AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1221330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221330 MtrunA17_Chr4g0072691 88.430 605 7 3 31 572 2 606 0.0 1068
Msa1221330 MtrunA17_Chr2g0281171 58.675 634 172 11 13 572 16 633 0.0 706
Msa1221330 MtrunA17_Chr4g0048161 58.320 631 175 10 13 572 15 628 0.0 703
Msa1221330 MtrunA17_Chr2g0304831 50.937 587 222 13 28 571 30 593 0.0 550
Msa1221330 MtrunA17_Chr6g0484131 42.416 389 170 9 13 352 4 387 8.20e-96 301
Msa1221330 MtrunA17_Chr6g0484121 42.674 389 169 9 13 352 4 387 1.25e-93 295
Msa1221330 MtrunA17_Chr6g0484111 40.385 416 191 10 13 376 4 414 7.39e-93 293
Msa1221330 MtrunA17_Chr8g0391221 43.617 376 163 9 21 351 13 384 2.30e-91 289
Msa1221330 MtrunA17_Chr8g0391211 42.526 388 169 10 12 351 74 455 2.15e-89 286
Msa1221330 MtrunA17_Chr4g0059411 35.881 471 238 10 15 426 2 467 6.95e-77 253
Msa1221330 MtrunA17_Chr7g0271691 34.018 341 174 11 42 341 31 361 3.03e-46 170
Msa1221330 MtrunA17_Chr7g0271671 30.000 330 189 11 52 343 60 385 2.63e-31 128
Msa1221330 MtrunA17_Chr7g0271681 30.556 288 161 9 91 341 8 293 9.08e-29 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221330 AT5G57580.1 62.141 626 166 9 12 567 12 636 0.0 750
Msa1221330 AT2G18750.3 60.738 596 180 8 25 572 30 619 0.0 703
Msa1221330 AT2G18750.2 60.738 596 180 8 25 572 30 619 0.0 703
Msa1221330 AT2G18750.1 60.738 596 180 8 25 572 30 619 0.0 703
Msa1221330 AT4G25800.1 60.167 600 175 12 21 570 9 594 0.0 681
Msa1221330 AT4G25800.2 60.167 600 175 12 21 570 9 594 0.0 681
Msa1221330 AT2G24300.3 48.819 635 219 16 9 571 3 603 0.0 531
Msa1221330 AT2G24300.2 48.815 633 218 16 11 571 1 599 0.0 530
Msa1221330 AT4G31000.1 46.141 596 224 13 22 571 18 562 7.53e-166 484
Msa1221330 AT2G24300.1 47.496 579 203 14 60 571 8 552 1.04e-160 470
Msa1221330 AT4G31000.2 43.664 584 235 13 22 571 18 541 6.82e-149 439
Msa1221330 AT5G62570.1 40.160 376 181 9 12 351 10 377 1.62e-82 267
Msa1221330 AT5G62570.4 40.720 361 170 9 12 336 10 362 4.61e-81 259
Msa1221330 AT1G73805.1 41.546 414 190 15 12 382 3 407 5.65e-81 261
Msa1221330 AT5G62570.2 40.395 354 171 8 34 351 13 362 1.39e-79 259
Msa1221330 AT5G26920.3 35.556 360 187 10 35 360 28 376 7.88e-59 202
Msa1221330 AT5G26920.1 33.659 410 226 10 35 409 28 426 3.82e-58 204
Msa1221330 AT5G62570.3 40.418 287 128 8 12 263 10 288 4.92e-58 196
Msa1221330 AT5G26920.2 33.171 410 220 11 35 409 28 418 3.31e-54 193

Find 206 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGCTTCCTTAGCAGTTTC+TGG 0.190436 8_1:-84870908 None:intergenic
CAACATTGATAAAACTCTTT+AGG 0.224335 8_1:-84877449 None:intergenic
GAAACTTGCGGCTTCAATTT+AGG 0.227554 8_1:-84874037 Msa1221330:CDS
GACCAATCATCAAAAGGATT+TGG 0.249013 8_1:+84871673 None:intergenic
AAGAGCGACAAAATCGATTA+TGG 0.252868 8_1:+84877230 None:intergenic
CTGTCTAACGACCATTTATT+AGG 0.257471 8_1:-84871817 Msa1221330:CDS
CCAACATTTCTTGTATCTTC+TGG 0.260798 8_1:+84873150 None:intergenic
CGTAGATTCATTGGTGAAAA+AGG 0.263119 8_1:-84872775 Msa1221330:CDS
TCATGCCAAGCCTGAATTTA+CGG 0.267843 8_1:+84873685 None:intergenic
ACCAATCATCAAAAGGATTT+GGG 0.270429 8_1:+84871674 None:intergenic
ATTCCAGGTCTTCCCCTAAA+AGG 0.273733 8_1:-84874079 Msa1221330:intron
GGCTCCAATTCATGTTGTTC+TGG 0.279294 8_1:-84873961 Msa1221330:CDS
ACCTACCGACGGAGCAAGTA+TGG 0.282294 8_1:-84876696 Msa1221330:CDS
TATCACCTTTCCATTTGTTC+TGG 0.286857 8_1:-84871083 Msa1221330:three_prime_UTR
CATGGTACTATCAACATTCT+TGG 0.300598 8_1:-84871225 Msa1221330:three_prime_UTR
ATGAAGGTTGCATCTGGTTT+TGG 0.301321 8_1:-84873666 Msa1221330:CDS
ATGATCATTTCTAGAGCTTT+GGG 0.311058 8_1:+84871780 None:intergenic
AGGAGGGAGTTGGAACATTA+GGG 0.319027 8_1:-84873746 Msa1221330:CDS
TATGATCATTTCTAGAGCTT+TGG 0.327299 8_1:+84871779 None:intergenic
GATAGAGGAGTTAGATGAAT+AGG 0.330153 8_1:-84871350 Msa1221330:exon
GACCTTCCACTAAGTCTTGC+AGG 0.335446 8_1:+84875062 None:intergenic
AAGGAGGGAGTTGGAACATT+AGG 0.344356 8_1:-84873747 Msa1221330:CDS
AGGAAAAGTGGAAGGCGAGC+AGG 0.346252 8_1:-84873985 Msa1221330:CDS
GTACCATGGACTGCACAATT+TGG 0.346447 8_1:+84871240 None:intergenic
CTTTCTTCGACTTGTGGTTA+AGG 0.348617 8_1:-84873361 Msa1221330:CDS
AGAATTGCTCTCCTGTTATA+AGG 0.349484 8_1:+84873094 None:intergenic
GTTTCTCTTTGTATTATTTG+TGG 0.350430 8_1:+84877289 None:intergenic
CCTCCTCAATCATCAACTTC+AGG 0.351569 8_1:-84871733 Msa1221330:CDS
AGTTAGATGAATAGGTTGTT+TGG 0.375485 8_1:-84871342 Msa1221330:exon
CTTGGCATGAAGGTTGCATC+TGG 0.376451 8_1:-84873672 Msa1221330:CDS
TTGATGATTGGTCAAACAAC+AGG 0.382766 8_1:-84871663 Msa1221330:CDS
TATCCAAGCCAGGCCTTGAT+TGG 0.383278 8_1:-84871880 Msa1221330:CDS
AAAGATAACTTAGCAGTGTT+TGG 0.386742 8_1:+84877178 None:intergenic
TCAACCAGAACAACATGAAT+TGG 0.387226 8_1:+84873957 None:intergenic
AAAAGGGCCCTTGAGGGTGG+TGG 0.392097 8_1:-84876671 Msa1221330:CDS
GGTGAGCATTGCCTAATAAA+TGG 0.392285 8_1:+84871806 None:intergenic
TGATAGAGGAGAGTATTAAC+AGG 0.393310 8_1:+84871101 None:intergenic
CAGACAATTCAAGCTGGATA+AGG 0.396389 8_1:-84873710 Msa1221330:CDS
GAGCTGCGTGGCCTTATAAC+AGG 0.396907 8_1:-84873105 Msa1221330:CDS
GAAAGAGACCTTTGTTGAAC+GGG 0.397608 8_1:-84873788 Msa1221330:CDS
ATAACCATCCTCAGTATTCA+TGG 0.401476 8_1:+84871522 None:intergenic
GTATGGAGATTGGAGAAAAT+AGG 0.411051 8_1:-84873441 Msa1221330:CDS
CATGGCTTTCAAATTCCTCT+TGG 0.412910 8_1:+84873829 None:intergenic
ACAATGAAGATGATGAAGAT+TGG 0.416706 8_1:-84873854 Msa1221330:CDS
TTGTTTGGACAAATGATAGT+AGG 0.416932 8_1:-84871327 Msa1221330:three_prime_UTR
TCAACAAAGGTCTCTTTCCT+TGG 0.417676 8_1:+84873793 None:intergenic
AGAGCAGGCCTCTTTCGTTC+AGG 0.419912 8_1:+84876635 None:intergenic
TTCAATAAGCAAGAAATTTG+AGG 0.423231 8_1:+84877015 None:intergenic
TCGTCCTGGCAAAGCTGTTG+TGG 0.427546 8_1:-84871446 Msa1221330:CDS
TTAGGTCCTGCAAGACTTAG+TGG 0.427991 8_1:-84875068 Msa1221330:CDS
CTTACAACTCTACGAAGAAT+AGG 0.430379 8_1:+84875730 None:intergenic
GAGCGTGCTTTGGCGAAGTT+AGG 0.431759 8_1:-84875086 Msa1221330:CDS
ACGGAGCAAGTATGGGGAAA+AGG 0.432238 8_1:-84876688 Msa1221330:CDS
GGAAAAGTGGAAGGCGAGCA+GGG 0.434212 8_1:-84873984 Msa1221330:CDS
AATGGATTATTTGCCTGAGT+TGG 0.436962 8_1:+84877255 None:intergenic
ATCAAAATGACTCCGAGAGC+TGG 0.437216 8_1:+84871852 None:intergenic
ACTGCTAAGTTATCTTTCTC+AGG 0.443471 8_1:-84877172 Msa1221330:five_prime_UTR
GGATAAGGAGCCGTAAATTC+AGG 0.444391 8_1:-84873695 Msa1221330:CDS
TTTCCAATCAAGGCCTGGCT+TGG 0.454955 8_1:+84871877 None:intergenic
AGAGCGACAAAATCGATTAT+GGG 0.457844 8_1:+84877231 None:intergenic
GTATTATTTGTGGTCTACTC+TGG 0.457881 8_1:+84877299 None:intergenic
GAAAGTGACGGGGAGTTTAA+CGG 0.458973 8_1:+84877139 None:intergenic
ACAAAATCGATTATGGGTAA+TGG 0.459025 8_1:+84877237 None:intergenic
CTTGGCGTTCTTTCACCACA+TGG 0.459760 8_1:+84873811 None:intergenic
TTGTTTGACCAATCATCAAA+AGG 0.464007 8_1:+84871667 None:intergenic
TGGAATTTCCAATCAAGGCC+TGG 0.466762 8_1:+84871872 None:intergenic
GGGAAAAGGGCCCTTGAGGG+TGG 0.466874 8_1:-84876674 Msa1221330:CDS
CTGCATTGGGTGATGATGTA+TGG 0.466882 8_1:-84873458 Msa1221330:CDS
GATGACCTCCCATGCTGAAA+AGG 0.468471 8_1:+84871548 None:intergenic
TTGGAGAAAATAGGTAAGGA+TGG 0.469150 8_1:-84873432 Msa1221330:CDS
CGTCCTGGCAAAGCTGTTGT+GGG 0.470319 8_1:-84871445 Msa1221330:CDS
AAGCATTATCCTCCTGCATT+GGG 0.471644 8_1:-84873471 Msa1221330:CDS
CGGAGCAAGTATGGGGAAAA+GGG 0.472146 8_1:-84876687 Msa1221330:CDS
GAAAAGTGGAAGGCGAGCAG+GGG 0.473276 8_1:-84873983 Msa1221330:CDS
TGCTAAGGAAGCCGATGTAC+TGG 0.478188 8_1:+84870916 None:intergenic
ATGGGGAAAAGGGCCCTTGA+GGG 0.479275 8_1:-84876677 Msa1221330:CDS
TGAGAAGCGGGCTCAGATAG+AGG 0.479668 8_1:-84871365 Msa1221330:CDS
AGCCGCAAGTTTCTACCATC+AGG 0.481921 8_1:+84874047 None:intergenic
TGAAGAAGTGGAGCGTGCTT+TGG 0.482538 8_1:-84875096 Msa1221330:CDS
AACAAATGGAAAGGTGATAG+AGG 0.484106 8_1:+84871087 None:intergenic
CCAGGTGTACGTAGATTCAT+TGG 0.488667 8_1:-84872784 Msa1221330:intron
CATGGACTGCACAATTTGGT+TGG 0.490718 8_1:+84871244 None:intergenic
CATTTCTAGAGCTTTGGGAT+TGG 0.490729 8_1:+84871785 None:intergenic
TCTTCCCCTAAAAGGATTGA+AGG 0.490929 8_1:-84874071 Msa1221330:CDS
GAAGCATTATCCTCCTGCAT+TGG 0.492254 8_1:-84873472 Msa1221330:CDS
ACAGAAAGCGGGAAAGTGAC+GGG 0.497033 8_1:+84877128 None:intergenic
ATAGGAGATGGCATGAATGA+TGG 0.499594 8_1:+84871493 None:intergenic
TGGTCGTTAGACAGATATAA+CGG 0.502191 8_1:+84871826 None:intergenic
AGCACAGTAGGGTTGGCTCT+TGG 0.502333 8_1:-84871757 Msa1221330:CDS
TCTCAAATCTGACAGGTGTT+CGG 0.504630 8_1:+84871038 None:intergenic
AAAGATAGCAGCTGAGAAGC+GGG 0.505005 8_1:-84871377 Msa1221330:CDS
ATTTGGGGCAGGTGGTTGCA+TGG 0.506195 8_1:+84871690 None:intergenic
GAGCGATCCTCATCGAAGTT+CGG 0.507680 8_1:+84871469 None:intergenic
TGAAGACTTTCTTCGACTTG+TGG 0.512373 8_1:-84873367 Msa1221330:CDS
CAAAGACATGTGTTCTAAGC+GGG 0.515939 8_1:-84873191 Msa1221330:CDS
GATGAGGATCGCTCTCGTCC+TGG 0.516093 8_1:-84871460 Msa1221330:CDS
GGGTGATGATGTATGGAGAT+TGG 0.516199 8_1:-84873451 Msa1221330:CDS
CATCCCACAACAGCTTTGCC+AGG 0.518586 8_1:+84871442 None:intergenic
TAAATTCAGGCTTGGCATGA+AGG 0.518982 8_1:-84873682 Msa1221330:CDS
CCAGAAGATACAAGAAATGT+TGG 0.524917 8_1:-84873150 Msa1221330:CDS
GAATAGAGGAAGAGCCAGTC+GGG 0.527053 8_1:+84874013 None:intergenic
CCCATACTTGCTCCGTCGGT+AGG 0.528831 8_1:+84876695 None:intergenic
ATGATCAGCCTGAACGAAAG+AGG 0.530138 8_1:-84876643 Msa1221330:CDS
TCTATTCACAGGAGGAAAAG+TGG 0.530836 8_1:-84873997 Msa1221330:CDS
AGAAATGATCATAGCACAGT+AGG 0.531016 8_1:-84871769 Msa1221330:CDS
CCTACCGACGGAGCAAGTAT+GGG 0.532278 8_1:-84876695 Msa1221330:CDS
AGAGCTGGAATTTCCAATCA+AGG 0.532492 8_1:+84871867 None:intergenic
TAGGAGATGGCATGAATGAT+GGG 0.538746 8_1:+84871494 None:intergenic
TGTTACCACACTTCCACTGT+TGG 0.541743 8_1:+84873932 None:intergenic
TGATTGGAAATTCCAGCTCT+CGG 0.541752 8_1:-84871864 Msa1221330:CDS
TGATCATAGCACAGTAGGGT+TGG 0.542419 8_1:-84871764 Msa1221330:CDS
GAGATTGGAGAAAATAGGTA+AGG 0.543540 8_1:-84873436 Msa1221330:CDS
GGCATACGACAATTGGGAGC+AGG 0.543575 8_1:-84872754 Msa1221330:CDS
GGTCGTTAGACAGATATAAC+GGG 0.547369 8_1:+84871827 None:intergenic
GTGACACTCAAGGAGGGAGT+TGG 0.551007 8_1:-84873756 Msa1221330:CDS
GAAAGAGGCCTGCTCTTGCT+AGG 0.551299 8_1:-84876628 Msa1221330:intron
GCGGTATGTCAAACAAGATG+TGG 0.556486 8_1:-84873233 Msa1221330:CDS
TCGAAGTTCGGCATAGGAGA+TGG 0.557623 8_1:+84871481 None:intergenic
GCTTCAATTTAGGTCCCGAC+TGG 0.559550 8_1:-84874027 Msa1221330:CDS
TCATCAAAAGGATTTGGGGC+AGG 0.561538 8_1:+84871679 None:intergenic
CTGGCAAAGCTGTTGTGGGA+TGG 0.561875 8_1:-84871441 Msa1221330:CDS
CAACCAAATTGTGCAGTCCA+TGG 0.562036 8_1:-84871243 Msa1221330:three_prime_UTR
AGGAGCCGTAAATTCAGGCT+TGG 0.562655 8_1:-84873690 Msa1221330:CDS
TGCAATTCCCCGTTCAACAA+AGG 0.563578 8_1:+84873780 None:intergenic
GGAAAGAGACCTTTGTTGAA+CGG 0.564757 8_1:-84873789 Msa1221330:CDS
CATCATCTCCACCACCCTCA+AGG 0.569454 8_1:+84876663 None:intergenic
TGCTGTAAAATCAGATACAC+AGG 0.570797 8_1:+84871196 None:intergenic
CTGGCTCTTCCTCTATTCAC+AGG 0.571268 8_1:-84874008 Msa1221330:CDS
CATACATCATCACCCAATGC+AGG 0.571328 8_1:+84873459 None:intergenic
TTCTCTTAGCGATAATCAGA+AGG 0.571541 8_1:-84873061 Msa1221330:intron
AGTTATATCTCAAATCTGAC+AGG 0.574283 8_1:+84871031 None:intergenic
GAAAGATAGCAGCTGAGAAG+CGG 0.574867 8_1:-84871378 Msa1221330:CDS
GGTGACGAGGTATCCAAGCC+AGG 0.574995 8_1:-84871890 Msa1221330:CDS
AATTAGTACCTAGCAAGAGC+AGG 0.575775 8_1:+84876620 None:intergenic
AACAGAAAGCGGGAAAGTGA+CGG 0.576269 8_1:+84877127 None:intergenic
TGTAATTGTTGAAGCTCTCA+AGG 0.576695 8_1:-84875788 Msa1221330:CDS
TTTCCCCATACTTGCTCCGT+CGG 0.576968 8_1:+84876691 None:intergenic
GAAACAGGTGAGTGAAGAAG+TGG 0.579618 8_1:-84875108 Msa1221330:intron
TGTTTGACATACCGCTCCCA+AGG 0.580423 8_1:+84873241 None:intergenic
CCTTCCATGAATACTGAGGA+TGG 0.581352 8_1:-84871526 Msa1221330:CDS
AGATCAAGGCAGCAATGAGG+TGG 0.581898 8_1:-84871414 Msa1221330:CDS
TGGAGAAAATAGGTAAGGAT+GGG 0.582851 8_1:-84873431 Msa1221330:CDS
AAAAGTGGAAGGCGAGCAGG+GGG 0.583445 8_1:-84873982 Msa1221330:CDS
ATACTTGCTCCGTCGGTAGG+TGG 0.585208 8_1:+84876698 None:intergenic
TCAAAAGGATTTGGGGCAGG+TGG 0.585247 8_1:+84871682 None:intergenic
GATCAAGGCAGCAATGAGGT+GGG 0.585308 8_1:-84871413 Msa1221330:CDS
TTAGAACACATGTCTTTGCA+TGG 0.587365 8_1:+84873196 None:intergenic
GTAAAAGAAACGAAGTGTAA+CGG 0.588321 8_1:+84877049 None:intergenic
GAAATGATCATAGCACAGTA+GGG 0.588957 8_1:-84871768 Msa1221330:CDS
GTGGAGTCAATTGATTATGA+TGG 0.589511 8_1:-84872654 Msa1221330:CDS
AAAAGGATTGAAGGTCCTGA+TGG 0.591187 8_1:-84874062 Msa1221330:CDS
TATTTACAGACAATTCAAGC+TGG 0.591421 8_1:-84873716 Msa1221330:CDS
TCCTCATCGAAGTTCGGCAT+AGG 0.592002 8_1:+84871475 None:intergenic
ATCTGAAAATGAACTTCATG+TGG 0.593527 8_1:-84872673 Msa1221330:CDS
TGAATAGAGGAAGAGCCAGT+CGG 0.595918 8_1:+84874012 None:intergenic
TTGGTCAAACAACAGGGACA+AGG 0.596217 8_1:-84871656 Msa1221330:CDS
TATGGGGAAAAGGGCCCTTG+AGG 0.596359 8_1:-84876678 Msa1221330:CDS
TGTGGGATGGCTGAAGATCA+AGG 0.598934 8_1:-84871428 Msa1221330:CDS
TGTGGATTGCACCAGTACAT+CGG 0.602479 8_1:-84870927 Msa1221330:three_prime_UTR
ATCATCTCCACCACCCTCAA+GGG 0.602604 8_1:+84876664 None:intergenic
GCAAAGACATGTGTTCTAAG+CGG 0.603417 8_1:-84873192 Msa1221330:CDS
CCAATCATCAAAAGGATTTG+GGG 0.604126 8_1:+84871675 None:intergenic
ACTCAATGACTTTCCAACTC+AGG 0.604793 8_1:-84877268 Msa1221330:five_prime_UTR
GTACGATGGCAAATCACTTG+TGG 0.605703 8_1:-84872724 Msa1221330:CDS
CCATCCTCAGTATTCATGGA+AGG 0.606998 8_1:+84871526 None:intergenic
CGGTATGTCAAACAAGATGT+GGG 0.611205 8_1:-84873232 Msa1221330:CDS
TCATTAACCAGAAACTGCTA+AGG 0.614827 8_1:+84870901 None:intergenic
ATCAAGGCAGCAATGAGGTG+GGG 0.619987 8_1:-84871412 Msa1221330:CDS
CGAAGTGTAACGGAGTGAGA+CGG 0.622734 8_1:+84877059 None:intergenic
TTAAGGATCAACAGAAATTG+CGG 0.629713 8_1:-84873344 Msa1221330:CDS
TTCACAGGAGGAAAAGTGGA+AGG 0.630540 8_1:-84873993 Msa1221330:CDS
AAACCTGAAGTTGATGATTG+AGG 0.630756 8_1:+84871730 None:intergenic
TAAAACCAGAACAAATGGAA+AGG 0.632256 8_1:+84871078 None:intergenic
GAGTCAATTGATTATGATGG+CGG 0.635927 8_1:-84872651 Msa1221330:intron
TGATGATTGGTCAAACAACA+GGG 0.639296 8_1:-84871662 Msa1221330:CDS
CTACCGACGGAGCAAGTATG+GGG 0.641969 8_1:-84876694 Msa1221330:CDS
GGAGGGAGTTGGAACATTAG+GGG 0.645782 8_1:-84873745 Msa1221330:CDS
GTCCTGCAAGACTTAGTGGA+AGG 0.645964 8_1:-84875064 Msa1221330:intron
TTGCAAGTGACACTCAAGGA+GGG 0.648338 8_1:-84873762 Msa1221330:CDS
TTAATGTAGATCCTTGGGAG+CGG 0.650892 8_1:-84873252 Msa1221330:intron
TGGTCAAACAACAGGGACAA+GGG 0.651328 8_1:-84871655 Msa1221330:CDS
AAGTCGAAGAAAGTCTTCAA+CGG 0.655298 8_1:+84873371 None:intergenic
CAAGAATGTTGATAGTACCA+TGG 0.657579 8_1:+84871226 None:intergenic
ACATCATCACCCAATGCAGG+AGG 0.659507 8_1:+84873462 None:intergenic
GGAATTGCAAGTGACACTCA+AGG 0.660054 8_1:-84873766 Msa1221330:CDS
TGATGAAGATTGGAGCCAAG+AGG 0.663673 8_1:-84873844 Msa1221330:CDS
GTCCTGATGGTAGAAACTTG+CGG 0.666102 8_1:-84874049 Msa1221330:CDS
CCTGAAGTTGATGATTGAGG+AGG 0.672442 8_1:+84871733 None:intergenic
TCCTATGCCGAACTTCGATG+AGG 0.673170 8_1:-84871476 Msa1221330:CDS
CAGAAAGCGGGAAAGTGACG+GGG 0.673992 8_1:+84877129 None:intergenic
GTATCTCATTACTTCTAACG+CGG 0.674561 8_1:+84871602 None:intergenic
GCATGGAAGAGCTAGCAGCA+TGG 0.678116 8_1:+84871707 None:intergenic
AAAGAGACCTTTGTTGAACG+GGG 0.679526 8_1:-84873787 Msa1221330:CDS
GGCCACGCAGCTCATAGACG+TGG 0.680553 8_1:+84873115 None:intergenic
GCTCTTCCTCTATTCACAGG+AGG 0.683262 8_1:-84874005 Msa1221330:CDS
TTAACAATAGCATGGTGACG+AGG 0.687450 8_1:-84871903 Msa1221330:CDS
ATGCAGAGACCACCTACCGA+CGG 0.690427 8_1:-84876707 Msa1221330:CDS
GTTCTGGTTGATGCCAACAG+TGG 0.693306 8_1:-84873945 Msa1221330:CDS
TCATCCTTCCATGAATACTG+AGG 0.700726 8_1:-84871530 Msa1221330:CDS
TGAAGATCAAGGCAGCAATG+AGG 0.700972 8_1:-84871417 Msa1221330:CDS
AATTGTTGAAGCTCTCAAGG+TGG 0.705133 8_1:-84875785 Msa1221330:CDS
ATTGCAAGTGACACTCAAGG+AGG 0.711537 8_1:-84873763 Msa1221330:CDS
GAGCAGGTTGTAGAGTACGA+TGG 0.728618 8_1:-84872738 Msa1221330:CDS
AACCACGTCTATGAGCTGCG+TGG 0.733614 8_1:-84873117 Msa1221330:CDS
CATGTGGTGAAAGAACGCCA+AGG 0.747220 8_1:-84873810 Msa1221330:CDS
AGAGGAATTTGAAAGCCATG+TGG 0.749246 8_1:-84873826 Msa1221330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAAAATAAAAAAA+AGG - chr8_1:84871019-84871038 Msa1221330:three_prime_UTR 0.0%
!! TATTTAATTATTATATTATA+TGG - chr8_1:84871557-84871576 Msa1221330:CDS 0.0%
!!! ATTATTATATTATATGGTTT+TGG - chr8_1:84871563-84871582 Msa1221330:CDS 10.0%
!! AATGAAAATTCAAATTAAAA+AGG + chr8_1:84872476-84872495 None:intergenic 10.0%
!!! TTACATTTTAAAAATTTCAT+TGG + chr8_1:84874011-84874030 None:intergenic 10.0%
!! TTCATATCAATTATATTAAT+TGG + chr8_1:84875378-84875397 None:intergenic 10.0%
!! AAAATAAAAAATGATACATT+AGG + chr8_1:84876108-84876127 None:intergenic 10.0%
!!! ATTTTTTTTAAGATTAGAGT+AGG - chr8_1:84871516-84871535 Msa1221330:CDS 15.0%
!! ATTGAAAATAAAATACTAAC+TGG + chr8_1:84871822-84871841 None:intergenic 15.0%
!!! ATTTGAATTTTCATTCTTAA+TGG - chr8_1:84872481-84872500 Msa1221330:intron 15.0%
!!! TTTTTGATTCAGTAATATTT+TGG - chr8_1:84872681-84872700 Msa1221330:CDS 15.0%
!!! AACTACAAATATTTTGAAAT+TGG + chr8_1:84873343-84873362 None:intergenic 15.0%
!! ATTAAATTTAACTATGATGA+TGG + chr8_1:84874202-84874221 None:intergenic 15.0%
!! TAAAGAAAAATAACAGAAAG+CGG + chr8_1:84871237-84871256 None:intergenic 20.0%
!! TTTGAATTACTGTATCTATT+AGG - chr8_1:84871455-84871474 Msa1221330:CDS 20.0%
!! TTGAATTACTGTATCTATTA+GGG - chr8_1:84871456-84871475 Msa1221330:CDS 20.0%
!!! TTTGTGTAATTTTGTTTTGT+AGG - chr8_1:84871597-84871616 Msa1221330:CDS 20.0%
!!! TTGTGTAATTTTGTTTTGTA+GGG - chr8_1:84871598-84871617 Msa1221330:CDS 20.0%
!! TCAACAAAAAAGATAAAGAA+GGG + chr8_1:84872182-84872201 None:intergenic 20.0%
!! TTCAACAAAAAAGATAAAGA+AGG + chr8_1:84872183-84872202 None:intergenic 20.0%
!!! ATGTGAATTTTTCTTCTTAA+TGG - chr8_1:84872207-84872226 Msa1221330:intron 20.0%
!!! ATTCAGTAATATTTTGGTTT+GGG - chr8_1:84872687-84872706 Msa1221330:CDS 20.0%
!!! ACTTTTTAGTTGGAATAAAA+AGG + chr8_1:84872753-84872772 None:intergenic 20.0%
!! ACAAATACAATAAAAATGCA+TGG + chr8_1:84873397-84873416 None:intergenic 20.0%
!! TCAAAAACACAAAGATATAA+GGG + chr8_1:84873488-84873507 None:intergenic 20.0%
!! TTCAAAAACACAAAGATATA+AGG + chr8_1:84873489-84873508 None:intergenic 20.0%
!!! TATTTCTATTTAATGTCTCA+AGG + chr8_1:84873892-84873911 None:intergenic 20.0%
!!! TATTTTTAACCAGCTAATTT+AGG - chr8_1:84873910-84873929 Msa1221330:intron 20.0%
!!! TTTACGTGTATAATTTTGAT+AGG - chr8_1:84873964-84873983 Msa1221330:CDS 20.0%
!! TTCTAATAAGTTAAAATTCC+AGG - chr8_1:84874256-84874275 Msa1221330:intron 20.0%
!!! ATATTAAAAAATGGTGTTGT+AGG + chr8_1:84874828-84874847 None:intergenic 20.0%
!! ATAAAATATAAGAAAATGGG+TGG + chr8_1:84875077-84875096 None:intergenic 20.0%
!!! TTTATTTTAATGTAGATCCT+TGG - chr8_1:84875092-84875111 Msa1221330:CDS 20.0%
!!! TTATTTTAATGTAGATCCTT+GGG - chr8_1:84875093-84875112 Msa1221330:CDS 20.0%
!!! TCTGATACCTTTAATTTTTT+TGG - chr8_1:84875537-84875556 Msa1221330:intron 20.0%
!!! CTGATACCTTTAATTTTTTT+GGG - chr8_1:84875538-84875557 Msa1221330:intron 20.0%
!! TTCTATTCCATTCAATTATT+TGG + chr8_1:84875826-84875845 None:intergenic 20.0%
!! TTTAAGAAATATGATAGAAC+AGG - chr8_1:84875856-84875875 Msa1221330:intron 20.0%
!! TTAAGAAATATGATAGAACA+GGG - chr8_1:84875857-84875876 Msa1221330:intron 20.0%
!!! AAAAGTATTTGTATAACTAG+GGG + chr8_1:84875976-84875995 None:intergenic 20.0%
!!! GAAAAGTATTTGTATAACTA+GGG + chr8_1:84875977-84875996 None:intergenic 20.0%
!!! AGAAAAGTATTTGTATAACT+AGG + chr8_1:84875978-84875997 None:intergenic 20.0%
! GTTTCTCTTTGTATTATTTG+TGG + chr8_1:84871064-84871083 None:intergenic 25.0%
! AAAGAAAAATAACAGAAAGC+GGG + chr8_1:84871236-84871255 None:intergenic 25.0%
! TTCAATAAGCAAGAAATTTG+AGG + chr8_1:84871338-84871357 None:intergenic 25.0%
!! TTTTCTTGACTCTAATTTCA+AGG - chr8_1:84871359-84871378 Msa1221330:CDS 25.0%
! AAATACTAACTGGACTAAAA+AGG + chr8_1:84871812-84871831 None:intergenic 25.0%
! GTAATACTCGTTATTAATGT+TGG - chr8_1:84872151-84872170 Msa1221330:intron 25.0%
! TTATGCAACGATAATCAAAA+TGG + chr8_1:84872241-84872260 None:intergenic 25.0%
! GATTGTAATAGCTATTTGAA+TGG - chr8_1:84872305-84872324 Msa1221330:intron 25.0%
! AAAACAAATAGCAGAAATCA+GGG + chr8_1:84872659-84872678 None:intergenic 25.0%
!!! GATTCAGTAATATTTTGGTT+TGG - chr8_1:84872686-84872705 Msa1221330:CDS 25.0%
!!! TTCAGTAATATTTTGGTTTG+GGG - chr8_1:84872688-84872707 Msa1221330:CDS 25.0%
! TTGGAAATAAAAGAACCAAA+TGG + chr8_1:84873001-84873020 None:intergenic 25.0%
!! CATTCATTTGATAATTTGTG+TGG - chr8_1:84873035-84873054 Msa1221330:intron 25.0%
! AGAAGAAATAATTCCAATCT+TGG - chr8_1:84873081-84873100 Msa1221330:CDS 25.0%
!! CATTCATTTGATAATTTGTG+TGG - chr8_1:84873035-84873054 Msa1221330:intron 25.0%
! TTGATGCTCAAATAAATGAA+TGG - chr8_1:84873211-84873230 Msa1221330:CDS 25.0%
! GAAATTTATTACCTACAAGT+TGG - chr8_1:84873314-84873333 Msa1221330:intron 25.0%
! GGAGATAACACATAATTTAA+GGG + chr8_1:84873376-84873395 None:intergenic 25.0%
! TGGAGATAACACATAATTTA+AGG + chr8_1:84873377-84873396 None:intergenic 25.0%
! TTGAATCGAAATCTAATAGA+GGG + chr8_1:84873523-84873542 None:intergenic 25.0%
!!! AAGAAAGTATTAAGTTAGAG+AGG - chr8_1:84873579-84873598 Msa1221330:intron 25.0%
! TTTAGTAAAAGAAAGTAGCA+GGG + chr8_1:84873767-84873786 None:intergenic 25.0%
!! TTTTAGTAAAAGAAAGTAGC+AGG + chr8_1:84873768-84873787 None:intergenic 25.0%
!! TAATTTAGGTTCTTGCATAT+AGG - chr8_1:84873924-84873943 Msa1221330:intron 25.0%
! TTTACTGTTAAAGATCATAG+AGG - chr8_1:84874744-84874763 Msa1221330:intron 25.0%
! CTTCTTATACACTGTATAAA+GGG + chr8_1:84874862-84874881 None:intergenic 25.0%
! GACTTTCCCAAAAAAATTAA+AGG + chr8_1:84875547-84875566 None:intergenic 25.0%
! TTAGGAACCAAATAATTGAA+TGG - chr8_1:84875816-84875835 Msa1221330:intron 25.0%
! TAAGAAATATGATAGAACAG+GGG - chr8_1:84875858-84875877 Msa1221330:intron 25.0%
! GGAATACAATGATAAAAAAG+GGG + chr8_1:84875955-84875974 None:intergenic 25.0%
! GGGAATACAATGATAAAAAA+GGG + chr8_1:84875956-84875975 None:intergenic 25.0%
! AAATGATACATTAGGATTCA+AGG + chr8_1:84876100-84876119 None:intergenic 25.0%
! ATGTATATGCAAATTTCTCT+TGG + chr8_1:84876328-84876347 None:intergenic 25.0%
! AGAACATCAGAAAAATCTTA+AGG + chr8_1:84877061-84877080 None:intergenic 25.0%
!! ATGTTATCTCATTTTCATTG+TGG - chr8_1:84877405-84877424 Msa1221330:intron 25.0%
ACAAAATCGATTATGGGTAA+TGG + chr8_1:84871116-84871135 None:intergenic 30.0%
AAAGATAACTTAGCAGTGTT+TGG + chr8_1:84871175-84871194 None:intergenic 30.0%
GTAAAAGAAACGAAGTGTAA+CGG + chr8_1:84871304-84871323 None:intergenic 30.0%
AATGTCCAACTTAACAATCT+CGG + chr8_1:84871916-84871935 None:intergenic 30.0%
TGATAATCCAACTGATTAGT+CGG + chr8_1:84872089-84872108 None:intergenic 30.0%
ACTAATCAGTTGGATTATCA+TGG - chr8_1:84872089-84872108 Msa1221330:intron 30.0%
AATTGACAACTGACAACAAA+AGG + chr8_1:84872120-84872139 None:intergenic 30.0%
ATATCAGAAAGAATCTTCCT+AGG + chr8_1:84872268-84872287 None:intergenic 30.0%
!!! TGGCTAGCTTTAGTTTTTTT+TGG - chr8_1:84872359-84872378 Msa1221330:intron 30.0%
!!! GGCTAGCTTTAGTTTTTTTT+GGG - chr8_1:84872360-84872379 Msa1221330:intron 30.0%
!!! ACTCGAGTTTCTTTTTTCTA+AGG - chr8_1:84872395-84872414 Msa1221330:intron 30.0%
GAAAACAAATAGCAGAAATC+AGG + chr8_1:84872660-84872679 None:intergenic 30.0%
!!! TCAGTAATATTTTGGTTTGG+GGG - chr8_1:84872689-84872708 Msa1221330:CDS 30.0%
!! CGGAAAAATGACTTTTTAGT+TGG + chr8_1:84872763-84872782 None:intergenic 30.0%
!! GGTTCTTTTATTTCCAATCT+TGG - chr8_1:84873004-84873023 Msa1221330:intron 30.0%
TGAATGGTACTTATTGAAAC+AGG - chr8_1:84873227-84873246 Msa1221330:CDS 30.0%
ACTGTGTTAAGTGTTAACTA+TGG - chr8_1:84873458-84873477 Msa1221330:CDS 30.0%
TGTTAAGTGTTAACTATGGT+CGG - chr8_1:84873462-84873481 Msa1221330:CDS 30.0%
CTTGAATCGAAATCTAATAG+AGG + chr8_1:84873524-84873543 None:intergenic 30.0%
CTCTATTAGATTTCGATTCA+AGG - chr8_1:84873522-84873541 Msa1221330:intron 30.0%
AAGTATTAAGTTAGAGAGGT+AGG - chr8_1:84873583-84873602 Msa1221330:intron 30.0%
TTTGTAGTTTCATTGTTGGT+TGG + chr8_1:84873626-84873645 None:intergenic 30.0%
AACCAACAATGAAACTACAA+AGG - chr8_1:84873625-84873644 Msa1221330:intron 30.0%
!! CAAAGGCATTTCTATTTCAA+AGG - chr8_1:84873642-84873661 Msa1221330:intron 30.0%
TTCTATTTCAAAGGATGATG+TGG - chr8_1:84873651-84873670 Msa1221330:CDS 30.0%
TTAATGTCTCAAGGAAATCA+GGG + chr8_1:84873883-84873902 None:intergenic 30.0%
TTTAATGTCTCAAGGAAATC+AGG + chr8_1:84873884-84873903 None:intergenic 30.0%
!! CGTGTATAATTTTGATAGGA+TGG - chr8_1:84873968-84873987 Msa1221330:CDS 30.0%
!! AATTTTGATAGGATGGACAT+TGG - chr8_1:84873975-84873994 Msa1221330:CDS 30.0%
TAAAGTGTACAGTAAGTCAT+TGG - chr8_1:84874089-84874108 Msa1221330:intron 30.0%
TAAGAAGAAACTACGTGTTA+AGG - chr8_1:84874122-84874141 Msa1221330:intron 30.0%
!! TCGAGTTTTATACATGATTC+AGG + chr8_1:84874450-84874469 None:intergenic 30.0%
ACAATGAAGATGATGAAGAT+TGG - chr8_1:84874496-84874515 Msa1221330:intron 30.0%
TATTTACAGACAATTCAAGC+TGG - chr8_1:84874634-84874653 Msa1221330:intron 30.0%
GCTTCTTATACACTGTATAA+AGG + chr8_1:84874863-84874882 None:intergenic 30.0%
CACAAAAAGTTGAATAATGC+TGG - chr8_1:84874948-84874967 Msa1221330:intron 30.0%
TTAAGGATCAACAGAAATTG+CGG - chr8_1:84875006-84875025 Msa1221330:intron 30.0%
AAATTGCGGAATGTAAGTTT+AGG - chr8_1:84875020-84875039 Msa1221330:intron 30.0%
TCCATCTTTATCTTGAATGT+AGG - chr8_1:84875046-84875065 Msa1221330:intron 30.0%
ACCTACATTCAAGATAAAGA+TGG + chr8_1:84875050-84875069 None:intergenic 30.0%
AATATAAGAAAATGGGTGGA+AGG + chr8_1:84875073-84875092 None:intergenic 30.0%
ACTTTCAATGGAAAAAATGC+AGG + chr8_1:84875326-84875345 None:intergenic 30.0%
! AATCAGAAAAGTGCATACTA+TGG - chr8_1:84875453-84875472 Msa1221330:intron 30.0%
AAACTACAAACTCTGAACAT+TGG + chr8_1:84875483-84875502 None:intergenic 30.0%
!!! TAATTTTTTTGGGAAAGTCC+AGG - chr8_1:84875548-84875567 Msa1221330:intron 30.0%
ATCTGAAAATGAACTTCATG+TGG - chr8_1:84875677-84875696 Msa1221330:intron 30.0%
GGGGAATACAATGATAAAAA+AGG + chr8_1:84875957-84875976 None:intergenic 30.0%
! AGAAAACAAATTTGAGACAC+AGG + chr8_1:84876202-84876221 None:intergenic 30.0%
! TCCATATACATTTTCCTTTC+AGG - chr8_1:84876422-84876441 Msa1221330:intron 30.0%
ACCTGAAAGGAAAATGTATA+TGG + chr8_1:84876426-84876445 None:intergenic 30.0%
TGCTATTGTTAAAACCTGAA+AGG + chr8_1:84876439-84876458 None:intergenic 30.0%
!! TTCAGGTTTTAACAATAGCA+TGG - chr8_1:84876439-84876458 Msa1221330:intron 30.0%
!! ATGATCATTTCTAGAGCTTT+GGG + chr8_1:84876573-84876592 None:intergenic 30.0%
!! TATGATCATTTCTAGAGCTT+TGG + chr8_1:84876574-84876593 None:intergenic 30.0%
ACCAATCATCAAAAGGATTT+GGG + chr8_1:84876679-84876698 None:intergenic 30.0%
TTGTTTGACCAATCATCAAA+AGG + chr8_1:84876686-84876705 None:intergenic 30.0%
AGTTAGATGAATAGGTTGTT+TGG - chr8_1:84877008-84877027 Msa1221330:five_prime_UTR 30.0%
TTGTTTGGACAAATGATAGT+AGG - chr8_1:84877023-84877042 Msa1221330:five_prime_UTR 30.0%
TCAAAAACAGATTACAATCG+CGG + chr8_1:84877225-84877244 None:intergenic 30.0%
TAAAACCAGAACAAATGGAA+AGG + chr8_1:84877275-84877294 None:intergenic 30.0%
!!! TTTCCATTTGTTCTGGTTTT+AGG - chr8_1:84877274-84877293 Msa1221330:five_prime_UTR 30.0%
!!! TTCCATTTGTTCTGGTTTTA+GGG - chr8_1:84877275-84877294 Msa1221330:five_prime_UTR 30.0%
AGTTATATCTCAAATCTGAC+AGG + chr8_1:84877322-84877341 None:intergenic 30.0%
AATATCTCTACGTGCAATCA+CGG + chr8_1:84870974-84870993 None:intergenic 35.0%
GTATTATTTGTGGTCTACTC+TGG + chr8_1:84871054-84871073 None:intergenic 35.0%
!! AATGGATTATTTGCCTGAGT+TGG + chr8_1:84871098-84871117 None:intergenic 35.0%
AGAGCGACAAAATCGATTAT+GGG + chr8_1:84871122-84871141 None:intergenic 35.0%
AAGAGCGACAAAATCGATTA+TGG + chr8_1:84871123-84871142 None:intergenic 35.0%
ACTGCTAAGTTATCTTTCTC+AGG - chr8_1:84871178-84871197 Msa1221330:three_prime_UTR 35.0%
! AGTGAGACGGAGATATTTTA+TGG + chr8_1:84871281-84871300 None:intergenic 35.0%
AAGATTAGAGTAGGTGATGA+TGG - chr8_1:84871525-84871544 Msa1221330:CDS 35.0%
CAATACCGAGATTGTTAAGT+TGG - chr8_1:84871908-84871927 Msa1221330:CDS 35.0%
!! GTTAAGTTGGACATTTGTTG+TGG - chr8_1:84871921-84871940 Msa1221330:intron 35.0%
TGAAAACTCACACACACAAA+GGG + chr8_1:84871973-84871992 None:intergenic 35.0%
TTGAAAACTCACACACACAA+AGG + chr8_1:84871974-84871993 None:intergenic 35.0%
TTAATGACCGACTAATCAGT+TGG - chr8_1:84872079-84872098 Msa1221330:intron 35.0%
CAACTATGGAATTCTGCATT+TGG - chr8_1:84872339-84872358 Msa1221330:intron 35.0%
TGTAATTGTTGAAGCTCTCA+AGG - chr8_1:84872562-84872581 Msa1221330:intron 35.0%
CTTACAACTCTACGAAGAAT+AGG + chr8_1:84872623-84872642 None:intergenic 35.0%
!!! TAATATTTTGGTTTGGGGGT+GGG - chr8_1:84872693-84872712 Msa1221330:CDS 35.0%
GTTTAAGAAGGGACATTATG+CGG + chr8_1:84872783-84872802 None:intergenic 35.0%
TATGACATGGCGTTTAAGAA+GGG + chr8_1:84872794-84872813 None:intergenic 35.0%
ATATGACATGGCGTTTAAGA+AGG + chr8_1:84872795-84872814 None:intergenic 35.0%
TTAAACGCCATGTCATATAG+TGG - chr8_1:84872797-84872816 Msa1221330:intron 35.0%
! TTTGATTTCAGTGCTCCATT+TGG - chr8_1:84872983-84873002 Msa1221330:intron 35.0%
! GAAATTGGTTTCCAACTTGT+AGG + chr8_1:84873328-84873347 None:intergenic 35.0%
ATTTGTCCATAGACTAAGCA+AGG - chr8_1:84873411-84873430 Msa1221330:CDS 35.0%
! ATCCTTTAAGCTAGCTTGAA+AGG - chr8_1:84873554-84873573 Msa1221330:intron 35.0%
TGCCTTTGTAGTTTCATTGT+TGG + chr8_1:84873630-84873649 None:intergenic 35.0%
ACACCACATTCTTTCTTTGT+CGG - chr8_1:84873726-84873745 Msa1221330:CDS 35.0%
ATGCAAGAACCTAAATTAGC+TGG + chr8_1:84873922-84873941 None:intergenic 35.0%
CTTACTGTACACTTTAAGCT+AGG + chr8_1:84874085-84874104 None:intergenic 35.0%
! GATGATGGCATTAATTGAAG+TGG + chr8_1:84874187-84874206 None:intergenic 35.0%
ATTTAATTCATTGGCGAGTC+TGG - chr8_1:84874226-84874245 Msa1221330:intron 35.0%
TCAACCAGAACAACATGAAT+TGG + chr8_1:84874396-84874415 None:intergenic 35.0%
CATTGTTAAAATCGCCTTCA+AGG + chr8_1:84874482-84874501 None:intergenic 35.0%
AAGATCATAGAGGAGAATGT+AGG - chr8_1:84874754-84874773 Msa1221330:intron 35.0%
AGATCATAGAGGAGAATGTA+GGG - chr8_1:84874755-84874774 Msa1221330:intron 35.0%
GAGATTGGAGAAAATAGGTA+AGG - chr8_1:84874914-84874933 Msa1221330:intron 35.0%
TTGGAGAAAATAGGTAAGGA+TGG - chr8_1:84874918-84874937 Msa1221330:intron 35.0%
TGGAGAAAATAGGTAAGGAT+GGG - chr8_1:84874919-84874938 Msa1221330:intron 35.0%
AAGTCGAAGAAAGTCTTCAA+CGG + chr8_1:84874982-84875001 None:intergenic 35.0%
TTAGAACACATGTCTTTGCA+TGG + chr8_1:84875157-84875176 None:intergenic 35.0%
CCAACATTTCTTGTATCTTC+TGG + chr8_1:84875203-84875222 None:intergenic 35.0%
CCAGAAGATACAAGAAATGT+TGG - chr8_1:84875200-84875219 Msa1221330:intron 35.0%
AGAATTGCTCTCCTGTTATA+AGG + chr8_1:84875259-84875278 None:intergenic 35.0%
TTCTCTTAGCGATAATCAGA+AGG - chr8_1:84875289-84875308 Msa1221330:intron 35.0%
AACACATGCTCAACTTTCAA+TGG + chr8_1:84875338-84875357 None:intergenic 35.0%
!! TTCCTTTGAAGCTCTCTATT+AGG - chr8_1:84875501-84875520 Msa1221330:intron 35.0%
TTCCTAATAGAGAGCTTCAA+AGG + chr8_1:84875506-84875525 None:intergenic 35.0%
TGAAGCTCTCTATTAGGAAT+AGG - chr8_1:84875507-84875526 Msa1221330:intron 35.0%
GAAGCTCTCTATTAGGAATA+GGG - chr8_1:84875508-84875527 Msa1221330:intron 35.0%
CGTAGATTCATTGGTGAAAA+AGG - chr8_1:84875575-84875594 Msa1221330:intron 35.0%
! TGAAAAAGGCATACGACAAT+TGG - chr8_1:84875589-84875608 Msa1221330:intron 35.0%
! GAAAAAGGCATACGACAATT+GGG - chr8_1:84875590-84875609 Msa1221330:intron 35.0%
GTGGAGTCAATTGATTATGA+TGG - chr8_1:84875696-84875715 Msa1221330:intron 35.0%
GAGTCAATTGATTATGATGG+CGG - chr8_1:84875699-84875718 Msa1221330:intron 35.0%
TGTTCAGAAGTAACAGACAT+GGG + chr8_1:84875756-84875775 None:intergenic 35.0%
! AGAGTATTCTCTACTGTGAA+GGG + chr8_1:84875907-84875926 None:intergenic 35.0%
! TAGAGTATTCTCTACTGTGA+AGG + chr8_1:84875908-84875927 None:intergenic 35.0%
TATGCAAATTTCTCTTGGAC+AGG + chr8_1:84876323-84876342 None:intergenic 35.0%
ACATCATACACAATCAGCAA+AGG + chr8_1:84876384-84876403 None:intergenic 35.0%
TGGTCGTTAGACAGATATAA+CGG + chr8_1:84876527-84876546 None:intergenic 35.0%
CTGTCTAACGACCATTTATT+AGG - chr8_1:84876533-84876552 Msa1221330:intron 35.0%
AGAAATGATCATAGCACAGT+AGG - chr8_1:84876581-84876600 Msa1221330:intron 35.0%
GAAATGATCATAGCACAGTA+GGG - chr8_1:84876582-84876601 Msa1221330:intron 35.0%
!! AAACCTGAAGTTGATGATTG+AGG + chr8_1:84876623-84876642 None:intergenic 35.0%
CCAATCATCAAAAGGATTTG+GGG + chr8_1:84876678-84876697 None:intergenic 35.0%
GACCAATCATCAAAAGGATT+TGG + chr8_1:84876680-84876699 None:intergenic 35.0%
! TTGATGATTGGTCAAACAAC+AGG - chr8_1:84876687-84876706 Msa1221330:CDS 35.0%
! TGATGATTGGTCAAACAACA+GGG - chr8_1:84876688-84876707 Msa1221330:CDS 35.0%
!!! TGTTGATGACTTCTTTTCAG+AGG - chr8_1:84876718-84876737 Msa1221330:exon 35.0%
GTATCTCATTACTTCTAACG+CGG + chr8_1:84876751-84876770 None:intergenic 35.0%
ATAACCATCCTCAGTATTCA+TGG + chr8_1:84876831-84876850 None:intergenic 35.0%
GATAGAGGAGTTAGATGAAT+AGG - chr8_1:84877000-84877019 Msa1221330:five_prime_UTR 35.0%
!! CAAGAATGTTGATAGTACCA+TGG + chr8_1:84877127-84877146 None:intergenic 35.0%
CATGGTACTATCAACATTCT+TGG - chr8_1:84877125-84877144 Msa1221330:five_prime_UTR 35.0%
TGCTGTAAAATCAGATACAC+AGG + chr8_1:84877157-84877176 None:intergenic 35.0%
!!! GTACAGTTTTGTTCAAGCTT+AGG - chr8_1:84877194-84877213 Msa1221330:five_prime_UTR 35.0%
!! TGATAGAGGAGAGTATTAAC+AGG + chr8_1:84877252-84877271 None:intergenic 35.0%
AACAAATGGAAAGGTGATAG+AGG + chr8_1:84877266-84877285 None:intergenic 35.0%
TATCACCTTTCCATTTGTTC+TGG - chr8_1:84877267-84877286 Msa1221330:five_prime_UTR 35.0%
!!! TCCATTTGTTCTGGTTTTAG+GGG - chr8_1:84877276-84877295 Msa1221330:five_prime_UTR 35.0%
ACTCAATGACTTTCCAACTC+AGG - chr8_1:84871082-84871101 Msa1221330:three_prime_UTR 40.0%
! GAGACGGAGATATTTTATGG+TGG + chr8_1:84871278-84871297 None:intergenic 40.0%
AATTAGTACCTAGCAAGAGC+AGG + chr8_1:84871733-84871752 None:intergenic 40.0%
GGAAGTAAACAGTTCCAACT+GGG + chr8_1:84872017-84872036 None:intergenic 40.0%
TGGAAGTAAACAGTTCCAAC+TGG + chr8_1:84872018-84872037 None:intergenic 40.0%
CCAACACGACAAAACATCTT+TGG + chr8_1:84872038-84872057 None:intergenic 40.0%
! CCAAAGATGTTTTGTCGTGT+TGG - chr8_1:84872035-84872054 Msa1221330:intron 40.0%
TATCGTTGCATAATGCACCT+AGG - chr8_1:84872248-84872267 Msa1221330:intron 40.0%
GCTATTTGAATGGCATAGCA+TGG - chr8_1:84872315-84872334 Msa1221330:intron 40.0%
AATTGTTGAAGCTCTCAAGG+TGG - chr8_1:84872565-84872584 Msa1221330:intron 40.0%
!!! GTAATATTTTGGTTTGGGGG+TGG - chr8_1:84872692-84872711 Msa1221330:CDS 40.0%
!!! AATATTTTGGTTTGGGGGTG+GGG - chr8_1:84872694-84872713 Msa1221330:CDS 40.0%
CCATGTCATATAGTGGTCTT+CGG - chr8_1:84872804-84872823 Msa1221330:intron 40.0%
ACTGTCATGCTGTGAACAAT+AGG + chr8_1:84872948-84872967 None:intergenic 40.0%
GAATGATGTCACACCAAGAT+TGG + chr8_1:84873020-84873039 None:intergenic 40.0%
GAATGATGTCACACCAAGAT+TGG + chr8_1:84873020-84873039 None:intergenic 40.0%
TTGCAACCTTGCTTAGTCTA+TGG + chr8_1:84873420-84873439 None:intergenic 40.0%
! CTCCTTTCAAGCTAGCTTAA+AGG + chr8_1:84873559-84873578 None:intergenic 40.0%
ATGCCGACAAAGAAAGAATG+TGG + chr8_1:84873732-84873751 None:intergenic 40.0%
TCTTCCCCTAAAAGGATTGA+AGG - chr8_1:84874279-84874298 Msa1221330:intron 40.0%
! AGGACCTTCAATCCTTTTAG+GGG + chr8_1:84874286-84874305 None:intergenic 40.0%
! CAGGACCTTCAATCCTTTTA+GGG + chr8_1:84874287-84874306 None:intergenic 40.0%
! TCAGGACCTTCAATCCTTTT+AGG + chr8_1:84874288-84874307 None:intergenic 40.0%
AAAAGGATTGAAGGTCCTGA+TGG - chr8_1:84874288-84874307 Msa1221330:intron 40.0%
GAAACTTGCGGCTTCAATTT+AGG - chr8_1:84874313-84874332 Msa1221330:intron 40.0%
! ACTTTTCCTCCTGTGAATAG+AGG + chr8_1:84874354-84874373 None:intergenic 40.0%
TCTATTCACAGGAGGAAAAG+TGG - chr8_1:84874353-84874372 Msa1221330:intron 40.0%
CATGGCTTTCAAATTCCTCT+TGG + chr8_1:84874524-84874543 None:intergenic 40.0%
AGAGGAATTTGAAAGCCATG+TGG - chr8_1:84874524-84874543 Msa1221330:intron 40.0%
TCAACAAAGGTCTCTTTCCT+TGG + chr8_1:84874560-84874579 None:intergenic 40.0%
GGAAAGAGACCTTTGTTGAA+CGG - chr8_1:84874561-84874580 Msa1221330:intron 40.0%
GAAAGAGACCTTTGTTGAAC+GGG - chr8_1:84874562-84874581 Msa1221330:intron 40.0%
AAAGAGACCTTTGTTGAACG+GGG - chr8_1:84874563-84874582 Msa1221330:intron 40.0%
CAGACAATTCAAGCTGGATA+AGG - chr8_1:84874640-84874659 Msa1221330:intron 40.0%
TCATGCCAAGCCTGAATTTA+CGG + chr8_1:84874668-84874687 None:intergenic 40.0%
TAAATTCAGGCTTGGCATGA+AGG - chr8_1:84874668-84874687 Msa1221330:intron 40.0%
!! ATGAAGGTTGCATCTGGTTT+TGG - chr8_1:84874684-84874703 Msa1221330:intron 40.0%
AACAGTAAAAGCCACTGTCT+TGG + chr8_1:84874733-84874752 None:intergenic 40.0%
!! AGAAGGGAAAGCATTGAAGT+TGG + chr8_1:84874800-84874819 None:intergenic 40.0%
AAGCATTATCCTCCTGCATT+GGG - chr8_1:84874879-84874898 Msa1221330:intron 40.0%
! TGAAGACTTTCTTCGACTTG+TGG - chr8_1:84874983-84875002 Msa1221330:intron 40.0%
! CTTTCTTCGACTTGTGGTTA+AGG - chr8_1:84874989-84875008 Msa1221330:intron 40.0%
TTAATGTAGATCCTTGGGAG+CGG - chr8_1:84875098-84875117 Msa1221330:CDS 40.0%
CGGTATGTCAAACAAGATGT+GGG - chr8_1:84875118-84875137 Msa1221330:intron 40.0%
! GCAAAGACATGTGTTCTAAG+CGG - chr8_1:84875158-84875177 Msa1221330:intron 40.0%
! CAAAGACATGTGTTCTAAGC+GGG - chr8_1:84875159-84875178 Msa1221330:intron 40.0%
TGAGCATGTGTTTATGTTGC+TGG - chr8_1:84875346-84875365 Msa1221330:intron 40.0%
GTTCAGAAGTAACAGACATG+GGG + chr8_1:84875755-84875774 None:intergenic 40.0%
CTGTTCAGAAGTAACAGACA+TGG + chr8_1:84875757-84875776 None:intergenic 40.0%
ATTAATTCAGCGATGCCAGT+TGG - chr8_1:84875780-84875799 Msa1221330:CDS 40.0%
GAGTATTCTCTACTGTGAAG+GGG + chr8_1:84875906-84875925 None:intergenic 40.0%
AGGAAACAGAAACGCTGTTA+GGG + chr8_1:84876080-84876099 None:intergenic 40.0%
AAGGAAACAGAAACGCTGTT+AGG + chr8_1:84876081-84876100 None:intergenic 40.0%
TCAAAAGAAAAGGAGAAGGG+AGG + chr8_1:84876158-84876177 None:intergenic 40.0%
CGCTCAAAAGAAAAGGAGAA+GGG + chr8_1:84876161-84876180 None:intergenic 40.0%
TCGCTCAAAAGAAAAGGAGA+AGG + chr8_1:84876162-84876181 None:intergenic 40.0%
GTGACATCGCTCAAAAGAAA+AGG + chr8_1:84876168-84876187 None:intergenic 40.0%
! TTAACAATAGCATGGTGACG+AGG - chr8_1:84876447-84876466 Msa1221330:intron 40.0%
AGAGCTGGAATTTCCAATCA+AGG + chr8_1:84876486-84876505 None:intergenic 40.0%
TGATTGGAAATTCCAGCTCT+CGG - chr8_1:84876486-84876505 Msa1221330:intron 40.0%
GGTCGTTAGACAGATATAAC+GGG + chr8_1:84876526-84876545 None:intergenic 40.0%
! GGTGAGCATTGCCTAATAAA+TGG + chr8_1:84876547-84876566 None:intergenic 40.0%
!! CATTTCTAGAGCTTTGGGAT+TGG + chr8_1:84876568-84876587 None:intergenic 40.0%
!! CCCCAAATCCTTTTGATGAT+TGG - chr8_1:84876675-84876694 Msa1221330:CDS 40.0%
TCATCCTTCCATGAATACTG+AGG - chr8_1:84876820-84876839 Msa1221330:intron 40.0%
TAGGAGATGGCATGAATGAT+GGG + chr8_1:84876859-84876878 None:intergenic 40.0%
ATAGGAGATGGCATGAATGA+TGG + chr8_1:84876860-84876879 None:intergenic 40.0%
!!! CCATTTGTTCTGGTTTTAGG+GGG - chr8_1:84877277-84877296 Msa1221330:five_prime_UTR 40.0%
TCTCAAATCTGACAGGTGTT+CGG + chr8_1:84877315-84877334 None:intergenic 40.0%
! GAAAGTGACGGGGAGTTTAA+CGG + chr8_1:84871214-84871233 None:intergenic 45.0%
AACAGAAAGCGGGAAAGTGA+CGG + chr8_1:84871226-84871245 None:intergenic 45.0%
ATGATCAGCCTGAACGAAAG+AGG - chr8_1:84871707-84871726 Msa1221330:CDS 45.0%
!! GGACATTTGTTGTGGTTACC+CGG - chr8_1:84871929-84871948 Msa1221330:intron 45.0%
!! GACATTTGTTGTGGTTACCC+GGG - chr8_1:84871930-84871949 Msa1221330:intron 45.0%
AGGATCTTAGATTCGATCCC+GGG + chr8_1:84871950-84871969 None:intergenic 45.0%
GAGGATCTTAGATTCGATCC+CGG + chr8_1:84871951-84871970 None:intergenic 45.0%
AAACTCACACACACAAAGGG+AGG + chr8_1:84871970-84871989 None:intergenic 45.0%
CTACTCTACTGTATCCCAGT+TGG - chr8_1:84872000-84872019 Msa1221330:intron 45.0%
TGGCATAGCATGGTCAACTA+TGG - chr8_1:84872325-84872344 Msa1221330:intron 45.0%
!!! ATATTTTGGTTTGGGGGTGG+GGG - chr8_1:84872695-84872714 Msa1221330:CDS 45.0%
CCGAAGACCACTATATGACA+TGG + chr8_1:84872807-84872826 None:intergenic 45.0%
GAAACAGGTGAGTGAAGAAG+TGG - chr8_1:84873242-84873261 Msa1221330:CDS 45.0%
TTAGGTCCTGCAAGACTTAG+TGG - chr8_1:84873282-84873301 Msa1221330:intron 45.0%
GGTAGGTATCCTGTAGAAAG+AGG - chr8_1:84873600-84873619 Msa1221330:intron 45.0%
AAGAAAGTAGCAGGGTCTTG+TGG + chr8_1:84873759-84873778 None:intergenic 45.0%
ATGTCTCAAGGAAATCAGGG+AGG + chr8_1:84873880-84873899 None:intergenic 45.0%
TAGGCTCAAATCGGAGAATG+GGG + chr8_1:84874058-84874077 None:intergenic 45.0%
GTAGGCTCAAATCGGAGAAT+GGG + chr8_1:84874059-84874078 None:intergenic 45.0%
ACACTTTAAGCTAGGCAGGT+AGG + chr8_1:84874077-84874096 None:intergenic 45.0%
CTGTACACTTTAAGCTAGGC+AGG + chr8_1:84874081-84874100 None:intergenic 45.0%
ATTCCAGGTCTTCCCCTAAA+AGG - chr8_1:84874271-84874290 Msa1221330:intron 45.0%
!! AATCCTTTTAGGGGAAGACC+TGG + chr8_1:84874277-84874296 None:intergenic 45.0%
GTCCTGATGGTAGAAACTTG+CGG - chr8_1:84874301-84874320 Msa1221330:intron 45.0%
TGAATAGAGGAAGAGCCAGT+CGG + chr8_1:84874341-84874360 None:intergenic 45.0%
TTCACAGGAGGAAAAGTGGA+AGG - chr8_1:84874357-84874376 Msa1221330:intron 45.0%
GGCTCCAATTCATGTTGTTC+TGG - chr8_1:84874389-84874408 Msa1221330:intron 45.0%
TGTTACCACACTTCCACTGT+TGG + chr8_1:84874421-84874440 None:intergenic 45.0%
! AGTGGAAGTGTGGTAACATC+TGG - chr8_1:84874423-84874442 Msa1221330:intron 45.0%
TGATGAAGATTGGAGCCAAG+AGG - chr8_1:84874506-84874525 Msa1221330:intron 45.0%
TGCAATTCCCCGTTCAACAA+AGG + chr8_1:84874573-84874592 None:intergenic 45.0%
GGAATTGCAAGTGACACTCA+AGG - chr8_1:84874584-84874603 Msa1221330:intron 45.0%
ATTGCAAGTGACACTCAAGG+AGG - chr8_1:84874587-84874606 Msa1221330:intron 45.0%
TTGCAAGTGACACTCAAGGA+GGG - chr8_1:84874588-84874607 Msa1221330:intron 45.0%
AAGGAGGGAGTTGGAACATT+AGG - chr8_1:84874603-84874622 Msa1221330:intron 45.0%
AGGAGGGAGTTGGAACATTA+GGG - chr8_1:84874604-84874623 Msa1221330:intron 45.0%
GGATAAGGAGCCGTAAATTC+AGG - chr8_1:84874655-84874674 Msa1221330:intron 45.0%
! GGTGTTGTAGGTTGCAAGAA+GGG + chr8_1:84874816-84874835 None:intergenic 45.0%
!! TGGTGTTGTAGGTTGCAAGA+AGG + chr8_1:84874817-84874836 None:intergenic 45.0%
! GAAGCATTATCCTCCTGCAT+TGG - chr8_1:84874878-84874897 Msa1221330:intron 45.0%
GCGGTATGTCAAACAAGATG+TGG - chr8_1:84875117-84875136 Msa1221330:intron 45.0%
CCAATGAATCTACGTACACC+TGG + chr8_1:84875569-84875588 None:intergenic 45.0%
CCAGGTGTACGTAGATTCAT+TGG - chr8_1:84875566-84875585 Msa1221330:intron 45.0%
GTACGATGGCAAATCACTTG+TGG - chr8_1:84875626-84875645 Msa1221330:intron 45.0%
AGAAGTAACAGACATGGGGA+GGG + chr8_1:84875751-84875770 None:intergenic 45.0%
AACAATCGCTTACCTCCAAC+TGG + chr8_1:84875798-84875817 None:intergenic 45.0%
GTTGGAGGTAAGCGATTGTT+AGG - chr8_1:84875798-84875817 Msa1221330:intron 45.0%
TGGAATTTCCAATCAAGGCC+TGG + chr8_1:84876481-84876500 None:intergenic 45.0%
ATCAAAATGACTCCGAGAGC+TGG + chr8_1:84876501-84876520 None:intergenic 45.0%
TGATCATAGCACAGTAGGGT+TGG - chr8_1:84876586-84876605 Msa1221330:intron 45.0%
!! CCTGAAGTTGATGATTGAGG+AGG + chr8_1:84876620-84876639 None:intergenic 45.0%
CCTCCTCAATCATCAACTTC+AGG - chr8_1:84876617-84876636 Msa1221330:intron 45.0%
! TCATCAAAAGGATTTGGGGC+AGG + chr8_1:84876674-84876693 None:intergenic 45.0%
TTGGTCAAACAACAGGGACA+AGG - chr8_1:84876694-84876713 Msa1221330:CDS 45.0%
TGGTCAAACAACAGGGACAA+GGG - chr8_1:84876695-84876714 Msa1221330:CDS 45.0%
! TTGCTTCGCCTTTTCAGCAT+GGG - chr8_1:84876794-84876813 Msa1221330:intron 45.0%
CCATCCTCAGTATTCATGGA+AGG + chr8_1:84876827-84876846 None:intergenic 45.0%
CCTTCCATGAATACTGAGGA+TGG - chr8_1:84876824-84876843 Msa1221330:intron 45.0%
TGAAGATCAAGGCAGCAATG+AGG - chr8_1:84876933-84876952 Msa1221330:intron 45.0%
GAAAGATAGCAGCTGAGAAG+CGG - chr8_1:84876972-84876991 Msa1221330:intron 45.0%
AAAGATAGCAGCTGAGAAGC+GGG - chr8_1:84876973-84876992 Msa1221330:intron 45.0%
! CATGGACTGCACAATTTGGT+TGG + chr8_1:84877109-84877128 None:intergenic 45.0%
CAACCAAATTGTGCAGTCCA+TGG - chr8_1:84877107-84877126 Msa1221330:five_prime_UTR 45.0%
! GTACCATGGACTGCACAATT+TGG + chr8_1:84877113-84877132 None:intergenic 45.0%
CCCCCTAAAACCAGAACAAA+TGG + chr8_1:84877280-84877299 None:intergenic 45.0%
! TGTGGATTGCACCAGTACAT+CGG - chr8_1:84877423-84877442 Msa1221330:intron 45.0%
!! TTAATTTAAATTTAATTCAT+TGG - chr8_1:84874217-84874236 Msa1221330:intron 5.0%
!! AAAAATAAGATATTAAAAAA+TGG + chr8_1:84874837-84874856 None:intergenic 5.0%
!! AAAATAAAATATAAGAAAAT+GGG + chr8_1:84875080-84875099 None:intergenic 5.0%
!! TAAAATAAAATATAAGAAAA+TGG + chr8_1:84875081-84875100 None:intergenic 5.0%
!!! TTTAAAATATTTTTAGTATT+TGG + chr8_1:84876292-84876311 None:intergenic 5.0%
ACAGAAAGCGGGAAAGTGAC+GGG + chr8_1:84871225-84871244 None:intergenic 50.0%
! CGAAGTGTAACGGAGTGAGA+CGG + chr8_1:84871294-84871313 None:intergenic 50.0%
TTTCCCCATACTTGCTCCGT+CGG + chr8_1:84871662-84871681 None:intergenic 50.0%
ACGGAGCAAGTATGGGGAAA+AGG - chr8_1:84871662-84871681 Msa1221330:CDS 50.0%
CGGAGCAAGTATGGGGAAAA+GGG - chr8_1:84871663-84871682 Msa1221330:CDS 50.0%
ATCATCTCCACCACCCTCAA+GGG + chr8_1:84871689-84871708 None:intergenic 50.0%
TCGGTATTGTCAGCTGAGCT+AGG + chr8_1:84871897-84871916 None:intergenic 50.0%
TGAAGAAGTGGAGCGTGCTT+TGG - chr8_1:84873254-84873273 Msa1221330:intron 50.0%
GTCCTGCAAGACTTAGTGGA+AGG - chr8_1:84873286-84873305 Msa1221330:intron 50.0%
GACCTTCCACTAAGTCTTGC+AGG + chr8_1:84873291-84873310 None:intergenic 50.0%
!! GTTGGTTGGCCTCTTTCTAC+AGG + chr8_1:84873612-84873631 None:intergenic 50.0%
GGAAATCAGGGAGGCAGTAT+TGG + chr8_1:84873871-84873890 None:intergenic 50.0%
GGTAGGCTCAAATCGGAGAA+TGG + chr8_1:84874060-84874079 None:intergenic 50.0%
CTAGGCAGGTAGGCTCAAAT+CGG + chr8_1:84874067-84874086 None:intergenic 50.0%
AGCCGCAAGTTTCTACCATC+AGG + chr8_1:84874306-84874325 None:intergenic 50.0%
GCTTCAATTTAGGTCCCGAC+TGG - chr8_1:84874323-84874342 Msa1221330:intron 50.0%
GAATAGAGGAAGAGCCAGTC+GGG + chr8_1:84874340-84874359 None:intergenic 50.0%
! CTGGCTCTTCCTCTATTCAC+AGG - chr8_1:84874342-84874361 Msa1221330:intron 50.0%
GCTCTTCCTCTATTCACAGG+AGG - chr8_1:84874345-84874364 Msa1221330:intron 50.0%
! GTTCTGGTTGATGCCAACAG+TGG - chr8_1:84874405-84874424 Msa1221330:intron 50.0%
TGATGCCAACAGTGGAAGTG+TGG - chr8_1:84874413-84874432 Msa1221330:intron 50.0%
CTCGATGTCGTTGTCCTTGA+AGG - chr8_1:84874465-84874484 Msa1221330:intron 50.0%
CTTGGCGTTCTTTCACCACA+TGG + chr8_1:84874542-84874561 None:intergenic 50.0%
CATGTGGTGAAAGAACGCCA+AGG - chr8_1:84874540-84874559 Msa1221330:intron 50.0%
GGAGGGAGTTGGAACATTAG+GGG - chr8_1:84874605-84874624 Msa1221330:intron 50.0%
AGGAGCCGTAAATTCAGGCT+TGG - chr8_1:84874660-84874679 Msa1221330:intron 50.0%
CTTGGCATGAAGGTTGCATC+TGG - chr8_1:84874678-84874697 Msa1221330:intron 50.0%
CATTCGTGAAGCCAAGACAG+TGG - chr8_1:84874719-84874738 Msa1221330:intron 50.0%
ACATCATCACCCAATGCAGG+AGG + chr8_1:84874891-84874910 None:intergenic 50.0%
TGTTTGACATACCGCTCCCA+AGG + chr8_1:84875112-84875131 None:intergenic 50.0%
TCTGTGCTCATGCAAGTGTG+AGG + chr8_1:84875423-84875442 None:intergenic 50.0%
GAGCAGGTTGTAGAGTACGA+TGG - chr8_1:84875612-84875631 Msa1221330:intron 50.0%
CAGAAGTAACAGACATGGGG+AGG + chr8_1:84875752-84875771 None:intergenic 50.0%
AATTCAGCGATGCCAGTTGG+AGG - chr8_1:84875783-84875802 Msa1221330:CDS 50.0%
TACTGTGAAGGGGAAACCCT+TGG + chr8_1:84875896-84875915 None:intergenic 50.0%
AGAAAAGGAGAAGGGAGGTG+AGG + chr8_1:84876153-84876172 None:intergenic 50.0%
TATCCAAGCCAGGCCTTGAT+TGG - chr8_1:84876470-84876489 Msa1221330:intron 50.0%
TTTCCAATCAAGGCCTGGCT+TGG + chr8_1:84876476-84876495 None:intergenic 50.0%
! TCAAAAGGATTTGGGGCAGG+TGG + chr8_1:84876671-84876690 None:intergenic 50.0%
! CTTGCTTCGCCTTTTCAGCA+TGG - chr8_1:84876793-84876812 Msa1221330:intron 50.0%
GATGACCTCCCATGCTGAAA+AGG + chr8_1:84876805-84876824 None:intergenic 50.0%
TCGAAGTTCGGCATAGGAGA+TGG + chr8_1:84876872-84876891 None:intergenic 50.0%
TCCTATGCCGAACTTCGATG+AGG - chr8_1:84876874-84876893 Msa1221330:intron 50.0%
TCCTCATCGAAGTTCGGCAT+AGG + chr8_1:84876878-84876897 None:intergenic 50.0%
GAGCGATCCTCATCGAAGTT+CGG + chr8_1:84876884-84876903 None:intergenic 50.0%
TGTGGGATGGCTGAAGATCA+AGG - chr8_1:84876922-84876941 Msa1221330:intron 50.0%
AGATCAAGGCAGCAATGAGG+TGG - chr8_1:84876936-84876955 Msa1221330:intron 50.0%
GATCAAGGCAGCAATGAGGT+GGG - chr8_1:84876937-84876956 Msa1221330:intron 50.0%
ATCAAGGCAGCAATGAGGTG+GGG - chr8_1:84876938-84876957 Msa1221330:intron 50.0%
TGCTAAGGAAGCCGATGTAC+TGG + chr8_1:84877437-84877456 None:intergenic 50.0%
CAGAAAGCGGGAAAGTGACG+GGG + chr8_1:84871224-84871243 None:intergenic 55.0%
ATGCAGAGACCACCTACCGA+CGG - chr8_1:84871643-84871662 Msa1221330:CDS 55.0%
ATACTTGCTCCGTCGGTAGG+TGG + chr8_1:84871655-84871674 None:intergenic 55.0%
ACCTACCGACGGAGCAAGTA+TGG - chr8_1:84871654-84871673 Msa1221330:CDS 55.0%
CCTACCGACGGAGCAAGTAT+GGG - chr8_1:84871655-84871674 Msa1221330:CDS 55.0%
CTACCGACGGAGCAAGTATG+GGG - chr8_1:84871656-84871675 Msa1221330:CDS 55.0%
TATGGGGAAAAGGGCCCTTG+AGG - chr8_1:84871672-84871691 Msa1221330:CDS 55.0%
ATGGGGAAAAGGGCCCTTGA+GGG - chr8_1:84871673-84871692 Msa1221330:CDS 55.0%
CATCATCTCCACCACCCTCA+AGG + chr8_1:84871690-84871709 None:intergenic 55.0%
AGAGCAGGCCTCTTTCGTTC+AGG + chr8_1:84871718-84871737 None:intergenic 55.0%
GAAAGAGGCCTGCTCTTGCT+AGG - chr8_1:84871722-84871741 Msa1221330:CDS 55.0%
GAGCGTGCTTTGGCGAAGTT+AGG - chr8_1:84873264-84873283 Msa1221330:intron 55.0%
AGGAAAAGTGGAAGGCGAGC+AGG - chr8_1:84874365-84874384 Msa1221330:intron 55.0%
GGAAAAGTGGAAGGCGAGCA+GGG - chr8_1:84874366-84874385 Msa1221330:intron 55.0%
GAAAAGTGGAAGGCGAGCAG+GGG - chr8_1:84874367-84874386 Msa1221330:intron 55.0%
AAAAGTGGAAGGCGAGCAGG+GGG - chr8_1:84874368-84874387 Msa1221330:intron 55.0%
GTGACACTCAAGGAGGGAGT+TGG - chr8_1:84874594-84874613 Msa1221330:intron 55.0%
AACCACGTCTATGAGCTGCG+TGG - chr8_1:84875233-84875252 Msa1221330:intron 55.0%
!! GAGCTGCGTGGCCTTATAAC+AGG - chr8_1:84875245-84875264 Msa1221330:intron 55.0%
GGCATACGACAATTGGGAGC+AGG - chr8_1:84875596-84875615 Msa1221330:intron 55.0%
GTAACAGACATGGGGAGGGA+TGG + chr8_1:84875747-84875766 None:intergenic 55.0%
AGGGGAGAATCACTCCTCCA+AGG - chr8_1:84875876-84875895 Msa1221330:intron 55.0%
GGGGAGAATCACTCCTCCAA+GGG - chr8_1:84875877-84875896 Msa1221330:intron 55.0%
TGTGAAGGGGAAACCCTTGG+AGG + chr8_1:84875893-84875912 None:intergenic 55.0%
!! AGCACAGTAGGGTTGGCTCT+TGG - chr8_1:84876593-84876612 Msa1221330:intron 55.0%
GCATGGAAGAGCTAGCAGCA+TGG + chr8_1:84876646-84876665 None:intergenic 55.0%
! ATTTGGGGCAGGTGGTTGCA+TGG + chr8_1:84876663-84876682 None:intergenic 55.0%
! CTTCGCCTTTTCAGCATGGG+AGG - chr8_1:84876797-84876816 Msa1221330:intron 55.0%
TCGTCCTGGCAAAGCTGTTG+TGG - chr8_1:84876904-84876923 Msa1221330:intron 55.0%
CGTCCTGGCAAAGCTGTTGT+GGG - chr8_1:84876905-84876924 Msa1221330:intron 55.0%
CATCCCACAACAGCTTTGCC+AGG + chr8_1:84876911-84876930 None:intergenic 55.0%
CTGGCAAAGCTGTTGTGGGA+TGG - chr8_1:84876909-84876928 Msa1221330:intron 55.0%
! TGAGAAGCGGGCTCAGATAG+AGG - chr8_1:84876985-84877004 Msa1221330:intron 55.0%
CCCATACTTGCTCCGTCGGT+AGG + chr8_1:84871658-84871677 None:intergenic 60.0%
AAAAGGGCCCTTGAGGGTGG+TGG - chr8_1:84871679-84871698 Msa1221330:CDS 60.0%
! GGTGACGAGGTATCCAAGCC+AGG - chr8_1:84876460-84876479 Msa1221330:intron 60.0%
GATGAGGATCGCTCTCGTCC+TGG - chr8_1:84876890-84876909 Msa1221330:intron 60.0%
GGGAAAAGGGCCCTTGAGGG+TGG - chr8_1:84871676-84871695 Msa1221330:CDS 65.0%
!! TTGGTTTGGGGGTGGGGGAC+TGG - chr8_1:84872700-84872719 Msa1221330:CDS 65.0%
GGCCACGCAGCTCATAGACG+TGG + chr8_1:84875238-84875257 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 84870911 84877461 84870911 ID=Msa1221330;Name=Msa1221330
chr8_1 mRNA 84870911 84877461 84870911 ID=Msa1221330-mRNA-1;Parent=Msa1221330;Name=Msa1221330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=456|0.7|0.72|1|0.6|0.63|11|440|572
chr8_1 exon 84870911 84871928 84870911 ID=Msa1221330-mRNA-1:exon:30524;Parent=Msa1221330-mRNA-1
chr8_1 exon 84872652 84872802 84872652 ID=Msa1221330-mRNA-1:exon:30523;Parent=Msa1221330-mRNA-1
chr8_1 exon 84873062 84873265 84873062 ID=Msa1221330-mRNA-1:exon:30522;Parent=Msa1221330-mRNA-1
chr8_1 exon 84873341 84873501 84873341 ID=Msa1221330-mRNA-1:exon:30521;Parent=Msa1221330-mRNA-1
chr8_1 exon 84873649 84873885 84873649 ID=Msa1221330-mRNA-1:exon:30520;Parent=Msa1221330-mRNA-1
chr8_1 exon 84873943 84874094 84873943 ID=Msa1221330-mRNA-1:exon:30519;Parent=Msa1221330-mRNA-1
chr8_1 exon 84875065 84875123 84875065 ID=Msa1221330-mRNA-1:exon:30518;Parent=Msa1221330-mRNA-1
chr8_1 exon 84875735 84875810 84875735 ID=Msa1221330-mRNA-1:exon:30517;Parent=Msa1221330-mRNA-1
chr8_1 exon 84876629 84876753 84876629 ID=Msa1221330-mRNA-1:exon:30516;Parent=Msa1221330-mRNA-1
chr8_1 exon 84876992 84877385 84876992 ID=Msa1221330-mRNA-1:exon:30515;Parent=Msa1221330-mRNA-1
chr8_1 exon 84877424 84877461 84877424 ID=Msa1221330-mRNA-1:exon:30514;Parent=Msa1221330-mRNA-1
chr8_1 five_prime_UTR 84877424 84877461 84877424 ID=Msa1221330-mRNA-1:five_prime_utr;Parent=Msa1221330-mRNA-1
chr8_1 five_prime_UTR 84876992 84877385 84876992 ID=Msa1221330-mRNA-1:five_prime_utr;Parent=Msa1221330-mRNA-1
chr8_1 five_prime_UTR 84876730 84876753 84876730 ID=Msa1221330-mRNA-1:five_prime_utr;Parent=Msa1221330-mRNA-1
chr8_1 CDS 84876629 84876729 84876629 ID=Msa1221330-mRNA-1:cds;Parent=Msa1221330-mRNA-1
chr8_1 CDS 84875735 84875810 84875735 ID=Msa1221330-mRNA-1:cds;Parent=Msa1221330-mRNA-1
chr8_1 CDS 84875065 84875123 84875065 ID=Msa1221330-mRNA-1:cds;Parent=Msa1221330-mRNA-1
chr8_1 CDS 84873943 84874094 84873943 ID=Msa1221330-mRNA-1:cds;Parent=Msa1221330-mRNA-1
chr8_1 CDS 84873649 84873885 84873649 ID=Msa1221330-mRNA-1:cds;Parent=Msa1221330-mRNA-1
chr8_1 CDS 84873341 84873501 84873341 ID=Msa1221330-mRNA-1:cds;Parent=Msa1221330-mRNA-1
chr8_1 CDS 84873062 84873265 84873062 ID=Msa1221330-mRNA-1:cds;Parent=Msa1221330-mRNA-1
chr8_1 CDS 84872652 84872802 84872652 ID=Msa1221330-mRNA-1:cds;Parent=Msa1221330-mRNA-1
chr8_1 CDS 84871351 84871928 84871351 ID=Msa1221330-mRNA-1:cds;Parent=Msa1221330-mRNA-1
chr8_1 three_prime_UTR 84870911 84871350 84870911 ID=Msa1221330-mRNA-1:three_prime_utr;Parent=Msa1221330-mRNA-1
Gene Sequence

>Msa1221330

ATGCAGAGACCACCTACCGACGGAGCAAGTATGGGGAAAAGGGCCCTTGAGGGTGGTGGAGATGATGATCAGCCTGAACGAAAGAGGCCTGCTCTTGCTAGTGTAATTGTTGAAGCTCTCAAGGTGGACAGTTTACAGAAGCTTTGCTCATCTTTAGAACCTATTCTTCGTAGAGTTGTGAGTGAAGAAGTGGAGCGTGCTTTGGCGAAGTTAGGTCCTGCAAGACTTAGTGGAAGGTCTTCCCCTAAAAGGATTGAAGGTCCTGATGGTAGAAACTTGCGGCTTCAATTTAGGTCCCGACTGGCTCTTCCTCTATTCACAGGAGGAAAAGTGGAAGGCGAGCAGGGGGCTCCAATTCATGTTGTTCTGGTTGATGCCAACAGTGGAAGCGATTTTAACAATGAAGATGATGAAGATTGGAGCCAAGAGGAATTTGAAAGCCATGTGGTGAAAGAACGCCAAGGAAAGAGACCTTTGTTGAACGGGGAATTGCAAGTGACACTCAAGGAGGGAGTTGGAACATTAGGGGAACTGATATTTACAGACAATTCAAGCTGGATAAGGAGCCGTAAATTCAGGCTTGGCATGAAGGTTGCATCTGGTTTTGGCGAGTCTATACGCATTCTGTATAAGAAGCATTATCCTCCTGCATTGGGTGATGATGTATGGAGATTGGAGAAAATAGGTAAGGATGGGTCATTTCACAAAAAGTTGAATAATGCTGGAATATTCACCGTTGAAGACTTTCTTCGACTTGTGGTTAAGGATCAACAGAAATTGCGGAATATCCTTGGGAGCGGTATGTCAAACAAGATGTGGGAAGCTCTCTTAGACCATGCAAAGACATGTGTTCTAAGCGGGAAGCTTTATGTTTATTATCCAGAAGATACAAGAAATGTTGGTGTTATTTTTAACCACGTCTATGAGCTGCGTGGCCTTATAACAGGAGAGCAATTCTTTTCTGCTGATTCTCTTAGCGATAATCAGAAGGTGTACGTAGATTCATTGGTGAAAAAGGCATACGACAATTGGGAGCAGGTTGTAGAGTACGATGGCAAATCACTTGTGGATGCTGAGCAAAATAACAACACTGTTGAATCTGAAAATGAACTTCATGTGGAGTCAATTGATTATGATGGCGGTTTTAACAATAGCATGGTGACGAGGTATCCAAGCCAGGCCTTGATTGGAAATTCCAGCTCTCGGAGTCATTTTGATGACCCGTTATATCTGTCTAACGACCATTTATTAGGCAATGCTCACCAATCCCAAAGCTCTAGAAATGATCATAGCACAGTAGGGTTGGCTCTTGGTCCTCCTCAATCATCAACTTCAGGTTTCCATGCTGCTAGCTCTTCCATGCAACCACCTGCCCCAAATCCTTTTGATGATTGGTCAAACAACAGGGACAAGGGTGTTGATGACTTCTTTTCAGAGGATGAAATCCGCGTTAGAAGTAATGAGATACTAGAGAATGAAGACATGCAGCACTTGCTTCGCCTTTTCAGCATGGGAGGTCATCCTTCCATGAATACTGAGGATGGTTATTCATTCCCATCATTCATGCCATCTCCTATGCCGAACTTCGATGAGGATCGCTCTCGTCCTGGCAAAGCTGTTGTGGGATGGCTGAAGATCAAGGCAGCAATGAGGTGGGGCTTCTTTATCAGAAAGATAGCAGCTGAGAAGCGGGCTCAGATAGAGGAGTTAGATGAATAG

Protein sequence

>Msa1221330

MQRPPTDGASMGKRALEGGGDDDQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARLSGRSSPKRIEGPDGRNLRLQFRSRLALPLFTGGKVEGEQGAPIHVVLVDANSGSDFNNEDDEDWSQEEFESHVVKERQGKRPLLNGELQVTLKEGVGTLGELIFTDNSSWIRSRKFRLGMKVASGFGESIRILYKKHYPPALGDDVWRLEKIGKDGSFHKKLNNAGIFTVEDFLRLVVKDQQKLRNILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDTRNVGVIFNHVYELRGLITGEQFFSADSLSDNQKVYVDSLVKKAYDNWEQVVEYDGKSLVDAEQNNNTVESENELHVESIDYDGGFNNSMVTRYPSQALIGNSSSRSHFDDPLYLSNDHLLGNAHQSQSSRNDHSTVGLALGPPQSSTSGFHAASSSMQPPAPNPFDDWSNNRDKGVDDFFSEDEIRVRSNEILENEDMQHLLRLFSMGGHPSMNTEDGYSFPSFMPSPMPNFDEDRSRPGKAVVGWLKIKAAMRWGFFIRKIAAEKRAQIEELDE*