Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052370 | XP_013465981.1 | 98.195 | 277 | 5 | 0 | 1 | 277 | 1 | 277 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052370 | sp|Q9FJX3|VDAC2_ARATH | 55.273 | 275 | 123 | 0 | 3 | 277 | 2 | 276 | 1.87e-107 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052370 | A0A072VEI7 | 98.195 | 277 | 5 | 0 | 1 | 277 | 1 | 277 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018050 | Msa0052370 | 0.887149 | 1.838779e-72 | -8.615850e-47 |
| Msa0052370 | Msa0097380 | 0.893541 | 5.710920e-75 | -8.615850e-47 |
| Msa0052370 | Msa0659050 | 0.818572 | 1.827510e-52 | -8.615850e-47 |
| Msa0052370 | Msa0690910 | 0.812216 | 4.740227e-51 | -8.615850e-47 |
| Msa0052370 | Msa0704980 | 0.812039 | 5.181973e-51 | -8.615850e-47 |
| Msa0052370 | Msa1211820 | 0.815185 | 1.052311e-51 | -8.615850e-47 |
| Msa0052370 | Msa1299690 | 0.805732 | 1.157943e-49 | -8.615850e-47 |
| Msa0052370 | Msa1418980 | 0.888566 | 5.269551e-73 | -8.615850e-47 |
| Msa0052370 | Msa1433590 | 0.821424 | 4.067421e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052370 | MtrunA17_Chr1g0152591 | 98.195 | 277 | 5 | 0 | 1 | 277 | 1 | 277 | 0.0 | 549 |
| Msa0052370 | MtrunA17_Chr5g0401201 | 56.364 | 275 | 120 | 0 | 3 | 277 | 2 | 276 | 3.77e-111 | 322 |
| Msa0052370 | MtrunA17_Chr6g0452811 | 44.765 | 277 | 151 | 1 | 3 | 277 | 2 | 278 | 6.49e-77 | 235 |
| Msa0052370 | MtrunA17_Chr7g0216561 | 41.516 | 277 | 162 | 0 | 1 | 277 | 1 | 277 | 4.09e-74 | 228 |
| Msa0052370 | MtrunA17_Chr8g0362621 | 38.686 | 274 | 168 | 0 | 4 | 277 | 3 | 276 | 5.89e-67 | 209 |
| Msa0052370 | MtrunA17_Chr4g0072511 | 39.568 | 278 | 165 | 2 | 3 | 277 | 2 | 279 | 2.43e-65 | 205 |
| Msa0052370 | MtrunA17_Chr4g0060181 | 24.823 | 282 | 166 | 6 | 3 | 277 | 2 | 244 | 2.10e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052370 | AT5G67500.3 | 55.273 | 275 | 123 | 0 | 3 | 277 | 2 | 276 | 1.90e-108 | 315 |
| Msa0052370 | AT5G67500.1 | 54.511 | 266 | 121 | 0 | 3 | 268 | 2 | 267 | 1.81e-102 | 301 |
| Msa0052370 | AT5G67500.2 | 50.331 | 302 | 123 | 1 | 3 | 277 | 2 | 303 | 3.97e-102 | 300 |
| Msa0052370 | AT5G15090.1 | 43.273 | 275 | 152 | 2 | 4 | 277 | 3 | 274 | 1.50e-77 | 237 |
| Msa0052370 | AT5G15090.2 | 43.273 | 275 | 152 | 2 | 4 | 277 | 3 | 274 | 1.50e-77 | 237 |
| Msa0052370 | AT3G01280.1 | 42.701 | 274 | 157 | 0 | 4 | 277 | 3 | 276 | 4.17e-72 | 223 |
| Msa0052370 | AT5G57490.1 | 38.235 | 272 | 166 | 1 | 6 | 277 | 5 | 274 | 2.53e-63 | 200 |
| Msa0052370 | AT3G49920.1 | 39.273 | 275 | 117 | 3 | 3 | 277 | 2 | 226 | 1.35e-54 | 176 |
| Msa0052370 | AT3G49920.2 | 51.220 | 82 | 40 | 0 | 3 | 84 | 2 | 83 | 3.32e-21 | 87.0 |
| Msa0052370 | AT3G49920.4 | 51.220 | 82 | 40 | 0 | 3 | 84 | 2 | 83 | 3.32e-21 | 87.0 |
| Msa0052370 | AT3G49920.3 | 51.316 | 76 | 37 | 0 | 3 | 78 | 2 | 77 | 2.19e-19 | 81.6 |
Find 68 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGTAGAGGGCTCTCTTC+TGG | 0.287936 | 1_2:-6601073 | Msa0052370:CDS |
| GATATCAATTGTTGGTTTCA+TGG | 0.308943 | 1_2:-6599203 | Msa0052370:three_prime_UTR |
| CCTGGCCTCTTCTCCGATAT+TGG | 0.316875 | 1_2:-6601405 | Msa0052370:CDS |
| GGAGAAGAGGCCAGGTCCTT+TGG | 0.352368 | 1_2:+6601413 | None:intergenic |
| GGTACTCCTGGTATTGCGTT+TGG | 0.355399 | 1_2:-6600325 | Msa0052370:CDS |
| TTTGCCTTCACAGTTGTTTG+AGG | 0.384553 | 1_2:+6599455 | None:intergenic |
| AACAATCCCTAATACCTTGC+CGG | 0.385911 | 1_2:+6600516 | None:intergenic |
| TTCAATTAGGATATTATCAA+TGG | 0.399059 | 1_2:+6599094 | None:intergenic |
| TCTTCAAATGATTGATTGGT+TGG | 0.403323 | 1_2:-6599163 | Msa0052370:three_prime_UTR |
| TTGGAAAATAGTCCCAAGTT+TGG | 0.403788 | 1_2:-6599338 | Msa0052370:CDS |
| ACGAAATTGATATCAATTGT+TGG | 0.404102 | 1_2:-6599211 | Msa0052370:three_prime_UTR |
| ATTGACTGGATATATTTAGA+AGG | 0.419120 | 1_2:-6598950 | None:intergenic |
| ACCTTGCCGGATTTGTAGTC+AGG | 0.424993 | 1_2:+6600529 | None:intergenic |
| CATAAGTTACACAGAATACT+TGG | 0.435455 | 1_2:+6599026 | None:intergenic |
| CCTTAGAGGGGTTTAAAATA+CGG | 0.457765 | 1_2:-6599296 | Msa0052370:exon |
| AGGTCATTCTTGACAATCTC+TGG | 0.460118 | 1_2:-6599380 | Msa0052370:CDS |
| CAAAAGTGAGAAACCAAACT+TGG | 0.468557 | 1_2:+6599325 | None:intergenic |
| TCTGCGACAATTGGTACTCC+TGG | 0.472444 | 1_2:-6600337 | Msa0052370:CDS |
| TTCCTTCATGCATAATTGAC+TGG | 0.481208 | 1_2:-6598964 | Msa0052370:three_prime_UTR |
| CAATATCTTCATGATCATGC+TGG | 0.482402 | 1_2:-6600406 | Msa0052370:CDS |
| CGATTACCTGACTACAAATC+CGG | 0.483135 | 1_2:-6600535 | Msa0052370:CDS |
| AACTTTACAAAGTATAATGC+TGG | 0.483313 | 1_2:-6600271 | Msa0052370:CDS |
| CGTGACCTAGAAAAGTTGAA+TGG | 0.484411 | 1_2:-6599560 | Msa0052370:CDS |
| GCCAACATGTGTGGAGTAGC+TGG | 0.487400 | 1_2:+6600294 | None:intergenic |
| AGTACTGAAGCACTGGAACT+TGG | 0.489642 | 1_2:+6600232 | None:intergenic |
| TTCCAATGCCTTTGTTTCGA+AGG | 0.490558 | 1_2:+6599355 | None:intergenic |
| TGCCTTCGAAACAAAGGCAT+TGG | 0.498230 | 1_2:-6599357 | Msa0052370:CDS |
| TTACAAAAGTACTGAAGCAC+TGG | 0.498266 | 1_2:+6600225 | None:intergenic |
| TGCATGAAGGAAGCAACGGC+TGG | 0.508329 | 1_2:+6598975 | None:intergenic |
| TATCCTAATTGAAAACTAGT+TGG | 0.508614 | 1_2:-6599084 | Msa0052370:three_prime_UTR |
| ACGCAAGTACGATACCTTCA+TGG | 0.512055 | 1_2:+6599580 | None:intergenic |
| GTGACCTAGAAAAGTTGAAT+GGG | 0.513987 | 1_2:-6599559 | Msa0052370:CDS |
| TACAAATGAGAACACGTTGA+CGG | 0.515648 | 1_2:-6599501 | Msa0052370:CDS |
| CCTAATTGAAAACTAGTTGG+TGG | 0.517706 | 1_2:-6599081 | Msa0052370:three_prime_UTR |
| CCAATATCGGAGAAGAGGCC+AGG | 0.522813 | 1_2:+6601405 | None:intergenic |
| ATCTCCTCCTCCACCAACTC+CGG | 0.528597 | 1_2:-6601213 | Msa0052370:CDS |
| GACGGTTGGATGTTCTTATG+TGG | 0.530136 | 1_2:-6599483 | Msa0052370:CDS |
| GAGACCGGAGTTGGTGGAGG+AGG | 0.531862 | 1_2:+6601209 | None:intergenic |
| GGAGTTGGTGGAGGAGGAGA+TGG | 0.535242 | 1_2:+6601215 | None:intergenic |
| CTCTGGTGCCTTCGAAACAA+AGG | 0.537828 | 1_2:-6599363 | Msa0052370:CDS |
| CTACATTATTGAAGAGTAGA+GGG | 0.548508 | 1_2:-6601084 | Msa0052370:CDS |
| TCTGCTCCAAACGCAATACC+AGG | 0.563089 | 1_2:+6600319 | None:intergenic |
| ATCCAGTCAATTATGCATGA+AGG | 0.563457 | 1_2:+6598962 | None:intergenic |
| AATGAGAACACGTTGACGGT+TGG | 0.566215 | 1_2:-6599497 | Msa0052370:CDS |
| TCTACATTATTGAAGAGTAG+AGG | 0.566741 | 1_2:-6601085 | Msa0052370:CDS |
| TAAATCATACACAGTGACAA+TGG | 0.574202 | 1_2:+6599121 | None:intergenic |
| AAAGTAATTACTTACGAGAC+CGG | 0.576236 | 1_2:+6601194 | None:intergenic |
| ATTACTTACGAGACCGGAGT+TGG | 0.577626 | 1_2:+6601200 | None:intergenic |
| TACGAGACCGGAGTTGGTGG+AGG | 0.578933 | 1_2:+6601206 | None:intergenic |
| ACTTACGAGACCGGAGTTGG+TGG | 0.580927 | 1_2:+6601203 | None:intergenic |
| GAAGCAAGAACTTTCGCAGA+AGG | 0.589015 | 1_2:+6600562 | None:intergenic |
| ACCAGCTACTCCACACATGT+TGG | 0.594917 | 1_2:-6600295 | Msa0052370:CDS |
| TGATCCTCAAACAACTGTGA+AGG | 0.605878 | 1_2:-6599459 | Msa0052370:CDS |
| GAACAACCATGGCAATCTTG+AGG | 0.623026 | 1_2:-6599429 | Msa0052370:CDS |
| ACAATGTCTTCCAAAGGACC+TGG | 0.623080 | 1_2:-6601423 | Msa0052370:CDS |
| TGTAAAGTTGCCAACATGTG+TGG | 0.636487 | 1_2:+6600285 | None:intergenic |
| TTGTGGGAGAAATTAGCAGA+AGG | 0.636698 | 1_2:-6599529 | Msa0052370:CDS |
| GAAACAACAATGTCTTCCAA+AGG | 0.636707 | 1_2:-6601429 | None:intergenic |
| AAAAGTGAGAAACCAAACTT+GGG | 0.644483 | 1_2:+6599326 | None:intergenic |
| TGACCTAGAAAAGTTGAATG+GGG | 0.648872 | 1_2:-6599558 | Msa0052370:CDS |
| ATTATGCATGAAGGAAGCAA+CGG | 0.651364 | 1_2:+6598971 | None:intergenic |
| AAGGCAAAGCTGAACAACCA+TGG | 0.652579 | 1_2:-6599440 | Msa0052370:CDS |
| TCGATTTAAATCCACAGCAG+CGG | 0.655270 | 1_2:+6600378 | None:intergenic |
| ACCTGACTACAAATCCGGCA+AGG | 0.666565 | 1_2:-6600530 | Msa0052370:intron |
| ATACAGCCTCAAGATTGCCA+TGG | 0.667511 | 1_2:+6599423 | None:intergenic |
| TGACAAGGGAGACTCCATGA+AGG | 0.670618 | 1_2:-6599594 | Msa0052370:CDS |
| GACCTAGAAAAGTTGAATGG+GGG | 0.671119 | 1_2:-6599557 | Msa0052370:CDS |
| TGCAACATCATCTTACACAT+AGG | 0.672932 | 1_2:-6599400 | Msa0052370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTTACTTGGAT+GGG | - | chr1_2:6600554-6600573 | Msa0052370:CDS | 15.0% |
| !! | GAAAAAAAAACTGAGAAAAT+TGG | + | chr1_2:6599048-6599067 | None:intergenic | 20.0% |
| !! | ATTAATTACTACTAAACTTG+CGG | + | chr1_2:6599225-6599244 | None:intergenic | 20.0% |
| !! | TTATTGCTAATCATAATTTC+AGG | - | chr1_2:6599257-6599276 | Msa0052370:three_prime_UTR | 20.0% |
| !!! | TATAAGCTATTTTGTAAAAC+TGG | - | chr1_2:6599555-6599574 | Msa0052370:CDS | 20.0% |
| !!! | ATTCTAAAATCCTACATTTT+CGG | + | chr1_2:6599907-6599926 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTTATTTAGATTG+AGG | - | chr1_2:6599942-6599961 | Msa0052370:intron | 20.0% |
| !!! | TGACCATTTTTATTTTTACT+TGG | - | chr1_2:6600549-6600568 | Msa0052370:CDS | 20.0% |
| !! | CATCCAAGTAAAAATAAAAA+TGG | + | chr1_2:6600555-6600574 | None:intergenic | 20.0% |
| !!! | CATTTTTATTTTTACTTGGA+TGG | - | chr1_2:6600553-6600572 | Msa0052370:CDS | 20.0% |
| !! | TCAATCATTTGAAGAAAAAA+GGG | + | chr1_2:6601205-6601224 | None:intergenic | 20.0% |
| !! | ATCAATCATTTGAAGAAAAA+AGG | + | chr1_2:6601206-6601225 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCAAATGATTGAT+TGG | - | chr1_2:6601206-6601225 | Msa0052370:intron | 20.0% |
| !! | TTCAATTAGGATATTATCAA+TGG | + | chr1_2:6601282-6601301 | None:intergenic | 20.0% |
| !! | ATTACAGTTCAGGTTATTAT+CGG | + | chr1_2:6599441-6599460 | None:intergenic | 25.0% |
| ! | TATGAAAATAAGCTGAAAAC+AGG | - | chr1_2:6599584-6599603 | Msa0052370:CDS | 25.0% |
| ! | AAATCAATTAAAAGCCTGTT+TGG | + | chr1_2:6599697-6599716 | None:intergenic | 25.0% |
| ! | ATTGTTTGGTATATGAAGAT+TGG | - | chr1_2:6599874-6599893 | Msa0052370:intron | 25.0% |
| ! | AACTTTACAAAGTATAATGC+TGG | - | chr1_2:6600102-6600121 | Msa0052370:intron | 25.0% |
| !!! | ACATCATGTCATTTTGATTT+AGG | + | chr1_2:6600362-6600381 | None:intergenic | 25.0% |
| !! | AAGAATAAAAAGCACATTGT+AGG | - | chr1_2:6600417-6600436 | Msa0052370:CDS | 25.0% |
| ! | TTGACATTGCACAATAATTA+AGG | + | chr1_2:6600716-6600735 | None:intergenic | 25.0% |
| !! | TAAGTTACTGTCACATTTTT+CGG | - | chr1_2:6601109-6601128 | Msa0052370:intron | 25.0% |
| ! | ACGAAATTGATATCAATTGT+TGG | - | chr1_2:6601162-6601181 | Msa0052370:intron | 25.0% |
| ! | TATCCTAATTGAAAACTAGT+TGG | - | chr1_2:6601289-6601308 | Msa0052370:intron | 25.0% |
| !!! | TCTGGATTTTTTGCCAATAT+CGG | + | chr1_2:6598984-6599003 | None:intergenic | 30.0% |
| AAAGTAATTACTTACGAGAC+CGG | + | chr1_2:6599182-6599201 | None:intergenic | 30.0% | |
| TACTAAACTTGCGGTAAAAA+AGG | + | chr1_2:6599216-6599235 | None:intergenic | 30.0% | |
| TCTACATTATTGAAGAGTAG+AGG | - | chr1_2:6599288-6599307 | Msa0052370:three_prime_UTR | 30.0% | |
| CTACATTATTGAAGAGTAGA+GGG | - | chr1_2:6599289-6599308 | Msa0052370:three_prime_UTR | 30.0% | |
| !! | ATAACGACACTTTTGATTGA+AGG | + | chr1_2:6599492-6599511 | None:intergenic | 30.0% |
| TGGTATATGAAGATTGGATT+TGG | - | chr1_2:6599880-6599899 | Msa0052370:intron | 30.0% | |
| !! | ATTGATTTTTCTGCGACAAT+TGG | - | chr1_2:6600027-6600046 | Msa0052370:intron | 30.0% |
| ! | AGTACTTTTGTAAGTAACTG+AGG | - | chr1_2:6600158-6600177 | Msa0052370:intron | 30.0% |
| TCCAGATTCATATTGTGAAT+CGG | - | chr1_2:6600194-6600213 | Msa0052370:intron | 30.0% | |
| ! | AATAAAAAGCACATTGTAGG+AGG | - | chr1_2:6600420-6600439 | Msa0052370:intron | 30.0% |
| AAAAGTGAGAAACCAAACTT+GGG | + | chr1_2:6601050-6601069 | None:intergenic | 30.0% | |
| !! | GATATCAATTGTTGGTTTCA+TGG | - | chr1_2:6601170-6601189 | Msa0052370:intron | 30.0% |
| TCTTCAAATGATTGATTGGT+TGG | - | chr1_2:6601210-6601229 | Msa0052370:CDS | 30.0% | |
| TAAATCATACACAGTGACAA+TGG | + | chr1_2:6601255-6601274 | None:intergenic | 30.0% | |
| CATAAGTTACACAGAATACT+TGG | + | chr1_2:6601350-6601369 | None:intergenic | 30.0% | |
| GATATTGGCAAAAAATCCAG+AGG | - | chr1_2:6598983-6599002 | Msa0052370:three_prime_UTR | 35.0% | |
| TTATCTTTCCGATTCCGATT+TGG | - | chr1_2:6599071-6599090 | Msa0052370:three_prime_UTR | 35.0% | |
| ! | TTTTGTGAGAATATCTGCGA+CGG | + | chr1_2:6599113-6599132 | None:intergenic | 35.0% |
| GCTCTCTCTATCTTCTATTT+CGG | - | chr1_2:6599394-6599413 | Msa0052370:CDS | 35.0% | |
| TCAAATAAGCTGATCCAAAC+AGG | - | chr1_2:6599680-6599699 | Msa0052370:intron | 35.0% | |
| GTAATCCATGTATGTTCTTC+AGG | - | chr1_2:6599756-6599775 | Msa0052370:intron | 35.0% | |
| CAATATCTTCATGATCATGC+TGG | - | chr1_2:6599967-6599986 | Msa0052370:intron | 35.0% | |
| !! | TTACAAAAGTACTGAAGCAC+TGG | + | chr1_2:6600151-6600170 | None:intergenic | 35.0% |
| TCCGATTCACAATATGAATC+TGG | + | chr1_2:6600198-6600217 | None:intergenic | 35.0% | |
| !!! | TTTTAAGTCATTGCCGACTT+TGG | - | chr1_2:6600620-6600639 | Msa0052370:intron | 35.0% |
| TTCGATAAGTCTTCCAAAGT+CGG | + | chr1_2:6600636-6600655 | None:intergenic | 35.0% | |
| ! | CGAATAACTGTTACTTGTGT+CGG | - | chr1_2:6600652-6600671 | Msa0052370:intron | 35.0% |
| !!! | TCATTTTTTCAGAGCTGACA+AGG | - | chr1_2:6600764-6600783 | Msa0052370:intron | 35.0% |
| !!! | CATTTTTTCAGAGCTGACAA+GGG | - | chr1_2:6600765-6600784 | Msa0052370:intron | 35.0% |
| GTGACCTAGAAAAGTTGAAT+GGG | - | chr1_2:6600814-6600833 | Msa0052370:intron | 35.0% | |
| TGACCTAGAAAAGTTGAATG+GGG | - | chr1_2:6600815-6600834 | Msa0052370:intron | 35.0% | |
| TACAAATGAGAACACGTTGA+CGG | - | chr1_2:6600872-6600891 | Msa0052370:intron | 35.0% | |
| TGCAACATCATCTTACACAT+AGG | - | chr1_2:6600973-6600992 | Msa0052370:intron | 35.0% | |
| TTGGAAAATAGTCCCAAGTT+TGG | - | chr1_2:6601035-6601054 | Msa0052370:CDS | 35.0% | |
| CAAAAGTGAGAAACCAAACT+TGG | + | chr1_2:6601051-6601070 | None:intergenic | 35.0% | |
| ! | CCTTAGAGGGGTTTAAAATA+CGG | - | chr1_2:6601077-6601096 | Msa0052370:CDS | 35.0% |
| !!! | CCACCAACTAGTTTTCAATT+AGG | + | chr1_2:6601295-6601314 | None:intergenic | 35.0% |
| CCTAATTGAAAACTAGTTGG+TGG | - | chr1_2:6601292-6601311 | Msa0052370:intron | 35.0% | |
| ATTATGCATGAAGGAAGCAA+CGG | + | chr1_2:6601405-6601424 | None:intergenic | 35.0% | |
| TTCCTTCATGCATAATTGAC+TGG | - | chr1_2:6601409-6601428 | Msa0052370:CDS | 35.0% | |
| ATCCAGTCAATTATGCATGA+AGG | + | chr1_2:6601414-6601433 | None:intergenic | 35.0% | |
| ! | TTTTGCCAATATCGGAGAAG+AGG | + | chr1_2:6598976-6598995 | None:intergenic | 40.0% |
| TCGGAAAACCAAATCGGAAT+CGG | + | chr1_2:6599082-6599101 | None:intergenic | 40.0% | |
| TCGAGATCGGAAAACCAAAT+CGG | + | chr1_2:6599088-6599107 | None:intergenic | 40.0% | |
| ! | GGAGATGGTGAGTTTTTGAT+CGG | + | chr1_2:6599146-6599165 | None:intergenic | 40.0% |
| ! | AGTTCAGGTTATTATCGGTG+TGG | + | chr1_2:6599436-6599455 | None:intergenic | 40.0% |
| GAAGCATGTGATTACAGTTC+AGG | + | chr1_2:6599451-6599470 | None:intergenic | 40.0% | |
| AAGGTATGTACAACACGTCA+CGG | + | chr1_2:6599473-6599492 | None:intergenic | 40.0% | |
| ATGAGTTTCGTATCACTGCA+TGG | + | chr1_2:6599646-6599665 | None:intergenic | 40.0% | |
| CAACACCTGAAGAACATACA+TGG | + | chr1_2:6599764-6599783 | None:intergenic | 40.0% | |
| CGATTACCTGACTACAAATC+CGG | - | chr1_2:6599838-6599857 | Msa0052370:intron | 40.0% | |
| ! | TACAAATCCGGCAAGGTATT+AGG | - | chr1_2:6599850-6599869 | Msa0052370:intron | 40.0% |
| ! | ACAAATCCGGCAAGGTATTA+GGG | - | chr1_2:6599851-6599870 | Msa0052370:intron | 40.0% |
| AACAATCCCTAATACCTTGC+CGG | + | chr1_2:6599860-6599879 | None:intergenic | 40.0% | |
| ! | GCAAGGTATTAGGGATTGTT+TGG | - | chr1_2:6599860-6599879 | Msa0052370:intron | 40.0% |
| TGGATTTGGACCGAAAATGT+AGG | - | chr1_2:6599894-6599913 | Msa0052370:intron | 40.0% | |
| TCGATTTAAATCCACAGCAG+CGG | + | chr1_2:6599998-6600017 | None:intergenic | 40.0% | |
| GTCGCAGAAAAATCAATAGC+AGG | + | chr1_2:6600024-6600043 | None:intergenic | 40.0% | |
| TGTAAAGTTGCCAACATGTG+TGG | + | chr1_2:6600091-6600110 | None:intergenic | 40.0% | |
| AACACTGCACAATACACTGT+AGG | - | chr1_2:6600390-6600409 | Msa0052370:CDS | 40.0% | |
| TTGCACAATAATTAAGGCCC+CGG | + | chr1_2:6600710-6600729 | None:intergenic | 40.0% | |
| CGTGACCTAGAAAAGTTGAA+TGG | - | chr1_2:6600813-6600832 | Msa0052370:intron | 40.0% | |
| GACCTAGAAAAGTTGAATGG+GGG | - | chr1_2:6600816-6600835 | Msa0052370:intron | 40.0% | |
| TTGTGGGAGAAATTAGCAGA+AGG | - | chr1_2:6600844-6600863 | Msa0052370:intron | 40.0% | |
| TGATCCTCAAACAACTGTGA+AGG | - | chr1_2:6600914-6600933 | Msa0052370:intron | 40.0% | |
| TTTGCCTTCACAGTTGTTTG+AGG | + | chr1_2:6600921-6600940 | None:intergenic | 40.0% | |
| AGGTCATTCTTGACAATCTC+TGG | - | chr1_2:6600993-6601012 | Msa0052370:intron | 40.0% | |
| ! | TTCCAATGCCTTTGTTTCGA+AGG | + | chr1_2:6601021-6601040 | None:intergenic | 40.0% |
| ! | ACTTTTGCTCAAGCCTTAGA+GGG | - | chr1_2:6601064-6601083 | Msa0052370:CDS | 40.0% |
| !! | CCGTATTTTAAACCCCTCTA+AGG | + | chr1_2:6601080-6601099 | None:intergenic | 40.0% |
| AAGAGAGTGAGTGTTACCTC+TGG | + | chr1_2:6599002-6599021 | None:intergenic | 45.0% | |
| ATTACTTACGAGACCGGAGT+TGG | + | chr1_2:6599176-6599195 | None:intergenic | 45.0% | |
| GAAGCAAGAACTTTCGCAGA+AGG | + | chr1_2:6599814-6599833 | None:intergenic | 45.0% | |
| !! | AGTACTGAAGCACTGGAACT+TGG | + | chr1_2:6600144-6600163 | None:intergenic | 45.0% |
| CTGCACAATACACTGTAGGA+AGG | - | chr1_2:6600394-6600413 | Msa0052370:CDS | 45.0% | |
| TGGATGGGATGTTCTTTCTC+TGG | - | chr1_2:6600569-6600588 | Msa0052370:CDS | 45.0% | |
| ACGCAAGTACGATACCTTCA+TGG | + | chr1_2:6600796-6600815 | None:intergenic | 45.0% | |
| ! | CTCCCCCATTCAACTTTTCT+AGG | + | chr1_2:6600821-6600840 | None:intergenic | 45.0% |
| AATGAGAACACGTTGACGGT+TGG | - | chr1_2:6600876-6600895 | Msa0052370:intron | 45.0% | |
| GACGGTTGGATGTTCTTATG+TGG | - | chr1_2:6600890-6600909 | Msa0052370:intron | 45.0% | |
| AAGGCAAAGCTGAACAACCA+TGG | - | chr1_2:6600933-6600952 | Msa0052370:intron | 45.0% | |
| GAACAACCATGGCAATCTTG+AGG | - | chr1_2:6600944-6600963 | Msa0052370:intron | 45.0% | |
| ATACAGCCTCAAGATTGCCA+TGG | + | chr1_2:6600953-6600972 | None:intergenic | 45.0% | |
| ! | TGCCTTCGAAACAAAGGCAT+TGG | - | chr1_2:6601016-6601035 | Msa0052370:CDS | 45.0% |
| ! | CACTTTTGCTCAAGCCTTAG+AGG | - | chr1_2:6601063-6601082 | Msa0052370:CDS | 45.0% |
| ! | CTTTTGCTCAAGCCTTAGAG+GGG | - | chr1_2:6601065-6601084 | Msa0052370:CDS | 45.0% |
| ATCTGCGACGGAATCGAGAT+CGG | + | chr1_2:6599101-6599120 | None:intergenic | 50.0% | |
| AAGAGTAGAGGGCTCTCTTC+TGG | - | chr1_2:6599300-6599319 | Msa0052370:exon | 50.0% | |
| ACCTGACTACAAATCCGGCA+AGG | - | chr1_2:6599843-6599862 | Msa0052370:intron | 50.0% | |
| ACCTTGCCGGATTTGTAGTC+AGG | + | chr1_2:6599847-6599866 | None:intergenic | 50.0% | |
| TCTGCGACAATTGGTACTCC+TGG | - | chr1_2:6600036-6600055 | Msa0052370:intron | 50.0% | |
| GGTACTCCTGGTATTGCGTT+TGG | - | chr1_2:6600048-6600067 | Msa0052370:intron | 50.0% | |
| TCTGCTCCAAACGCAATACC+AGG | + | chr1_2:6600057-6600076 | None:intergenic | 50.0% | |
| ACCAGCTACTCCACACATGT+TGG | - | chr1_2:6600078-6600097 | Msa0052370:intron | 50.0% | |
| AAGCACATTGTAGGAGGCAG+TGG | - | chr1_2:6600426-6600445 | Msa0052370:intron | 50.0% | |
| AGCACATTGTAGGAGGCAGT+GGG | - | chr1_2:6600427-6600446 | Msa0052370:intron | 50.0% | |
| ! | ACCAAAAGCGCAGTGTGCAA+GGG | - | chr1_2:6600451-6600470 | Msa0052370:intron | 50.0% |
| TACCGAGCCCTGCAAATTTC+CGG | - | chr1_2:6600688-6600707 | Msa0052370:intron | 50.0% | |
| TAAGGCCCCGGAAATTTGCA+GGG | + | chr1_2:6600698-6600717 | None:intergenic | 50.0% | |
| TTAAGGCCCCGGAAATTTGC+AGG | + | chr1_2:6600699-6600718 | None:intergenic | 50.0% | |
| TGACAAGGGAGACTCCATGA+AGG | - | chr1_2:6600779-6600798 | Msa0052370:intron | 50.0% | |
| TTGAATGGGGGAGCTGTTGT+GGG | - | chr1_2:6600828-6600847 | Msa0052370:intron | 50.0% | |
| CTCTGGTGCCTTCGAAACAA+AGG | - | chr1_2:6601010-6601029 | Msa0052370:CDS | 50.0% | |
| CCAATATCGGAGAAGAGGCC+AGG | + | chr1_2:6598971-6598990 | None:intergenic | 55.0% | |
| CCTGGCCTCTTCTCCGATAT+TGG | - | chr1_2:6598968-6598987 | Msa0052370:three_prime_UTR | 55.0% | |
| ATCTCCTCCTCCACCAACTC+CGG | - | chr1_2:6599160-6599179 | Msa0052370:three_prime_UTR | 55.0% | |
| ACTTACGAGACCGGAGTTGG+TGG | + | chr1_2:6599173-6599192 | None:intergenic | 55.0% | |
| !!! | TGCTGGTTTTACCGCTGCTG+TGG | - | chr1_2:6599984-6600003 | Msa0052370:intron | 55.0% |
| GCCAACATGTGTGGAGTAGC+TGG | + | chr1_2:6600082-6600101 | None:intergenic | 55.0% | |
| GCACATTGTAGGAGGCAGTG+GGG | - | chr1_2:6600428-6600447 | Msa0052370:intron | 55.0% | |
| ! | GACCAAAAGCGCAGTGTGCA+AGG | - | chr1_2:6600450-6600469 | Msa0052370:intron | 55.0% |
| AGTGTGCAAGGGCTCTTCAG+TGG | - | chr1_2:6600462-6600481 | Msa0052370:intron | 55.0% | |
| ACCGAGCCCTGCAAATTTCC+GGG | - | chr1_2:6600689-6600708 | Msa0052370:intron | 55.0% | |
| GTTGAATGGGGGAGCTGTTG+TGG | - | chr1_2:6600827-6600846 | Msa0052370:intron | 55.0% | |
| TGCATGAAGGAAGCAACGGC+TGG | + | chr1_2:6601401-6601420 | None:intergenic | 55.0% | |
| GGAGAAGAGGCCAGGTCCTT+TGG | + | chr1_2:6598963-6598982 | None:intergenic | 60.0% | |
| !! | GGAGTTGGTGGAGGAGGAGA+TGG | + | chr1_2:6599161-6599180 | None:intergenic | 60.0% |
| !! | TACGAGACCGGAGTTGGTGG+AGG | + | chr1_2:6599170-6599189 | None:intergenic | 60.0% |
| GGTGTGGACGTGTCAGTGAG+AGG | + | chr1_2:6599420-6599439 | None:intergenic | 60.0% | |
| ! | GCCCTTGCACACTGCGCTTT+TGG | + | chr1_2:6600455-6600474 | None:intergenic | 60.0% |
| CCCCGGAAATTTGCAGGGCT+CGG | + | chr1_2:6600693-6600712 | None:intergenic | 60.0% | |
| CCGAGCCCTGCAAATTTCCG+GGG | - | chr1_2:6600690-6600709 | Msa0052370:intron | 60.0% | |
| !! | GAGACCGGAGTTGGTGGAGG+AGG | + | chr1_2:6599167-6599186 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 6598953 | 6601442 | 6598953 | ID=Msa0052370;Name=Msa0052370 |
| chr1_2 | mRNA | 6598953 | 6601442 | 6598953 | ID=Msa0052370-mRNA-1;Parent=Msa0052370;Name=Msa0052370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.83|1|1|1|6|360|277 |
| chr1_2 | exon | 6598953 | 6599619 | 6598953 | ID=Msa0052370-mRNA-1:exon:2180;Parent=Msa0052370-mRNA-1 |
| chr1_2 | exon | 6600229 | 6600437 | 6600229 | ID=Msa0052370-mRNA-1:exon:2179;Parent=Msa0052370-mRNA-1 |
| chr1_2 | exon | 6600531 | 6600617 | 6600531 | ID=Msa0052370-mRNA-1:exon:2178;Parent=Msa0052370-mRNA-1 |
| chr1_2 | exon | 6601006 | 6601116 | 6601006 | ID=Msa0052370-mRNA-1:exon:2177;Parent=Msa0052370-mRNA-1 |
| chr1_2 | exon | 6601209 | 6601276 | 6601209 | ID=Msa0052370-mRNA-1:exon:2176;Parent=Msa0052370-mRNA-1 |
| chr1_2 | exon | 6601391 | 6601442 | 6601391 | ID=Msa0052370-mRNA-1:exon:2175;Parent=Msa0052370-mRNA-1 |
| chr1_2 | CDS | 6601391 | 6601442 | 6601391 | ID=Msa0052370-mRNA-1:cds;Parent=Msa0052370-mRNA-1 |
| chr1_2 | CDS | 6601209 | 6601276 | 6601209 | ID=Msa0052370-mRNA-1:cds;Parent=Msa0052370-mRNA-1 |
| chr1_2 | CDS | 6601006 | 6601116 | 6601006 | ID=Msa0052370-mRNA-1:cds;Parent=Msa0052370-mRNA-1 |
| chr1_2 | CDS | 6600531 | 6600617 | 6600531 | ID=Msa0052370-mRNA-1:cds;Parent=Msa0052370-mRNA-1 |
| chr1_2 | CDS | 6600229 | 6600437 | 6600229 | ID=Msa0052370-mRNA-1:cds;Parent=Msa0052370-mRNA-1 |
| chr1_2 | CDS | 6599313 | 6599619 | 6599313 | ID=Msa0052370-mRNA-1:cds;Parent=Msa0052370-mRNA-1 |
| chr1_2 | three_prime_UTR | 6598953 | 6599312 | 6598953 | ID=Msa0052370-mRNA-1:three_prime_utr;Parent=Msa0052370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
