AlfalfaGEDB | Msa0052370

M. sativa cultivar zhongmu-4 / Msa0052370

KEGG: K15040
GO: -
PFAM: PF01459.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052370	XP_013465981.1	98.195	277	5	0	1	277	1	277	0.0	549

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052370	sp\|Q9FJX3\|VDAC2_ARATH	55.273	275	123	0	3	277	2	276	1.87e-107	315

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052370	A0A072VEI7	98.195	277	5	0	1	277	1	277	0.0	549

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0018050	Msa0052370	0.887149	1.838779e-72	-8.615850e-47
Msa0052370	Msa0097380	0.893541	5.710920e-75	-8.615850e-47
Msa0052370	Msa0659050	0.818572	1.827510e-52	-8.615850e-47
Msa0052370	Msa0690910	0.812216	4.740227e-51	-8.615850e-47
Msa0052370	Msa0704980	0.812039	5.181973e-51	-8.615850e-47
Msa0052370	Msa1211820	0.815185	1.052311e-51	-8.615850e-47
Msa0052370	Msa1299690	0.805732	1.157943e-49	-8.615850e-47
Msa0052370	Msa1418980	0.888566	5.269551e-73	-8.615850e-47
Msa0052370	Msa1433590	0.821424	4.067421e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052370	MtrunA17_Chr1g0152591	98.195	277	5	0	1	277	1	277	0.0	549
Msa0052370	MtrunA17_Chr5g0401201	56.364	275	120	0	3	277	2	276	3.77e-111	322
Msa0052370	MtrunA17_Chr6g0452811	44.765	277	151	1	3	277	2	278	6.49e-77	235
Msa0052370	MtrunA17_Chr7g0216561	41.516	277	162	0	1	277	1	277	4.09e-74	228
Msa0052370	MtrunA17_Chr8g0362621	38.686	274	168	0	4	277	3	276	5.89e-67	209
Msa0052370	MtrunA17_Chr4g0072511	39.568	278	165	2	3	277	2	279	2.43e-65	205
Msa0052370	MtrunA17_Chr4g0060181	24.823	282	166	6	3	277	2	244	2.10e-23	95.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052370	AT5G67500.3	55.273	275	123	0	3	277	2	276	1.90e-108	315
Msa0052370	AT5G67500.1	54.511	266	121	0	3	268	2	267	1.81e-102	301
Msa0052370	AT5G67500.2	50.331	302	123	1	3	277	2	303	3.97e-102	300
Msa0052370	AT5G15090.1	43.273	275	152	2	4	277	3	274	1.50e-77	237
Msa0052370	AT5G15090.2	43.273	275	152	2	4	277	3	274	1.50e-77	237
Msa0052370	AT3G01280.1	42.701	274	157	0	4	277	3	276	4.17e-72	223
Msa0052370	AT5G57490.1	38.235	272	166	1	6	277	5	274	2.53e-63	200
Msa0052370	AT3G49920.1	39.273	275	117	3	3	277	2	226	1.35e-54	176
Msa0052370	AT3G49920.2	51.220	82	40	0	3	84	2	83	3.32e-21	87.0
Msa0052370	AT3G49920.4	51.220	82	40	0	3	84	2	83	3.32e-21	87.0

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Find 68 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGAGAAACCAAACTT+GGG	0.644483	1_2:+6599326	None:intergenic
AAAGTAATTACTTACGAGAC+CGG	0.576236	1_2:+6601194	None:intergenic
AACAATCCCTAATACCTTGC+CGG	0.385911	1_2:+6600516	None:intergenic
AACTTTACAAAGTATAATGC+TGG	0.483313	1_2:-6600271	Msa0052370:CDS
AAGAGTAGAGGGCTCTCTTC+TGG	0.287936	1_2:-6601073	Msa0052370:CDS
AAGGCAAAGCTGAACAACCA+TGG	0.652579	1_2:-6599440	Msa0052370:CDS
AATGAGAACACGTTGACGGT+TGG	0.566215	1_2:-6599497	Msa0052370:CDS
ACAATGTCTTCCAAAGGACC+TGG	0.623080	1_2:-6601423	Msa0052370:CDS
ACCAGCTACTCCACACATGT+TGG	0.594917	1_2:-6600295	Msa0052370:CDS
ACCTGACTACAAATCCGGCA+AGG	0.666565	1_2:-6600530	Msa0052370:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTAATTACTTACGAGAC+CGG	+	chr1_2:6599182-6599201	None:intergenic	30.0%
TACTAAACTTGCGGTAAAAA+AGG	+	chr1_2:6599216-6599235	None:intergenic	30.0%
TCTACATTATTGAAGAGTAG+AGG	-	chr1_2:6599288-6599307	Msa0052370:three_prime_UTR	30.0%
CTACATTATTGAAGAGTAGA+GGG	-	chr1_2:6599289-6599308	Msa0052370:three_prime_UTR	30.0%
TGGTATATGAAGATTGGATT+TGG	-	chr1_2:6599880-6599899	Msa0052370:intron	30.0%
TCCAGATTCATATTGTGAAT+CGG	-	chr1_2:6600194-6600213	Msa0052370:intron	30.0%
AAAAGTGAGAAACCAAACTT+GGG	+	chr1_2:6601050-6601069	None:intergenic	30.0%
TCTTCAAATGATTGATTGGT+TGG	-	chr1_2:6601210-6601229	Msa0052370:CDS	30.0%
TAAATCATACACAGTGACAA+TGG	+	chr1_2:6601255-6601274	None:intergenic	30.0%
CATAAGTTACACAGAATACT+TGG	+	chr1_2:6601350-6601369	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	6598953	6601442	6598953	ID=Msa0052370;Name=Msa0052370
chr1_2	mRNA	6598953	6601442	6598953	ID=Msa0052370-mRNA-1;Parent=Msa0052370;Name=Msa0052370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|1\|0.83\|1\|1\|1\|6\|360\|277
chr1_2	exon	6598953	6599619	6598953	ID=Msa0052370-mRNA-1:exon:2180;Parent=Msa0052370-mRNA-1
chr1_2	exon	6600229	6600437	6600229	ID=Msa0052370-mRNA-1:exon:2179;Parent=Msa0052370-mRNA-1
chr1_2	exon	6600531	6600617	6600531	ID=Msa0052370-mRNA-1:exon:2178;Parent=Msa0052370-mRNA-1
chr1_2	exon	6601006	6601116	6601006	ID=Msa0052370-mRNA-1:exon:2177;Parent=Msa0052370-mRNA-1
chr1_2	exon	6601209	6601276	6601209	ID=Msa0052370-mRNA-1:exon:2176;Parent=Msa0052370-mRNA-1
chr1_2	exon	6601391	6601442	6601391	ID=Msa0052370-mRNA-1:exon:2175;Parent=Msa0052370-mRNA-1
chr1_2	CDS	6601391	6601442	6601391	ID=Msa0052370-mRNA-1:cds;Parent=Msa0052370-mRNA-1
chr1_2	CDS	6601209	6601276	6601209	ID=Msa0052370-mRNA-1:cds;Parent=Msa0052370-mRNA-1
chr1_2	CDS	6601006	6601116	6601006	ID=Msa0052370-mRNA-1:cds;Parent=Msa0052370-mRNA-1
chr1_2	CDS	6600531	6600617	6600531	ID=Msa0052370-mRNA-1:cds;Parent=Msa0052370-mRNA-1
chr1_2	CDS	6600229	6600437	6600229	ID=Msa0052370-mRNA-1:cds;Parent=Msa0052370-mRNA-1
chr1_2	CDS	6599313	6599619	6599313	ID=Msa0052370-mRNA-1:cds;Parent=Msa0052370-mRNA-1
chr1_2	three_prime_UTR	6598953	6599312	6598953	ID=Msa0052370-mRNA-1:three_prime_utr;Parent=Msa0052370-mRNA-1

Gene Sequence

>Msa0052370

ATGTCTTCCAAAGGACCTGGCCTCTTCTCCGATATTGGCAAAAAATCCAGAGATATTCTCACAAAAGATTACAACTCCGATCAAAAACTCACCATCTCCTCCTCCACCAACTCCGGTCTCGATTTGAACTCTACATTATTGAAGAGTAGAGGGCTCTCTTCTGGAGATGTTGCTGCTCAATTTAAGCATAATAACAAAACTCTTCATTTCAAAGTTGATACTGATTCAACTGTGTTGACAACATTTAGTTCGACAGATTTTGTGCCTTCTGCGAAAGTTCTTGCTTCTGTTCGATTACCTGACTACAAATCCGGCAAGATTGAGGTTCAATATCTTCATGATCATGCTGGTTTTACCGCTGCTGTGGATTTAAATCGAAAGCCTGCTATTGATTTTTCTGCGACAATTGGTACTCCTGGTATTGCGTTTGGAGCAGAAACCAGCTACTCCACACATGTTGGCAACTTTACAAAGTATAATGCTGGATTGTGCTTGAAGCTGCCAAGTTCCAGTGCTTCAGTACTTTTAGCTGACAAGGGAGACTCCATGAAGGTATCGTACTTGCGTGACCTAGAAAAGTTGAATGGGGGAGCTGTTGTGGGAGAAATTAGCAGAAGGTTCTCTACAAATGAGAACACGTTGACGGTTGGATGTTCTTATGTGGTTGATCCTCAAACAACTGTGAAGGCAAAGCTGAACAACCATGGCAATCTTGAGGCTGTATTGCAACATCATCTTACACATAGGTCATTCTTGACAATCTCTGGTGCCTTCGAAACAAAGGCATTGGAAAATAGTCCCAAGTTTGGTTTCTCACTTTTGCTCAAGCCTTAG

Protein sequence

>Msa0052370

MSSKGPGLFSDIGKKSRDILTKDYNSDQKLTISSSTNSGLDLNSTLLKSRGLSSGDVAAQFKHNNKTLHFKVDTDSTVLTTFSSTDFVPSAKVLASVRLPDYKSGKIEVQYLHDHAGFTAAVDLNRKPAIDFSATIGTPGIAFGAETSYSTHVGNFTKYNAGLCLKLPSSSASVLLADKGDSMKVSYLRDLEKLNGGAVVGEISRRFSTNENTLTVGCSYVVDPQTTVKAKLNNHGNLEAVLQHHLTHRSFLTISGAFETKALENSPKFGFSLLLKP*