AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0705990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705990 MtrunA17_Chr8g0385111 97.656 640 15 0 1 640 1 640 0.0 1284
Msa0705990 MtrunA17_Chr3g0130981 71.479 568 145 6 73 640 73 623 0.0 766
Msa0705990 MtrunA17_Chr1g0200831 56.757 666 240 12 1 637 1 647 0.0 697
Msa0705990 MtrunA17_Chr3g0142751 45.908 501 233 7 100 578 76 560 1.01e-143 431
Msa0705990 MtrunA17_Chr1g0156671 49.268 410 200 3 105 512 86 489 4.31e-126 385
Msa0705990 MtrunA17_Chr1g0188181 25.551 454 257 12 150 531 156 600 3.29e-28 119
Msa0705990 MtrunA17_Chr1g0168081 29.187 209 138 2 150 355 43 244 7.33e-17 84.3
Msa0705990 MtrunA17_Chr1g0168081 28.966 145 90 3 373 513 440 575 1.95e-13 73.6
Msa0705990 MtrunA17_Chr1g0186481 27.907 215 146 2 150 361 46 254 1.47e-16 83.2
Msa0705990 MtrunA17_Chr1g0186481 30.137 146 87 3 373 513 410 545 8.20e-13 71.2
Msa0705990 MtrunA17_Chr6g0475791 27.570 214 147 3 150 359 36 245 9.44e-14 73.9
Msa0705990 MtrunA17_Chr6g0475791 33.333 141 83 3 373 510 320 452 3.12e-13 72.4
Msa0705990 MtrunA17_Chr1g0198031 24.528 212 148 4 149 355 25 229 1.55e-13 73.9
Msa0705990 MtrunA17_Chr1g0198031 31.250 144 86 3 371 510 433 567 2.23e-13 73.2
Msa0705990 MtrunA17_Chr1g0179471 30.070 143 87 3 373 513 387 518 6.95e-13 71.6
Msa0705990 MtrunA17_Chr3g0126591 29.801 151 88 4 371 513 424 564 1.64e-11 67.4
Msa0705990 MtrunA17_Chr7g0265631 37.500 88 55 0 150 237 29 116 3.69e-11 66.2
Msa0705990 MtrunA17_Chr4g0009451 27.189 217 144 4 150 356 19 231 8.27e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705990 AT1G34320.1 56.383 658 266 9 1 640 1 655 0.0 703
Msa0705990 AT1G34320.2 56.383 658 266 9 1 640 1 655 0.0 703
Msa0705990 AT5G08660.3 53.385 650 279 9 1 640 1 636 0.0 614
Msa0705990 AT5G08660.1 53.385 650 279 9 1 640 1 636 0.0 614
Msa0705990 AT5G08660.4 53.385 650 279 9 1 640 1 636 0.0 614
Msa0705990 AT5G08660.2 65.423 402 135 2 71 472 74 471 2.43e-178 514
Msa0705990 AT1G30755.5 48.723 470 228 5 100 562 83 546 7.81e-143 429
Msa0705990 AT1G30755.1 48.723 470 228 5 100 562 83 546 7.81e-143 429
Msa0705990 AT1G30755.6 48.723 470 228 5 100 562 83 546 7.81e-143 429
Msa0705990 AT1G30755.3 52.279 373 175 2 100 471 83 453 9.42e-129 387
Msa0705990 AT1G30755.4 51.253 359 172 2 100 457 83 439 2.37e-117 357
Msa0705990 AT1G30755.2 51.253 359 172 2 100 457 83 439 2.37e-117 357
Msa0705990 AT5G51670.1 24.235 425 260 7 145 512 32 451 7.17e-23 102
Msa0705990 AT5G51670.2 24.235 425 260 7 145 512 32 451 7.17e-23 102
Msa0705990 AT3G23160.1 28.708 209 140 2 150 355 43 245 1.01e-16 84.0
Msa0705990 AT3G23160.1 31.724 145 87 3 373 513 361 497 1.83e-13 73.9

Find 164 sgRNAs with CRISPR-Local

Find 483 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATAGTGTTCTTCCTTCT+TGG 0.214550 4_4:-78847794 None:intergenic
TTGCTGATGGTTCGAATAAA+TGG 0.240623 4_4:-78852736 None:intergenic
CTTCATTAGGAGCTTGGTTT+TGG 0.257394 4_4:+78854856 Msa0705990:three_prime_UTR
TTGTTTAAAGAGAGAAATTA+AGG 0.264781 4_4:-78847588 None:intergenic
AGTGCTTAACCTGCTTCTTT+TGG 0.267827 4_4:-78852027 None:intergenic
CGCAAATACTCGTTGTTGTT+TGG 0.280514 4_4:+78847370 Msa0705990:five_prime_UTR
TGCAGAGCGCATCACGGTTT+TGG 0.282124 4_4:+78854038 Msa0705990:intron
GGACTTTGACAGTCTGAAAA+TGG 0.283201 4_4:+78854515 Msa0705990:CDS
GAAAGAATAGGTTGAAGTTT+TGG 0.284754 4_4:-78847611 None:intergenic
AGTAACAAAATTCCTGTTAG+AGG 0.287347 4_4:+78854471 Msa0705990:CDS
AAATGTGACCAGATAATATA+TGG 0.293418 4_4:+78854689 Msa0705990:exon
AGATTTAGTATCAAAGGATA+TGG 0.300423 4_4:+78849854 Msa0705990:CDS
GGGTGTGGATAGTAAGAAAA+AGG 0.306250 4_4:+78847888 Msa0705990:CDS
CTGGATTTCTTAGCTTCATT+AGG 0.309555 4_4:+78854843 Msa0705990:three_prime_UTR
GGCTACCTCCTCCAAACTTC+TGG 0.310516 4_4:-78852071 None:intergenic
TCTGATGAGGTGATTCGTTT+TGG 0.312370 4_4:+78850032 Msa0705990:CDS
TAGAAAAGAGATTGATGTTT+GGG 0.314896 4_4:+78855234 Msa0705990:three_prime_UTR
AACATGAAATGTAGGTAATT+TGG 0.317265 4_4:-78853328 None:intergenic
TATTCACGCAGCTAGTGTTT+TGG 0.319465 4_4:+78854790 Msa0705990:three_prime_UTR
GTGTGGTAACTGAATGAAAA+AGG 0.323105 4_4:-78847633 None:intergenic
GTCACTCTGGTCCAGAAGTT+TGG 0.335880 4_4:+78852060 Msa0705990:CDS
AGACGATACGCTTTCTTGTC+TGG 0.346287 4_4:+78854934 Msa0705990:three_prime_UTR
AGTGTATCCCTTGTATTTGC+AGG 0.358116 4_4:-78853264 None:intergenic
AGCATGACAAATTTAAATTC+TGG 0.359223 4_4:+78849669 Msa0705990:CDS
TTTCAAGTGTCAATAGGTAT+AGG 0.359399 4_4:-78855102 None:intergenic
ACCGCAATGCACACTTCTAT+TGG 0.360075 4_4:+78854966 Msa0705990:three_prime_UTR
CTAGGCAGAGCTGGCACTAT+TGG 0.364186 4_4:+78849606 Msa0705990:CDS
CAAGTCTACAAAAGGTAATA+AGG 0.364781 4_4:+78847765 Msa0705990:CDS
AGGATATGGACGAACTTCTA+AGG 0.365311 4_4:+78849868 Msa0705990:CDS
TCTGGCGGTGGCTTTGCATA+TGG 0.369637 4_4:+78849687 Msa0705990:CDS
GTGTATAGGCAGTGAGGATT+TGG 0.370939 4_4:+78855021 Msa0705990:three_prime_UTR
TCTCTTGTGGCTTCACCGCT+TGG 0.373772 4_4:+78854296 Msa0705990:CDS
CACTATGGTAATCATAAATC+TGG 0.382794 4_4:+78847808 Msa0705990:CDS
ATAGAAAAGAGATTGATGTT+TGG 0.386779 4_4:+78855233 Msa0705990:three_prime_UTR
ATACCATGAGTTACATGCTT+TGG 0.387151 4_4:+78851542 Msa0705990:CDS
AGAAGAGGTGCTTAAGTTAG+AGG 0.388917 4_4:+78849824 Msa0705990:CDS
CTAGAAGATCTGCCAAAATC+TGG 0.389229 4_4:-78854816 None:intergenic
GCCCTGCAGGACCCAATCTT+TGG 0.389603 4_4:-78852762 None:intergenic
CATCAGCAATCGCCAAAGAT+TGG 0.396750 4_4:+78852750 Msa0705990:CDS
TCTTAGCTTCATTAGGAGCT+TGG 0.397664 4_4:+78854850 Msa0705990:three_prime_UTR
AGAGCTGGCACTATTGGATT+CGG 0.398439 4_4:+78849612 Msa0705990:CDS
CGCCAAAGATTGGGTCCTGC+AGG 0.405769 4_4:+78852760 Msa0705990:CDS
TGGTTCGAATAAATGGTTTA+CGG 0.411166 4_4:-78852729 None:intergenic
AGGAATGATGATTTCTATGA+TGG 0.418073 4_4:+78847952 Msa0705990:CDS
TACTTACTAGAGTATCCATT+TGG 0.418537 4_4:-78852813 None:intergenic
TTGGAGATAAATAAAGCCTT+TGG 0.420581 4_4:+78852345 Msa0705990:CDS
GTTGGAGAGTGGGCAAGCAC+TGG 0.422682 4_4:+78854065 Msa0705990:CDS
TTGGCTGTGTTTGTAGCAAT+TGG 0.429155 4_4:-78853893 None:intergenic
TGTATTTGCAGGCATAGAAC+TGG 0.429803 4_4:-78853253 None:intergenic
CGATAGCCTGTCAATCTTGA+AGG 0.439047 4_4:+78851991 Msa0705990:CDS
GAGCTGGCACTATTGGATTC+GGG 0.443156 4_4:+78849613 Msa0705990:CDS
GAATAGTCCCATATATTATC+TGG 0.443168 4_4:-78854697 None:intergenic
CTTGTGGCTTCACCGCTTGG+CGG 0.452374 4_4:+78854299 Msa0705990:CDS
CACTGTAGCAGATATTAAAC+AGG 0.455035 4_4:+78853841 Msa0705990:CDS
CAATCTTTGGCGATTGCTGA+TGG 0.459530 4_4:-78852749 None:intergenic
TGGCAGATCTTCTAGCATCC+TGG 0.463939 4_4:+78854824 Msa0705990:three_prime_UTR
TGCAAATATAGTGCTCCAAA+TGG 0.466071 4_4:+78852798 Msa0705990:CDS
ATCAGCAATCGCCAAAGATT+GGG 0.466852 4_4:+78852751 Msa0705990:CDS
CTTTGTTCCAAGTCTACAAA+AGG 0.469105 4_4:+78847757 Msa0705990:CDS
TAATCGCCTTTGAAATGAAA+GGG 0.470904 4_4:+78854721 Msa0705990:three_prime_UTR
GGTACGCCCTCCTGCGGAGA+AGG 0.475028 4_4:+78847391 Msa0705990:five_prime_UTR
TGCAGGCATAGAACTGGATC+TGG 0.477034 4_4:-78853247 None:intergenic
CCGCTTGGCGGTCAAGAGTA+AGG 0.478575 4_4:+78854311 Msa0705990:CDS
AATAAAGCCTTTGGCAGTGC+AGG 0.481849 4_4:+78852354 Msa0705990:CDS
GATCATTAAAAGTAAAAGCT+TGG 0.481852 4_4:+78854494 Msa0705990:CDS
TAGATAGTAGTCCATGTCAA+TGG 0.483704 4_4:+78855184 Msa0705990:intron
TACATTTCATGTTGCAGAAG+AGG 0.484223 4_4:+78853338 Msa0705990:CDS
GGATCCTCAGTGGCACAACT+TGG 0.485426 4_4:+78850067 Msa0705990:CDS
CTAATGAAGCTAAGAAATCC+AGG 0.488296 4_4:-78854842 None:intergenic
TTAATCGCCTTTGAAATGAA+AGG 0.489253 4_4:+78854720 Msa0705990:three_prime_UTR
GTTCTGCCTTCAAGATTGAC+AGG 0.490831 4_4:-78851997 None:intergenic
GCATATGGAGCTGTAACAAA+GGG 0.491949 4_4:+78849702 Msa0705990:CDS
GTCCACACTCAACACCCAAT+TGG 0.492957 4_4:-78847517 None:intergenic
AGTTCACGCCTAGGCAGAGC+TGG 0.493448 4_4:+78849597 Msa0705990:CDS
CTACCACCCTTTCATTTCAA+AGG 0.502218 4_4:-78854727 None:intergenic
GTTCTATGCCTGCAAATACA+AGG 0.505891 4_4:+78853256 Msa0705990:CDS
AGATAGTAGTCCATGTCAAT+GGG 0.506314 4_4:+78855185 Msa0705990:intron
TGTCAAGGGCTTTAGTCTCA+TGG 0.508920 4_4:+78849767 Msa0705990:CDS
GAGACATGAGGCGGCGATTG+TGG 0.510358 4_4:-78847428 None:intergenic
AAGACAAGCTGCTGTTGCTA+AGG 0.512156 4_4:+78848026 Msa0705990:CDS
GACTTCTCCAACATCACCTC+CGG 0.514412 4_4:-78854334 None:intergenic
ACTTAGAAGCCAAAAGAAGC+AGG 0.515237 4_4:+78852018 Msa0705990:CDS
TCTTCTGCAACATGAAATGT+AGG 0.515563 4_4:-78853336 None:intergenic
AGTAAGGCCGGAGGTGATGT+TGG 0.515673 4_4:+78854327 Msa0705990:CDS
TAATGCAAAGAGAGCCCTGC+AGG 0.516772 4_4:-78852775 None:intergenic
AGCAGATATTAAACAGGAGA+TGG 0.519050 4_4:+78853847 Msa0705990:CDS
ATGCAATGCAGAACTACCAT+AGG 0.519554 4_4:-78855047 None:intergenic
GATGAGTTTAGTTCAACATA+CGG 0.524002 4_4:+78850282 Msa0705990:CDS
TTGGTGTTGCTGCAGAAACT+AGG 0.524480 4_4:+78847932 Msa0705990:CDS
ACCAAGAAGGAAGAACACTA+TGG 0.524865 4_4:+78847793 Msa0705990:CDS
TCACCATGCAGATAAAGAAA+AGG 0.528930 4_4:+78854251 Msa0705990:CDS
TGTTCAACCTTCTCCGCAGG+AGG 0.529807 4_4:-78847398 None:intergenic
TATTAAACATTTGAAAGAAG+AGG 0.530195 4_4:+78849809 Msa0705990:CDS
ATAATATATAGAAACACTGT+TGG 0.531243 4_4:+78855208 Msa0705990:three_prime_UTR
TGTTCAAGATTTAGTATCAA+AGG 0.536250 4_4:+78849848 Msa0705990:CDS
GTAACAAAGGGGAACGAAGT+TGG 0.536469 4_4:+78849714 Msa0705990:CDS
GGTAATCATAAATCTGGTGT+TGG 0.537321 4_4:+78847814 Msa0705990:CDS
TGCTCATCGGTTGTTAGCAA+TGG 0.540892 4_4:-78854429 None:intergenic
CAATAGTGCCAGCTCTGCCT+AGG 0.543379 4_4:-78849605 None:intergenic
TTGGAGAGTGGGCAAGCACT+GGG 0.543558 4_4:+78854066 Msa0705990:CDS
TGCATATGGAGCTGTAACAA+AGG 0.543642 4_4:+78849701 Msa0705990:CDS
TGTTTCAATCCGCATTACTT+CGG 0.546642 4_4:-78854226 None:intergenic
TCATGTTCAACCTTCTCCGC+AGG 0.548412 4_4:-78847401 None:intergenic
AGTGAGGATTTGGTACCCTA+TGG 0.549212 4_4:+78855031 Msa0705990:three_prime_UTR
GACAAGTGCAAAGGAGGGTG+TGG 0.549385 4_4:+78847873 Msa0705990:CDS
ACAAATTTAAATTCTGGCGG+TGG 0.549754 4_4:+78849675 Msa0705990:CDS
TGATTTGACAAGTGCAAAGG+AGG 0.552376 4_4:+78847867 Msa0705990:CDS
CTTCAGCATGATCTGCTCAT+CGG 0.555626 4_4:-78854442 None:intergenic
ATATTCTTGAACTTCTCTTG+TGG 0.555712 4_4:+78854283 Msa0705990:CDS
TTGGCGGTCAAGAGTAAGGC+CGG 0.558373 4_4:+78854315 Msa0705990:CDS
TCAAAGACAAACAAAAGAAG+AGG 0.561166 4_4:+78850237 Msa0705990:CDS
TATCCAAAGCATGTAACTCA+TGG 0.568232 4_4:-78851545 None:intergenic
GTAACAAAATTCCTGTTAGA+GGG 0.569393 4_4:+78854472 Msa0705990:CDS
TAATAAGGCTTTAACCAAGA+AGG 0.570936 4_4:+78847780 Msa0705990:CDS
GGTTGCAAACACTATTGTCA+AGG 0.574498 4_4:+78849752 Msa0705990:CDS
GGAATGATGATTTCTATGAT+GGG 0.579366 4_4:+78847953 Msa0705990:CDS
AATGTGACCAGATAATATAT+GGG 0.582045 4_4:+78854690 Msa0705990:exon
ACTCTGGTCCAGAAGTTTGG+AGG 0.584664 4_4:+78852063 Msa0705990:CDS
GTTGACGTTCTAGACACACT+TGG 0.587915 4_4:+78849642 Msa0705990:CDS
GCAACATGAGGACAGAAGAA+TGG 0.595138 4_4:+78854749 Msa0705990:three_prime_UTR
TTGTTTGGTACGCCCTCCTG+CGG 0.598165 4_4:+78847385 Msa0705990:five_prime_UTR
TGCAATGCAGAACTACCATA+GGG 0.599455 4_4:-78855046 None:intergenic
ACTTGAAGAAGAAGTCACTC+TGG 0.601104 4_4:+78852047 Msa0705990:CDS
CGATGAGCAGATCATGCTGA+AGG 0.606428 4_4:+78854443 Msa0705990:CDS
TATATATTATCCCATTGACA+TGG 0.607376 4_4:-78855195 None:intergenic
TAGTGATTTGACAAGTGCAA+AGG 0.607913 4_4:+78847864 Msa0705990:CDS
GTTGCAAACACTATTGTCAA+GGG 0.609003 4_4:+78849753 Msa0705990:CDS
CATGAGGCGGCGATTGTGGT+CGG 0.610037 4_4:-78847424 None:intergenic
GGATTGTTGCTGCAGACAAG+AGG 0.610168 4_4:+78849889 Msa0705990:CDS
CTCAACGACAAGTAGAAGCA+AGG 0.611322 4_4:+78854578 Msa0705990:CDS
GTACATACCTGCACTGCCAA+AGG 0.611468 4_4:-78852361 None:intergenic
CTGGTCCAGAAGTTTGGAGG+AGG 0.611782 4_4:+78852066 Msa0705990:CDS
TTGACGTTCTAGACACACTT+GGG 0.616300 4_4:+78849643 Msa0705990:CDS
GCCAAAGATTGGGTCCTGCA+GGG 0.618606 4_4:+78852761 Msa0705990:CDS
ATGACAAATTTAAATTCTGG+CGG 0.623658 4_4:+78849672 Msa0705990:CDS
GCCTAGGCGTGAACTCACCT+CGG 0.624055 4_4:-78849589 None:intergenic
TCAGCATAAGCGTGATGAGG+AGG 0.627680 4_4:+78851584 Msa0705990:CDS
GAAAGGGTGGTAGCAACATG+AGG 0.632891 4_4:+78854737 Msa0705990:three_prime_UTR
TCTGTCATAAAGTCTCATGT+TGG 0.633215 4_4:+78854360 Msa0705990:CDS
GATTTGACAAGTGCAAAGGA+GGG 0.634502 4_4:+78847868 Msa0705990:CDS
TGCACACTTCTATTGGAGCA+AGG 0.636973 4_4:+78854973 Msa0705990:three_prime_UTR
TTCTATGCCTGCAAATACAA+GGG 0.637331 4_4:+78853257 Msa0705990:CDS
CTTTCTATTTCAGGTCTCCG+AGG 0.639149 4_4:+78849572 Msa0705990:intron
GTTCAACCTTCTCCGCAGGA+GGG 0.640320 4_4:-78847397 None:intergenic
AACCAATTGGGTGTTGAGTG+TGG 0.641584 4_4:+78847515 Msa0705990:five_prime_UTR
TCCGAGGTGAGTTCACGCCT+AGG 0.646167 4_4:+78849588 Msa0705990:CDS
CGATCCAAGTTGTGCCACTG+AGG 0.655867 4_4:-78850071 None:intergenic
CTATGAAGACCGAAGTAATG+CGG 0.659298 4_4:+78854217 Msa0705990:CDS
TCGCCTTTGAAATGAAAGGG+TGG 0.662368 4_4:+78854724 Msa0705990:three_prime_UTR
TTATCAGCATAAGCGTGATG+AGG 0.663554 4_4:+78851581 Msa0705990:CDS
AATTGATGCAGAGCGCATCA+CGG 0.675237 4_4:+78854032 Msa0705990:intron
CCTTACTCTTGACCGCCAAG+CGG 0.680015 4_4:-78854311 None:intergenic
TCTTGAGTGTATAGGCAGTG+AGG 0.684828 4_4:+78855015 Msa0705990:three_prime_UTR
TATCGTCTCAACAACCTCTG+TGG 0.687389 4_4:-78854919 None:intergenic
AAGACAATCAAAGAGACATG+AGG 0.696981 4_4:-78847440 None:intergenic
CATATGGAGCTGTAACAAAG+GGG 0.707348 4_4:+78849703 Msa0705990:CDS
ACAATCAAAGAGACATGAGG+CGG 0.707446 4_4:-78847437 None:intergenic
TCCAATAGAAGTGTGCATTG+CGG 0.709542 4_4:-78854967 None:intergenic
ATCGGTCAAAGGATCCTCAG+TGG 0.720581 4_4:+78850057 Msa0705990:CDS
GCGGTCAAGAGTAAGGCCGG+AGG 0.723415 4_4:+78854318 Msa0705990:CDS
AATTCAAGTGCAGCTCAAAG+CGG 0.724106 4_4:+78851609 Msa0705990:CDS
ACACTTCTATTGGAGCAAGG+TGG 0.727396 4_4:+78854976 Msa0705990:three_prime_UTR
GAGTTTAGTTCAACATACGG+CGG 0.743997 4_4:+78850285 Msa0705990:CDS
ACATATCGTCTTCACCACAG+AGG 0.791459 4_4:+78854905 Msa0705990:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAAAAAATTAATTAA+AGG + chr4_4:78852902-78852921 Msa0705990:intron 0.0%
!!! TGTTTTTTCATTAAATAAAA+AGG + chr4_4:78847662-78847681 Msa0705990:five_prime_UTR 10.0%
!! ATATGGATATATTTATAATT+TGG + chr4_4:78849447-78849466 Msa0705990:intron 10.0%
!! TATGGATATATTTATAATTT+GGG + chr4_4:78849448-78849467 Msa0705990:intron 10.0%
!!! AAATTTTTCATAAAATCTTA+TGG - chr4_4:78851361-78851380 None:intergenic 10.0%
!! TTTCTAATTTAATGTTAATT+TGG + chr4_4:78851721-78851740 Msa0705990:intron 10.0%
!! AAAAAATTAATTAAAGGAAT+AGG + chr4_4:78852908-78852927 Msa0705990:intron 10.0%
!! AAAAAGAAGATTGAAAAAAT+GGG - chr4_4:78847551-78847570 None:intergenic 15.0%
!! AAAAAAGAAGATTGAAAAAA+TGG - chr4_4:78847552-78847571 None:intergenic 15.0%
!!! AAAGATTGAATTTTTTGATA+TGG + chr4_4:78847729-78847748 Msa0705990:exon 15.0%
!!! AAGATTGAATTTTTTGATAT+GGG + chr4_4:78847730-78847749 Msa0705990:exon 15.0%
!!! ATTATAAAAGATGCAATTTT+AGG - chr4_4:78848472-78848491 None:intergenic 15.0%
!! TACAATAATATAGAATATGT+TGG - chr4_4:78849247-78849266 None:intergenic 15.0%
!! ATGGATATATTTATAATTTG+GGG + chr4_4:78849449-78849468 Msa0705990:intron 15.0%
!! AAAATTTACAACAAAAATAC+TGG - chr4_4:78850194-78850213 None:intergenic 15.0%
!! CCAAAAAAAAACTATTTAAA+TGG - chr4_4:78850399-78850418 None:intergenic 15.0%
!!! CCATTTAAATAGTTTTTTTT+TGG + chr4_4:78850396-78850415 Msa0705990:intron 15.0%
!! AATTGAAAAATCTTTCTTTA+TGG + chr4_4:78851508-78851527 Msa0705990:intron 15.0%
!!! AATTTGGATCTTAATATTTT+TGG - chr4_4:78851692-78851711 None:intergenic 15.0%
!!! TTAGAAATTTTCACAAAATT+TGG - chr4_4:78851708-78851727 None:intergenic 15.0%
!!! TAATATGTTTTTCTAGTTTT+TGG + chr4_4:78852546-78852565 Msa0705990:intron 15.0%
!!! AAAGTTAATTTTATATTAGG+AGG - chr4_4:78853303-78853322 None:intergenic 15.0%
!!! TCATTTTTAACATTTGTAAA+AGG - chr4_4:78853388-78853407 None:intergenic 15.0%
!! AACATAATTAAAAAAAACTG+CGG - chr4_4:78853780-78853799 None:intergenic 15.0%
!! AGAAATTAAGGAGTTAAAAA+TGG - chr4_4:78847579-78847598 None:intergenic 20.0%
!! TTGTTTAAAGAGAGAAATTA+AGG - chr4_4:78847591-78847610 None:intergenic 20.0%
!! ATCACAAAACATATTGTAAT+TGG + chr4_4:78848402-78848421 Msa0705990:intron 20.0%
!! TATCCATATATCTTAAACAT+TGG - chr4_4:78849436-78849455 None:intergenic 20.0%
!! TATTAAACATTTGAAAGAAG+AGG + chr4_4:78849809-78849828 Msa0705990:CDS 20.0%
!! GTCAGAACAAAAATAATAAA+AGG - chr4_4:78850172-78850191 None:intergenic 20.0%
!! ATAAAAAGATATTTCCACTT+CGG - chr4_4:78850539-78850558 None:intergenic 20.0%
!!! TTACGAAAAGGTAATTTTTT+CGG - chr4_4:78850563-78850582 None:intergenic 20.0%
!!! TTTTGACAAAAATTACGAAA+AGG - chr4_4:78850575-78850594 None:intergenic 20.0%
!!! AATTCTAGAGATTAATAAGT+TGG - chr4_4:78850833-78850852 None:intergenic 20.0%
!!! TTCATTCAACTTTTATTTTG+TGG + chr4_4:78851468-78851487 Msa0705990:intron 20.0%
!!! TGGAAGTATAAAAACATATA+GGG - chr4_4:78852149-78852168 None:intergenic 20.0%
!!! ATGGAAGTATAAAAACATAT+AGG - chr4_4:78852150-78852169 None:intergenic 20.0%
!! TATACATGGATAAATTACTA+TGG - chr4_4:78852169-78852188 None:intergenic 20.0%
!! TTCATTACCTAATAATTTAC+AGG + chr4_4:78852284-78852303 Msa0705990:intron 20.0%
!! ACTAGAAAAACATATTAACA+AGG - chr4_4:78852543-78852562 None:intergenic 20.0%
!!! TTTATTGATCATTTGATGAT+TGG + chr4_4:78852986-78853005 Msa0705990:intron 20.0%
!!! CGCAAAGTTAATTTTATATT+AGG - chr4_4:78853306-78853325 None:intergenic 20.0%
!!! CTTATTCTTTTTCTTTTGTT+TGG + chr4_4:78854000-78854019 Msa0705990:intron 20.0%
!!! AATCAAACAAGAATTTTGAA+GGG - chr4_4:78854170-78854189 None:intergenic 20.0%
!!! TTTTTAATTCTTGAGTGTAT+AGG + chr4_4:78855007-78855026 Msa0705990:three_prime_UTR 20.0%
!! ATAATATATAGAAACACTGT+TGG + chr4_4:78855208-78855227 Msa0705990:three_prime_UTR 20.0%
!!! ATATACTTTTTGCAACCAAT+TGG + chr4_4:78847502-78847521 Msa0705990:five_prime_UTR 25.0%
!!! TATACTTTTTGCAACCAATT+GGG + chr4_4:78847503-78847522 Msa0705990:five_prime_UTR 25.0%
! TGAATGAAAAAGGAAAGAAT+AGG - chr4_4:78847626-78847645 None:intergenic 25.0%
! ATGAAAAAACAGTAATAGTG+TGG - chr4_4:78847653-78847672 None:intergenic 25.0%
!!! GGTTGTTTTGTTTCTATATT+TGG + chr4_4:78847683-78847702 Msa0705990:five_prime_UTR 25.0%
!!! ATTGAATTTTTTGATATGGG+TGG + chr4_4:78847733-78847752 Msa0705990:exon 25.0%
!!! ATTCTTTTTCACATAAGTCT+AGG + chr4_4:78847992-78848011 Msa0705990:CDS 25.0%
! AATCTCTGAATTTATATGTC+TGG + chr4_4:78848104-78848123 Msa0705990:intron 25.0%
!! ACTTATTTGAGTTTATGTAC+CGG + chr4_4:78848131-78848150 Msa0705990:intron 25.0%
! TTAGTAATCTTAGACAAATC+AGG + chr4_4:78848368-78848387 Msa0705990:intron 25.0%
! ATTGAGTTTAGATAGATAGA+GGG + chr4_4:78848431-78848450 Msa0705990:intron 25.0%
!! CTCTCTTATTTCAAATTGAA+TGG + chr4_4:78848563-78848582 Msa0705990:intron 25.0%
!! AAATTGAATGGATAGCTTTT+GGG + chr4_4:78848575-78848594 Msa0705990:intron 25.0%
! AAATAACCAACAGTGAAAAT+GGG - chr4_4:78849030-78849049 None:intergenic 25.0%
! AAAATAACCAACAGTGAAAA+TGG - chr4_4:78849031-78849050 None:intergenic 25.0%
! AAGAAGAAAAATGTAACATG+TGG - chr4_4:78849063-78849082 None:intergenic 25.0%
!!! ATTATTCATTAGTGCTGATT+TGG + chr4_4:78849164-78849183 Msa0705990:intron 25.0%
! TGATAAACTCAGAGAAATTA+GGG - chr4_4:78849380-78849399 None:intergenic 25.0%
!! GAACCAATGTTTAAGATATA+TGG + chr4_4:78849430-78849449 Msa0705990:intron 25.0%
! TATTTATAATTTGGGGATCA+AGG + chr4_4:78849456-78849475 Msa0705990:intron 25.0%
! AGCATGACAAATTTAAATTC+TGG + chr4_4:78849669-78849688 Msa0705990:CDS 25.0%
! ATGACAAATTTAAATTCTGG+CGG + chr4_4:78849672-78849691 Msa0705990:CDS 25.0%
! TGTTCAAGATTTAGTATCAA+AGG + chr4_4:78849848-78849867 Msa0705990:CDS 25.0%
! AGATTTAGTATCAAAGGATA+TGG + chr4_4:78849854-78849873 Msa0705990:CDS 25.0%
!!! ACTGAAAGTTAGTTTGTTAA+TGG - chr4_4:78849944-78849963 None:intergenic 25.0%
!!! ATTGAAAGTATTTTCTGATG+AGG + chr4_4:78850019-78850038 Msa0705990:CDS 25.0%
! AGCAGAACTATAAAGAAAAT+GGG - chr4_4:78850691-78850710 None:intergenic 25.0%
! TAGCAGAACTATAAAGAAAA+TGG - chr4_4:78850692-78850711 None:intergenic 25.0%
! TGATATATGATAGAATATCG+TGG - chr4_4:78850801-78850820 None:intergenic 25.0%
! TAAACATTTGAACACAGTAT+AGG + chr4_4:78851903-78851922 Msa0705990:intron 25.0%
! AAACATTTGAACACAGTATA+GGG + chr4_4:78851904-78851923 Msa0705990:intron 25.0%
! GTATAGGGTAATATTTCTTT+AGG + chr4_4:78851919-78851938 Msa0705990:intron 25.0%
! AAGTATAAAAACATATAGGG+TGG - chr4_4:78852146-78852165 None:intergenic 25.0%
! AATTTATCCATGTATAATGC+TGG + chr4_4:78852173-78852192 Msa0705990:intron 25.0%
! ACCTAATAATTTACAGGTTA+TGG + chr4_4:78852290-78852309 Msa0705990:intron 25.0%
! TCCATAACCTGTAAATTATT+AGG - chr4_4:78852294-78852313 None:intergenic 25.0%
!! GTTATATTGATAACTGATGA+TGG - chr4_4:78852478-78852497 None:intergenic 25.0%
!!! GTCTCAATTTTTCTAGTTTT+TGG + chr4_4:78852600-78852619 Msa0705990:intron 25.0%
! TTGAATCATCAAATTACTCT+TGG + chr4_4:78852580-78852599 Msa0705990:intron 25.0%
! ACTGTAATTATTTCCTAACA+TGG + chr4_4:78852846-78852865 Msa0705990:intron 25.0%
! AATTAAAGGAATAGGTAACT+AGG + chr4_4:78852916-78852935 Msa0705990:intron 25.0%
! AACATGAAATGTAGGTAATT+TGG - chr4_4:78853331-78853350 None:intergenic 25.0%
! ATGAAAAACTGAGAAAATAG+TGG + chr4_4:78853404-78853423 Msa0705990:intron 25.0%
! AAGGTTCAAAATACTCAAAA+AGG + chr4_4:78853582-78853601 Msa0705990:intron 25.0%
! AGGTTCAAAATACTCAAAAA+GGG + chr4_4:78853583-78853602 Msa0705990:intron 25.0%
!!! TGTTTTTTGTTTTTTCCATG+TGG + chr4_4:78853796-78853815 Msa0705990:intron 25.0%
! CAAAAAATAAGGGAAAAAAG+TGG - chr4_4:78854131-78854150 None:intergenic 25.0%
! AAAGTAGGAGCAAAAAATAA+GGG - chr4_4:78854141-78854160 None:intergenic 25.0%
! AAAAGTAGGAGCAAAAAATA+AGG - chr4_4:78854142-78854161 None:intergenic 25.0%
! TTTGAAGGGAAAAAAAAAGT+AGG - chr4_4:78854156-78854175 None:intergenic 25.0%
!! CAATCAAACAAGAATTTTGA+AGG - chr4_4:78854171-78854190 None:intergenic 25.0%
!! ATTGTTTATTTGTCTTTTGC+AGG - chr4_4:78854392-78854411 None:intergenic 25.0%
! GATCATTAAAAGTAAAAGCT+TGG + chr4_4:78854494-78854513 Msa0705990:CDS 25.0%
!! TTTTAACAGAATTCACACTA+AGG + chr4_4:78854608-78854627 Msa0705990:CDS 25.0%
! TCAATACAAAAATCAATCAC+AGG - chr4_4:78854636-78854655 None:intergenic 25.0%
! AAATGTGACCAGATAATATA+TGG + chr4_4:78854689-78854708 Msa0705990:exon 25.0%
! AATGTGACCAGATAATATAT+GGG + chr4_4:78854690-78854709 Msa0705990:exon 25.0%
!!! AAAGATTTTCAAGTGTCAAT+AGG - chr4_4:78855111-78855130 None:intergenic 25.0%
! TATATATTATCCCATTGACA+TGG - chr4_4:78855198-78855217 None:intergenic 25.0%
! ATAGAAAAGAGATTGATGTT+TGG + chr4_4:78855233-78855252 Msa0705990:three_prime_UTR 25.0%
!! GAAAGAATAGGTTGAAGTTT+TGG - chr4_4:78847614-78847633 None:intergenic 30.0%
TTAAGCAAGAAAAACTTGAG+TGG - chr4_4:78847711-78847730 None:intergenic 30.0%
! CTTATTACCTTTTGTAGACT+TGG - chr4_4:78847767-78847786 None:intergenic 30.0%
CAAGTCTACAAAAGGTAATA+AGG + chr4_4:78847765-78847784 Msa0705990:CDS 30.0%
! TAATAAGGCTTTAACCAAGA+AGG + chr4_4:78847780-78847799 Msa0705990:CDS 30.0%
CACTATGGTAATCATAAATC+TGG + chr4_4:78847808-78847827 Msa0705990:CDS 30.0%
AGGAATGATGATTTCTATGA+TGG + chr4_4:78847952-78847971 Msa0705990:CDS 30.0%
GGAATGATGATTTCTATGAT+GGG + chr4_4:78847953-78847972 Msa0705990:CDS 30.0%
CTATGAAACAAACAAGAGAA+TGG - chr4_4:78848066-78848085 None:intergenic 30.0%
GTGCTTATGGAAATAGTTTA+TGG + chr4_4:78848186-78848205 Msa0705990:intron 30.0%
TAATTGATCAAGACCTTGTT+GGG - chr4_4:78848351-78848370 None:intergenic 30.0%
AAACATATTGTAATTGGCGA+TGG + chr4_4:78848408-78848427 Msa0705990:intron 30.0%
GATTGAGTTTAGATAGATAG+AGG + chr4_4:78848430-78848449 Msa0705990:intron 30.0%
!!! GTTGTTTTTGAATTATGAGC+TGG + chr4_4:78848498-78848517 Msa0705990:intron 30.0%
AGCAATTGGGAATGAAATTT+CGG + chr4_4:78848522-78848541 Msa0705990:intron 30.0%
! CAAATTGAATGGATAGCTTT+TGG + chr4_4:78848574-78848593 Msa0705990:intron 30.0%
! AATTGAATGGATAGCTTTTG+GGG + chr4_4:78848576-78848595 Msa0705990:intron 30.0%
!! AATGCAAGGATTGATTTTTG+AGG + chr4_4:78848608-78848627 Msa0705990:intron 30.0%
!!! AGGATTGATTTTTGAGGTTT+TGG + chr4_4:78848614-78848633 Msa0705990:intron 30.0%
!!! TGATTTTTGAGGTTTTGGAA+TGG + chr4_4:78848619-78848638 Msa0705990:intron 30.0%
GCTAAATGGGAAAGATTATT+TGG - chr4_4:78848675-78848694 None:intergenic 30.0%
TAGAGTACAAACTGCTAAAT+GGG - chr4_4:78848688-78848707 None:intergenic 30.0%
TGATAGGAACTTCGATATTA+TGG + chr4_4:78848771-78848790 Msa0705990:intron 30.0%
GATAGGAACTTCGATATTAT+GGG + chr4_4:78848772-78848791 Msa0705990:intron 30.0%
ATAGGAACTTCGATATTATG+GGG + chr4_4:78848773-78848792 Msa0705990:intron 30.0%
CTAAAAATCTAGCTATCAAG+GGG - chr4_4:78848863-78848882 None:intergenic 30.0%
CCTAAAAATCTAGCTATCAA+GGG - chr4_4:78848864-78848883 None:intergenic 30.0%
!! CCTTGATAGCTAGATTTTTA+GGG + chr4_4:78848862-78848881 Msa0705990:intron 30.0%
GTGTTACACATTAAACAGAA+AGG + chr4_4:78848957-78848976 Msa0705990:intron 30.0%
AAAGTAACAGAAAAGATAGG+AGG - chr4_4:78849007-78849026 None:intergenic 30.0%
AAAAATGTAACATGTGGTTG+TGG - chr4_4:78849057-78849076 None:intergenic 30.0%
AATGAAAACAGTCCAGAAAA+AGG + chr4_4:78849340-78849359 Msa0705990:intron 30.0%
ATGAAAACAGTCCAGAAAAA+GGG + chr4_4:78849341-78849360 Msa0705990:intron 30.0%
CTGATAAACTCAGAGAAATT+AGG - chr4_4:78849381-78849400 None:intergenic 30.0%
AAATTTCTGAACCAAGTGAA+AGG + chr4_4:78849508-78849527 Msa0705990:intron 30.0%
AATTTCTGAACCAAGTGAAA+GGG + chr4_4:78849509-78849528 Msa0705990:intron 30.0%
GACTAATGTCTTTCTATTTC+AGG + chr4_4:78849563-78849582 Msa0705990:intron 30.0%
AAATACTTTCAATTCATCCC+TGG - chr4_4:78850012-78850031 None:intergenic 30.0%
!! TTATTTTTCCATGCATTGCA+AGG - chr4_4:78850149-78850168 None:intergenic 30.0%
TCAAAGACAAACAAAAGAAG+AGG + chr4_4:78850237-78850256 Msa0705990:CDS 30.0%
! GATGAGTTTAGTTCAACATA+CGG + chr4_4:78850282-78850301 Msa0705990:CDS 30.0%
TTTGTCAAAATGTACTGTTG+AGG + chr4_4:78850585-78850604 Msa0705990:intron 30.0%
TTGTCAAAATGTACTGTTGA+GGG + chr4_4:78850586-78850605 Msa0705990:intron 30.0%
TTGCATGTCAATTGAATAGA+GGG + chr4_4:78850651-78850670 Msa0705990:intron 30.0%
TATAGCTGATCTTACTAAGT+GGG - chr4_4:78850765-78850784 None:intergenic 30.0%
ATATAGCTGATCTTACTAAG+TGG - chr4_4:78850766-78850785 None:intergenic 30.0%
ACTTAGTAAGATCAGCTATA+TGG + chr4_4:78850765-78850784 Msa0705990:intron 30.0%
! TATTCCCGTATAGTCTTTTT+AGG + chr4_4:78850860-78850879 Msa0705990:intron 30.0%
AAGACCTAAAAAGACTATAC+GGG - chr4_4:78850867-78850886 None:intergenic 30.0%
GAAGACCTAAAAAGACTATA+CGG - chr4_4:78850868-78850887 None:intergenic 30.0%
TAGAAAAGAATGTGGAAACT+TGG - chr4_4:78850985-78851004 None:intergenic 30.0%
AAATGATAACATTGGAGACA+GGG - chr4_4:78851026-78851045 None:intergenic 30.0%
AGGAGTAGAAATGATAACAT+TGG - chr4_4:78851034-78851053 None:intergenic 30.0%
!! ACTTCGTTTTATTCTCGTAT+TGG + chr4_4:78851105-78851124 Msa0705990:intron 30.0%
AAATCTTTCTTTATGGTCTC+AGG + chr4_4:78851515-78851534 Msa0705990:intron 30.0%
CCAAAAAGAATATGCAAATC+AGG - chr4_4:78851817-78851836 None:intergenic 30.0%
!! CCTGATTTGCATATTCTTTT+TGG + chr4_4:78851814-78851833 Msa0705990:intron 30.0%
! TTTATGAAAGCACAAAGAGA+TGG + chr4_4:78851841-78851860 Msa0705990:intron 30.0%
ACAATTCTTCTGTAGATGAA+TGG + chr4_4:78852096-78852115 Msa0705990:intron 30.0%
CAATTCTTCTGTAGATGAAT+GGG + chr4_4:78852097-78852116 Msa0705990:intron 30.0%
!!! GACTCTAAGATGTTTTTTAC+TGG + chr4_4:78852208-78852227 Msa0705990:intron 30.0%
TGCTCAAAATTAATCAACCT+CGG - chr4_4:78852234-78852253 None:intergenic 30.0%
TTATCTCCAAATGCAAAAAG+TGG - chr4_4:78852335-78852354 None:intergenic 30.0%
! AAGGCTGAAATTTGTTTCTT+TGG - chr4_4:78852524-78852543 None:intergenic 30.0%
! ATTTTGCTTCATAACTGCAA+TGG + chr4_4:78852679-78852698 Msa0705990:intron 30.0%
! TTTTGCTTCATAACTGCAAT+GGG + chr4_4:78852680-78852699 Msa0705990:intron 30.0%
TGGTTCGAATAAATGGTTTA+CGG - chr4_4:78852732-78852751 None:intergenic 30.0%
! TACTTACTAGAGTATCCATT+TGG - chr4_4:78852816-78852835 None:intergenic 30.0%
ATACTGATAAAGCAAACTCT+TGG - chr4_4:78852879-78852898 None:intergenic 30.0%
! AAGCTTGTGTTCATTTTGTT+AGG + chr4_4:78853221-78853240 Msa0705990:intron 30.0%
AACTGAGAAAATAGTGGTTT+AGG + chr4_4:78853410-78853429 Msa0705990:intron 30.0%
CTATAACTGTAGAATGTACA+AGG + chr4_4:78853563-78853582 Msa0705990:intron 30.0%
AGGTAGTAACGAAAATCTTA+TGG - chr4_4:78853649-78853668 None:intergenic 30.0%
! ATTTTCGTTACTACCTTAGT+AGG + chr4_4:78853653-78853672 Msa0705990:intron 30.0%
AGATGGAAAAAACATTGCAT+TGG + chr4_4:78853864-78853883 Msa0705990:CDS 30.0%
ATATTCTTGAACTTCTCTTG+TGG + chr4_4:78854283-78854302 Msa0705990:CDS 30.0%
AGTAACAAAATTCCTGTTAG+AGG + chr4_4:78854471-78854490 Msa0705990:CDS 30.0%
GTAACAAAATTCCTGTTAGA+GGG + chr4_4:78854472-78854491 Msa0705990:CDS 30.0%
! TATTGACAAAAAGAGAGCAT+TGG + chr4_4:78854650-78854669 Msa0705990:CDS 30.0%
GAATAGTCCCATATATTATC+TGG - chr4_4:78854700-78854719 None:intergenic 30.0%
!! TTAATCGCCTTTGAAATGAA+AGG + chr4_4:78854720-78854739 Msa0705990:three_prime_UTR 30.0%
!! TAATCGCCTTTGAAATGAAA+GGG + chr4_4:78854721-78854740 Msa0705990:three_prime_UTR 30.0%
! TTTCAAGTGTCAATAGGTAT+AGG - chr4_4:78855105-78855124 None:intergenic 30.0%
AAGACAATCAAAGAGACATG+AGG - chr4_4:78847443-78847462 None:intergenic 35.0%
GTGTGGTAACTGAATGAAAA+AGG - chr4_4:78847636-78847655 None:intergenic 35.0%
CTTTGTTCCAAGTCTACAAA+AGG + chr4_4:78847757-78847776 Msa0705990:CDS 35.0%
GGTAATCATAAATCTGGTGT+TGG + chr4_4:78847814-78847833 Msa0705990:CDS 35.0%
TAGTGATTTGACAAGTGCAA+AGG + chr4_4:78847864-78847883 Msa0705990:CDS 35.0%
ACACACTTGTGAGACTATTT+GGG + chr4_4:78848162-78848181 Msa0705990:intron 35.0%
AATAAGCCGAAAACAGCTTA+TGG - chr4_4:78848217-78848236 None:intergenic 35.0%
! TGTTTTCGTGTAAGCTATCA+TGG - chr4_4:78848252-78848271 None:intergenic 35.0%
TTAAGTCGTTTATCCCAACA+AGG + chr4_4:78848335-78848354 Msa0705990:intron 35.0%
CTAATTGATCAAGACCTTGT+TGG - chr4_4:78848352-78848371 None:intergenic 35.0%
AATTATGAGCTGGAAGCAAT+TGG + chr4_4:78848508-78848527 Msa0705990:intron 35.0%
ATTATGAGCTGGAAGCAATT+GGG + chr4_4:78848509-78848528 Msa0705990:intron 35.0%
TTGGGAATGAAATTTCGGTT+AGG + chr4_4:78848527-78848546 Msa0705990:intron 35.0%
GTAGAGTACAAACTGCTAAA+TGG - chr4_4:78848689-78848708 None:intergenic 35.0%
TGTACAACTGGAATGAAGTT+TGG - chr4_4:78848730-78848749 None:intergenic 35.0%
AAGTTCCTATCAGATTCTTG+AGG - chr4_4:78848763-78848782 None:intergenic 35.0%
!! CCCTTGATAGCTAGATTTTT+AGG + chr4_4:78848861-78848880 Msa0705990:intron 35.0%
CCCTAAAAATCTAGCTATCA+AGG - chr4_4:78848865-78848884 None:intergenic 35.0%
!! TGATAGCTAGATTTTTAGGG+TGG + chr4_4:78848865-78848884 Msa0705990:intron 35.0%
!!! GATAGCTAGATTTTTAGGGT+GGG + chr4_4:78848866-78848885 Msa0705990:intron 35.0%
GGGAAAGTAACAGAAAAGAT+AGG - chr4_4:78849010-78849029 None:intergenic 35.0%
! TACTTTCCCATTTTCACTGT+TGG + chr4_4:78849021-78849040 Msa0705990:intron 35.0%
! CTCACTCTCAATTTGAAATG+AGG - chr4_4:78849089-78849108 None:intergenic 35.0%
! AAAACTGTGATCCCTTTTTC+TGG - chr4_4:78849355-78849374 None:intergenic 35.0%
!! TCTTAAACATTGGTTCCTCA+TGG - chr4_4:78849426-78849445 None:intergenic 35.0%
ATTTCTGAACCAAGTGAAAG+GGG + chr4_4:78849510-78849529 Msa0705990:intron 35.0%
TCAAATTTACCCCTTTCACT+TGG - chr4_4:78849522-78849541 None:intergenic 35.0%
!!! TCGTCATTTTTCTCCAAAGT+TGG - chr4_4:78849545-78849564 None:intergenic 35.0%
ACAAATTTAAATTCTGGCGG+TGG + chr4_4:78849675-78849694 Msa0705990:CDS 35.0%
!!! AGTTGGTATTTTAGCGTTTG+AGG + chr4_4:78849731-78849750 Msa0705990:CDS 35.0%
GTTGCAAACACTATTGTCAA+GGG + chr4_4:78849753-78849772 Msa0705990:CDS 35.0%
! GTTTGTTAATGGAATCTCTG+AGG - chr4_4:78849933-78849952 None:intergenic 35.0%
TACCAAAAATCAGAGCAAGT+TGG - chr4_4:78849984-78850003 None:intergenic 35.0%
!!! TGATTTTTGGTACGTTTCCA+GGG + chr4_4:78849992-78850011 Msa0705990:intron 35.0%
!!! AGGTGATTCGTTTTGGAAAT+CGG + chr4_4:78850039-78850058 Msa0705990:CDS 35.0%
TCTAAAGACACTACAACTTC+TGG - chr4_4:78850350-78850369 None:intergenic 35.0%
TAATTATTCTCGAACCGAAG+TGG + chr4_4:78850522-78850541 Msa0705990:intron 35.0%
GTTGCATGTCAATTGAATAG+AGG + chr4_4:78850650-78850669 Msa0705990:intron 35.0%
TGATCTTACTAAGTGGGATA+AGG - chr4_4:78850759-78850778 None:intergenic 35.0%
AGTAAGGAGAGTAGATCATA+TGG - chr4_4:78850918-78850937 None:intergenic 35.0%
ATGATCTACTCTCCTTACTA+CGG + chr4_4:78850919-78850938 Msa0705990:intron 35.0%
! TCCACATTCTTTTCTACGAT+AGG + chr4_4:78850989-78851008 Msa0705990:intron 35.0%
ACCTATCGTAGAAAAGAATG+TGG - chr4_4:78850993-78851012 None:intergenic 35.0%
GAAATGATAACATTGGAGAC+AGG - chr4_4:78851027-78851046 None:intergenic 35.0%
GTGGTAAGATTAGACAAGAT+AGG - chr4_4:78851054-78851073 None:intergenic 35.0%
TTATCATACAGCTGTAAGAC+TGG - chr4_4:78851168-78851187 None:intergenic 35.0%
!! TTCAAGTTGGATGGTTGAAA+TGG - chr4_4:78851249-78851268 None:intergenic 35.0%
! TGTTTTCTGCTGTACAATCA+AGG + chr4_4:78851401-78851420 Msa0705990:intron 35.0%
ATACCATGAGTTACATGCTT+TGG + chr4_4:78851542-78851561 Msa0705990:CDS 35.0%
TATCCAAAGCATGTAACTCA+TGG - chr4_4:78851548-78851567 None:intergenic 35.0%
! TAACATGCAACTCTTGTTTG+TGG + chr4_4:78851652-78851671 Msa0705990:intron 35.0%
! ATAAACCAAAAGTGTGTGCT+AGG - chr4_4:78851762-78851781 None:intergenic 35.0%
ATGATGAAGAGAGACAGTTT+GGG - chr4_4:78851966-78851985 None:intergenic 35.0%
TATGATGAAGAGAGACAGTT+TGG - chr4_4:78851967-78851986 None:intergenic 35.0%
ACTGTCTCTCTTCATCATAT+AGG + chr4_4:78851968-78851987 Msa0705990:intron 35.0%
TCATCTACAGAAGAATTGTG+TGG - chr4_4:78852095-78852114 None:intergenic 35.0%
ACTAGTTCCAGCATTATACA+TGG - chr4_4:78852183-78852202 None:intergenic 35.0%
!!! CATAGTCCACTTTTTGCATT+TGG + chr4_4:78852326-78852345 Msa0705990:CDS 35.0%
TTGCTGATGGTTCGAATAAA+TGG - chr4_4:78852739-78852758 None:intergenic 35.0%
TGCAAATATAGTGCTCCAAA+TGG + chr4_4:78852798-78852817 Msa0705990:CDS 35.0%
TCTTGGAACTTAACCATGTT+AGG - chr4_4:78852862-78852881 None:intergenic 35.0%
TTCAGCACATAAATCAGACA+TGG - chr4_4:78853189-78853208 None:intergenic 35.0%
TTCTATGCCTGCAAATACAA+GGG + chr4_4:78853257-78853276 Msa0705990:CDS 35.0%
TCTTCTGCAACATGAAATGT+AGG - chr4_4:78853339-78853358 None:intergenic 35.0%
TACATTTCATGTTGCAGAAG+AGG + chr4_4:78853338-78853357 Msa0705990:CDS 35.0%
TGAGAAAATAGTGGTTTAGG+CGG + chr4_4:78853413-78853432 Msa0705990:intron 35.0%
TGTAACATGCAGTTTCTGTT+TGG - chr4_4:78853488-78853507 None:intergenic 35.0%
! TGGATTAGAGTTACTTCCTT+TGG - chr4_4:78853629-78853648 None:intergenic 35.0%
ATTGAAAGTGGAAAGGTGAA+AGG - chr4_4:78853755-78853774 None:intergenic 35.0%
CACTGTAGCAGATATTAAAC+AGG + chr4_4:78853841-78853860 Msa0705990:CDS 35.0%
AGCAGATATTAAACAGGAGA+TGG + chr4_4:78853847-78853866 Msa0705990:CDS 35.0%
! GGAAAAAACATTGCATTGGT+TGG + chr4_4:78853868-78853887 Msa0705990:CDS 35.0%
TGTTTCAATCCGCATTACTT+CGG - chr4_4:78854229-78854248 None:intergenic 35.0%
TCACCATGCAGATAAAGAAA+AGG + chr4_4:78854251-78854270 Msa0705990:CDS 35.0%
! CTACCTTTTCTTTATCTGCA+TGG - chr4_4:78854257-78854276 None:intergenic 35.0%
TCTGTCATAAAGTCTCATGT+TGG + chr4_4:78854360-78854379 Msa0705990:CDS 35.0%
! CTTTTAATGATCCCTCTAAC+AGG - chr4_4:78854486-78854505 None:intergenic 35.0%
CTAATGAAGCTAAGAAATCC+AGG - chr4_4:78854845-78854864 None:intergenic 35.0%
CTGGATTTCTTAGCTTCATT+AGG + chr4_4:78854843-78854862 Msa0705990:three_prime_UTR 35.0%
TAGATAGTAGTCCATGTCAA+TGG + chr4_4:78855184-78855203 Msa0705990:intron 35.0%
AGATAGTAGTCCATGTCAAT+GGG + chr4_4:78855185-78855204 Msa0705990:intron 35.0%
! CGCAAATACTCGTTGTTGTT+TGG + chr4_4:78847370-78847389 Msa0705990:five_prime_UTR 40.0%
ACAATCAAAGAGACATGAGG+CGG - chr4_4:78847440-78847459 None:intergenic 40.0%
ACCAAGAAGGAAGAACACTA+TGG + chr4_4:78847793-78847812 Msa0705990:CDS 40.0%
ACCATAGTGTTCTTCCTTCT+TGG - chr4_4:78847797-78847816 None:intergenic 40.0%
TGATTTGACAAGTGCAAAGG+AGG + chr4_4:78847867-78847886 Msa0705990:CDS 40.0%
GATTTGACAAGTGCAAAGGA+GGG + chr4_4:78847868-78847887 Msa0705990:CDS 40.0%
GGGTGTGGATAGTAAGAAAA+AGG + chr4_4:78847888-78847907 Msa0705990:CDS 40.0%
GAAGAAGAAGAAGAAGCTGT+TGG + chr4_4:78847913-78847932 Msa0705990:CDS 40.0%
GAAAAAGAATCAGCATAGCG+TGG - chr4_4:78847982-78848001 None:intergenic 40.0%
GACACACTTGTGAGACTATT+TGG + chr4_4:78848161-78848180 Msa0705990:intron 40.0%
!! AGACTATTTGGGAGTGCTTA+TGG + chr4_4:78848173-78848192 Msa0705990:intron 40.0%
!! GCATGTCCATAAGCTGTTTT+CGG + chr4_4:78848208-78848227 Msa0705990:intron 40.0%
TGGGGAACGAAATTAATGCA+AGG + chr4_4:78848594-78848613 Msa0705990:intron 40.0%
CATTCTGTACTACAGGATGT+GGG - chr4_4:78848808-78848827 None:intergenic 40.0%
ATCCTGTAGTACAGAATGCT+CGG + chr4_4:78848810-78848829 Msa0705990:intron 40.0%
!! ATGAGAAGTATCCAAGCACT+TGG - chr4_4:78848896-78848915 None:intergenic 40.0%
GTGCTTGGATACTTCTCATT+TGG + chr4_4:78848897-78848916 Msa0705990:intron 40.0%
CTGACAAGTGACAATCAACT+CGG - chr4_4:78848926-78848945 None:intergenic 40.0%
! AGTTGATTGTCACTTGTCAG+TGG + chr4_4:78848926-78848945 Msa0705990:intron 40.0%
ACAGAAAAGATAGGAGGTAG+TGG - chr4_4:78849001-78849020 None:intergenic 40.0%
!! CTGATTTGGTGCTGATTTGT+TGG + chr4_4:78849178-78849197 Msa0705990:intron 40.0%
TCAAGTATGTGCAAATCTGC+TGG - chr4_4:78849212-78849231 None:intergenic 40.0%
GTTCACTCTGTTAAACTCAC+AGG - chr4_4:78849404-78849423 None:intergenic 40.0%
GTTTAACAGAGTGAACCATG+AGG + chr4_4:78849408-78849427 Msa0705990:intron 40.0%
GGGGTAAATTTGACCAACTT+TGG + chr4_4:78849529-78849548 Msa0705990:intron 40.0%
! TTGACGTTCTAGACACACTT+GGG + chr4_4:78849643-78849662 Msa0705990:CDS 40.0%
TGCATATGGAGCTGTAACAA+AGG + chr4_4:78849701-78849720 Msa0705990:CDS 40.0%
GCATATGGAGCTGTAACAAA+GGG + chr4_4:78849702-78849721 Msa0705990:CDS 40.0%
CATATGGAGCTGTAACAAAG+GGG + chr4_4:78849703-78849722 Msa0705990:CDS 40.0%
GGTTGCAAACACTATTGTCA+AGG + chr4_4:78849752-78849771 Msa0705990:CDS 40.0%
!! AGAAGAGGTGCTTAAGTTAG+AGG + chr4_4:78849824-78849843 Msa0705990:CDS 40.0%
AGGATATGGACGAACTTCTA+AGG + chr4_4:78849868-78849887 Msa0705990:CDS 40.0%
!! TGCCAACTTGCTCTGATTTT+TGG + chr4_4:78849979-78849998 Msa0705990:intron 40.0%
!!! CTGATTTTTGGTACGTTTCC+AGG + chr4_4:78849991-78850010 Msa0705990:intron 40.0%
! TCTGATGAGGTGATTCGTTT+TGG + chr4_4:78850032-78850051 Msa0705990:CDS 40.0%
!!! TCGTTTTGGAAATCGGTCAA+AGG + chr4_4:78850046-78850065 Msa0705990:CDS 40.0%
!!! GTTTTTAGCCTTGCAATGCA+TGG + chr4_4:78850138-78850157 Msa0705990:intron 40.0%
! GAGTTTAGTTCAACATACGG+CGG + chr4_4:78850285-78850304 Msa0705990:CDS 40.0%
TGTTGAGGGACTTGATTGAA+AGG + chr4_4:78850600-78850619 Msa0705990:intron 40.0%
TACTAAGTGGGATAAGGCTT+TGG - chr4_4:78850753-78850772 None:intergenic 40.0%
AGTCAAATCACTAGAGGTAG+AGG - chr4_4:78850890-78850909 None:intergenic 40.0%
AGGAGAGTAGATCATATGGA+GGG - chr4_4:78850914-78850933 None:intergenic 40.0%
AAGGAGAGTAGATCATATGG+AGG - chr4_4:78850915-78850934 None:intergenic 40.0%
GACTTGTACATTCCGTAGTA+AGG - chr4_4:78850934-78850953 None:intergenic 40.0%
AAACTTGGCTTAGGTGGTTT+GGG - chr4_4:78850970-78850989 None:intergenic 40.0%
AGAATGTGGAAACTTGGCTT+AGG - chr4_4:78850979-78850998 None:intergenic 40.0%
ATAACATTGGAGACAGGGTT+GGG - chr4_4:78851021-78851040 None:intergenic 40.0%
AGGATGTTGTGTTGGATATG+TGG - chr4_4:78851073-78851092 None:intergenic 40.0%
! TAAGACTGGTGACGTTGTAT+GGG - chr4_4:78851154-78851173 None:intergenic 40.0%
AATTTACCCTTCAACTCGAG+CGG + chr4_4:78851187-78851206 Msa0705990:intron 40.0%
TGTATCACATAGAACACCTG+AGG + chr4_4:78851216-78851235 Msa0705990:intron 40.0%
AAGTTGGATGGTTGAAATGG+AGG - chr4_4:78851246-78851265 None:intergenic 40.0%
ACCATCCAACTTGAATTCGA+TGG + chr4_4:78851254-78851273 Msa0705990:intron 40.0%
!! ACCATCGAATTCAAGTTGGA+TGG - chr4_4:78851258-78851277 None:intergenic 40.0%
GCAAACCATCGAATTCAAGT+TGG - chr4_4:78851262-78851281 None:intergenic 40.0%
TTTCTCCTTCGTTTCAGCAT+AGG + chr4_4:78851290-78851309 Msa0705990:intron 40.0%
ACTTTCCTATGCTGAAACGA+AGG - chr4_4:78851298-78851317 None:intergenic 40.0%
TTATCAGCATAAGCGTGATG+AGG + chr4_4:78851581-78851600 Msa0705990:CDS 40.0%
AATTCAAGTGCAGCTCAAAG+CGG + chr4_4:78851609-78851628 Msa0705990:CDS 40.0%
! ATTTGCCTAGCACACACTTT+TGG + chr4_4:78851754-78851773 Msa0705990:intron 40.0%
ACTTAGAAGCCAAAAGAAGC+AGG + chr4_4:78852018-78852037 Msa0705990:CDS 40.0%
! AGTGCTTAACCTGCTTCTTT+TGG - chr4_4:78852030-78852049 None:intergenic 40.0%
ACTTGAAGAAGAAGTCACTC+TGG + chr4_4:78852047-78852066 Msa0705990:CDS 40.0%
TCTTCTGTAGATGAATGGGA+TGG + chr4_4:78852101-78852120 Msa0705990:intron 40.0%
!!! AAGATGTTTTTTACTGGCCG+AGG + chr4_4:78852214-78852233 Msa0705990:intron 40.0%
TGCAGGTATGTACTCACTAA+AGG + chr4_4:78852371-78852390 Msa0705990:intron 40.0%
!! TGTACTCACTAAAGGCATTC+AGG + chr4_4:78852379-78852398 Msa0705990:intron 40.0%
ATCAGCAATCGCCAAAGATT+GGG + chr4_4:78852751-78852770 Msa0705990:CDS 40.0%
!! CATGAGCTCTAAAGTGATTC+AGG - chr4_4:78853029-78853048 None:intergenic 40.0%
!! CTGAATCACTTTAGAGCTCA+TGG + chr4_4:78853027-78853046 Msa0705990:intron 40.0%
TGTATTTGCAGGCATAGAAC+TGG - chr4_4:78853256-78853275 None:intergenic 40.0%
GTTCTATGCCTGCAAATACA+AGG + chr4_4:78853256-78853275 Msa0705990:CDS 40.0%
AGTGTATCCCTTGTATTTGC+AGG - chr4_4:78853267-78853286 None:intergenic 40.0%
! AGAGGTATGTTCTCATCTGT+TGG + chr4_4:78853356-78853375 Msa0705990:intron 40.0%
TTCTGCATGACATTCAATGC+TGG - chr4_4:78853523-78853542 None:intergenic 40.0%
CAGTGTGCTAAAACCTACTA+AGG - chr4_4:78853669-78853688 None:intergenic 40.0%
AAAACTGCGGTGATTGAAAG+TGG - chr4_4:78853767-78853786 None:intergenic 40.0%
TTGGCTGTGTTTGTAGCAAT+TGG - chr4_4:78853896-78853915 None:intergenic 40.0%
ACAAAGCCAGACATCTTACT+TGG - chr4_4:78853915-78853934 None:intergenic 40.0%
CTATGAAGACCGAAGTAATG+CGG + chr4_4:78854217-78854236 Msa0705990:CDS 40.0%
GGACTTTGACAGTCTGAAAA+TGG + chr4_4:78854515-78854534 Msa0705990:CDS 40.0%
CTACCACCCTTTCATTTCAA+AGG - chr4_4:78854730-78854749 None:intergenic 40.0%
! TATTCACGCAGCTAGTGTTT+TGG + chr4_4:78854790-78854809 Msa0705990:three_prime_UTR 40.0%
!! GTGTTTTGGATGCCAGATTT+TGG + chr4_4:78854804-78854823 Msa0705990:three_prime_UTR 40.0%
CTAGAAGATCTGCCAAAATC+TGG - chr4_4:78854819-78854838 None:intergenic 40.0%
TCTTAGCTTCATTAGGAGCT+TGG + chr4_4:78854850-78854869 Msa0705990:three_prime_UTR 40.0%
! CTTCATTAGGAGCTTGGTTT+TGG + chr4_4:78854856-78854875 Msa0705990:three_prime_UTR 40.0%
! TCCAATAGAAGTGTGCATTG+CGG - chr4_4:78854970-78854989 None:intergenic 40.0%
TGCAATGCAGAACTACCATA+GGG - chr4_4:78855049-78855068 None:intergenic 40.0%
ATGCAATGCAGAACTACCAT+AGG - chr4_4:78855050-78855069 None:intergenic 40.0%
!! AACCAATTGGGTGTTGAGTG+TGG + chr4_4:78847515-78847534 Msa0705990:five_prime_UTR 45.0%
!! TTGGTGTTGCTGCAGAAACT+AGG + chr4_4:78847932-78847951 Msa0705990:CDS 45.0%
AAGACAAGCTGCTGTTGCTA+AGG + chr4_4:78848026-78848045 Msa0705990:CDS 45.0%
!! CACAAGTGTGTCGTTTATGC+CGG - chr4_4:78848153-78848172 None:intergenic 45.0%
GCTCACCTCAAGAATCTGAT+AGG + chr4_4:78848755-78848774 Msa0705990:intron 45.0%
TACTACAGGATGTGGGACTT+GGG - chr4_4:78848801-78848820 None:intergenic 45.0%
GCATTCTGTACTACAGGATG+TGG - chr4_4:78848809-78848828 None:intergenic 45.0%
!! GATAGGAGGTAGTGGAACTT+GGG - chr4_4:78848993-78849012 None:intergenic 45.0%
!! AGATAGGAGGTAGTGGAACT+TGG - chr4_4:78848994-78849013 None:intergenic 45.0%
!! AGTGAGTTTTGTCCAACGTG+AGG + chr4_4:78849103-78849122 Msa0705990:intron 45.0%
! CTTTCTATTTCAGGTCTCCG+AGG + chr4_4:78849572-78849591 Msa0705990:intron 45.0%
AGAGCTGGCACTATTGGATT+CGG + chr4_4:78849612-78849631 Msa0705990:CDS 45.0%
! GTTGACGTTCTAGACACACT+TGG + chr4_4:78849642-78849661 Msa0705990:CDS 45.0%
GTAACAAAGGGGAACGAAGT+TGG + chr4_4:78849714-78849733 Msa0705990:CDS 45.0%
! TGTCAAGGGCTTTAGTCTCA+TGG + chr4_4:78849767-78849786 Msa0705990:CDS 45.0%
TTGCTGCAGACAAGAGGTAA+TGG + chr4_4:78849895-78849914 Msa0705990:intron 45.0%
GAGGGTAGTCAAATCACTAG+AGG - chr4_4:78850896-78850915 None:intergenic 45.0%
GAAACTTGGCTTAGGTGGTT+TGG - chr4_4:78850971-78850990 None:intergenic 45.0%
ATGTGGAAACTTGGCTTAGG+TGG - chr4_4:78850976-78850995 None:intergenic 45.0%
TAACATTGGAGACAGGGTTG+GGG - chr4_4:78851020-78851039 None:intergenic 45.0%
GATAACATTGGAGACAGGGT+TGG - chr4_4:78851022-78851041 None:intergenic 45.0%
CAGAGATGAGGATGTTGTGT+TGG - chr4_4:78851081-78851100 None:intergenic 45.0%
AACGAAGTGTAGCAGAGATG+AGG - chr4_4:78851093-78851112 None:intergenic 45.0%
! GTAAGACTGGTGACGTTGTA+TGG - chr4_4:78851155-78851174 None:intergenic 45.0%
!! AAAGTACCGCTCGAGTTGAA+GGG - chr4_4:78851196-78851215 None:intergenic 45.0%
!! AAAAGTACCGCTCGAGTTGA+AGG - chr4_4:78851197-78851216 None:intergenic 45.0%
TGGATGGTTGAAATGGAGGA+TGG - chr4_4:78851242-78851261 None:intergenic 45.0%
CGATAGCCTGTCAATCTTGA+AGG + chr4_4:78851991-78852010 Msa0705990:CDS 45.0%
GTTCTGCCTTCAAGATTGAC+AGG - chr4_4:78852000-78852019 None:intergenic 45.0%
TGTCGATGGATATCTGCAGA+TGG + chr4_4:78852706-78852725 Msa0705990:intron 45.0%
CAATCTTTGGCGATTGCTGA+TGG - chr4_4:78852752-78852771 None:intergenic 45.0%
CATCAGCAATCGCCAAAGAT+TGG + chr4_4:78852750-78852769 Msa0705990:CDS 45.0%
! CTTTGGTAGCCTCCTTTGTT+TGG - chr4_4:78853612-78853631 None:intergenic 45.0%
CAAACAAAGGAGGCTACCAA+AGG + chr4_4:78853610-78853629 Msa0705990:intron 45.0%
TGCGGTGATTGAAAGTGGAA+AGG - chr4_4:78853762-78853781 None:intergenic 45.0%
TGAGACAGATAGCAACCACA+TGG - chr4_4:78853814-78853833 None:intergenic 45.0%
ACACAGCCAAGTAAGATGTC+TGG + chr4_4:78853906-78853925 Msa0705990:intron 45.0%
AATTGATGCAGAGCGCATCA+CGG + chr4_4:78854032-78854051 Msa0705990:intron 45.0%
!!! TTTTGGTTGGGTTGGAGAGT+GGG + chr4_4:78854055-78854074 Msa0705990:CDS 45.0%
! TGCTCATCGGTTGTTAGCAA+TGG - chr4_4:78854432-78854451 None:intergenic 45.0%
CTTCAGCATGATCTGCTCAT+CGG - chr4_4:78854445-78854464 None:intergenic 45.0%
CTCAACGACAAGTAGAAGCA+AGG + chr4_4:78854578-78854597 Msa0705990:CDS 45.0%
!! TCGCCTTTGAAATGAAAGGG+TGG + chr4_4:78854724-78854743 Msa0705990:three_prime_UTR 45.0%
GCAACATGAGGACAGAAGAA+TGG + chr4_4:78854749-78854768 Msa0705990:three_prime_UTR 45.0%
ACATATCGTCTTCACCACAG+AGG + chr4_4:78854905-78854924 Msa0705990:three_prime_UTR 45.0%
TATCGTCTCAACAACCTCTG+TGG - chr4_4:78854922-78854941 None:intergenic 45.0%
AGACGATACGCTTTCTTGTC+TGG + chr4_4:78854934-78854953 Msa0705990:three_prime_UTR 45.0%
ACCGCAATGCACACTTCTAT+TGG + chr4_4:78854966-78854985 Msa0705990:three_prime_UTR 45.0%
TGCACACTTCTATTGGAGCA+AGG + chr4_4:78854973-78854992 Msa0705990:three_prime_UTR 45.0%
ACACTTCTATTGGAGCAAGG+TGG + chr4_4:78854976-78854995 Msa0705990:three_prime_UTR 45.0%
TCTTGAGTGTATAGGCAGTG+AGG + chr4_4:78855015-78855034 Msa0705990:three_prime_UTR 45.0%
GTGTATAGGCAGTGAGGATT+TGG + chr4_4:78855021-78855040 Msa0705990:three_prime_UTR 45.0%
! AGTGAGGATTTGGTACCCTA+TGG + chr4_4:78855031-78855050 Msa0705990:three_prime_UTR 45.0%
!!! TTTTTTTTTTTTTAATTTTG+TGG + chr4_4:78851789-78851808 Msa0705990:intron 5.0%
TCATGTTCAACCTTCTCCGC+AGG - chr4_4:78847404-78847423 None:intergenic 50.0%
GTCCACACTCAACACCCAAT+TGG - chr4_4:78847520-78847539 None:intergenic 50.0%
GTACTACAGGATGTGGGACT+TGG - chr4_4:78848802-78848821 None:intergenic 50.0%
CACCGAGCATTCTGTACTAC+AGG - chr4_4:78848815-78848834 None:intergenic 50.0%
CTGTAGTACAGAATGCTCGG+TGG + chr4_4:78848813-78848832 Msa0705990:intron 50.0%
! TGCTCGGTGGAGCAGTTAAA+TGG + chr4_4:78848826-78848845 Msa0705990:intron 50.0%
GGTGGAGCAGTTAAATGGCT+TGG + chr4_4:78848831-78848850 Msa0705990:intron 50.0%
GAGCTGGCACTATTGGATTC+GGG + chr4_4:78849613-78849632 Msa0705990:CDS 50.0%
GGATTGTTGCTGCAGACAAG+AGG + chr4_4:78849889-78849908 Msa0705990:CDS 50.0%
ATCGGTCAAAGGATCCTCAG+TGG + chr4_4:78850057-78850076 Msa0705990:CDS 50.0%
! ACTGGTGACGTTGTATGGGA+CGG - chr4_4:78851150-78851169 None:intergenic 50.0%
TTGAAATGGAGGATGGCCTC+AGG - chr4_4:78851235-78851254 None:intergenic 50.0%
TCAGCATAAGCGTGATGAGG+AGG + chr4_4:78851584-78851603 Msa0705990:CDS 50.0%
GTCACTCTGGTCCAGAAGTT+TGG + chr4_4:78852060-78852079 Msa0705990:CDS 50.0%
ACTCTGGTCCAGAAGTTTGG+AGG + chr4_4:78852063-78852082 Msa0705990:CDS 50.0%
GTACATACCTGCACTGCCAA+AGG - chr4_4:78852364-78852383 None:intergenic 50.0%
GGCATTCAGGCACTCACTAA+AGG + chr4_4:78852392-78852411 Msa0705990:intron 50.0%
!! GGCACTCACTAAAGGCATTC+AGG + chr4_4:78852400-78852419 Msa0705990:intron 50.0%
TAATGCAAAGAGAGCCCTGC+AGG - chr4_4:78852778-78852797 None:intergenic 50.0%
TGCAGGCATAGAACTGGATC+TGG - chr4_4:78853250-78853269 None:intergenic 50.0%
CAAAAAGGGCCGCCAAACAA+AGG + chr4_4:78853597-78853616 Msa0705990:intron 50.0%
! TGGTAGCCTCCTTTGTTTGG+CGG - chr4_4:78853609-78853628 None:intergenic 50.0%
!!! AGCGCATCACGGTTTTGGTT+GGG + chr4_4:78854043-78854062 Msa0705990:CDS 50.0%
!!! CATCACGGTTTTGGTTGGGT+TGG + chr4_4:78854047-78854066 Msa0705990:CDS 50.0%
!!! GTTTTGGTTGGGTTGGAGAG+TGG + chr4_4:78854054-78854073 Msa0705990:CDS 50.0%
GACTTCTCCAACATCACCTC+CGG - chr4_4:78854337-78854356 None:intergenic 50.0%
CGATGAGCAGATCATGCTGA+AGG + chr4_4:78854443-78854462 Msa0705990:CDS 50.0%
GAAAGGGTGGTAGCAACATG+AGG + chr4_4:78854737-78854756 Msa0705990:three_prime_UTR 50.0%
TGGCAGATCTTCTAGCATCC+TGG + chr4_4:78854824-78854843 Msa0705990:three_prime_UTR 50.0%
TTGTTTGGTACGCCCTCCTG+CGG + chr4_4:78847385-78847404 Msa0705990:five_prime_UTR 55.0%
GTTCAACCTTCTCCGCAGGA+GGG - chr4_4:78847400-78847419 None:intergenic 55.0%
TGTTCAACCTTCTCCGCAGG+AGG - chr4_4:78847401-78847420 None:intergenic 55.0%
GACAAGTGCAAAGGAGGGTG+TGG + chr4_4:78847873-78847892 Msa0705990:CDS 55.0%
GGTGAGCGAGTGTGTACAAC+TGG - chr4_4:78848742-78848761 None:intergenic 55.0%
CTGCGTTTCTCTCCTCACGT+TGG - chr4_4:78849118-78849137 None:intergenic 55.0%
CAATAGTGCCAGCTCTGCCT+AGG - chr4_4:78849608-78849627 None:intergenic 55.0%
CTAGGCAGAGCTGGCACTAT+TGG + chr4_4:78849606-78849625 Msa0705990:CDS 55.0%
! TCTGGCGGTGGCTTTGCATA+TGG + chr4_4:78849687-78849706 Msa0705990:CDS 55.0%
GGATCCTCAGTGGCACAACT+TGG + chr4_4:78850067-78850086 Msa0705990:CDS 55.0%
! CGATCCAAGTTGTGCCACTG+AGG - chr4_4:78850074-78850093 None:intergenic 55.0%
! TGGTGACGTTGTATGGGACG+GGG - chr4_4:78851148-78851167 None:intergenic 55.0%
! CTGGTGACGTTGTATGGGAC+GGG - chr4_4:78851149-78851168 None:intergenic 55.0%
CTGGTCCAGAAGTTTGGAGG+AGG + chr4_4:78852066-78852085 Msa0705990:CDS 55.0%
GGCTACCTCCTCCAAACTTC+TGG - chr4_4:78852074-78852093 None:intergenic 55.0%
! ACTGCAATGGGTGCTGTCGA+TGG + chr4_4:78852692-78852711 Msa0705990:intron 55.0%
GCCAAAGATTGGGTCCTGCA+GGG + chr4_4:78852761-78852780 Msa0705990:CDS 55.0%
AAAGGGCCGCCAAACAAAGG+AGG + chr4_4:78853600-78853619 Msa0705990:intron 55.0%
! TGCAGAGCGCATCACGGTTT+TGG + chr4_4:78854038-78854057 Msa0705990:intron 55.0%
!! GAGCGCATCACGGTTTTGGT+TGG + chr4_4:78854042-78854061 Msa0705990:intron 55.0%
TTGGAGAGTGGGCAAGCACT+GGG + chr4_4:78854066-78854085 Msa0705990:CDS 55.0%
TCTCTTGTGGCTTCACCGCT+TGG + chr4_4:78854296-78854315 Msa0705990:CDS 55.0%
CCTTACTCTTGACCGCCAAG+CGG - chr4_4:78854314-78854333 None:intergenic 55.0%
TTGGCGGTCAAGAGTAAGGC+CGG + chr4_4:78854315-78854334 Msa0705990:CDS 55.0%
AGTAAGGCCGGAGGTGATGT+TGG + chr4_4:78854327-78854346 Msa0705990:CDS 55.0%
CATGAGGCGGCGATTGTGGT+CGG - chr4_4:78847427-78847446 None:intergenic 60.0%
GAGACATGAGGCGGCGATTG+TGG - chr4_4:78847431-78847450 None:intergenic 60.0%
! GGGTGGGTTCACCAAGTGCT+TGG + chr4_4:78848882-78848901 Msa0705990:intron 60.0%
TCCGAGGTGAGTTCACGCCT+AGG + chr4_4:78849588-78849607 Msa0705990:CDS 60.0%
GCCTAGGCGTGAACTCACCT+CGG - chr4_4:78849592-78849611 None:intergenic 60.0%
AGTTCACGCCTAGGCAGAGC+TGG + chr4_4:78849597-78849616 Msa0705990:CDS 60.0%
!! GTATGGGACGGGGTGTTGGA+CGG - chr4_4:78851138-78851157 None:intergenic 60.0%
CGTTGTATGGGACGGGGTGT+TGG - chr4_4:78851142-78851161 None:intergenic 60.0%
CGCCAAAGATTGGGTCCTGC+AGG + chr4_4:78852760-78852779 Msa0705990:CDS 60.0%
GCCCTGCAGGACCCAATCTT+TGG - chr4_4:78852765-78852784 None:intergenic 60.0%
GTTGGAGAGTGGGCAAGCAC+TGG + chr4_4:78854065-78854084 Msa0705990:CDS 60.0%
CTTGTGGCTTCACCGCTTGG+CGG + chr4_4:78854299-78854318 Msa0705990:CDS 60.0%
CCGCTTGGCGGTCAAGAGTA+AGG + chr4_4:78854311-78854330 Msa0705990:CDS 60.0%
GCGGTCAAGAGTAAGGCCGG+AGG + chr4_4:78854318-78854337 Msa0705990:CDS 65.0%
GGTACGCCCTCCTGCGGAGA+AGG + chr4_4:78847391-78847410 Msa0705990:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 78847359 78855256 78847359 ID=Msa0705990;Name=Msa0705990
chr4_4 mRNA 78847359 78855256 78847359 ID=Msa0705990-mRNA-1;Parent=Msa0705990;Name=Msa0705990-mRNA-1;_AED=0.07;_eAED=0.07;_QI=389|1|1|1|0.91|0.84|13|527|640
chr4_4 exon 78847359 78848047 78847359 ID=Msa0705990-mRNA-1:exon:25226;Parent=Msa0705990-mRNA-1
chr4_4 exon 78849585 78849910 78849585 ID=Msa0705990-mRNA-1:exon:25227;Parent=Msa0705990-mRNA-1
chr4_4 exon 78850013 78850105 78850013 ID=Msa0705990-mRNA-1:exon:25228;Parent=Msa0705990-mRNA-1
chr4_4 exon 78850216 78850306 78850216 ID=Msa0705990-mRNA-1:exon:25229;Parent=Msa0705990-mRNA-1
chr4_4 exon 78851537 78851630 78851537 ID=Msa0705990-mRNA-1:exon:25230;Parent=Msa0705990-mRNA-1
chr4_4 exon 78851990 78852087 78851990 ID=Msa0705990-mRNA-1:exon:25231;Parent=Msa0705990-mRNA-1
chr4_4 exon 78852306 78852375 78852306 ID=Msa0705990-mRNA-1:exon:25232;Parent=Msa0705990-mRNA-1
chr4_4 exon 78852725 78852828 78852725 ID=Msa0705990-mRNA-1:exon:25233;Parent=Msa0705990-mRNA-1
chr4_4 exon 78853243 78853359 78853243 ID=Msa0705990-mRNA-1:exon:25234;Parent=Msa0705990-mRNA-1
chr4_4 exon 78853839 78853915 78853839 ID=Msa0705990-mRNA-1:exon:25235;Parent=Msa0705990-mRNA-1
chr4_4 exon 78854043 78854087 78854043 ID=Msa0705990-mRNA-1:exon:25236;Parent=Msa0705990-mRNA-1
chr4_4 exon 78854197 78855161 78854197 ID=Msa0705990-mRNA-1:exon:25237;Parent=Msa0705990-mRNA-1
chr4_4 exon 78855187 78855256 78855187 ID=Msa0705990-mRNA-1:exon:25238;Parent=Msa0705990-mRNA-1
chr4_4 five_prime_UTR 78847359 78847747 78847359 ID=Msa0705990-mRNA-1:five_prime_utr;Parent=Msa0705990-mRNA-1
chr4_4 CDS 78847748 78848047 78847748 ID=Msa0705990-mRNA-1:cds;Parent=Msa0705990-mRNA-1
chr4_4 CDS 78849585 78849910 78849585 ID=Msa0705990-mRNA-1:cds;Parent=Msa0705990-mRNA-1
chr4_4 CDS 78850013 78850105 78850013 ID=Msa0705990-mRNA-1:cds;Parent=Msa0705990-mRNA-1
chr4_4 CDS 78850216 78850306 78850216 ID=Msa0705990-mRNA-1:cds;Parent=Msa0705990-mRNA-1
chr4_4 CDS 78851537 78851630 78851537 ID=Msa0705990-mRNA-1:cds;Parent=Msa0705990-mRNA-1
chr4_4 CDS 78851990 78852087 78851990 ID=Msa0705990-mRNA-1:cds;Parent=Msa0705990-mRNA-1
chr4_4 CDS 78852306 78852375 78852306 ID=Msa0705990-mRNA-1:cds;Parent=Msa0705990-mRNA-1
chr4_4 CDS 78852725 78852828 78852725 ID=Msa0705990-mRNA-1:cds;Parent=Msa0705990-mRNA-1
chr4_4 CDS 78853243 78853359 78853243 ID=Msa0705990-mRNA-1:cds;Parent=Msa0705990-mRNA-1
chr4_4 CDS 78853839 78853915 78853839 ID=Msa0705990-mRNA-1:cds;Parent=Msa0705990-mRNA-1
chr4_4 CDS 78854043 78854087 78854043 ID=Msa0705990-mRNA-1:cds;Parent=Msa0705990-mRNA-1
chr4_4 CDS 78854197 78854704 78854197 ID=Msa0705990-mRNA-1:cds;Parent=Msa0705990-mRNA-1
chr4_4 three_prime_UTR 78854705 78855161 78854705 ID=Msa0705990-mRNA-1:three_prime_utr;Parent=Msa0705990-mRNA-1
chr4_4 three_prime_UTR 78855187 78855256 78855187 ID=Msa0705990-mRNA-1:three_prime_utr;Parent=Msa0705990-mRNA-1
Gene Sequence

>Msa0705990

ATGGGTGGTCTTTGTTCCAAGTCTACAAAAGGTAATAAGGCTTTAACCAAGAAGGAAGAACACTATGGTAATCATAAATCTGGTGTTGGTAATAAGAAGAATAATCATAAGCATGTTAGTGATTTGACAAGTGCAAAGGAGGGTGTGGATAGTAAGAAAAAGGAAGAAGAAGAAGAAGAAGCTGTTGGTGTTGCTGCAGAAACTAGGAATGATGATTTCTATGATGGGATTCCACGCTATGCTGATTCTTTTTCACATAAGTCTAGGTCAGTAAGATCAAGACAAGCTGCTGTTGCTAAGGTCTCCGAGGTGAGTTCACGCCTAGGCAGAGCTGGCACTATTGGATTCGGGAAAGCAGTTGACGTTCTAGACACACTTGGGAGTAGCATGACAAATTTAAATTCTGGCGGTGGCTTTGCATATGGAGCTGTAACAAAGGGGAACGAAGTTGGTATTTTAGCGTTTGAGGTTGCAAACACTATTGTCAAGGGCTTTAGTCTCATGGAATCTCTTTCAACAAAAAATATTAAACATTTGAAAGAAGAGGTGCTTAAGTTAGAGGCTGTTCAAGATTTAGTATCAAAGGATATGGACGAACTTCTAAGGATTGTTGCTGCAGACAAGAGGGATGAATTGAAAGTATTTTCTGATGAGGTGATTCGTTTTGGAAATCGGTCAAAGGATCCTCAGTGGCACAACTTGGATCGATACTTTGAAAAAATTAGCAGAGAACTTAATTCTCAAAGACAAACAAAAGAAGAGGCAGAGTTATTAATGCAGCAATTGATGAGTTTAGTTCAACATACGGCGGAATTATACCATGAGTTACATGCTTTGGATAGATTCGCACAAGATTATCAGCATAAGCGTGATGAGGAGGACAATTCAAGTGCAGCTCAAAGCGGCGATAGCCTGTCAATCTTGAAGGCAGAACTTAGAAGCCAAAAGAAGCAGGTTAAGCACTTGAAGAAGAAGTCACTCTGGTCCAGAAGTTTGGAGGAGGTTATGGAGAAACTTGTAGACATAGTCCACTTTTTGCATTTGGAGATAAATAAAGCCTTTGGCAGTGCAGATGGCCGTAAACCATTTATTCGAACCATCAGCAATCGCCAAAGATTGGGTCCTGCAGGGCTCTCTTTGCATTATGCAAATATAGTGCTCCAAATGGATACTCTAGTTGCCAGATCCAGTTCTATGCCTGCAAATACAAGGGATACACTATATCAGAGCTTGCCTCCTAATATAAAATTAACTTTGCGCTCCAAATTACCTACATTTCATGTTGCAGAAGAGCTCACTGTAGCAGATATTAAACAGGAGATGGAAAAAACATTGCATTGGTTGGTTCCAATTGCTACAAACACAGCCAAAGCGCATCACGGTTTTGGTTGGGTTGGAGAGTGGGCAAGCACTGGATCTGATCTAAATAAGAAAACTATGAAGACCGAAGTAATGCGGATTGAAACATTTCACCATGCAGATAAAGAAAAGGTAGAAAACTATATTCTTGAACTTCTCTTGTGGCTTCACCGCTTGGCGGTCAAGAGTAAGGCCGGAGGTGATGTTGGAGAAGTCAAGTCTGTCATAAAGTCTCATGTTGGCACTGTCCTGCAAAAGACAAATAAACAATCTACAAACACAGTATCACCATTGCTAACAACCGATGAGCAGATCATGCTGAAGGATGTAAGTAACAAAATTCCTGTTAGAGGGATCATTAAAAGTAAAAGCTTGGACTTTGACAGTCTGAAAATGGAGTTGACAGATAACAGCAAACTTATCAAAAGTAGCAGTTACTCAACGACAAGTAGAAGCAAGGAATTATCTTTTAACAGAATTCACACTAAGGTTCCTGTGATTGATTTTTGTATTGACAAAAAGAGAGCATTGGATGTGATTGACAGAGTAAATGTGACCAGATAA
Protein sequence

>Msa0705990

MGGLCSKSTKGNKALTKKEEHYGNHKSGVGNKKNNHKHVSDLTSAKEGVDSKKKEEEEEEAVGVAAETRNDDFYDGIPRYADSFSHKSRSVRSRQAAVAKVSEVSSRLGRAGTIGFGKAVDVLDTLGSSMTNLNSGGGFAYGAVTKGNEVGILAFEVANTIVKGFSLMESLSTKNIKHLKEEVLKLEAVQDLVSKDMDELLRIVAADKRDELKVFSDEVIRFGNRSKDPQWHNLDRYFEKISRELNSQRQTKEEAELLMQQLMSLVQHTAELYHELHALDRFAQDYQHKRDEEDNSSAAQSGDSLSILKAELRSQKKQVKHLKKKSLWSRSLEEVMEKLVDIVHFLHLEINKAFGSADGRKPFIRTISNRQRLGPAGLSLHYANIVLQMDTLVARSSSMPANTRDTLYQSLPPNIKLTLRSKLPTFHVAEELTVADIKQEMEKTLHWLVPIATNTAKAHHGFGWVGEWASTGSDLNKKTMKTEVMRIETFHHADKEKVENYILELLLWLHRLAVKSKAGGDVGEVKSVIKSHVGTVLQKTNKQSTNTVSPLLTTDEQIMLKDVSNKIPVRGIIKSKSLDFDSLKMELTDNSKLIKSSSYSTTSRSKELSFNRIHTKVPVIDFCIDKKRALDVIDRVNVTR*