Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0698890 | 0.802553 | 5.311244e-49 | -8.615850e-47 |
| Msa0006110 | Msa0698890 | 0.810899 | 9.161712e-51 | -8.615850e-47 |
| Msa0037880 | Msa0698890 | 0.801882 | 7.301473e-49 | -8.615850e-47 |
| Msa0042550 | Msa0698890 | 0.826423 | 2.735475e-54 | -8.615850e-47 |
| Msa0050410 | Msa0698890 | 0.829715 | 4.407585e-55 | -8.615850e-47 |
| Msa0068740 | Msa0698890 | -0.810691 | 1.016223e-50 | -8.615850e-47 |
| Msa0071250 | Msa0698890 | 0.800688 | 1.281779e-48 | -8.615850e-47 |
| Msa0075470 | Msa0698890 | 0.801600 | 8.342511e-49 | -8.615850e-47 |
| Msa0084380 | Msa0698890 | 0.802438 | 5.609674e-49 | -8.615850e-47 |
| Msa0610130 | Msa0698890 | 0.810606 | 1.060003e-50 | -8.615850e-47 |
| Msa0613340 | Msa0698890 | 0.800016 | 1.756588e-48 | -8.615850e-47 |
| Msa0613440 | Msa0698890 | 0.803826 | 2.896742e-49 | -8.615850e-47 |
| Msa0615010 | Msa0698890 | 0.811840 | 5.725364e-51 | -8.615850e-47 |
| Msa0617640 | Msa0698890 | 0.808578 | 2.891157e-50 | -8.615850e-47 |
| Msa0622170 | Msa0698890 | -0.801955 | 7.053752e-49 | -8.615850e-47 |
| Msa0624470 | Msa0698890 | 0.804882 | 1.745121e-49 | -8.615850e-47 |
| Msa0653660 | Msa0698890 | 0.801011 | 1.101183e-48 | -8.615850e-47 |
| Msa0679290 | Msa0698890 | -0.803092 | 4.110595e-49 | -8.615850e-47 |
| Msa0689780 | Msa0698890 | 0.809753 | 1.618842e-50 | -8.615850e-47 |
| Msa0698890 | Msa0705990 | 0.810056 | 1.393171e-50 | -8.615850e-47 |
| Msa0698890 | Msa0711150 | 0.810894 | 9.183811e-51 | -8.615850e-47 |
| Msa0698890 | Msa0721340 | 0.803998 | 2.667642e-49 | -8.615850e-47 |
| Msa0698890 | Msa0731940 | 0.805164 | 1.523635e-49 | -8.615850e-47 |
| Msa0698890 | Msa0741070 | 0.801667 | 8.082820e-49 | -8.615850e-47 |
| Msa0698890 | Msa0749440 | 0.811343 | 7.340170e-51 | -8.615850e-47 |
| Msa0698890 | Msa0751850 | 0.822786 | 1.966275e-53 | -8.615850e-47 |
| Msa0698890 | Msa0760350 | 0.819434 | 1.164113e-52 | -8.615850e-47 |
| Msa0698890 | Msa0763890 | 0.801197 | 1.008638e-48 | -8.615850e-47 |
| Msa0698890 | Msa0763920 | 0.801952 | 7.062659e-49 | -8.615850e-47 |
| Msa0698890 | Msa0768370 | 0.804545 | 2.052485e-49 | -8.615850e-47 |
| Msa0698890 | Msa0797250 | 0.800485 | 1.409752e-48 | -8.615850e-47 |
| Msa0698890 | Msa0797770 | 0.809652 | 1.701888e-50 | -8.615850e-47 |
| Msa0698890 | Msa0801730 | 0.826054 | 3.348604e-54 | -8.615850e-47 |
| Msa0698890 | Msa0810220 | 0.812875 | 3.402135e-51 | -8.615850e-47 |
| Msa0698890 | Msa0817460 | 0.819526 | 1.108963e-52 | -8.615850e-47 |
| Msa0698890 | Msa0820850 | 0.838019 | 3.686421e-57 | -8.615850e-47 |
| Msa0698890 | Msa0830230 | 0.807457 | 5.006874e-50 | -8.615850e-47 |
| Msa0698890 | Msa0831850 | 0.822354 | 2.478045e-53 | -8.615850e-47 |
| Msa0698890 | Msa0832340 | 0.802760 | 4.814403e-49 | -8.615850e-47 |
| Msa0698890 | Msa0835230 | 0.813577 | 2.385428e-51 | -8.615850e-47 |
| Msa0698890 | Msa0842650 | 0.808182 | 3.511696e-50 | -8.615850e-47 |
| Msa0698890 | Msa0844110 | 0.805517 | 1.285058e-49 | -8.615850e-47 |
| Msa0698890 | Msa0844490 | 0.808673 | 2.759544e-50 | -8.615850e-47 |
| Msa0698890 | Msa0849030 | 0.807666 | 4.520810e-50 | -8.615850e-47 |
| Msa0698890 | Msa0853520 | 0.801565 | 8.478854e-49 | -8.615850e-47 |
| Msa0698890 | Msa0861130 | 0.836956 | 6.902679e-57 | -8.615850e-47 |
| Msa0698890 | Msa0866410 | 0.801227 | 9.947286e-49 | -8.615850e-47 |
| Msa0698890 | Msa0894710 | 0.810448 | 1.146822e-50 | -8.615850e-47 |
| Msa0698890 | Msa0902830 | 0.815143 | 1.075222e-51 | -8.615850e-47 |
| Msa0698890 | Msa0921420 | 0.809431 | 1.899141e-50 | -8.615850e-47 |
| Msa0698890 | Msa0924310 | 0.803502 | 3.381624e-49 | -8.615850e-47 |
| Msa0698890 | Msa0927380 | 0.819044 | 1.428102e-52 | -8.615850e-47 |
| Msa0698890 | Msa0928130 | 0.802290 | 6.017848e-49 | -8.615850e-47 |
| Msa0698890 | Msa0933100 | 0.802370 | 5.793646e-49 | -8.615850e-47 |
| Msa0698890 | Msa0936390 | 0.838835 | 2.271515e-57 | -8.615850e-47 |
| Msa0698890 | Msa0960390 | 0.828222 | 1.013376e-54 | -8.615850e-47 |
| Msa0698890 | Msa0962840 | 0.820040 | 8.463581e-53 | -8.615850e-47 |
| Msa0698890 | Msa0969520 | 0.819157 | 1.346034e-52 | -8.615850e-47 |
| Msa0698890 | Msa1001390 | 0.807460 | 4.999729e-50 | -8.615850e-47 |
| Msa0698890 | Msa1008750 | 0.810969 | 8.850345e-51 | -8.615850e-47 |
| Msa0698890 | Msa1023950 | 0.821618 | 3.668774e-53 | -8.615850e-47 |
| Msa0698890 | Msa1025080 | 0.809687 | 1.673032e-50 | -8.615850e-47 |
| Msa0698890 | Msa1028970 | 0.800428 | 1.448191e-48 | -8.615850e-47 |
| Msa0698890 | Msa1036610 | 0.806357 | 8.555004e-50 | -8.615850e-47 |
| Msa0698890 | Msa1039710 | -0.823070 | 1.688297e-53 | -8.615850e-47 |
| Msa0698890 | Msa1054150 | -0.809468 | 1.864056e-50 | -8.615850e-47 |
| Msa0698890 | Msa1063420 | 0.829908 | 3.955344e-55 | -8.615850e-47 |
| Msa0698890 | Msa1076960 | 0.817651 | 2.951880e-52 | -8.615850e-47 |
| Msa0698890 | Msa1081790 | -0.804603 | 1.995380e-49 | -8.615850e-47 |
| Msa0698890 | Msa1109090 | 0.811390 | 7.170886e-51 | -8.615850e-47 |
| Msa0698890 | Msa1109680 | 0.813170 | 2.931014e-51 | -8.615850e-47 |
| Msa0698890 | Msa1111870 | 0.808389 | 3.172407e-50 | -8.615850e-47 |
| Msa0698890 | Msa1115280 | 0.800175 | 1.630109e-48 | -8.615850e-47 |
| Msa0698890 | Msa1118610 | 0.801928 | 7.143326e-49 | -8.615850e-47 |
| Msa0698890 | Msa1121490 | 0.824215 | 9.107816e-54 | -8.615850e-47 |
| Msa0698890 | Msa1122860 | 0.807721 | 4.402372e-50 | -8.615850e-47 |
| Msa0698890 | Msa1137570 | 0.826843 | 2.171476e-54 | -8.615850e-47 |
| Msa0698890 | Msa1143020 | 0.823573 | 1.288236e-53 | -8.615850e-47 |
| Msa0698890 | Msa1144040 | 0.806185 | 9.300559e-50 | -8.615850e-47 |
| Msa0698890 | Msa1162780 | 0.809503 | 1.832377e-50 | -8.615850e-47 |
| Msa0698890 | Msa1168580 | 0.806573 | 7.702223e-50 | -8.615850e-47 |
| Msa0698890 | Msa1177780 | 0.812562 | 3.982470e-51 | -8.615850e-47 |
| Msa0698890 | Msa1181250 | 0.805265 | 1.451309e-49 | -8.615850e-47 |
| Msa0698890 | Msa1181330 | 0.804828 | 1.790901e-49 | -8.615850e-47 |
| Msa0698890 | Msa1200250 | 0.809234 | 2.092270e-50 | -8.615850e-47 |
| Msa0698890 | Msa1210020 | 0.822067 | 2.888615e-53 | -8.615850e-47 |
| Msa0698890 | Msa1210110 | 0.801469 | 8.873816e-49 | -8.615850e-47 |
| Msa0698890 | Msa1221330 | 0.809517 | 1.819877e-50 | -8.615850e-47 |
| Msa0698890 | Msa1224580 | -0.806434 | 8.240602e-50 | -8.615850e-47 |
| Msa0698890 | Msa1246360 | 0.804567 | 2.030193e-49 | -8.615850e-47 |
| Msa0698890 | Msa1270660 | 0.826362 | 2.828363e-54 | -8.615850e-47 |
| Msa0698890 | Msa1270730 | 0.806866 | 6.681130e-50 | -8.615850e-47 |
| Msa0698890 | Msa1282580 | -0.805948 | 1.043420e-49 | -8.615850e-47 |
| Msa0698890 | Msa1284680 | 0.800285 | 1.548098e-48 | -8.615850e-47 |
| Msa0698890 | Msa1298510 | 0.819503 | 1.122259e-52 | -8.615850e-47 |
| Msa0698890 | Msa1305810 | 0.801389 | 9.213470e-49 | -8.615850e-47 |
| Msa0698890 | Msa1308870 | 0.814489 | 1.500851e-51 | -8.615850e-47 |
| Msa0698890 | Msa1332050 | 0.804399 | 2.200488e-49 | -8.615850e-47 |
| Msa0698890 | Msa1348760 | 0.809160 | 2.170761e-50 | -8.615850e-47 |
| Msa0698890 | Msa1353470 | 0.810721 | 1.001452e-50 | -8.615850e-47 |
| Msa0698890 | Msa1355890 | 0.818521 | 1.877457e-52 | -8.615850e-47 |
| Msa0698890 | Msa1371940 | 0.805852 | 1.093060e-49 | -8.615850e-47 |
| Msa0698890 | Msa1372150 | 0.838177 | 3.357350e-57 | -8.615850e-47 |
| Msa0698890 | Msa1382790 | 0.804374 | 2.227675e-49 | -8.615850e-47 |
| Msa0698890 | Msa1394310 | 0.806573 | 7.703276e-50 | -8.615850e-47 |
| Msa0698890 | Msa1403340 | 0.813735 | 2.202573e-51 | -8.615850e-47 |
| Msa0698890 | Msa1404610 | 0.805635 | 1.213893e-49 | -8.615850e-47 |
| Msa0698890 | Msa1406110 | -0.813100 | 3.037019e-51 | -8.615850e-47 |
| Msa0698890 | Msa1407190 | 0.814867 | 1.237937e-51 | -8.615850e-47 |
| Msa0698890 | Msa1416370 | 0.800563 | 1.359179e-48 | -8.615850e-47 |
| Msa0698890 | Msa1420270 | 0.814003 | 1.921760e-51 | -8.615850e-47 |
| Msa0698890 | Msa1420820 | 0.800140 | 1.657345e-48 | -8.615850e-47 |
| Msa0698890 | Msa1421990 | 0.802015 | 6.856248e-49 | -8.615850e-47 |
| Msa0698890 | Msa1427230 | 0.813640 | 2.310978e-51 | -8.615850e-47 |
| Msa0698890 | Msa1428780 | 0.803537 | 3.325705e-49 | -8.615850e-47 |
| Msa0698890 | Msa1432130 | 0.810531 | 1.100464e-50 | -8.615850e-47 |
| Msa0698890 | Msa1445390 | -0.802988 | 4.319296e-49 | -8.615850e-47 |
| Msa0698890 | Msa1449340 | -0.808893 | 2.475343e-50 | -8.615850e-47 |
| Msa0698890 | Msa1460830 | 0.805676 | 1.189904e-49 | -8.615850e-47 |
| Msa0698890 | Msa1462360 | 0.809780 | 1.597379e-50 | -8.615850e-47 |
| Msa0698890 | Msa1466540 | 0.826812 | 2.209235e-54 | -8.615850e-47 |
| Msa0131770 | Msa0698890 | 0.807844 | 4.144647e-50 | -8.615850e-47 |
| Msa0138020 | Msa0698890 | 0.804575 | 2.022406e-49 | -8.615850e-47 |
| Msa0140500 | Msa0698890 | -0.805682 | 1.186371e-49 | -8.615850e-47 |
| Msa0173390 | Msa0698890 | 0.805474 | 1.311702e-49 | -8.615850e-47 |
| Msa0174390 | Msa0698890 | 0.808293 | 3.325041e-50 | -8.615850e-47 |
| Msa0178510 | Msa0698890 | 0.839887 | 1.210816e-57 | -8.615850e-47 |
| Msa0187250 | Msa0698890 | 0.813488 | 2.495245e-51 | -8.615850e-47 |
| Msa0187830 | Msa0698890 | 0.812741 | 3.639628e-51 | -8.615850e-47 |
| Msa0188150 | Msa0698890 | 0.805971 | 1.031779e-49 | -8.615850e-47 |
| Msa0207040 | Msa0698890 | -0.800536 | 1.376296e-48 | -8.615850e-47 |
| Msa0223010 | Msa0698890 | 0.801576 | 8.437061e-49 | -8.615850e-47 |
| Msa0229380 | Msa0698890 | 0.815724 | 7.983024e-52 | -8.615850e-47 |
| Msa0367870 | Msa0698890 | 0.801526 | 8.636442e-49 | -8.615850e-47 |
| Msa0371950 | Msa0698890 | 0.802525 | 5.381971e-49 | -8.615850e-47 |
| Msa0381610 | Msa0698890 | -0.812013 | 5.249219e-51 | -8.615850e-47 |
| Msa0393620 | Msa0698890 | 0.834211 | 3.417446e-56 | -8.615850e-47 |
| Msa0394470 | Msa0698890 | 0.805544 | 1.268454e-49 | -8.615850e-47 |
| Msa0398200 | Msa0698890 | 0.817915 | 2.573456e-52 | -8.615850e-47 |
| Msa0412840 | Msa0698890 | 0.809338 | 1.988398e-50 | -8.615850e-47 |
| Msa0417330 | Msa0698890 | 0.825130 | 5.542755e-54 | -8.615850e-47 |
| Msa0422180 | Msa0698890 | 0.819858 | 9.310621e-53 | -8.615850e-47 |
| Msa0426900 | Msa0698890 | 0.812781 | 3.567351e-51 | -8.615850e-47 |
| Msa0430920 | Msa0698890 | 0.800394 | 1.470984e-48 | -8.615850e-47 |
| Msa0434180 | Msa0698890 | 0.803235 | 3.839958e-49 | -8.615850e-47 |
| Msa0455760 | Msa0698890 | 0.812558 | 3.990500e-51 | -8.615850e-47 |
| Msa0457510 | Msa0698890 | 0.805390 | 1.366113e-49 | -8.615850e-47 |
| Msa0468320 | Msa0698890 | 0.804995 | 1.652452e-49 | -8.615850e-47 |
| Msa0481280 | Msa0698890 | 0.802479 | 5.502534e-49 | -8.615850e-47 |
| Msa0241140 | Msa0698890 | 0.829998 | 3.761032e-55 | -8.615850e-47 |
| Msa0303150 | Msa0698890 | 0.802615 | 5.157794e-49 | -8.615850e-47 |
| Msa0305610 | Msa0698890 | 0.802948 | 4.402323e-49 | -8.615850e-47 |
| Msa0306210 | Msa0698890 | -0.803508 | 3.370877e-49 | -8.615850e-47 |
| Msa0307310 | Msa0698890 | 0.805771 | 1.136204e-49 | -8.615850e-47 |
| Msa0319170 | Msa0698890 | 0.844237 | 8.562407e-59 | -8.615850e-47 |
| Msa0326110 | Msa0698890 | 0.805106 | 1.566659e-49 | -8.615850e-47 |
| Msa0363790 | Msa0698890 | 0.801769 | 7.700001e-49 | -8.615850e-47 |
| Msa0485490 | Msa0698890 | 0.804151 | 2.478718e-49 | -8.615850e-47 |
| Msa0518380 | Msa0698890 | 0.810629 | 1.048430e-50 | -8.615850e-47 |
| Msa0521010 | Msa0698890 | 0.800609 | 1.330029e-48 | -8.615850e-47 |
| Msa0521670 | Msa0698890 | 0.822516 | 2.271495e-53 | -8.615850e-47 |
| Msa0521740 | Msa0698890 | 0.814808 | 1.275743e-51 | -8.615850e-47 |
| Msa0526070 | Msa0698890 | -0.801949 | 7.071577e-49 | -8.615850e-47 |
| Msa0545700 | Msa0698890 | 0.809027 | 2.318251e-50 | -8.615850e-47 |
| Msa0548920 | Msa0698890 | 0.801868 | 7.348878e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTAAGTTTCTTTGATTT+TGG | 0.145559 | 4_4:+69339338 | Msa0698890:three_prime_UTR |
| AGATTGAAGGTGGTCGTATT+AGG | 0.222968 | 4_4:+69336006 | Msa0698890:CDS |
| AGGATGCTACCGATATTATT+TGG | 0.258812 | 4_4:+69336426 | Msa0698890:CDS |
| CTGACGGTATAATCTCTATT+TGG | 0.301468 | 4_4:-69336359 | None:intergenic |
| GTCTTTCATGCAGATGTTCA+AGG | 0.304301 | 4_4:+69338243 | Msa0698890:intron |
| TCATAAGATTGCTACCTTCA+TGG | 0.326331 | 4_4:+69339309 | Msa0698890:three_prime_UTR |
| GATTGAAGGTGGTCGTATTA+GGG | 0.360768 | 4_4:+69336007 | Msa0698890:CDS |
| TGAGACTATGAATATATCTT+TGG | 0.361174 | 4_4:+69339256 | Msa0698890:three_prime_UTR |
| AGTAGACACTAAAGTATCTA+TGG | 0.364563 | 4_4:+69339179 | Msa0698890:three_prime_UTR |
| GGTCGTATTAGGGAGGTAAA+AGG | 0.384230 | 4_4:+69336017 | Msa0698890:CDS |
| TGGTAGTGGTGTTGGTTTGT+TGG | 0.387927 | 4_4:+69339404 | Msa0698890:three_prime_UTR |
| AGAAGAAACTATGGTGCAAT+AGG | 0.392447 | 4_4:-69338277 | None:intergenic |
| TGATTTGTTCCAAATAATAT+CGG | 0.395528 | 4_4:-69336435 | None:intergenic |
| GTGTTGGTTTGTTGGTAGAT+AGG | 0.397577 | 4_4:+69339412 | Msa0698890:three_prime_UTR |
| GGTTTCGATAGAAGAAACTA+TGG | 0.427046 | 4_4:-69338286 | None:intergenic |
| CTCATCTGTGGGTCATGTAT+AGG | 0.434456 | 4_4:+69339364 | Msa0698890:three_prime_UTR |
| TGAAGGTTCGTATGAAAGGT+AGG | 0.449213 | 4_4:+69336318 | Msa0698890:intron |
| TGTTGGTTTGTTGGTAGATA+GGG | 0.453460 | 4_4:+69339413 | Msa0698890:three_prime_UTR |
| GTAAAAGGTTATGATCAATA+TGG | 0.465026 | 4_4:+69336032 | Msa0698890:CDS |
| AGGATGATTTGAGATCAAAT+TGG | 0.474472 | 4_4:+69339384 | Msa0698890:three_prime_UTR |
| ATGGCTATGTATAAGATTGA+AGG | 0.474982 | 4_4:+69335993 | Msa0698890:CDS |
| ACATGGTGATGAGTTATTAG+AGG | 0.482109 | 4_4:+69334622 | Msa0698890:CDS |
| TTATTATATGTTGACTTCGA+TGG | 0.488546 | 4_4:+69336388 | Msa0698890:CDS |
| TGATGAGTTATTAGAGGTTG+AGG | 0.489842 | 4_4:+69334628 | Msa0698890:CDS |
| CGTTGTTAGAAAAGCGATGT+TGG | 0.493763 | 4_4:+69335928 | Msa0698890:CDS |
| GATGGAGTCGGTTGCTCGAG+AGG | 0.517975 | 4_4:+69336406 | Msa0698890:CDS |
| TTGTGGAACAAAAGAGTTTG+TGG | 0.518785 | 4_4:+69335958 | Msa0698890:CDS |
| GTATGAAAGGTAGGTGGAGA+TGG | 0.519096 | 4_4:+69336327 | Msa0698890:CDS |
| GATCAAATTGGTAGTGGTGT+TGG | 0.528161 | 4_4:+69339396 | Msa0698890:three_prime_UTR |
| GTTGAGGATATGTTCTATGT+TGG | 0.539739 | 4_4:+69334644 | Msa0698890:CDS |
| TATGTTGACTTCGATGGAGT+CGG | 0.544563 | 4_4:+69336394 | Msa0698890:CDS |
| AATCATAAAGTTGTGATACA+AGG | 0.565149 | 4_4:+69339222 | Msa0698890:three_prime_UTR |
| CTTAGAAGTCAATTCCATGA+AGG | 0.565460 | 4_4:-69339323 | None:intergenic |
| TGTTAGAAAAGCGATGTTGG+AGG | 0.570005 | 4_4:+69335931 | Msa0698890:CDS |
| ATCAATATGGTCGAAGCACA+CGG | 0.581010 | 4_4:+69336045 | Msa0698890:CDS |
| ATTTGAGATCAAATTGGTAG+TGG | 0.583057 | 4_4:+69339390 | Msa0698890:three_prime_UTR |
| GCGATGTTGGAGGATGTTTG+TGG | 0.589227 | 4_4:+69335941 | Msa0698890:CDS |
| CATATAATAAACACCACTGA+CGG | 0.591912 | 4_4:-69336375 | None:intergenic |
| AGTTTCTTCTATCGAAACCA+AGG | 0.603184 | 4_4:+69338290 | Msa0698890:exon |
| GTTTCTTCTATCGAAACCAA+GGG | 0.605202 | 4_4:+69338291 | Msa0698890:exon |
| TGAAGGTGGTCGTATTAGGG+AGG | 0.607056 | 4_4:+69336010 | Msa0698890:CDS |
| CAAGCAAAGCAAATGCGACA+TGG | 0.610183 | 4_4:+69334605 | Msa0698890:CDS |
| AATAGAGATTATACCGTCAG+TGG | 0.619129 | 4_4:+69336362 | Msa0698890:CDS |
| CACACGGTGGTTATTCGTAG+AGG | 0.631242 | 4_4:+69336061 | Msa0698890:CDS |
| GCTATGTATAAGATTGAAGG+TGG | 0.649826 | 4_4:+69335996 | Msa0698890:CDS |
| AGGTTCGTATGAAAGGTAGG+TGG | 0.667817 | 4_4:+69336321 | Msa0698890:intron |
| AATATGGTCGAAGCACACGG+TGG | 0.800762 | 4_4:+69336048 | Msa0698890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTAATTTTTTTTTTT+TGG | + | chr4_4:69338686-69338705 | Msa0698890:intron | 0.0% |
| !!! | TTTTTATTTATTTATTTGAG+GGG | - | chr4_4:69335196-69335215 | None:intergenic | 10.0% |
| !!! | CTTTTTTATTTATTTATTTG+AGG | - | chr4_4:69335198-69335217 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAAATTCAAGTT+CGG | + | chr4_4:69335245-69335264 | Msa0698890:intron | 10.0% |
| !!! | AAAATTGTAAATTTTCAAAT+AGG | + | chr4_4:69335589-69335608 | Msa0698890:intron | 10.0% |
| !! | AAAAAAATTGTATAAATAAG+AGG | + | chr4_4:69335758-69335777 | Msa0698890:intron | 10.0% |
| !!! | CATATATTAACATTTTTTTT+TGG | - | chr4_4:69336600-69336619 | None:intergenic | 10.0% |
| !! | AGATGATTATAAATATGATA+AGG | + | chr4_4:69334722-69334741 | Msa0698890:intron | 15.0% |
| !!! | TTACGTTATTTTTATTTACA+TGG | - | chr4_4:69334878-69334897 | None:intergenic | 15.0% |
| !! | ATTTAATAAATCAATCATCA+AGG | + | chr4_4:69335140-69335159 | Msa0698890:intron | 15.0% |
| !!! | AAAAAAAAAAATTCAAGTTC+GGG | + | chr4_4:69335246-69335265 | Msa0698890:intron | 15.0% |
| !!! | TAATTTTTTCTAGAGTAAAT+AGG | - | chr4_4:69335458-69335477 | None:intergenic | 15.0% |
| !! | TTTATAACTAAGTGAAAAAA+CGG | - | chr4_4:69337003-69337022 | None:intergenic | 15.0% |
| !! | TAAGTGAGTTAATAATTAAT+AGG | + | chr4_4:69337480-69337499 | Msa0698890:intron | 15.0% |
| !! | TTTGAAAATCAAAATAGAAA+AGG | - | chr4_4:69337717-69337736 | None:intergenic | 15.0% |
| !! | TAACAGAAACATAATTTAAA+AGG | - | chr4_4:69337950-69337969 | None:intergenic | 15.0% |
| !!! | ATTCATCATTTTTATTGAAT+AGG | + | chr4_4:69338040-69338059 | Msa0698890:intron | 15.0% |
| !!! | AAAATTTTAATTGTAGGATA+TGG | - | chr4_4:69338203-69338222 | None:intergenic | 15.0% |
| !!! | AATTGCAGTTATATATATTT+TGG | + | chr4_4:69338749-69338768 | Msa0698890:intron | 15.0% |
| !!! | CTAGTTTTCAAATTCAAAAA+GGG | - | chr4_4:69334908-69334927 | None:intergenic | 20.0% |
| !!! | AAAAAAAAAATTCAAGTTCG+GGG | + | chr4_4:69335247-69335266 | Msa0698890:intron | 20.0% |
| !!! | ATTGAAGTTTTGTTAATTTG+AGG | + | chr4_4:69335391-69335410 | Msa0698890:intron | 20.0% |
| !!! | TTGAAGTTTTGTTAATTTGA+GGG | + | chr4_4:69335392-69335411 | Msa0698890:intron | 20.0% |
| !! | AAATATGATCAAAGTAAGTT+AGG | + | chr4_4:69335564-69335583 | Msa0698890:intron | 20.0% |
| !! | TCAACAAATGTTAATGTATT+TGG | - | chr4_4:69335692-69335711 | None:intergenic | 20.0% |
| !! | AGAATGTTAGGAAAATTTAT+TGG | + | chr4_4:69335829-69335848 | Msa0698890:intron | 20.0% |
| !! | GAATGTTAGGAAAATTTATT+GGG | + | chr4_4:69335830-69335849 | Msa0698890:intron | 20.0% |
| !!! | TGATTTGTTCCAAATAATAT+CGG | - | chr4_4:69336438-69336457 | None:intergenic | 20.0% |
| !!! | ATAGATAATTTGTTTTTGCT+AGG | - | chr4_4:69336485-69336504 | None:intergenic | 20.0% |
| !! | AATGTTAATATATGTGTCAT+CGG | + | chr4_4:69336606-69336625 | Msa0698890:intron | 20.0% |
| !!! | TCAAAAGTTTATCATTTTGA+TGG | + | chr4_4:69336909-69336928 | Msa0698890:intron | 20.0% |
| !! | AGTGACTAAAGTATATAAAA+AGG | + | chr4_4:69337333-69337352 | Msa0698890:intron | 20.0% |
| !! | TCAATTGAAAAAGTCAAAAA+GGG | - | chr4_4:69337520-69337539 | None:intergenic | 20.0% |
| !! | ATCAATTGAAAAAGTCAAAA+AGG | - | chr4_4:69337521-69337540 | None:intergenic | 20.0% |
| !! | TGAATTATATACACAAAAGA+AGG | - | chr4_4:69337750-69337769 | None:intergenic | 20.0% |
| !!! | TTTTTATTGAATAGGATATG+AGG | + | chr4_4:69338048-69338067 | Msa0698890:intron | 20.0% |
| !!! | TCAAATCCTTTTGAAAAATT+AGG | + | chr4_4:69338084-69338103 | Msa0698890:intron | 20.0% |
| !!! | TAGTTTCCTAATTTTTCAAA+AGG | - | chr4_4:69338093-69338112 | None:intergenic | 20.0% |
| !! | AAAATTAGGAAACTATTGAA+AGG | + | chr4_4:69338098-69338117 | Msa0698890:intron | 20.0% |
| !!! | GATTTTATGCAAGTTATATT+TGG | + | chr4_4:69338396-69338415 | Msa0698890:intron | 20.0% |
| !!! | ATTTTATTCCATTGATTCTT+TGG | + | chr4_4:69338790-69338809 | Msa0698890:intron | 20.0% |
| !! | AAATAAAACCAAAGAATCAA+TGG | - | chr4_4:69338801-69338820 | None:intergenic | 20.0% |
| !!! | TTGATTCTTTGGTTTTATTT+TGG | + | chr4_4:69338801-69338820 | Msa0698890:intron | 20.0% |
| !!! | TAATTTTATGACATGTTTGT+AGG | + | chr4_4:69339129-69339148 | Msa0698890:intron | 20.0% |
| ! | AATGAGATTATGAGTATGAT+TGG | + | chr4_4:69334747-69334766 | Msa0698890:intron | 25.0% |
| !!! | ATTTTTATTTACATGGTGAG+AGG | - | chr4_4:69334871-69334890 | None:intergenic | 25.0% |
| !!! | GCTAGTTTTCAAATTCAAAA+AGG | - | chr4_4:69334909-69334928 | None:intergenic | 25.0% |
| ! | TGAAAATAGGAACTAATTTG+AGG | - | chr4_4:69335097-69335116 | None:intergenic | 25.0% |
| !!! | ATTAGTTCCTATTTTCAAGA+TGG | + | chr4_4:69335100-69335119 | Msa0698890:intron | 25.0% |
| ! | TTATTTATTTGAGGGGAAAT+AGG | - | chr4_4:69335189-69335208 | None:intergenic | 25.0% |
| !! | AAAAAAAAATTCAAGTTCGG+GGG | + | chr4_4:69335248-69335267 | Msa0698890:intron | 25.0% |
| ! | TCACTAACAGAAAAATTTGA+CGG | + | chr4_4:69335327-69335346 | Msa0698890:intron | 25.0% |
| !!! | TGAAGTTTTGTTAATTTGAG+GGG | + | chr4_4:69335393-69335412 | Msa0698890:intron | 25.0% |
| !! | ACGAAACTTACAATTTTAGA+GGG | + | chr4_4:69335424-69335443 | Msa0698890:intron | 25.0% |
| ! | TTCAAATAGGTCATCTATTA+CGG | + | chr4_4:69335602-69335621 | Msa0698890:intron | 25.0% |
| !! | AAGGAGTATAAGAAACATTT+AGG | + | chr4_4:69335630-69335649 | Msa0698890:intron | 25.0% |
| ! | ATGTCTCTTATAGATAAGAT+CGG | + | chr4_4:69335717-69335736 | Msa0698890:intron | 25.0% |
| !!! | TATGTCTTGATGCTTTTTTT+TGG | + | chr4_4:69335796-69335815 | Msa0698890:intron | 25.0% |
| ! | GTAAAAGGTTATGATCAATA+TGG | + | chr4_4:69336032-69336051 | Msa0698890:CDS | 25.0% |
| !!! | TTATTATATGTTGACTTCGA+TGG | + | chr4_4:69336388-69336407 | Msa0698890:CDS | 25.0% |
| ! | TTTGACGATTATTACGTAAT+TGG | + | chr4_4:69336508-69336527 | Msa0698890:intron | 25.0% |
| !! | AAATGTTGATCATCTGTTTT+TGG | + | chr4_4:69336644-69336663 | Msa0698890:intron | 25.0% |
| !!! | AATGTTGATCATCTGTTTTT+GGG | + | chr4_4:69336645-69336664 | Msa0698890:intron | 25.0% |
| !!! | TATTTAGTTAGTTTGTGTGT+TGG | + | chr4_4:69336812-69336831 | Msa0698890:intron | 25.0% |
| !!! | ATTTAGTTAGTTTGTGTGTT+GGG | + | chr4_4:69336813-69336832 | Msa0698890:intron | 25.0% |
| !!! | TTTATCATTTTGATGGTTGA+AGG | + | chr4_4:69336916-69336935 | Msa0698890:intron | 25.0% |
| !!! | TAGTTTTTTATCTTCGTCTT+TGG | + | chr4_4:69336954-69336973 | Msa0698890:intron | 25.0% |
| ! | AAAAAACGGAAACACATAAT+AGG | - | chr4_4:69336989-69337008 | None:intergenic | 25.0% |
| ! | CAAAACAAACAAATGAGTTA+TGG | - | chr4_4:69337032-69337051 | None:intergenic | 25.0% |
| ! | AATGCAATGATAGAAATCAA+TGG | - | chr4_4:69337077-69337096 | None:intergenic | 25.0% |
| ! | TGAGTTTATCTCAATTAGTA+AGG | + | chr4_4:69337283-69337302 | Msa0698890:intron | 25.0% |
| ! | ACTATATTATGTATGAGTCA+AGG | + | chr4_4:69337308-69337327 | Msa0698890:intron | 25.0% |
| ! | AATAGAAAAGGATTACAAAG+AGG | - | chr4_4:69337705-69337724 | None:intergenic | 25.0% |
| ! | TTCTATATTCATGTGATTGT+GGG | - | chr4_4:69337774-69337793 | None:intergenic | 25.0% |
| ! | ATTCTATATTCATGTGATTG+TGG | - | chr4_4:69337775-69337794 | None:intergenic | 25.0% |
| ! | CAATCACATGAATATAGAAT+TGG | + | chr4_4:69337775-69337794 | Msa0698890:intron | 25.0% |
| ! | ACATGAATATAGAATTGGAA+GGG | + | chr4_4:69337780-69337799 | Msa0698890:intron | 25.0% |
| ! | ATTCAAATTGAAGCTTGTAT+AGG | - | chr4_4:69337809-69337828 | None:intergenic | 25.0% |
| ! | CCACTAAATTAGAAAAGAAA+TGG | - | chr4_4:69338129-69338148 | None:intergenic | 25.0% |
| !! | CCATTTCTTTTCTAATTTAG+TGG | + | chr4_4:69338126-69338145 | Msa0698890:intron | 25.0% |
| ! | TAAACCTAAAACAGTAAGTA+TGG | + | chr4_4:69338318-69338337 | Msa0698890:intron | 25.0% |
| !!! | AGTATTTGCTCTTTTTGAAA+CGG | - | chr4_4:69338427-69338446 | None:intergenic | 25.0% |
| ! | GAAAGAAACAAATTCTACAA+TGG | - | chr4_4:69338541-69338560 | None:intergenic | 25.0% |
| ! | TATATACCTTCAATTTGTGT+TGG | - | chr4_4:69338857-69338876 | None:intergenic | 25.0% |
| ! | AATAACAACAACATAGTATG+AGG | - | chr4_4:69338931-69338950 | None:intergenic | 25.0% |
| ! | TCTCACATTAAAACAGAAAT+GGG | + | chr4_4:69338979-69338998 | Msa0698890:intron | 25.0% |
| !!! | TTAGAATATAGTCTAGCTTT+TGG | + | chr4_4:69339033-69339052 | Msa0698890:intron | 25.0% |
| ! | ACATGTCATAAAATTAGTGT+TGG | - | chr4_4:69339125-69339144 | None:intergenic | 25.0% |
| ! | AATCATAAAGTTGTGATACA+AGG | + | chr4_4:69339222-69339241 | Msa0698890:three_prime_UTR | 25.0% |
| ! | TGAGACTATGAATATATCTT+TGG | + | chr4_4:69339256-69339275 | Msa0698890:three_prime_UTR | 25.0% |
| !!! | CTTCTAAGTTTCTTTGATTT+TGG | + | chr4_4:69339338-69339357 | Msa0698890:three_prime_UTR | 25.0% |
| AGATTATGAGTATGATTGGA+GGG | + | chr4_4:69334751-69334770 | Msa0698890:intron | 30.0% | |
| ! | AACTCACACATGAGTATTTT+CGG | + | chr4_4:69335002-69335021 | Msa0698890:intron | 30.0% |
| GAAGATACCATCTTGAAAAT+AGG | - | chr4_4:69335110-69335129 | None:intergenic | 30.0% | |
| TAACAGAAAAATTTGACGGA+GGG | + | chr4_4:69335331-69335350 | Msa0698890:intron | 30.0% | |
| ATTAACGTTGTGCAATTTCA+GGG | + | chr4_4:69335363-69335382 | Msa0698890:intron | 30.0% | |
| !!! | GAAGTTTTGTTAATTTGAGG+GGG | + | chr4_4:69335394-69335413 | Msa0698890:intron | 30.0% |
| !!! | AAGTTTTGTTAATTTGAGGG+GGG | + | chr4_4:69335395-69335414 | Msa0698890:intron | 30.0% |
| ! | GACGAAACTTACAATTTTAG+AGG | + | chr4_4:69335423-69335442 | Msa0698890:intron | 30.0% |
| !! | CGAAACTTACAATTTTAGAG+GGG | + | chr4_4:69335425-69335444 | Msa0698890:intron | 30.0% |
| !! | GAAACTTACAATTTTAGAGG+GGG | + | chr4_4:69335426-69335445 | Msa0698890:intron | 30.0% |
| TCAAATAGGTCATCTATTAC+GGG | + | chr4_4:69335603-69335622 | Msa0698890:intron | 30.0% | |
| GAAACATTTAGGTCAACAAA+AGG | + | chr4_4:69335641-69335660 | Msa0698890:intron | 30.0% | |
| !! | GGAAAATTTATTGGGTTGAT+TGG | + | chr4_4:69335838-69335857 | Msa0698890:intron | 30.0% |
| ! | ATTAGTTTGGATAACGAGAA+TGG | + | chr4_4:69335867-69335886 | Msa0698890:intron | 30.0% |
| ! | TTTGTGGTACAAGCTTTTAA+TGG | + | chr4_4:69335974-69335993 | Msa0698890:CDS | 30.0% |
| ATGGCTATGTATAAGATTGA+AGG | + | chr4_4:69335993-69336012 | Msa0698890:CDS | 30.0% | |
| ! | GTTTGATGACAATTTGCATA+GGG | + | chr4_4:69336108-69336127 | Msa0698890:intron | 30.0% |
| ! | AACTGACAACAAACGATTTT+CGG | - | chr4_4:69336215-69336234 | None:intergenic | 30.0% |
| !!! | GTTAAATGGCATTGTTTTGA+AGG | + | chr4_4:69336301-69336320 | Msa0698890:intron | 30.0% |
| CATATAATAAACACCACTGA+CGG | - | chr4_4:69336378-69336397 | None:intergenic | 30.0% | |
| !!! | ACGACTTTTTTGAGACTATT+TGG | + | chr4_4:69336670-69336689 | Msa0698890:intron | 30.0% |
| !!! | CGACTTTTTTGAGACTATTT+GGG | + | chr4_4:69336671-69336690 | Msa0698890:intron | 30.0% |
| !!! | GACTTTTTTGAGACTATTTG+GGG | + | chr4_4:69336672-69336691 | Msa0698890:intron | 30.0% |
| !!! | CACATTTTTTCAGTGAAAGA+AGG | + | chr4_4:69336859-69336878 | Msa0698890:intron | 30.0% |
| !!! | TTTTTTATCTTCGTCTTTGG+TGG | + | chr4_4:69336957-69336976 | Msa0698890:intron | 30.0% |
| !!! | TTTTTTTGAAGAAGTGTGCT+CGG | + | chr4_4:69337122-69337141 | Msa0698890:intron | 30.0% |
| AATTGATTGTACAATCCACA+AGG | + | chr4_4:69337534-69337553 | Msa0698890:intron | 30.0% | |
| ATTGATTGTACAATCCACAA+GGG | + | chr4_4:69337535-69337554 | Msa0698890:intron | 30.0% | |
| CAACGTGAAAACATATTGAT+AGG | - | chr4_4:69337610-69337629 | None:intergenic | 30.0% | |
| !!! | GAGGAGAAAAATTTTAGTTC+TGG | - | chr4_4:69337683-69337702 | None:intergenic | 30.0% |
| CACATGAATATAGAATTGGA+AGG | + | chr4_4:69337779-69337798 | Msa0698890:intron | 30.0% | |
| AAGAAAGCTTCAAACATGTT+TGG | - | chr4_4:69337904-69337923 | None:intergenic | 30.0% | |
| !! | CATGTTTGAAGCTTTCTTTT+TGG | + | chr4_4:69337906-69337925 | Msa0698890:intron | 30.0% |
| ! | TACACCATACTTACTGTTTT+AGG | - | chr4_4:69338325-69338344 | None:intergenic | 30.0% |
| AGCATATCAAACTCATTACA+TGG | - | chr4_4:69338480-69338499 | None:intergenic | 30.0% | |
| !!! | CATTTCTGTTTTAATGTGAG+AGG | - | chr4_4:69338980-69338999 | None:intergenic | 30.0% |
| CTCTCACATTAAAACAGAAA+TGG | + | chr4_4:69338978-69338997 | Msa0698890:intron | 30.0% | |
| TTTATGACATGTTTGTAGGA+AGG | + | chr4_4:69339133-69339152 | Msa0698890:intron | 30.0% | |
| ! | AGTAGACACTAAAGTATCTA+TGG | + | chr4_4:69339179-69339198 | Msa0698890:three_prime_UTR | 30.0% |
| ! | AGGATGATTTGAGATCAAAT+TGG | + | chr4_4:69339384-69339403 | Msa0698890:three_prime_UTR | 30.0% |
| ! | ATTTGAGATCAAATTGGTAG+TGG | + | chr4_4:69339390-69339409 | Msa0698890:three_prime_UTR | 30.0% |
| ! | ACATGGTGATGAGTTATTAG+AGG | + | chr4_4:69334622-69334641 | Msa0698890:CDS | 35.0% |
| TGATGAGTTATTAGAGGTTG+AGG | + | chr4_4:69334628-69334647 | Msa0698890:CDS | 35.0% | |
| GTTGAGGATATGTTCTATGT+TGG | + | chr4_4:69334644-69334663 | Msa0698890:CDS | 35.0% | |
| GAGATTATGAGTATGATTGG+AGG | + | chr4_4:69334750-69334769 | Msa0698890:intron | 35.0% | |
| TGTGTTTGGTCTCTTAACAT+TGG | + | chr4_4:69334792-69334811 | Msa0698890:intron | 35.0% | |
| !! | GTTGTGCTTGCTATATATGT+GGG | - | chr4_4:69334849-69334868 | None:intergenic | 35.0% |
| ! | GAGTATTTTCGGATTTCAGT+TGG | + | chr4_4:69335013-69335032 | Msa0698890:intron | 35.0% |
| CACATAAGTGCAAAACTTCA+GGG | + | chr4_4:69335279-69335298 | Msa0698890:intron | 35.0% | |
| ACATAAGTGCAAAACTTCAG+GGG | + | chr4_4:69335280-69335299 | Msa0698890:intron | 35.0% | |
| CTAACAGAAAAATTTGACGG+AGG | + | chr4_4:69335330-69335349 | Msa0698890:intron | 35.0% | |
| AACAGAAAAATTTGACGGAG+GGG | + | chr4_4:69335332-69335351 | Msa0698890:intron | 35.0% | |
| GATTAACGTTGTGCAATTTC+AGG | + | chr4_4:69335362-69335381 | Msa0698890:intron | 35.0% | |
| TTAACGTTGTGCAATTTCAG+GGG | + | chr4_4:69335364-69335383 | Msa0698890:intron | 35.0% | |
| AAAGGTGATGTCTCTAGTTA+AGG | + | chr4_4:69335659-69335678 | Msa0698890:intron | 35.0% | |
| GATGTCTCTAGTTAAGGATT+TGG | + | chr4_4:69335665-69335684 | Msa0698890:intron | 35.0% | |
| TCTCTTATAGATAAGATCGG+AGG | + | chr4_4:69335720-69335739 | Msa0698890:intron | 35.0% | |
| !!! | GTCTTGATGCTTTTTTTTGG+AGG | + | chr4_4:69335799-69335818 | Msa0698890:intron | 35.0% |
| ! | TGATTGGAACACGATTAGTT+TGG | + | chr4_4:69335854-69335873 | Msa0698890:intron | 35.0% |
| ! | AATGGAGTGCTAAGAATTAG+TGG | + | chr4_4:69335885-69335904 | Msa0698890:intron | 35.0% |
| TTGTGGAACAAAAGAGTTTG+TGG | + | chr4_4:69335958-69335977 | Msa0698890:CDS | 35.0% | |
| GCTATGTATAAGATTGAAGG+TGG | + | chr4_4:69335996-69336015 | Msa0698890:CDS | 35.0% | |
| ! | GGTTTGATGACAATTTGCAT+AGG | + | chr4_4:69336107-69336126 | Msa0698890:intron | 35.0% |
| !!! | ATTTTTTTGTGCTTGATGCG+TGG | + | chr4_4:69336141-69336160 | Msa0698890:intron | 35.0% |
| CGTCTAAACCTATTACACAT+AGG | - | chr4_4:69336178-69336197 | None:intergenic | 35.0% | |
| !!! | GTTTTGAAGGTTCGTATGAA+AGG | + | chr4_4:69336314-69336333 | Msa0698890:intron | 35.0% |
| CTGACGGTATAATCTCTATT+TGG | - | chr4_4:69336362-69336381 | None:intergenic | 35.0% | |
| AATAGAGATTATACCGTCAG+TGG | + | chr4_4:69336362-69336381 | Msa0698890:CDS | 35.0% | |
| AGGATGCTACCGATATTATT+TGG | + | chr4_4:69336426-69336445 | Msa0698890:CDS | 35.0% | |
| ACGTAATTGGATCTCTACAA+TGG | + | chr4_4:69336521-69336540 | Msa0698890:intron | 35.0% | |
| ATATATGTGTCATCGGATGT+TGG | + | chr4_4:69336613-69336632 | Msa0698890:intron | 35.0% | |
| CTGAATAACCAAATTGCACA+AGG | - | chr4_4:69336755-69336774 | None:intergenic | 35.0% | |
| CTTGTGCAATTTGGTTATTC+AGG | + | chr4_4:69336753-69336772 | Msa0698890:intron | 35.0% | |
| GCTCGGTATAATTCTTTGTT+TGG | + | chr4_4:69337139-69337158 | Msa0698890:intron | 35.0% | |
| GCAGTCTGATAAGCAAATTA+TGG | + | chr4_4:69337410-69337429 | Msa0698890:intron | 35.0% | |
| ACGTTGCTCAAAAATTAGTC+TGG | + | chr4_4:69337624-69337643 | Msa0698890:intron | 35.0% | |
| AGAAAAGGATTACAAAGAGG+AGG | - | chr4_4:69337702-69337721 | None:intergenic | 35.0% | |
| ! | TTTGATCAGCATGAGTTTTG+AGG | + | chr4_4:69337863-69337882 | Msa0698890:intron | 35.0% |
| !! | TTCTTTTTGGTAGCCATTCT+CGG | + | chr4_4:69337919-69337938 | Msa0698890:intron | 35.0% |
| AGAAGAAACTATGGTGCAAT+AGG | - | chr4_4:69338280-69338299 | None:intergenic | 35.0% | |
| GGTTTCGATAGAAGAAACTA+TGG | - | chr4_4:69338289-69338308 | None:intergenic | 35.0% | |
| AGTTTCTTCTATCGAAACCA+AGG | + | chr4_4:69338290-69338309 | Msa0698890:exon | 35.0% | |
| GTTTCTTCTATCGAAACCAA+GGG | + | chr4_4:69338291-69338310 | Msa0698890:exon | 35.0% | |
| !!! | GTTTTAGGTTTACTTTCCCT+TGG | - | chr4_4:69338310-69338329 | None:intergenic | 35.0% |
| CAAAACAAATCGTCTAGATG+CGG | - | chr4_4:69338354-69338373 | None:intergenic | 35.0% | |
| ! | GCTTGCTTAGATGTTTCTTT+TGG | + | chr4_4:69338497-69338516 | Msa0698890:intron | 35.0% |
| TTGTTGCCAACACAAATTGA+AGG | + | chr4_4:69338848-69338867 | Msa0698890:intron | 35.0% | |
| ! | TTAATGTGAGAGGTATGAGA+TGG | - | chr4_4:69338970-69338989 | None:intergenic | 35.0% |
| TCTGAGTGTTTGAATTGTGT+AGG | - | chr4_4:69339071-69339090 | None:intergenic | 35.0% | |
| TCATAAGATTGCTACCTTCA+TGG | + | chr4_4:69339309-69339328 | Msa0698890:three_prime_UTR | 35.0% | |
| CTTAGAAGTCAATTCCATGA+AGG | - | chr4_4:69339326-69339345 | None:intergenic | 35.0% | |
| !! | TGTTGGTTTGTTGGTAGATA+GGG | + | chr4_4:69339413-69339432 | Msa0698890:three_prime_UTR | 35.0% |
| CCAAACACACCAGTGAAAAT+GGG | - | chr4_4:69334781-69334800 | None:intergenic | 40.0% | |
| ACCAAACACACCAGTGAAAA+TGG | - | chr4_4:69334782-69334801 | None:intergenic | 40.0% | |
| ! | GGGACTACTAGCTTATTGTA+AGG | - | chr4_4:69334829-69334848 | None:intergenic | 40.0% |
| !! | GGTTGTGCTTGCTATATATG+TGG | - | chr4_4:69334850-69334869 | None:intergenic | 40.0% |
| AAATGTGTTGGGTAAAGAGC+AGG | + | chr4_4:69335045-69335064 | Msa0698890:intron | 40.0% | |
| TGAGGGGAAATAGGATAGAA+TGG | - | chr4_4:69335180-69335199 | None:intergenic | 40.0% | |
| GCACATAAGTGCAAAACTTC+AGG | + | chr4_4:69335278-69335297 | Msa0698890:intron | 40.0% | |
| CATAAGTGCAAAACTTCAGG+GGG | + | chr4_4:69335281-69335300 | Msa0698890:intron | 40.0% | |
| ATAAGTGCAAAACTTCAGGG+GGG | + | chr4_4:69335282-69335301 | Msa0698890:intron | 40.0% | |
| ACAGAAAAATTTGACGGAGG+GGG | + | chr4_4:69335333-69335352 | Msa0698890:intron | 40.0% | |
| TAACGTTGTGCAATTTCAGG+GGG | + | chr4_4:69335365-69335384 | Msa0698890:intron | 40.0% | |
| ATAGGTCATCTATTACGGGA+CGG | + | chr4_4:69335607-69335626 | Msa0698890:intron | 40.0% | |
| CGTTGTTAGAAAAGCGATGT+TGG | + | chr4_4:69335928-69335947 | Msa0698890:CDS | 40.0% | |
| TGTTAGAAAAGCGATGTTGG+AGG | + | chr4_4:69335931-69335950 | Msa0698890:CDS | 40.0% | |
| AGATTGAAGGTGGTCGTATT+AGG | + | chr4_4:69336006-69336025 | Msa0698890:CDS | 40.0% | |
| GATTGAAGGTGGTCGTATTA+GGG | + | chr4_4:69336007-69336026 | Msa0698890:CDS | 40.0% | |
| ATCAATATGGTCGAAGCACA+CGG | + | chr4_4:69336045-69336064 | Msa0698890:CDS | 40.0% | |
| !! | TGGGATTGATAGTGGGTAAT+TGG | + | chr4_4:69336086-69336105 | Msa0698890:intron | 40.0% |
| TGATGACAATTTGCATAGGG+TGG | + | chr4_4:69336111-69336130 | Msa0698890:intron | 40.0% | |
| TGTTGTCAGTTGCTCAAATG+TGG | + | chr4_4:69336224-69336243 | Msa0698890:intron | 40.0% | |
| TCAGTTGCTCAAATGTGGTA+AGG | + | chr4_4:69336229-69336248 | Msa0698890:intron | 40.0% | |
| CAGTTGCTCAAATGTGGTAA+GGG | + | chr4_4:69336230-69336249 | Msa0698890:intron | 40.0% | |
| ! | GTAGTGAGGATTGTTAGCTT+GGG | + | chr4_4:69336268-69336287 | Msa0698890:intron | 40.0% |
| TGGGATTGTGAGCTGTTAAA+TGG | + | chr4_4:69336287-69336306 | Msa0698890:intron | 40.0% | |
| TGAAGGTTCGTATGAAAGGT+AGG | + | chr4_4:69336318-69336337 | Msa0698890:intron | 40.0% | |
| !! | TATGTTGACTTCGATGGAGT+CGG | + | chr4_4:69336394-69336413 | Msa0698890:CDS | 40.0% |
| ATGGATAATCCAACTAAGCG+AGG | + | chr4_4:69336540-69336559 | Msa0698890:intron | 40.0% | |
| TGACTAATTCCTCGCTTAGT+TGG | - | chr4_4:69336552-69336571 | None:intergenic | 40.0% | |
| ! | GACTATTTGGGGCCTATTTA+TGG | + | chr4_4:69336683-69336702 | Msa0698890:intron | 40.0% |
| ! | TTTGGGGCCTATTTATGGAA+TGG | + | chr4_4:69336688-69336707 | Msa0698890:intron | 40.0% |
| GGCCTATTTATGGAATGGTT+CGG | + | chr4_4:69336693-69336712 | Msa0698890:intron | 40.0% | |
| CTCCGAACCATTCCATAAAT+AGG | - | chr4_4:69336698-69336717 | None:intergenic | 40.0% | |
| GTGCAATTTGGTTATTCAGG+AGG | + | chr4_4:69336756-69336775 | Msa0698890:intron | 40.0% | |
| GCGCTTTGCAATTACAATGA+GGG | + | chr4_4:69337445-69337464 | Msa0698890:intron | 40.0% | |
| TTAAAAGGCTAGACCGAGAA+TGG | - | chr4_4:69337935-69337954 | None:intergenic | 40.0% | |
| GTCTTTCATGCAGATGTTCA+AGG | + | chr4_4:69338243-69338262 | Msa0698890:intron | 40.0% | |
| TTGATGAGAGATGATAGCAG+AGG | + | chr4_4:69338604-69338623 | Msa0698890:intron | 40.0% | |
| !! | TGATTTTGGTCTCTCATCTG+TGG | + | chr4_4:69339352-69339371 | Msa0698890:three_prime_UTR | 40.0% |
| !! | GATTTTGGTCTCTCATCTGT+GGG | + | chr4_4:69339353-69339372 | Msa0698890:three_prime_UTR | 40.0% |
| !! | GATCAAATTGGTAGTGGTGT+TGG | + | chr4_4:69339396-69339415 | Msa0698890:three_prime_UTR | 40.0% |
| !! | GTGTTGGTTTGTTGGTAGAT+AGG | + | chr4_4:69339412-69339431 | Msa0698890:three_prime_UTR | 40.0% |
| CAAGCAAAGCAAATGCGACA+TGG | + | chr4_4:69334605-69334624 | Msa0698890:CDS | 45.0% | |
| GTTGGTGTAGCAGTAGCTAA+TGG | + | chr4_4:69334662-69334681 | Msa0698890:intron | 45.0% | |
| ! | CCCATTTTCACTGGTGTGTT+TGG | + | chr4_4:69334778-69334797 | Msa0698890:intron | 45.0% |
| TAAGTGCAAAACTTCAGGGG+GGG | + | chr4_4:69335283-69335302 | Msa0698890:intron | 45.0% | |
| AACGTTGTGCAATTTCAGGG+GGG | + | chr4_4:69335366-69335385 | Msa0698890:intron | 45.0% | |
| GGAGGAGCTATGAGAATGTT+AGG | + | chr4_4:69335817-69335836 | Msa0698890:intron | 45.0% | |
| GGTCGTATTAGGGAGGTAAA+AGG | + | chr4_4:69336017-69336036 | Msa0698890:CDS | 45.0% | |
| ! | GTGGTTATTCGTAGAGGTGT+GGG | + | chr4_4:69336067-69336086 | Msa0698890:intron | 45.0% |
| ! | TAGAGGTGTGGGATTGATAG+TGG | + | chr4_4:69336078-69336097 | Msa0698890:intron | 45.0% |
| ! | AGAGGTGTGGGATTGATAGT+GGG | + | chr4_4:69336079-69336098 | Msa0698890:intron | 45.0% |
| TGACAATTTGCATAGGGTGG+TGG | + | chr4_4:69336114-69336133 | Msa0698890:intron | 45.0% | |
| ! | TTTTGTGCTTGATGCGTGGT+TGG | + | chr4_4:69336145-69336164 | Msa0698890:intron | 45.0% |
| !! | GAGGGGTACCTATGTGTAAT+AGG | + | chr4_4:69336167-69336186 | Msa0698890:intron | 45.0% |
| GGTAGTGAGGATTGTTAGCT+TGG | + | chr4_4:69336267-69336286 | Msa0698890:intron | 45.0% | |
| AGGTTCGTATGAAAGGTAGG+TGG | + | chr4_4:69336321-69336340 | Msa0698890:intron | 45.0% | |
| GTATGAAAGGTAGGTGGAGA+TGG | + | chr4_4:69336327-69336346 | Msa0698890:CDS | 45.0% | |
| ATGTGTCATCGGATGTTGGA+CGG | + | chr4_4:69336617-69336636 | Msa0698890:intron | 45.0% | |
| CCAAATTGCACAAGGTGATC+AGG | - | chr4_4:69336747-69336766 | None:intergenic | 45.0% | |
| CCTGATCACCTTGTGCAATT+TGG | + | chr4_4:69336744-69336763 | Msa0698890:intron | 45.0% | |
| CGCGCTTTGCAATTACAATG+AGG | + | chr4_4:69337444-69337463 | Msa0698890:intron | 45.0% | |
| GATTGTACAATCCACAAGGG+CGG | + | chr4_4:69337538-69337557 | Msa0698890:intron | 45.0% | |
| ! | TGGGTGCATTCAAGCATTGT+TGG | + | chr4_4:69338998-69339017 | Msa0698890:intron | 45.0% |
| CTCATCTGTGGGTCATGTAT+AGG | + | chr4_4:69339364-69339383 | Msa0698890:three_prime_UTR | 45.0% | |
| !! | TGGTAGTGGTGTTGGTTTGT+TGG | + | chr4_4:69339404-69339423 | Msa0698890:three_prime_UTR | 45.0% |
| !! | TTGATTTATTAAATTTAATA+TGG | - | chr4_4:69335134-69335153 | None:intergenic | 5.0% |
| !!! | TTTTTTATTTATTTATTTGA+GGG | - | chr4_4:69335197-69335216 | None:intergenic | 5.0% |
| !!! | TATTATAAAATTTTAATTGT+AGG | - | chr4_4:69338209-69338228 | None:intergenic | 5.0% |
| ! | GAGGGATTGCCCATTTTCAC+TGG | + | chr4_4:69334769-69334788 | Msa0698890:intron | 50.0% |
| TGGACGCGAGCAAAATGTGT+TGG | + | chr4_4:69335033-69335052 | Msa0698890:intron | 50.0% | |
| GGACGCGAGCAAAATGTGTT+GGG | + | chr4_4:69335034-69335053 | Msa0698890:intron | 50.0% | |
| AAGTGCAAAACTTCAGGGGG+GGG | + | chr4_4:69335284-69335303 | Msa0698890:intron | 50.0% | |
| GTCATCTATTACGGGACGGA+AGG | + | chr4_4:69335611-69335630 | Msa0698890:intron | 50.0% | |
| GCGATGTTGGAGGATGTTTG+TGG | + | chr4_4:69335941-69335960 | Msa0698890:CDS | 50.0% | |
| TGAAGGTGGTCGTATTAGGG+AGG | + | chr4_4:69336010-69336029 | Msa0698890:CDS | 50.0% | |
| AATATGGTCGAAGCACACGG+TGG | + | chr4_4:69336048-69336067 | Msa0698890:CDS | 50.0% | |
| CACACGGTGGTTATTCGTAG+AGG | + | chr4_4:69336061-69336080 | Msa0698890:CDS | 50.0% | |
| GGTGGTTATTCGTAGAGGTG+TGG | + | chr4_4:69336066-69336085 | Msa0698890:intron | 50.0% | |
| GCTCAAATGTGGTAAGGGAG+AGG | + | chr4_4:69336235-69336254 | Msa0698890:intron | 50.0% | |
| AATGTGGTAAGGGAGAGGCT+TGG | + | chr4_4:69336240-69336259 | Msa0698890:intron | 50.0% | |
| GTAAGGGAGAGGCTTGGAAA+TGG | + | chr4_4:69336246-69336265 | Msa0698890:intron | 50.0% | |
| ! | GAGGCTTGGAAATGGTAGTG+AGG | + | chr4_4:69336254-69336273 | Msa0698890:intron | 50.0% |
| TAATTGCAAAGCGCGCGCTA+GGG | - | chr4_4:69337439-69337458 | None:intergenic | 50.0% | |
| AGTGCAAAACTTCAGGGGGG+GGG | + | chr4_4:69335285-69335304 | Msa0698890:intron | 55.0% | |
| TGTGCTTGATGCGTGGTTGG+AGG | + | chr4_4:69336148-69336167 | Msa0698890:intron | 55.0% | |
| GTGCTTGATGCGTGGTTGGA+GGG | + | chr4_4:69336149-69336168 | Msa0698890:intron | 55.0% | |
| TGCTTGATGCGTGGTTGGAG+GGG | + | chr4_4:69336150-69336169 | Msa0698890:intron | 55.0% | |
| GTAATTGCAAAGCGCGCGCT+AGG | - | chr4_4:69337440-69337459 | None:intergenic | 55.0% | |
| GATGGAGTCGGTTGCTCGAG+AGG | + | chr4_4:69336406-69336425 | Msa0698890:CDS | 60.0% | |
| CAGACATGAAGCCGCCCTTG+TGG | - | chr4_4:69337552-69337571 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 69334599 | 69339446 | 69334599 | ID=Msa0698890;Name=Msa0698890 |
| chr4_4 | mRNA | 69334599 | 69339446 | 69334599 | ID=Msa0698890-mRNA-1;Parent=Msa0698890;Name=Msa0698890-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0.25|0.4|0.4|0.75|0.6|5|335|137 |
| chr4_4 | exon | 69334599 | 69334673 | 69334599 | ID=Msa0698890-mRNA-1:exon:20759;Parent=Msa0698890-mRNA-1 |
| chr4_4 | exon | 69335927 | 69336082 | 69335927 | ID=Msa0698890-mRNA-1:exon:20760;Parent=Msa0698890-mRNA-1 |
| chr4_4 | exon | 69336323 | 69336469 | 69336323 | ID=Msa0698890-mRNA-1:exon:20761;Parent=Msa0698890-mRNA-1 |
| chr4_4 | exon | 69338256 | 69338330 | 69338256 | ID=Msa0698890-mRNA-1:exon:20762;Parent=Msa0698890-mRNA-1 |
| chr4_4 | exon | 69339151 | 69339446 | 69339151 | ID=Msa0698890-mRNA-1:exon:20763;Parent=Msa0698890-mRNA-1 |
| chr4_4 | CDS | 69334599 | 69334673 | 69334599 | ID=Msa0698890-mRNA-1:cds;Parent=Msa0698890-mRNA-1 |
| chr4_4 | CDS | 69335927 | 69336082 | 69335927 | ID=Msa0698890-mRNA-1:cds;Parent=Msa0698890-mRNA-1 |
| chr4_4 | CDS | 69336323 | 69336469 | 69336323 | ID=Msa0698890-mRNA-1:cds;Parent=Msa0698890-mRNA-1 |
| chr4_4 | CDS | 69338256 | 69338291 | 69338256 | ID=Msa0698890-mRNA-1:cds;Parent=Msa0698890-mRNA-1 |
| chr4_4 | three_prime_UTR | 69338292 | 69338330 | 69338292 | ID=Msa0698890-mRNA-1:three_prime_utr;Parent=Msa0698890-mRNA-1 |
| chr4_4 | three_prime_UTR | 69339151 | 69339446 | 69339151 | ID=Msa0698890-mRNA-1:three_prime_utr;Parent=Msa0698890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
