTCACTGTATAAATCGTGA+AGG + chr2_3:3958604-3958623 None:intergenic 35.0%
TCAACACGATCTTTATGGTT+AGG - chr2_3:3958646-3958665 Msa0272410:intron 35.0%
CAACACGATCTTTATGGTTA+GGG - chr2_3:3958647-3958666 Msa0272410:intron 35.0%
AACACGATCTTTATGGTTAG+GGG - chr2_3:3958648-3958667 Msa0272410:intron 35.0%
ATCAAACAGATGAGCAATCA+AGG + chr2_3:3958917-3958936 None:intergenic 35.0%
AGTCATAGCATAGTTAACGT+AGG - chr2_3:3959251-3959270 Msa0272410:intron 35.0%
GTCATAGCATAGTTAACGTA+GGG - chr2_3:3959252-3959271 Msa0272410:intron 35.0%
CATGACACAATGAATGTCTT+TGG - chr2_3:3959621-3959640 Msa0272410:intron 35.0%
!!! AATGGCATTTTGACTGTACA+AGG + chr2_3:3959651-3959670 None:intergenic 35.0%
GCTTAATGTTGAGACTAACA+AGG - chr2_3:3959766-3959785 Msa0272410:intron 35.0%
TCAAAATAGAGAAAGGGAGA+AGG - chr2_3:3959790-3959809 Msa0272410:intron 35.0%
TCAAGAGAAGTTTCACAAAG+AGG - chr2_3:3959923-3959942 Msa0272410:intron 35.0%
TAAAGATGCTAAAGACGCAA+AGG - chr2_3:3960169-3960188 Msa0272410:intron 35.0%
TCAGACAAATGATTGAGAGA+AGG + chr2_3:3960351-3960370 None:intergenic 35.0%
CAATGCAACCAATAAGCATT+AGG + chr2_3:3960428-3960447 None:intergenic 35.0%
CATTGTAGTACCTGCATTAA+AGG - chr2_3:3960443-3960462 Msa0272410:CDS 35.0%
ACATGTAGATTCAGTGTTCA+TGG - chr2_3:3960500-3960519 Msa0272410:CDS 35.0%
!!! TCATGAGATTGCTGACTTTT+TGG - chr2_3:3960552-3960571 Msa0272410:CDS 35.0%
!!! CATGAGATTGCTGACTTTTT+GGG - chr2_3:3960553-3960572 Msa0272410:CDS 35.0%
CCAATAGAAAAACTGACACT+TGG + chr2_3:3960593-3960612 None:intergenic 35.0%
! CCAAGTGTCAGTTTTTCTAT+TGG - chr2_3:3960590-3960609 Msa0272410:CDS 35.0%
CTTGTGTTATAGACAATGAC+TGG + chr2_3:3960629-3960648 None:intergenic 35.0%
CACAAGTAATCGACCTTTAT+AGG - chr2_3:3960643-3960662 Msa0272410:five_prime_UTR 35.0%
GTAGAAAACGGGAACGATAA+CGG - chr2_3:3957055-3957074 Msa0272410:three_prime_UTR 40.0%
!! AACGATAACGGAAACGGTTA+TGG - chr2_3:3957067-3957086 Msa0272410:three_prime_UTR 40.0%
! AACGGTTATGGTGATGATGA+CGG - chr2_3:3957079-3957098 Msa0272410:three_prime_UTR 40.0%
!!! GACGGTGTTTTTGTTTCTGA+TGG - chr2_3:3957097-3957116 Msa0272410:exon 40.0%
!! GCCGGTAAGTTGAATTTTGT+TGG - chr2_3:3957182-3957201 Msa0272410:CDS 40.0%
!! GTATCAAGAGTATCTTTGGG+TGG - chr2_3:3957507-3957526 Msa0272410:CDS 40.0%
! CCATAATCTTTTCTGTGCCA+TGG + chr2_3:3957630-3957649 None:intergenic 40.0%
CCATGGCACAGAAAAGATTA+TGG - chr2_3:3957627-3957646 Msa0272410:intron 40.0%
TGGCACAGAAAAGATTATGG+TGG - chr2_3:3957630-3957649 Msa0272410:CDS 40.0%
CTACATGTAACGATCGAACT+CGG + chr2_3:3957708-3957727 None:intergenic 40.0%
GCGTGTACTGTTCACTTTAT+TGG - chr2_3:3957767-3957786 Msa0272410:intron 40.0%
CAATCCAGCTTCAAATAGCA+AGG + chr2_3:3957836-3957855 None:intergenic 40.0%
!! CTTGCTATTTGAAGCTGGAT+TGG - chr2_3:3957834-3957853 Msa0272410:intron 40.0%
! CTATTTGAAGCTGGATTGGA+TGG - chr2_3:3957838-3957857 Msa0272410:intron 40.0%
AGACAGATCCAAGTTCAACA+GGG + chr2_3:3957902-3957921 None:intergenic 40.0%
TAGACAGATCCAAGTTCAAC+AGG + chr2_3:3957903-3957922 None:intergenic 40.0%
AAATGAACCCTTAGTCCAGT+GGG - chr2_3:3958279-3958298 Msa0272410:intron 40.0%
CGCTCTGTAAATTACATCAG+AGG + chr2_3:3958373-3958392 None:intergenic 40.0%
GATAGGGGAGGAATATGTTA+GGG + chr2_3:3958523-3958542 None:intergenic 40.0%
AGTATAAACATGGATAGGGG+AGG + chr2_3:3958535-3958554 None:intergenic 40.0%
TTCTTGAGTTTCCCTGGATA+AGG - chr2_3:3958674-3958693 Msa0272410:intron 40.0%
!! GGTAAAGTGTTGTGACTGTA+AGG + chr2_3:3958873-3958892 None:intergenic 40.0%
TTAACCATAGGACAGTTGCT+CGG + chr2_3:3958971-3958990 None:intergenic 40.0%
TGGCAAGGTTCATGCTTATT+AGG - chr2_3:3959105-3959124 Msa0272410:intron 40.0%
! CTGTTACAATAAGGGAGCAT+GGG - chr2_3:3959295-3959314 Msa0272410:intron 40.0%
ACTAGTGTGAAGAGAAGCTT+TGG + chr2_3:3959423-3959442 None:intergenic 40.0%
!!! GCATTTTGACTGTACAAGGA+AGG + chr2_3:3959647-3959666 None:intergenic 40.0%
TCAAAATGCCATTGAGCTAG+AGG - chr2_3:3959658-3959677 Msa0272410:intron 40.0%
GCGATTGAAGATTATTGAGG+AGG - chr2_3:3959706-3959725 Msa0272410:intron 40.0%
AGGTGGCTTTCTATGAGAAA+AGG - chr2_3:3959741-3959760 Msa0272410:intron 40.0%
AATAGAGAAAGGGAGAAGGT+AGG - chr2_3:3959794-3959813 Msa0272410:intron 40.0%
AAGAGGCAGACAAAGCTTAT+TGG - chr2_3:3959940-3959959 Msa0272410:intron 40.0%
AGGTTGCCAACATTGAAAAG+AGG - chr2_3:3959991-3960010 Msa0272410:intron 40.0%
ATGATTGAGAGAAGGAAACG+AGG + chr2_3:3960343-3960362 None:intergenic 40.0%
GAACACTGCATGTGCAAAAA+GGG + chr2_3:3960377-3960396 None:intergenic 40.0%
TGAACACTGCATGTGCAAAA+AGG + chr2_3:3960378-3960397 None:intergenic 40.0%
GCAGTGTTCAATGAATCTCT+TGG - chr2_3:3960388-3960407 Msa0272410:CDS 40.0%
! CGACCTTTATAGGCATGTTT+TGG - chr2_3:3960653-3960672 Msa0272410:five_prime_UTR 40.0%
CGACCAAAACATGCCTATAA+AGG + chr2_3:3960659-3960678 None:intergenic 40.0%
GAACTTATTAAGAGGGAAGC+TGG - chr2_3:3960678-3960697 Msa0272410:five_prime_UTR 40.0%
ATTGGAGTAACCACCGTAAC+CGG + chr2_3:3956921-3956940 None:intergenic 45.0%
GGTGGTTACTCCAATTTCGA+CGG - chr2_3:3956926-3956945 Msa0272410:three_prime_UTR 45.0%
ACTACTTCACCGGAGATCTA+CGG - chr2_3:3956980-3956999 Msa0272410:three_prime_UTR 45.0%
TCACTGAATCCGTAGATCTC+CGG + chr2_3:3956992-3957011 None:intergenic 45.0%
GAAGGAGAGTAACCAGGATT+GGG + chr2_3:3957016-3957035 None:intergenic 45.0%
AGAAGGAGAGTAACCAGGAT+TGG + chr2_3:3957017-3957036 None:intergenic 45.0%
CTCTCCTTCTCCGTTTGAAT+CGG - chr2_3:3957027-3957046 Msa0272410:three_prime_UTR 45.0%
! GTAACCGATTCAAACGGAGA+AGG + chr2_3:3957034-3957053 None:intergenic 45.0%
!! AACGGGAACGATAACGGAAA+CGG - chr2_3:3957061-3957080 Msa0272410:three_prime_UTR 45.0%
AAGGTTACGCTCTTCGTGAA+TGG - chr2_3:3957158-3957177 Msa0272410:CDS 45.0%
!! GGTAATGGAAGTTGGATCTG+CGG - chr2_3:3957581-3957600 Msa0272410:intron 45.0%
GTCACGTAATGACTACCCTT+TGG + chr2_3:3957812-3957831 None:intergenic 45.0%
GATATCTCCCCTGTTGAACT+TGG - chr2_3:3957891-3957910 Msa0272410:intron 45.0%
GACAGATCCAAGTTCAACAG+GGG + chr2_3:3957901-3957920 None:intergenic 45.0%
CAAATGAACCCTTAGTCCAG+TGG - chr2_3:3958278-3958297 Msa0272410:intron 45.0%
GGATAGGGGAGGAATATGTT+AGG + chr2_3:3958524-3958543 None:intergenic 45.0%
GGGAAATTCTTGAGTTTCCC+TGG - chr2_3:3958668-3958687 Msa0272410:intron 45.0%
AGTTTCCCTGGATAAGGAGT+AGG - chr2_3:3958680-3958699 Msa0272410:intron 45.0%
GTTTCCCTGGATAAGGAGTA+GGG - chr2_3:3958681-3958700 Msa0272410:intron 45.0%
CCATGCTCCCTTATTGTAAC+AGG + chr2_3:3959297-3959316 None:intergenic 45.0%
CCTGTTACAATAAGGGAGCA+TGG - chr2_3:3959294-3959313 Msa0272410:intron 45.0%
TTGCTGCCGTATGAAATCAC+TGG + chr2_3:3959386-3959405 None:intergenic 45.0%
!! GAAGAGAAGCTTTGGAGCAA+TGG + chr2_3:3959415-3959434 None:intergenic 45.0%
AGCTAGAGGAGAAGGAGAAA+AGG - chr2_3:3959672-3959691 Msa0272410:intron 45.0%
GCTAGAGGAGAAGGAGAAAA+GGG - chr2_3:3959673-3959692 Msa0272410:intron 45.0%
GAAGATTATTGAGGAGGCTG+AGG - chr2_3:3959712-3959731 Msa0272410:intron 45.0%
GCCAACATTGAAAAGAGGAG+AGG - chr2_3:3959996-3960015 Msa0272410:intron 45.0%
! GCCTCTCCTCTTTTCAATGT+TGG + chr2_3:3960000-3960019 None:intergenic 45.0%
GAGGAGAGGCAAAAAAGATC+AGG - chr2_3:3960010-3960029 Msa0272410:intron 45.0%
CCTTGGACAACAGTGATTGA+CGG + chr2_3:3960044-3960063 None:intergenic 45.0%
TAGCAGTATTTGTCGCATCC+TGG + chr2_3:3960096-3960115 None:intergenic 45.0%
TTAGCATCTTTAGCAGGAGC+AGG + chr2_3:3960161-3960180 None:intergenic 45.0%
GCGTCTTTAGCATCTTTAGC+AGG + chr2_3:3960167-3960186 None:intergenic 45.0%
GATGCTAAAGACGCAAAGGA+TGG - chr2_3:3960173-3960192 Msa0272410:intron 45.0%
TGCATCAGGATCACAACCAA+AGG - chr2_3:3960238-3960257 Msa0272410:intron 45.0%
AGGATCACAACCAAAGGATG+TGG - chr2_3:3960244-3960263 Msa0272410:intron 45.0%
GGCAAAATTATGCAGCAGGT+TGG + chr2_3:3960322-3960341 None:intergenic 45.0%
ACGAGGCAAAATTATGCAGC+AGG + chr2_3:3960326-3960345 None:intergenic 45.0%
!! ATATGAAATATTTATATTAA+TGG - chr2_3:3959085-3959104 Msa0272410:intron 5.0%
GACGTGAAGTTCAGTGCTGT+TGG + chr2_3:3956728-3956747 None:intergenic 50.0%
!! GGAGAAGGTGTCGTCTTGAT+CGG + chr2_3:3956900-3956919 None:intergenic 50.0%
GATCAAGACGACACCTTCTC+CGG - chr2_3:3956899-3956918 Msa0272410:three_prime_UTR 50.0%
CTCCGGTGAAGTAGTTTCAG+CGG + chr2_3:3956975-3956994 None:intergenic 50.0%
GGATTCAGTGATCCCAATCC+TGG - chr2_3:3957001-3957020 Msa0272410:three_prime_UTR 50.0%
AACGGAGAAGGAGAGTAACC+AGG + chr2_3:3957022-3957041 None:intergenic 50.0%
! TCTGCGGTGAGGTATTCGTT+AGG - chr2_3:3957597-3957616 Msa0272410:intron 50.0%
! CTGCGGTGAGGTATTCGTTA+GGG - chr2_3:3957598-3957617 Msa0272410:intron 50.0%
ACGATCGAACTCGGTATCCT+GGG + chr2_3:3957699-3957718 None:intergenic 50.0%
AACGATCGAACTCGGTATCC+TGG + chr2_3:3957700-3957719 None:intergenic 50.0%
!! GACGCCTTGCTATTTGAAGC+TGG - chr2_3:3957829-3957848 Msa0272410:intron 50.0%
TCGACCCTACTCCTTATCCA+GGG + chr2_3:3958688-3958707 None:intergenic 50.0%
ATCGACCCTACTCCTTATCC+AGG + chr2_3:3958689-3958708 None:intergenic 50.0%
TGCCATTGAGCTAGAGGAGA+AGG - chr2_3:3959664-3959683 Msa0272410:intron 50.0%
! CTCCTTCTCCTCTAGCTCAA+TGG + chr2_3:3959669-3959688 None:intergenic 50.0%
! TGAGGAGGCTGAGGAGTATA+AGG - chr2_3:3959721-3959740 Msa0272410:intron 50.0%
TCAATGTTGGCAACCTCACG+AGG + chr2_3:3959987-3960006 None:intergenic 50.0%
CCGTCAATCACTGTTGTCCA+AGG - chr2_3:3960041-3960060 Msa0272410:intron 50.0%
GAAAGATCTGTGGGTTTGCC+GGG + chr2_3:3960074-3960093 None:intergenic 50.0%
GGAAAGATCTGTGGGTTTGC+CGG + chr2_3:3960075-3960094 None:intergenic 50.0%
GCAAACCCACAGATCTTTCC+AGG - chr2_3:3960075-3960094 Msa0272410:intron 50.0%
CGCATCCTGGAAAGATCTGT+GGG + chr2_3:3960083-3960102 None:intergenic 50.0%
TCGCATCCTGGAAAGATCTG+TGG + chr2_3:3960084-3960103 None:intergenic 50.0%
CCAAAGGATGTGGCCTCTAA+CGG - chr2_3:3960254-3960273 Msa0272410:CDS 50.0%
!! TTATGCAGCAGGTTGGTCCT+CGG + chr2_3:3960315-3960334 None:intergenic 50.0%
!! GTCGTCAGTGAAAGCGTCGA+AGG + chr2_3:3956837-3956856 None:intergenic 55.0%
!! GAAGGTGTCGTCTTGATCGG+AGG + chr2_3:3956897-3956916 None:intergenic 55.0%
GACGACACCTTCTCCGGTTA+CGG - chr2_3:3956905-3956924 Msa0272410:three_prime_UTR 55.0%
GTAACCACCGTAACCGGAGA+AGG + chr2_3:3956915-3956934 None:intergenic 55.0%
GGTGACATCGCCGTCGAAAT+TGG + chr2_3:3956939-3956958 None:intergenic 55.0%
CGGTGAAGTAGTTTCAGCGG+CGG + chr2_3:3956972-3956991 None:intergenic 55.0%
CGCCGCTGAAACTACTTCAC+CGG - chr2_3:3956970-3956989 Msa0272410:three_prime_UTR 55.0%
TCACCAGGTGGAGGAAGGAT+CGG + chr2_3:3957124-3957143 None:intergenic 55.0%
TCCACCTGGTGAGATGGAGT+CGG - chr2_3:3957132-3957151 Msa0272410:CDS 55.0%
TGGAAGTTGGATCTGCGGTG+AGG - chr2_3:3957586-3957605 Msa0272410:intron 55.0%
TTGCGCGTGTTATACACCCC+AGG - chr2_3:3957679-3957698 Msa0272410:CDS 55.0%
CGATCGAACTCGGTATCCTG+GGG + chr2_3:3957698-3957717 None:intergenic 55.0%
GGAGTAGGGTCGATCAACTG+AGG - chr2_3:3958695-3958714 Msa0272410:intron 55.0%
! GGAGGCTGAGGAGTATAAGG+TGG - chr2_3:3959724-3959743 Msa0272410:intron 55.0%
TGCAGAGCTCATTCCTCGTG+AGG - chr2_3:3959971-3959990 Msa0272410:intron 55.0%
TTTAGCAGGAGCAGGTGGTG+GGG + chr2_3:3960153-3960172 None:intergenic 55.0%
CTTTAGCAGGAGCAGGTGGT+GGG + chr2_3:3960154-3960173 None:intergenic 55.0%
TCTTTAGCAGGAGCAGGTGG+TGG + chr2_3:3960155-3960174 None:intergenic 55.0%
GCATCTTTAGCAGGAGCAGG+TGG + chr2_3:3960158-3960177 None:intergenic 55.0%
GTAACTGGGTCAGCAGCTGA+AGG - chr2_3:3960215-3960234 Msa0272410:intron 55.0%
! TCAGCAGCTGAAGGTGCATC+AGG - chr2_3:3960224-3960243 Msa0272410:intron 55.0%
CCGTTAGAGGCCACATCCTT+TGG + chr2_3:3960257-3960276 None:intergenic 55.0%
!! CTTTCTGGGGTTCCTCTGCT+GGG + chr2_3:3960280-3960299 None:intergenic 55.0%
!! TCTTTCTGGGGTTCCTCTGC+TGG + chr2_3:3960281-3960300 None:intergenic 55.0%
GTCGCAGAGGCTTCTTTCTG+GGG + chr2_3:3960293-3960312 None:intergenic 55.0%
GGTCGCAGAGGCTTCTTTCT+GGG + chr2_3:3960294-3960313 None:intergenic 55.0%
! GGTGTCGTCTTGATCGGAGG+CGG + chr2_3:3956894-3956913 None:intergenic 60.0%
GACACCTTCTCCGGTTACGG+TGG - chr2_3:3956908-3956927 Msa0272410:three_prime_UTR 60.0%
TTCAGCGGCGGAGTGATCGA+CGG + chr2_3:3956960-3956979 None:intergenic 60.0%
CCATCTCACCAGGTGGAGGA+AGG + chr2_3:3957129-3957148 None:intergenic 60.0%
CCTTCCTCCACCTGGTGAGA+TGG - chr2_3:3957126-3957145 Msa0272410:CDS 60.0%
GACTCCATCTCACCAGGTGG+AGG + chr2_3:3957133-3957152 None:intergenic 60.0%
TCCGACTCCATCTCACCAGG+TGG + chr2_3:3957136-3957155 None:intergenic 60.0%
ACCTGGTGAGATGGAGTCGG+AGG - chr2_3:3957135-3957154 Msa0272410:CDS 60.0%
TCCTCCGACTCCATCTCACC+AGG + chr2_3:3957139-3957158 None:intergenic 60.0%
GGTGAGATGGAGTCGGAGGA+AGG - chr2_3:3957139-3957158 Msa0272410:CDS 60.0%
ACGCTCTTCGTGAATGGCGC+CGG - chr2_3:3957164-3957183 Msa0272410:CDS 60.0%
CACGCCGAGCAACTGTCCTA+TGG - chr2_3:3958964-3958983 Msa0272410:intron 60.0%
GTTGTCCAAGGCCCTAAGCC+CGG - chr2_3:3960053-3960072 Msa0272410:intron 60.0%
CTGTGGGTTTGCCGGGCTTA+GGG + chr2_3:3960067-3960086 None:intergenic 60.0%
TCTGTGGGTTTGCCGGGCTT+AGG + chr2_3:3960068-3960087 None:intergenic 60.0%
GGGGGAATCATGTGAGGTGG+TGG + chr2_3:3960134-3960153 None:intergenic 60.0%
GGTGGGGGAATCATGTGAGG+TGG + chr2_3:3960137-3960156 None:intergenic 60.0%
!! GGTGGTGGGGGAATCATGTG+AGG + chr2_3:3960140-3960159 None:intergenic 60.0%
! TTAGCAGGAGCAGGTGGTGG+GGG + chr2_3:3960152-3960171 None:intergenic 60.0%
TTCCTCTGCTGGGCCGTTAG+AGG + chr2_3:3960270-3960289 None:intergenic 60.0%
CGGTCGCAGAGGCTTCTTTC+TGG + chr2_3:3960295-3960314 None:intergenic 60.0%
GAAAGAAGCCTCTGCGACCG+AGG - chr2_3:3960295-3960314 Msa0272410:CDS 60.0%
TCGGAGGCGGCGAAGTTGTG+AGG + chr2_3:3956881-3956900 None:intergenic 65.0%
GGTCCGATCCTTCCTCCACC+TGG - chr2_3:3957118-3957137 Msa0272410:CDS 65.0%
GTTTGCCGGGCTTAGGGCCT+TGG + chr2_3:3960061-3960080 None:intergenic 65.0%
! AGGTTGGTCCTCGGTCGCAG+AGG + chr2_3:3960306-3960325 None:intergenic 65.0%
GGCCTCTAACGGCCCAGCAG+AGG - chr2_3:3960265-3960284 Msa0272410:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 3956718 3960721 3956718 ID=Msa0272410;Name=Msa0272410
chr2_3 mRNA 3956718 3960721 3956718 ID=Msa0272410-mRNA-1;Parent=Msa0272410;Name=Msa0272410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=106|1|1|1|1|1|3|387|313
chr2_3 exon 3956718 3957530 3956718 ID=Msa0272410-mRNA-1:exon:1989;Parent=Msa0272410-mRNA-1
chr2_3 exon 3957628 3957781 3957628 ID=Msa0272410-mRNA-1:exon:1988;Parent=Msa0272410-mRNA-1
chr2_3 exon 3960254 3960721 3960254 ID=Msa0272410-mRNA-1:exon:1987;Parent=Msa0272410-mRNA-1
chr2_3 five_prime_UTR 3960616 3960721 3960616 ID=Msa0272410-mRNA-1:five_prime_utr;Parent=Msa0272410-mRNA-1
chr2_3 CDS 3960254 3960615 3960254 ID=Msa0272410-mRNA-1:cds;Parent=Msa0272410-mRNA-1
chr2_3 CDS 3957628 3957781 3957628 ID=Msa0272410-mRNA-1:cds;Parent=Msa0272410-mRNA-1
chr2_3 CDS 3957105 3957530 3957105 ID=Msa0272410-mRNA-1:cds;Parent=Msa0272410-mRNA-1
chr2_3 three_prime_UTR 3956718 3957104 3956718 ID=Msa0272410-mRNA-1:three_prime_utr;Parent=Msa0272410-mRNA-1
Gene Sequence

>Msa0272410

ATGTCTTCTTCCTTCGACGCTTTCACTGACGACTTGAACGTCAACTCATCTTCTCCTCACAACTTCGCCGCCTCCGATCAAGACGACACCTTCTCCGGTTACGGTGGTTACTCCAATTTCGACGGCGATGTCACCGTCGATCACTCCGCCGCTGAAACTACTTCACCGGAGATCTACGGATTCAGTGATCCCAATCCTGGTTACTCTCCTTCTCCGTTTGAATCGGTTACTGTAGAAAACGGGAACGATAACGGAAACGGTTATGGTGATGATGACGGTGTTTTTGTTTCTGATGGTCCGATCCTTCCTCCACCTGGTGAGATGGAGTCGGAGGAAGGTTACGCTCTTCGTGAATGGCGCCGTCAAAATGCCATTGAGCTAGAGGAGAAGGAGAAAAGGGAAAAAGAAATGCGATTGAAGATTATTGAGGAGGCTGAGGAGTATAAGGTGGCTTTCTATGAGAAAAGGAAGCTTAATGTTGAGACTAACAAGGTTCAAAATAGAGAAAGGGAGAAGTTATTCGTAGCTAATCAAGAGAAGTTTCACAAAGAGGCAGACAAAGCTTATTGGAAGACAATTGCAGAGCTCATTCCTCGTGAGGTTGCCAACATTGAAAAGAGGAGAGGCAAAAAAGATCAGGATAAGAAGCCGTCAATCACTGTTGTCCAAGGCCCTAAGCCCGGCAAACCCACAGATCTTTCCAGGATGCGACAAATACTGCTAAAGCTGAAGCATACACCACCACCTCACATGATTCCCCCACCACCTGCTCCTGCTAAAGATGCTAAAGACGCAAAGGATGGAAAAGAAACATCATCTAAAGTAACTGGGTCAGCAGCTGAAGGTGCATCAGGATCACAACCAAAGGATGTGGCCTCTAACGGCCCAGCAGAGGAACCCCAGAAAGAAGCCTCTGCGACCGAGGACCAACCTGCTGCATAA
Protein sequence

>Msa0272410

MSSSFDAFTDDLNVNSSSPHNFAASDQDDTFSGYGGYSNFDGDVTVDHSAAETTSPEIYGFSDPNPGYSPSPFESVTVENGNDNGNGYGDDDGVFVSDGPILPPPGEMESEEGYALREWRRQNAIELEEKEKREKEMRLKIIEEAEEYKVAFYEKRKLNVETNKVQNREREKLFVANQEKFHKEADKAYWKTIAELIPREVANIEKRRGKKDQDKKPSITVVQGPKPGKPTDLSRMRQILLKLKHTPPPHMIPPPPAPAKDAKDAKDGKETSSKVTGSAAEGASGSQPKDVASNGPAEEPQKEASATEDQPAA*