Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050410 | Msa0521670 | 0.811856 | 5.678649e-51 | -8.615850e-47 |
| Msa0050410 | Msa0613340 | 0.809152 | 2.179550e-50 | -8.615850e-47 |
| Msa0050410 | Msa0698890 | 0.829715 | 4.407585e-55 | -8.615850e-47 |
| Msa0050410 | Msa0705990 | 0.801601 | 8.336903e-49 | -8.615850e-47 |
| Msa0050410 | Msa1143020 | 0.800485 | 1.409490e-48 | -8.615850e-47 |
| Msa0050410 | Msa1221330 | 0.804635 | 1.965030e-49 | -8.615850e-47 |
| Msa0050410 | Msa1462360 | 0.807106 | 5.944481e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTAAGTTTCTTTGATTT+TGG | 0.145559 | 1_2:+4295497 | Msa0050410:three_prime_UTR |
| AGATTGAAGGTGGTCGTATT+AGG | 0.222968 | 1_2:+4292132 | Msa0050410:CDS |
| AGGATGCTACCGATATTATT+TGG | 0.258812 | 1_2:+4292585 | Msa0050410:CDS |
| CTGACGGTATAATCTCTATT+TGG | 0.301468 | 1_2:-4292518 | None:intergenic |
| GTCTTTCATGCAGATGTTCA+AGG | 0.304301 | 1_2:+4294404 | Msa0050410:intron |
| TCATAAGATTGCTACCTTCA+TGG | 0.326331 | 1_2:+4295468 | Msa0050410:three_prime_UTR |
| GATTGAAGGTGGTCGTATTA+GGG | 0.360768 | 1_2:+4292133 | Msa0050410:CDS |
| TGAGACTATGAATATATCTT+TGG | 0.361174 | 1_2:+4295415 | Msa0050410:three_prime_UTR |
| AGTAGCCACTAAAGTATCTA+TGG | 0.367822 | 1_2:+4295338 | Msa0050410:three_prime_UTR |
| GGTCGTATTAGGGAGGTAAA+AGG | 0.384230 | 1_2:+4292143 | Msa0050410:CDS |
| TGGTAGTGGTGTTGGTTTGT+TGG | 0.387927 | 1_2:+4295563 | Msa0050410:three_prime_UTR |
| AGAAGAAACTATGGTGCAAT+AGG | 0.392447 | 1_2:-4294438 | None:intergenic |
| TGATTTGTTCCAAATAATAT+CGG | 0.395528 | 1_2:-4292594 | None:intergenic |
| GTGTTGGTTTGTTGGTAGAT+AGG | 0.397577 | 1_2:+4295571 | Msa0050410:three_prime_UTR |
| GCAGTCTGATAAGCAAATTA+TGG | 0.397821 | 1_2:+4293569 | Msa0050410:intron |
| TTGTAATTGCAATGCGCGCT+AGG | 0.402498 | 1_2:-4293596 | None:intergenic |
| GGTTTCGATAGAAGAAACTA+TGG | 0.427046 | 1_2:-4294447 | None:intergenic |
| CACTTCCATAGATACTTTAG+TGG | 0.431184 | 1_2:-4295343 | None:intergenic |
| CTCATCTGTGGGTCATGTAT+AGG | 0.434456 | 1_2:+4295523 | Msa0050410:three_prime_UTR |
| TGAAGGTTCGTATGAAAGGT+AGG | 0.449213 | 1_2:+4292477 | Msa0050410:intron |
| TGTTGGTTTGTTGGTAGATA+GGG | 0.453460 | 1_2:+4295572 | Msa0050410:three_prime_UTR |
| GTAGATAGGGAGATTTGTAA+TGG | 0.460422 | 1_2:+4295585 | Msa0050410:three_prime_UTR |
| GTAAAAGGTTATGATCAATA+TGG | 0.465026 | 1_2:+4292158 | Msa0050410:CDS |
| AGGATGATTTGAGATCAAAT+TGG | 0.474472 | 1_2:+4295543 | Msa0050410:three_prime_UTR |
| ATGGCTATGTATAAGATTGA+AGG | 0.474982 | 1_2:+4292119 | Msa0050410:CDS |
| ACATGGTGATGAGTTATTAG+AGG | 0.482109 | 1_2:+4290749 | Msa0050410:CDS |
| TTATTATATGTTGACTTCGA+TGG | 0.488546 | 1_2:+4292547 | Msa0050410:CDS |
| TGATGAGTTATTAGAGGTTG+AGG | 0.489842 | 1_2:+4290755 | Msa0050410:CDS |
| CGTTGTTAGAAAAGCGATGT+TGG | 0.493763 | 1_2:+4292054 | Msa0050410:CDS |
| GATGGAGTCGGTTGCTCGAG+AGG | 0.517975 | 1_2:+4292565 | Msa0050410:CDS |
| TTGTGGAACAAAAGAGTTTG+TGG | 0.518785 | 1_2:+4292084 | Msa0050410:CDS |
| GTATGAAAGGTAGGTGGAGA+TGG | 0.519096 | 1_2:+4292486 | Msa0050410:CDS |
| GATCAAATTGGTAGTGGTGT+TGG | 0.528161 | 1_2:+4295555 | Msa0050410:three_prime_UTR |
| GTTGAGGATATGTTCTATGT+TGG | 0.539739 | 1_2:+4290771 | Msa0050410:CDS |
| TGTAATTGCAATGCGCGCTA+GGG | 0.543317 | 1_2:-4293595 | None:intergenic |
| TATGTTGACTTCGATGGAGT+CGG | 0.544563 | 1_2:+4292553 | Msa0050410:CDS |
| AATCATAAAGTTGTGATACA+AGG | 0.565149 | 1_2:+4295381 | Msa0050410:three_prime_UTR |
| CTTAGAAGTCAATTCCATGA+AGG | 0.565460 | 1_2:-4295482 | None:intergenic |
| TGTTAGAAAAGCGATGTTGG+AGG | 0.570005 | 1_2:+4292057 | Msa0050410:CDS |
| ATCAATATGGTCGAAGCACA+CGG | 0.581010 | 1_2:+4292171 | Msa0050410:CDS |
| ATTTGAGATCAAATTGGTAG+TGG | 0.583057 | 1_2:+4295549 | Msa0050410:three_prime_UTR |
| GCGATGTTGGAGGATGTTTG+TGG | 0.589227 | 1_2:+4292067 | Msa0050410:CDS |
| CATATAATAAACACCACTGA+CGG | 0.591912 | 1_2:-4292534 | None:intergenic |
| CGCGCATTGCAATTACAATG+AGG | 0.592047 | 1_2:+4293601 | Msa0050410:CDS |
| GCGCATTGCAATTACAATGA+GGG | 0.594200 | 1_2:+4293602 | Msa0050410:CDS |
| AGTTTCTTCTATCGAAACCA+AGG | 0.603184 | 1_2:+4294451 | Msa0050410:exon |
| GTTTCTTCTATCGAAACCAA+GGG | 0.605202 | 1_2:+4294452 | Msa0050410:exon |
| TGAAGGTGGTCGTATTAGGG+AGG | 0.607056 | 1_2:+4292136 | Msa0050410:CDS |
| CAAGCAAAGCAAATGCGACA+TGG | 0.610183 | 1_2:+4290732 | Msa0050410:CDS |
| AATAGAGATTATACCGTCAG+TGG | 0.619129 | 1_2:+4292521 | Msa0050410:CDS |
| CACACGGTGGTTATTCGTAG+AGG | 0.631242 | 1_2:+4292187 | Msa0050410:CDS |
| GCTATGTATAAGATTGAAGG+TGG | 0.649826 | 1_2:+4292122 | Msa0050410:CDS |
| AGGTTCGTATGAAAGGTAGG+TGG | 0.667817 | 1_2:+4292480 | Msa0050410:intron |
| AATATGGTCGAAGCACACGG+TGG | 0.800762 | 1_2:+4292174 | Msa0050410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTATTTATTTGAG+GGG | - | chr1_2:4291324-4291343 | None:intergenic | 10.0% |
| !!! | CTTTTTTATTTATTTATTTG+AGG | - | chr1_2:4291326-4291345 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAAATTCAAGTT+CGG | + | chr1_2:4291373-4291392 | Msa0050410:intron | 10.0% |
| !!! | AAAATTGTAAATTTTCAAAT+AGG | + | chr1_2:4291715-4291734 | Msa0050410:intron | 10.0% |
| !! | AAAAAAATTGTATAAATAAG+AGG | + | chr1_2:4291884-4291903 | Msa0050410:intron | 10.0% |
| !!! | CATATATTAACATTTTTTTT+TGG | - | chr1_2:4292759-4292778 | None:intergenic | 10.0% |
| !! | AGATGATTATAAATATGATA+AGG | + | chr1_2:4290849-4290868 | Msa0050410:intron | 15.0% |
| !!! | TTACGTTATTTTTATTTACA+TGG | - | chr1_2:4291005-4291024 | None:intergenic | 15.0% |
| !! | ATTTAATAAATCAATCATCA+AGG | + | chr1_2:4291268-4291287 | Msa0050410:intron | 15.0% |
| !!! | AAAAAAAAAAATTCAAGTTC+GGG | + | chr1_2:4291374-4291393 | Msa0050410:intron | 15.0% |
| !!! | TAATTTTTTCTAGAGTAAAT+AGG | - | chr1_2:4291584-4291603 | None:intergenic | 15.0% |
| !! | TTTATAACTAAGTGAAAAAA+CGG | - | chr1_2:4293162-4293181 | None:intergenic | 15.0% |
| !!! | TGTAATTGATAATTTTTTCT+CGG | - | chr1_2:4293410-4293429 | None:intergenic | 15.0% |
| !! | TAAGTGAGTTAATAATTAAT+AGG | + | chr1_2:4293637-4293656 | Msa0050410:intron | 15.0% |
| !! | TTTGAAAATCAAAATAGAAA+AGG | - | chr1_2:4293874-4293893 | None:intergenic | 15.0% |
| !! | TAACAGAAACATAATTTAAA+AGG | - | chr1_2:4294107-4294126 | None:intergenic | 15.0% |
| !!! | ATTCATCATTTTTATTGAAT+AGG | + | chr1_2:4294201-4294220 | Msa0050410:intron | 15.0% |
| !!! | AAAATTTTAATTGTAGGATA+TGG | - | chr1_2:4294364-4294383 | None:intergenic | 15.0% |
| !!! | AATTGCAGTTATATATATTT+TGG | + | chr1_2:4294907-4294926 | Msa0050410:intron | 15.0% |
| !!! | CTAGTTTTCAAATTCAAAAA+GGG | - | chr1_2:4291035-4291054 | None:intergenic | 20.0% |
| !!! | AAAAAAAAAATTCAAGTTCG+GGG | + | chr1_2:4291375-4291394 | Msa0050410:intron | 20.0% |
| !!! | ATTGAAGTTTTGTTAATTTG+AGG | + | chr1_2:4291517-4291536 | Msa0050410:intron | 20.0% |
| !!! | TTGAAGTTTTGTTAATTTGA+GGG | + | chr1_2:4291518-4291537 | Msa0050410:intron | 20.0% |
| !! | AAATATGATCAAAGTAAGTT+AGG | + | chr1_2:4291690-4291709 | Msa0050410:intron | 20.0% |
| !! | TCAACAAATGTTAATGTATT+TGG | - | chr1_2:4291818-4291837 | None:intergenic | 20.0% |
| !! | AGAATGTTAGGAAAATTTAT+TGG | + | chr1_2:4291955-4291974 | Msa0050410:intron | 20.0% |
| !! | GAATGTTAGGAAAATTTATT+GGG | + | chr1_2:4291956-4291975 | Msa0050410:intron | 20.0% |
| !!! | TGATTTGTTCCAAATAATAT+CGG | - | chr1_2:4292597-4292616 | None:intergenic | 20.0% |
| !!! | ATAGATAATTTGTTTTTGCT+AGG | - | chr1_2:4292644-4292663 | None:intergenic | 20.0% |
| !! | AATGTTAATATATGTGTCAT+CGG | + | chr1_2:4292765-4292784 | Msa0050410:intron | 20.0% |
| !!! | TCAAAAGTTTATCATTTTGA+TGG | + | chr1_2:4293068-4293087 | Msa0050410:intron | 20.0% |
| !!! | TGATTTTATCTCAATTAGTA+AGG | + | chr1_2:4293442-4293461 | Msa0050410:intron | 20.0% |
| !! | AGTGACTAAAGTATATAAAA+AGG | + | chr1_2:4293492-4293511 | Msa0050410:intron | 20.0% |
| !! | TCAATTGAAAAAGTCAAAAA+GGG | - | chr1_2:4293677-4293696 | None:intergenic | 20.0% |
| !! | ATCAATTGAAAAAGTCAAAA+AGG | - | chr1_2:4293678-4293697 | None:intergenic | 20.0% |
| !! | TGAATTATATACACAAAAGA+AGG | - | chr1_2:4293907-4293926 | None:intergenic | 20.0% |
| !!! | TTTTTATTGAATAGGATATG+AGG | + | chr1_2:4294209-4294228 | Msa0050410:intron | 20.0% |
| !!! | TCAAATCCTTTTGAAAAATT+AGG | + | chr1_2:4294245-4294264 | Msa0050410:intron | 20.0% |
| !!! | TAGTTTCCTAATTTTTCAAA+AGG | - | chr1_2:4294254-4294273 | None:intergenic | 20.0% |
| !! | AAAATTAGGAAACTATTGAA+AGG | + | chr1_2:4294259-4294278 | Msa0050410:intron | 20.0% |
| !!! | GATTTTATGCAAGTTATATT+TGG | + | chr1_2:4294557-4294576 | Msa0050410:intron | 20.0% |
| !!! | ATTTTATTCCATTGATTCTT+TGG | + | chr1_2:4294948-4294967 | Msa0050410:intron | 20.0% |
| !! | AAATAAAACCAAAGAATCAA+TGG | - | chr1_2:4294959-4294978 | None:intergenic | 20.0% |
| !!! | TTGATTCTTTGGTTTTATTT+TGG | + | chr1_2:4294959-4294978 | Msa0050410:intron | 20.0% |
| !!! | TAATTTTATGACATGTTTGT+AGG | + | chr1_2:4295288-4295307 | Msa0050410:intron | 20.0% |
| ! | AATGAGATTATGAGTATGAT+TGG | + | chr1_2:4290874-4290893 | Msa0050410:intron | 25.0% |
| !!! | ATTTTTATTTACATGGTGAG+AGG | - | chr1_2:4290998-4291017 | None:intergenic | 25.0% |
| !!! | GCTAGTTTTCAAATTCAAAA+AGG | - | chr1_2:4291036-4291055 | None:intergenic | 25.0% |
| ! | TGAAAATAGGAACTAATTTG+AGG | - | chr1_2:4291225-4291244 | None:intergenic | 25.0% |
| !!! | ATTAGTTCCTATTTTCAAGA+TGG | + | chr1_2:4291228-4291247 | Msa0050410:intron | 25.0% |
| ! | TTATTTATTTGAGGGGAAAT+AGG | - | chr1_2:4291317-4291336 | None:intergenic | 25.0% |
| !! | AAAAAAAAATTCAAGTTCGG+GGG | + | chr1_2:4291376-4291395 | Msa0050410:intron | 25.0% |
| ! | TCACTAACAGAAAAATTTGA+CGG | + | chr1_2:4291454-4291473 | Msa0050410:intron | 25.0% |
| !!! | TGAAGTTTTGTTAATTTGAG+GGG | + | chr1_2:4291519-4291538 | Msa0050410:intron | 25.0% |
| !! | ACGAAACTTACAATTTTAGA+GGG | + | chr1_2:4291550-4291569 | Msa0050410:intron | 25.0% |
| ! | TTCAAATAGGTCATCTATTA+CGG | + | chr1_2:4291728-4291747 | Msa0050410:intron | 25.0% |
| !! | AAGGAGTATAAGAAACATTT+AGG | + | chr1_2:4291756-4291775 | Msa0050410:intron | 25.0% |
| ! | ATGTCTCTTATAGATAAGAT+CGG | + | chr1_2:4291843-4291862 | Msa0050410:intron | 25.0% |
| !!! | TATGTCTTGATGCTTTTTTT+TGG | + | chr1_2:4291922-4291941 | Msa0050410:intron | 25.0% |
| ! | GTAAAAGGTTATGATCAATA+TGG | + | chr1_2:4292158-4292177 | Msa0050410:CDS | 25.0% |
| !!! | TTATTATATGTTGACTTCGA+TGG | + | chr1_2:4292547-4292566 | Msa0050410:CDS | 25.0% |
| ! | TTTGACGATTATTACGTAAT+TGG | + | chr1_2:4292667-4292686 | Msa0050410:intron | 25.0% |
| !! | AAATGTTGATCATCTGTTTT+TGG | + | chr1_2:4292803-4292822 | Msa0050410:intron | 25.0% |
| !!! | AATGTTGATCATCTGTTTTT+GGG | + | chr1_2:4292804-4292823 | Msa0050410:intron | 25.0% |
| !!! | TATTTAGTTAGTTTGTGTGT+TGG | + | chr1_2:4292971-4292990 | Msa0050410:intron | 25.0% |
| !!! | ATTTAGTTAGTTTGTGTGTT+GGG | + | chr1_2:4292972-4292991 | Msa0050410:intron | 25.0% |
| !!! | TTTATCATTTTGATGGTTGA+AGG | + | chr1_2:4293075-4293094 | Msa0050410:intron | 25.0% |
| !!! | TAGTTTTTTATCTTCGTCTT+TGG | + | chr1_2:4293113-4293132 | Msa0050410:intron | 25.0% |
| ! | AAAAAACGGAAACACATAAT+AGG | - | chr1_2:4293148-4293167 | None:intergenic | 25.0% |
| ! | CAAAACAAACAAATGAGTTA+TGG | - | chr1_2:4293191-4293210 | None:intergenic | 25.0% |
| ! | AATGCAATGATAGAAATCAA+TGG | - | chr1_2:4293236-4293255 | None:intergenic | 25.0% |
| ! | ACTATATTATGTATGAGTCA+AGG | + | chr1_2:4293467-4293486 | Msa0050410:intron | 25.0% |
| ! | AATAGAAAAGGATTACAAAG+AGG | - | chr1_2:4293862-4293881 | None:intergenic | 25.0% |
| ! | TTCTATATTCATGTGATTGT+GGG | - | chr1_2:4293931-4293950 | None:intergenic | 25.0% |
| ! | ATTCTATATTCATGTGATTG+TGG | - | chr1_2:4293932-4293951 | None:intergenic | 25.0% |
| ! | CAATCACATGAATATAGAAT+TGG | + | chr1_2:4293932-4293951 | Msa0050410:intron | 25.0% |
| ! | ACATGAATATAGAATTGGAA+GGG | + | chr1_2:4293937-4293956 | Msa0050410:intron | 25.0% |
| ! | ATTCAAATTGAAGCTTGTAT+AGG | - | chr1_2:4293966-4293985 | None:intergenic | 25.0% |
| ! | CCACTAAATTAGAAAAGAAA+TGG | - | chr1_2:4294290-4294309 | None:intergenic | 25.0% |
| !! | CCATTTCTTTTCTAATTTAG+TGG | + | chr1_2:4294287-4294306 | Msa0050410:intron | 25.0% |
| ! | TAAACCTAAAACAGTAAGTA+TGG | + | chr1_2:4294479-4294498 | Msa0050410:intron | 25.0% |
| !!! | AGTATTTGCTCTTTTTGAAA+CGG | - | chr1_2:4294588-4294607 | None:intergenic | 25.0% |
| ! | GAAAGAAACAAATTCTACAA+TGG | - | chr1_2:4294702-4294721 | None:intergenic | 25.0% |
| ! | TATATACCTTCAATTTGTGT+TGG | - | chr1_2:4295016-4295035 | None:intergenic | 25.0% |
| ! | AATAACAACAACATAGTATG+AGG | - | chr1_2:4295090-4295109 | None:intergenic | 25.0% |
| ! | TCTCACATTAAAACAGAAAT+GGG | + | chr1_2:4295138-4295157 | Msa0050410:intron | 25.0% |
| !!! | TTAGAATATAGTCTAGCTTT+TGG | + | chr1_2:4295192-4295211 | Msa0050410:intron | 25.0% |
| ! | ACATGTCATAAAATTAGTGT+TGG | - | chr1_2:4295284-4295303 | None:intergenic | 25.0% |
| ! | AATCATAAAGTTGTGATACA+AGG | + | chr1_2:4295381-4295400 | Msa0050410:three_prime_UTR | 25.0% |
| ! | TGAGACTATGAATATATCTT+TGG | + | chr1_2:4295415-4295434 | Msa0050410:three_prime_UTR | 25.0% |
| !!! | CTTCTAAGTTTCTTTGATTT+TGG | + | chr1_2:4295497-4295516 | Msa0050410:three_prime_UTR | 25.0% |
| AGATTATGAGTATGATTGGA+GGG | + | chr1_2:4290878-4290897 | Msa0050410:intron | 30.0% | |
| ! | AACTCACACATGAGTATTTT+CGG | + | chr1_2:4291129-4291148 | Msa0050410:intron | 30.0% |
| ! | AGTATTTTCGGTATTTCAGT+TGG | + | chr1_2:4291141-4291160 | Msa0050410:intron | 30.0% |
| GAAGATACCATCTTGAAAAT+AGG | - | chr1_2:4291238-4291257 | None:intergenic | 30.0% | |
| TAACAGAAAAATTTGACGGA+GGG | + | chr1_2:4291458-4291477 | Msa0050410:intron | 30.0% | |
| ATTAACGTTGTGCAATTTCA+GGG | + | chr1_2:4291490-4291509 | Msa0050410:intron | 30.0% | |
| !!! | GAAGTTTTGTTAATTTGAGG+GGG | + | chr1_2:4291520-4291539 | Msa0050410:intron | 30.0% |
| !!! | AAGTTTTGTTAATTTGAGGG+GGG | + | chr1_2:4291521-4291540 | Msa0050410:intron | 30.0% |
| ! | GACGAAACTTACAATTTTAG+AGG | + | chr1_2:4291549-4291568 | Msa0050410:intron | 30.0% |
| !! | CGAAACTTACAATTTTAGAG+GGG | + | chr1_2:4291551-4291570 | Msa0050410:intron | 30.0% |
| !! | GAAACTTACAATTTTAGAGG+GGG | + | chr1_2:4291552-4291571 | Msa0050410:intron | 30.0% |
| TCAAATAGGTCATCTATTAC+GGG | + | chr1_2:4291729-4291748 | Msa0050410:intron | 30.0% | |
| GAAACATTTAGGTCAACAAA+AGG | + | chr1_2:4291767-4291786 | Msa0050410:intron | 30.0% | |
| !! | GGAAAATTTATTGGGTTGAT+TGG | + | chr1_2:4291964-4291983 | Msa0050410:intron | 30.0% |
| ! | ATTAGTTTGGATAACGAGAA+TGG | + | chr1_2:4291993-4292012 | Msa0050410:intron | 30.0% |
| ! | TTTGTGGTACAAGCTTTTAA+TGG | + | chr1_2:4292100-4292119 | Msa0050410:CDS | 30.0% |
| ATGGCTATGTATAAGATTGA+AGG | + | chr1_2:4292119-4292138 | Msa0050410:CDS | 30.0% | |
| ! | GTTTGATGACAATTTGCATA+GGG | + | chr1_2:4292234-4292253 | Msa0050410:intron | 30.0% |
| ! | AACTGACAACAAACGATTTT+CGG | - | chr1_2:4292341-4292360 | None:intergenic | 30.0% |
| !!! | GTTAAATGGCATTGTTTTGA+AGG | + | chr1_2:4292460-4292479 | Msa0050410:intron | 30.0% |
| CATATAATAAACACCACTGA+CGG | - | chr1_2:4292537-4292556 | None:intergenic | 30.0% | |
| !!! | ACGACTTTTTTGAGACTATT+TGG | + | chr1_2:4292829-4292848 | Msa0050410:intron | 30.0% |
| !!! | CGACTTTTTTGAGACTATTT+GGG | + | chr1_2:4292830-4292849 | Msa0050410:intron | 30.0% |
| !!! | GACTTTTTTGAGACTATTTG+GGG | + | chr1_2:4292831-4292850 | Msa0050410:intron | 30.0% |
| !!! | CACATTTTTTCAGTGAAAGA+AGG | + | chr1_2:4293018-4293037 | Msa0050410:intron | 30.0% |
| !!! | TTTTTTATCTTCGTCTTTGG+TGG | + | chr1_2:4293116-4293135 | Msa0050410:intron | 30.0% |
| !!! | TTTTTTTGAAGAAGTGTGCT+CGG | + | chr1_2:4293281-4293300 | Msa0050410:intron | 30.0% |
| AATTGATTGTACAATCCACA+AGG | + | chr1_2:4293691-4293710 | Msa0050410:intron | 30.0% | |
| ATTGATTGTACAATCCACAA+GGG | + | chr1_2:4293692-4293711 | Msa0050410:intron | 30.0% | |
| CAACGTGAAAACATATTGAT+AGG | - | chr1_2:4293767-4293786 | None:intergenic | 30.0% | |
| !!! | GAGGAGAAAAATTTTAGTTC+TGG | - | chr1_2:4293840-4293859 | None:intergenic | 30.0% |
| CACATGAATATAGAATTGGA+AGG | + | chr1_2:4293936-4293955 | Msa0050410:intron | 30.0% | |
| AAGAAAGCTTCAAACATGTT+TGG | - | chr1_2:4294061-4294080 | None:intergenic | 30.0% | |
| !! | CATGTTTGAAGCTTTCTTTT+TGG | + | chr1_2:4294063-4294082 | Msa0050410:intron | 30.0% |
| ! | TACACCATACTTACTGTTTT+AGG | - | chr1_2:4294486-4294505 | None:intergenic | 30.0% |
| AGCATATCAAACTCATTACA+TGG | - | chr1_2:4294641-4294660 | None:intergenic | 30.0% | |
| !!! | CATTTCTGTTTTAATGTGAG+AGG | - | chr1_2:4295139-4295158 | None:intergenic | 30.0% |
| CTCTCACATTAAAACAGAAA+TGG | + | chr1_2:4295137-4295156 | Msa0050410:intron | 30.0% | |
| TTTATGACATGTTTGTAGGA+AGG | + | chr1_2:4295292-4295311 | Msa0050410:intron | 30.0% | |
| ! | AGGATGATTTGAGATCAAAT+TGG | + | chr1_2:4295543-4295562 | Msa0050410:three_prime_UTR | 30.0% |
| ! | ATTTGAGATCAAATTGGTAG+TGG | + | chr1_2:4295549-4295568 | Msa0050410:three_prime_UTR | 30.0% |
| ! | ACATGGTGATGAGTTATTAG+AGG | + | chr1_2:4290749-4290768 | Msa0050410:CDS | 35.0% |
| TGATGAGTTATTAGAGGTTG+AGG | + | chr1_2:4290755-4290774 | Msa0050410:CDS | 35.0% | |
| GTTGAGGATATGTTCTATGT+TGG | + | chr1_2:4290771-4290790 | Msa0050410:CDS | 35.0% | |
| GAGATTATGAGTATGATTGG+AGG | + | chr1_2:4290877-4290896 | Msa0050410:intron | 35.0% | |
| TGTGTTTGGTCTCTTAACAT+TGG | + | chr1_2:4290919-4290938 | Msa0050410:intron | 35.0% | |
| !! | GTTGTGCTTGCTATATATGT+GGG | - | chr1_2:4290976-4290995 | None:intergenic | 35.0% |
| CACATAAGTGCAAAACTTCA+GGG | + | chr1_2:4291407-4291426 | Msa0050410:intron | 35.0% | |
| ACATAAGTGCAAAACTTCAG+GGG | + | chr1_2:4291408-4291427 | Msa0050410:intron | 35.0% | |
| CTAACAGAAAAATTTGACGG+AGG | + | chr1_2:4291457-4291476 | Msa0050410:intron | 35.0% | |
| AACAGAAAAATTTGACGGAG+GGG | + | chr1_2:4291459-4291478 | Msa0050410:intron | 35.0% | |
| GATTAACGTTGTGCAATTTC+AGG | + | chr1_2:4291489-4291508 | Msa0050410:intron | 35.0% | |
| TTAACGTTGTGCAATTTCAG+GGG | + | chr1_2:4291491-4291510 | Msa0050410:intron | 35.0% | |
| AAAGGTGATGTCTCTAGTTA+AGG | + | chr1_2:4291785-4291804 | Msa0050410:intron | 35.0% | |
| GATGTCTCTAGTTAAGGATT+TGG | + | chr1_2:4291791-4291810 | Msa0050410:intron | 35.0% | |
| TCTCTTATAGATAAGATCGG+AGG | + | chr1_2:4291846-4291865 | Msa0050410:intron | 35.0% | |
| !!! | GTCTTGATGCTTTTTTTTGG+AGG | + | chr1_2:4291925-4291944 | Msa0050410:intron | 35.0% |
| ! | TGATTGGAACACGATTAGTT+TGG | + | chr1_2:4291980-4291999 | Msa0050410:intron | 35.0% |
| ! | AATGGAGTGCTAAGAATTAG+TGG | + | chr1_2:4292011-4292030 | Msa0050410:intron | 35.0% |
| TTGTGGAACAAAAGAGTTTG+TGG | + | chr1_2:4292084-4292103 | Msa0050410:CDS | 35.0% | |
| GCTATGTATAAGATTGAAGG+TGG | + | chr1_2:4292122-4292141 | Msa0050410:CDS | 35.0% | |
| ! | GGTTTGATGACAATTTGCAT+AGG | + | chr1_2:4292233-4292252 | Msa0050410:intron | 35.0% |
| !!! | ATTTTTTTGTGCTTGATGCG+TGG | + | chr1_2:4292267-4292286 | Msa0050410:intron | 35.0% |
| CGTCTAAACCTATTACACAT+AGG | - | chr1_2:4292304-4292323 | None:intergenic | 35.0% | |
| !!! | GTTTTGAAGGTTCGTATGAA+AGG | + | chr1_2:4292473-4292492 | Msa0050410:intron | 35.0% |
| CTGACGGTATAATCTCTATT+TGG | - | chr1_2:4292521-4292540 | None:intergenic | 35.0% | |
| AATAGAGATTATACCGTCAG+TGG | + | chr1_2:4292521-4292540 | Msa0050410:CDS | 35.0% | |
| AGGATGCTACCGATATTATT+TGG | + | chr1_2:4292585-4292604 | Msa0050410:CDS | 35.0% | |
| ACGTAATTGGATCTCTACAA+TGG | + | chr1_2:4292680-4292699 | Msa0050410:intron | 35.0% | |
| ATATATGTGTCATCGGATGT+TGG | + | chr1_2:4292772-4292791 | Msa0050410:intron | 35.0% | |
| CTGAATAACCAAATTGCACA+AGG | - | chr1_2:4292914-4292933 | None:intergenic | 35.0% | |
| CTTGTGCAATTTGGTTATTC+AGG | + | chr1_2:4292912-4292931 | Msa0050410:intron | 35.0% | |
| GCTCGGTATAATTCTTTGTT+TGG | + | chr1_2:4293298-4293317 | Msa0050410:intron | 35.0% | |
| GCAGTCTGATAAGCAAATTA+TGG | + | chr1_2:4293569-4293588 | Msa0050410:intron | 35.0% | |
| ACGTTGCTCAAAAATTAGTC+TGG | + | chr1_2:4293781-4293800 | Msa0050410:intron | 35.0% | |
| AGAAAAGGATTACAAAGAGG+AGG | - | chr1_2:4293859-4293878 | None:intergenic | 35.0% | |
| ! | TTTGATCAGCATGAGTTTTG+AGG | + | chr1_2:4294020-4294039 | Msa0050410:intron | 35.0% |
| !! | TTCTTTTTGGTAGCCATTCT+CGG | + | chr1_2:4294076-4294095 | Msa0050410:intron | 35.0% |
| AGAAGAAACTATGGTGCAAT+AGG | - | chr1_2:4294441-4294460 | None:intergenic | 35.0% | |
| GGTTTCGATAGAAGAAACTA+TGG | - | chr1_2:4294450-4294469 | None:intergenic | 35.0% | |
| AGTTTCTTCTATCGAAACCA+AGG | + | chr1_2:4294451-4294470 | Msa0050410:exon | 35.0% | |
| GTTTCTTCTATCGAAACCAA+GGG | + | chr1_2:4294452-4294471 | Msa0050410:exon | 35.0% | |
| !!! | GTTTTAGGTTTACTTTCCCT+TGG | - | chr1_2:4294471-4294490 | None:intergenic | 35.0% |
| CAAAACAAATCGTCTAGATG+CGG | - | chr1_2:4294515-4294534 | None:intergenic | 35.0% | |
| ! | GCTTGCTTAGATGTTTCTTT+TGG | + | chr1_2:4294658-4294677 | Msa0050410:intron | 35.0% |
| TTGAAGAGAGATAATAGCAG+AGG | + | chr1_2:4294765-4294784 | Msa0050410:intron | 35.0% | |
| TTGTTGCCAACACAAATTGA+AGG | + | chr1_2:4295007-4295026 | Msa0050410:intron | 35.0% | |
| ! | TTAATGTGAGAGGTATGAGA+TGG | - | chr1_2:4295129-4295148 | None:intergenic | 35.0% |
| TCTGAGTGTTTGAATTGTGT+AGG | - | chr1_2:4295230-4295249 | None:intergenic | 35.0% | |
| ! | AGTAGCCACTAAAGTATCTA+TGG | + | chr1_2:4295338-4295357 | Msa0050410:three_prime_UTR | 35.0% |
| CACTTCCATAGATACTTTAG+TGG | - | chr1_2:4295346-4295365 | None:intergenic | 35.0% | |
| TCATAAGATTGCTACCTTCA+TGG | + | chr1_2:4295468-4295487 | Msa0050410:three_prime_UTR | 35.0% | |
| CTTAGAAGTCAATTCCATGA+AGG | - | chr1_2:4295485-4295504 | None:intergenic | 35.0% | |
| !! | TGTTGGTTTGTTGGTAGATA+GGG | + | chr1_2:4295572-4295591 | Msa0050410:three_prime_UTR | 35.0% |
| GTAGATAGGGAGATTTGTAA+TGG | + | chr1_2:4295585-4295604 | Msa0050410:three_prime_UTR | 35.0% | |
| CCAAACACACCAGTGAAAAT+GGG | - | chr1_2:4290908-4290927 | None:intergenic | 40.0% | |
| ACCAAACACACCAGTGAAAA+TGG | - | chr1_2:4290909-4290928 | None:intergenic | 40.0% | |
| ! | GGGACTACTAGCTTATTGTA+AGG | - | chr1_2:4290956-4290975 | None:intergenic | 40.0% |
| !! | GGTTGTGCTTGCTATATATG+TGG | - | chr1_2:4290977-4290996 | None:intergenic | 40.0% |
| AAATGTGTTGGGTAAAGAGC+AGG | + | chr1_2:4291173-4291192 | Msa0050410:intron | 40.0% | |
| TGAGGGGAAATAGGATAGAA+AGG | - | chr1_2:4291308-4291327 | None:intergenic | 40.0% | |
| GCACATAAGTGCAAAACTTC+AGG | + | chr1_2:4291406-4291425 | Msa0050410:intron | 40.0% | |
| CATAAGTGCAAAACTTCAGG+GGG | + | chr1_2:4291409-4291428 | Msa0050410:intron | 40.0% | |
| ATAAGTGCAAAACTTCAGGG+GGG | + | chr1_2:4291410-4291429 | Msa0050410:intron | 40.0% | |
| ACAGAAAAATTTGACGGAGG+GGG | + | chr1_2:4291460-4291479 | Msa0050410:intron | 40.0% | |
| TAACGTTGTGCAATTTCAGG+GGG | + | chr1_2:4291492-4291511 | Msa0050410:intron | 40.0% | |
| ATAGGTCATCTATTACGGGA+CGG | + | chr1_2:4291733-4291752 | Msa0050410:intron | 40.0% | |
| CGTTGTTAGAAAAGCGATGT+TGG | + | chr1_2:4292054-4292073 | Msa0050410:CDS | 40.0% | |
| TGTTAGAAAAGCGATGTTGG+AGG | + | chr1_2:4292057-4292076 | Msa0050410:CDS | 40.0% | |
| AGATTGAAGGTGGTCGTATT+AGG | + | chr1_2:4292132-4292151 | Msa0050410:CDS | 40.0% | |
| GATTGAAGGTGGTCGTATTA+GGG | + | chr1_2:4292133-4292152 | Msa0050410:CDS | 40.0% | |
| ATCAATATGGTCGAAGCACA+CGG | + | chr1_2:4292171-4292190 | Msa0050410:CDS | 40.0% | |
| !! | TGGGATTGATAGTGGGTAAT+TGG | + | chr1_2:4292212-4292231 | Msa0050410:intron | 40.0% |
| TGATGACAATTTGCATAGGG+TGG | + | chr1_2:4292237-4292256 | Msa0050410:intron | 40.0% | |
| TGTTGTCAGTTGCTCAAATG+TGG | + | chr1_2:4292350-4292369 | Msa0050410:intron | 40.0% | |
| TCAGTTGCTCAAATGTGGTA+AGG | + | chr1_2:4292355-4292374 | Msa0050410:intron | 40.0% | |
| CAGTTGCTCAAATGTGGTAA+GGG | + | chr1_2:4292356-4292375 | Msa0050410:intron | 40.0% | |
| ! | GTAGTGAGGATTGTTAGCTT+GGG | + | chr1_2:4292394-4292413 | Msa0050410:intron | 40.0% |
| TGAAGGTTCGTATGAAAGGT+AGG | + | chr1_2:4292477-4292496 | Msa0050410:intron | 40.0% | |
| !! | TATGTTGACTTCGATGGAGT+CGG | + | chr1_2:4292553-4292572 | Msa0050410:CDS | 40.0% |
| ATGGATAATCCAACTAAGCG+AGG | + | chr1_2:4292699-4292718 | Msa0050410:intron | 40.0% | |
| TGACTAATTCCTCGCTTAGT+TGG | - | chr1_2:4292711-4292730 | None:intergenic | 40.0% | |
| ! | GACTATTTGGGGCCTATTTA+TGG | + | chr1_2:4292842-4292861 | Msa0050410:intron | 40.0% |
| ! | TTTGGGGCCTATTTATGGAA+TGG | + | chr1_2:4292847-4292866 | Msa0050410:intron | 40.0% |
| GGCCTATTTATGGAATGGTT+CGG | + | chr1_2:4292852-4292871 | Msa0050410:intron | 40.0% | |
| CTCCGAACCATTCCATAAAT+AGG | - | chr1_2:4292857-4292876 | None:intergenic | 40.0% | |
| GTGCAATTTGGTTATTCAGG+AGG | + | chr1_2:4292915-4292934 | Msa0050410:intron | 40.0% | |
| GCGCATTGCAATTACAATGA+GGG | + | chr1_2:4293602-4293621 | Msa0050410:CDS | 40.0% | |
| TTAAAAGGCTAGACCGAGAA+TGG | - | chr1_2:4294092-4294111 | None:intergenic | 40.0% | |
| GTCTTTCATGCAGATGTTCA+AGG | + | chr1_2:4294404-4294423 | Msa0050410:intron | 40.0% | |
| !! | TGATTTTGGTCTCTCATCTG+TGG | + | chr1_2:4295511-4295530 | Msa0050410:three_prime_UTR | 40.0% |
| !! | GATTTTGGTCTCTCATCTGT+GGG | + | chr1_2:4295512-4295531 | Msa0050410:three_prime_UTR | 40.0% |
| !! | GATCAAATTGGTAGTGGTGT+TGG | + | chr1_2:4295555-4295574 | Msa0050410:three_prime_UTR | 40.0% |
| !! | GTGTTGGTTTGTTGGTAGAT+AGG | + | chr1_2:4295571-4295590 | Msa0050410:three_prime_UTR | 40.0% |
| CAAGCAAAGCAAATGCGACA+TGG | + | chr1_2:4290732-4290751 | Msa0050410:CDS | 45.0% | |
| GTTGGTGTAGCAGTAGCTAA+TGG | + | chr1_2:4290789-4290808 | Msa0050410:intron | 45.0% | |
| ! | CCCATTTTCACTGGTGTGTT+TGG | + | chr1_2:4290905-4290924 | Msa0050410:intron | 45.0% |
| TAAGTGCAAAACTTCAGGGG+GGG | + | chr1_2:4291411-4291430 | Msa0050410:intron | 45.0% | |
| GGAGGAGCTATGAGAATGTT+AGG | + | chr1_2:4291943-4291962 | Msa0050410:intron | 45.0% | |
| GGTCGTATTAGGGAGGTAAA+AGG | + | chr1_2:4292143-4292162 | Msa0050410:CDS | 45.0% | |
| ! | GTGGTTATTCGTAGAGGTGT+GGG | + | chr1_2:4292193-4292212 | Msa0050410:intron | 45.0% |
| ! | TAGAGGTGTGGGATTGATAG+TGG | + | chr1_2:4292204-4292223 | Msa0050410:intron | 45.0% |
| ! | AGAGGTGTGGGATTGATAGT+GGG | + | chr1_2:4292205-4292224 | Msa0050410:intron | 45.0% |
| TGACAATTTGCATAGGGTGG+TGG | + | chr1_2:4292240-4292259 | Msa0050410:intron | 45.0% | |
| ! | TTTTGTGCTTGATGCGTGGT+TGG | + | chr1_2:4292271-4292290 | Msa0050410:intron | 45.0% |
| !! | GAGGGGTACCTATGTGTAAT+AGG | + | chr1_2:4292293-4292312 | Msa0050410:intron | 45.0% |
| GGTAGTGAGGATTGTTAGCT+TGG | + | chr1_2:4292393-4292412 | Msa0050410:intron | 45.0% | |
| AGGTTCGTATGAAAGGTAGG+TGG | + | chr1_2:4292480-4292499 | Msa0050410:intron | 45.0% | |
| GTATGAAAGGTAGGTGGAGA+TGG | + | chr1_2:4292486-4292505 | Msa0050410:CDS | 45.0% | |
| ATGTGTCATCGGATGTTGGA+CGG | + | chr1_2:4292776-4292795 | Msa0050410:intron | 45.0% | |
| CCAAATTGCACAAGGTGATC+AGG | - | chr1_2:4292906-4292925 | None:intergenic | 45.0% | |
| CCTGATCACCTTGTGCAATT+TGG | + | chr1_2:4292903-4292922 | Msa0050410:intron | 45.0% | |
| TGTAATTGCAATGCGCGCTA+GGG | - | chr1_2:4293598-4293617 | None:intergenic | 45.0% | |
| TTGTAATTGCAATGCGCGCT+AGG | - | chr1_2:4293599-4293618 | None:intergenic | 45.0% | |
| CGCGCATTGCAATTACAATG+AGG | + | chr1_2:4293601-4293620 | Msa0050410:CDS | 45.0% | |
| GATTGTACAATCCACAAGGG+CGG | + | chr1_2:4293695-4293714 | Msa0050410:intron | 45.0% | |
| ! | TGGGTGCATTCAAGCATTGT+TGG | + | chr1_2:4295157-4295176 | Msa0050410:intron | 45.0% |
| CTCATCTGTGGGTCATGTAT+AGG | + | chr1_2:4295523-4295542 | Msa0050410:three_prime_UTR | 45.0% | |
| !! | TGGTAGTGGTGTTGGTTTGT+TGG | + | chr1_2:4295563-4295582 | Msa0050410:three_prime_UTR | 45.0% |
| !! | TTGATTTATTAAATTTAATA+TGG | - | chr1_2:4291262-4291281 | None:intergenic | 5.0% |
| !!! | TTTTTTATTTATTTATTTGA+GGG | - | chr1_2:4291325-4291344 | None:intergenic | 5.0% |
| !!! | TATTATAAAATTTTAATTGT+AGG | - | chr1_2:4294370-4294389 | None:intergenic | 5.0% |
| ! | GAGGGATTGCCCATTTTCAC+TGG | + | chr1_2:4290896-4290915 | Msa0050410:intron | 50.0% |
| TGGACGCGAGCAAAATGTGT+TGG | + | chr1_2:4291161-4291180 | Msa0050410:intron | 50.0% | |
| GGACGCGAGCAAAATGTGTT+GGG | + | chr1_2:4291162-4291181 | Msa0050410:intron | 50.0% | |
| AAGTGCAAAACTTCAGGGGG+GGG | + | chr1_2:4291412-4291431 | Msa0050410:intron | 50.0% | |
| GTCATCTATTACGGGACGGA+AGG | + | chr1_2:4291737-4291756 | Msa0050410:intron | 50.0% | |
| GCGATGTTGGAGGATGTTTG+TGG | + | chr1_2:4292067-4292086 | Msa0050410:CDS | 50.0% | |
| TGAAGGTGGTCGTATTAGGG+AGG | + | chr1_2:4292136-4292155 | Msa0050410:CDS | 50.0% | |
| AATATGGTCGAAGCACACGG+TGG | + | chr1_2:4292174-4292193 | Msa0050410:CDS | 50.0% | |
| CACACGGTGGTTATTCGTAG+AGG | + | chr1_2:4292187-4292206 | Msa0050410:CDS | 50.0% | |
| GGTGGTTATTCGTAGAGGTG+TGG | + | chr1_2:4292192-4292211 | Msa0050410:intron | 50.0% | |
| GCTCAAATGTGGTAAGGGAG+AGG | + | chr1_2:4292361-4292380 | Msa0050410:intron | 50.0% | |
| AATGTGGTAAGGGAGAGGCT+TGG | + | chr1_2:4292366-4292385 | Msa0050410:intron | 50.0% | |
| GTAAGGGAGAGGCTTGGAAA+TGG | + | chr1_2:4292372-4292391 | Msa0050410:intron | 50.0% | |
| ! | GAGGCTTGGAAATGGTAGTG+AGG | + | chr1_2:4292380-4292399 | Msa0050410:intron | 50.0% |
| ! | GTGAGGATTGTTAGCTTGGG+AGG | + | chr1_2:4292397-4292416 | Msa0050410:intron | 50.0% |
| ! | CTTGGGAGGAGAAGCATGTT+GGG | + | chr1_2:4292411-4292430 | Msa0050410:intron | 50.0% |
| ! | TTGGGAGGAGAAGCATGTTG+GGG | + | chr1_2:4292412-4292431 | Msa0050410:intron | 50.0% |
| GGGGGTTGTGAGCTGTTAAA+TGG | + | chr1_2:4292446-4292465 | Msa0050410:intron | 50.0% | |
| TGTGCTTGATGCGTGGTTGG+AGG | + | chr1_2:4292274-4292293 | Msa0050410:intron | 55.0% | |
| GTGCTTGATGCGTGGTTGGA+GGG | + | chr1_2:4292275-4292294 | Msa0050410:intron | 55.0% | |
| TGCTTGATGCGTGGTTGGAG+GGG | + | chr1_2:4292276-4292295 | Msa0050410:intron | 55.0% | |
| ! | GCTTGGGAGGAGAAGCATGT+TGG | + | chr1_2:4292410-4292429 | Msa0050410:intron | 55.0% |
| ! | TGGGAGGAGAAGCATGTTGG+GGG | + | chr1_2:4292413-4292432 | Msa0050410:intron | 55.0% |
| ! | GGGAGGAGAAGCATGTTGGG+GGG | + | chr1_2:4292414-4292433 | Msa0050410:intron | 60.0% |
| ! | GGAGGAGAAGCATGTTGGGG+GGG | + | chr1_2:4292415-4292434 | Msa0050410:intron | 60.0% |
| ! | GAGGAGAAGCATGTTGGGGG+GGG | + | chr1_2:4292416-4292435 | Msa0050410:intron | 60.0% |
| ! | AGGAGAAGCATGTTGGGGGG+GGG | + | chr1_2:4292417-4292436 | Msa0050410:intron | 60.0% |
| GATGGAGTCGGTTGCTCGAG+AGG | + | chr1_2:4292565-4292584 | Msa0050410:CDS | 60.0% | |
| CAGACATGAAGCCGCCCTTG+TGG | - | chr1_2:4293709-4293728 | None:intergenic | 60.0% | |
| ! | GGAGAAGCATGTTGGGGGGG+GGG | + | chr1_2:4292418-4292437 | Msa0050410:intron | 65.0% |
| ! | GAGAAGCATGTTGGGGGGGG+GGG | + | chr1_2:4292419-4292438 | Msa0050410:intron | 65.0% |
| ! | AGAAGCATGTTGGGGGGGGG+GGG | + | chr1_2:4292420-4292439 | Msa0050410:intron | 65.0% |
| GAAGCATGTTGGGGGGGGGG+GGG | + | chr1_2:4292421-4292440 | Msa0050410:intron | 70.0% | |
| AAGCATGTTGGGGGGGGGGG+GGG | + | chr1_2:4292422-4292441 | Msa0050410:intron | 70.0% | |
| AGCATGTTGGGGGGGGGGGG+GGG | + | chr1_2:4292423-4292442 | Msa0050410:intron | 75.0% | |
| ! | GCATGTTGGGGGGGGGGGGG+GGG | + | chr1_2:4292424-4292443 | Msa0050410:intron | 80.0% |
| ! | CATGTTGGGGGGGGGGGGGG+GGG | + | chr1_2:4292425-4292444 | Msa0050410:intron | 80.0% |
| ! | ATGTTGGGGGGGGGGGGGGG+GGG | + | chr1_2:4292426-4292445 | Msa0050410:intron | 80.0% |
| ! | TGTTGGGGGGGGGGGGGGGG+GGG | + | chr1_2:4292427-4292446 | Msa0050410:intron | 85.0% |
| ! | GTTGGGGGGGGGGGGGGGGG+GGG | + | chr1_2:4292428-4292447 | Msa0050410:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 4290726 | 4295669 | 4290726 | ID=Msa0050410;Name=Msa0050410 |
| chr1_2 | mRNA | 4290726 | 4295669 | 4290726 | ID=Msa0050410-mRNA-1;Parent=Msa0050410;Name=Msa0050410-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0.2|0.33|0.33|0.8|0.66|6|399|154 |
| chr1_2 | exon | 4290726 | 4290800 | 4290726 | ID=Msa0050410-mRNA-1:exon:1092;Parent=Msa0050410-mRNA-1 |
| chr1_2 | exon | 4292053 | 4292208 | 4292053 | ID=Msa0050410-mRNA-1:exon:1093;Parent=Msa0050410-mRNA-1 |
| chr1_2 | exon | 4292482 | 4292628 | 4292482 | ID=Msa0050410-mRNA-1:exon:1094;Parent=Msa0050410-mRNA-1 |
| chr1_2 | exon | 4293573 | 4293623 | 4293573 | ID=Msa0050410-mRNA-1:exon:1095;Parent=Msa0050410-mRNA-1 |
| chr1_2 | exon | 4294417 | 4294491 | 4294417 | ID=Msa0050410-mRNA-1:exon:1096;Parent=Msa0050410-mRNA-1 |
| chr1_2 | exon | 4295310 | 4295669 | 4295310 | ID=Msa0050410-mRNA-1:exon:1097;Parent=Msa0050410-mRNA-1 |
| chr1_2 | CDS | 4290726 | 4290800 | 4290726 | ID=Msa0050410-mRNA-1:cds;Parent=Msa0050410-mRNA-1 |
| chr1_2 | CDS | 4292053 | 4292208 | 4292053 | ID=Msa0050410-mRNA-1:cds;Parent=Msa0050410-mRNA-1 |
| chr1_2 | CDS | 4292482 | 4292628 | 4292482 | ID=Msa0050410-mRNA-1:cds;Parent=Msa0050410-mRNA-1 |
| chr1_2 | CDS | 4293573 | 4293623 | 4293573 | ID=Msa0050410-mRNA-1:cds;Parent=Msa0050410-mRNA-1 |
| chr1_2 | CDS | 4294417 | 4294452 | 4294417 | ID=Msa0050410-mRNA-1:cds;Parent=Msa0050410-mRNA-1 |
| chr1_2 | three_prime_UTR | 4294453 | 4294491 | 4294453 | ID=Msa0050410-mRNA-1:three_prime_utr;Parent=Msa0050410-mRNA-1 |
| chr1_2 | three_prime_UTR | 4295310 | 4295669 | 4295310 | ID=Msa0050410-mRNA-1:three_prime_utr;Parent=Msa0050410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
