Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018050 | XP_013465981.1 | 98.195 | 277 | 5 | 0 | 1 | 277 | 1 | 277 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018050 | sp|Q9FJX3|VDAC2_ARATH | 55.273 | 275 | 123 | 0 | 3 | 277 | 2 | 276 | 1.87e-107 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018050 | A0A072VEI7 | 98.195 | 277 | 5 | 0 | 1 | 277 | 1 | 277 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018050 | Msa0052370 | 0.887149 | 1.838779e-72 | -8.615850e-47 |
| Msa0018050 | Msa0097380 | 0.985015 | 2.848939e-162 | -8.615850e-47 |
| Msa0018050 | Msa0262400 | 0.803936 | 2.748273e-49 | -8.615850e-47 |
| Msa0018050 | Msa0659050 | 0.808074 | 3.702021e-50 | -8.615850e-47 |
| Msa0018050 | Msa0728870 | 0.801850 | 7.410400e-49 | -8.615850e-47 |
| Msa0018050 | Msa1211820 | 0.844111 | 9.253123e-59 | -8.615850e-47 |
| Msa0018050 | Msa1299690 | 0.824732 | 6.882477e-54 | -8.615850e-47 |
| Msa0018050 | Msa1332230 | 0.830649 | 2.607167e-55 | -8.615850e-47 |
| Msa0018050 | Msa1418980 | 0.986532 | 4.196988e-167 | -8.615850e-47 |
| Msa0018050 | Msa1433590 | 0.860382 | 2.147652e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018050 | MtrunA17_Chr1g0152591 | 98.195 | 277 | 5 | 0 | 1 | 277 | 1 | 277 | 0.0 | 549 |
| Msa0018050 | MtrunA17_Chr5g0401201 | 56.364 | 275 | 120 | 0 | 3 | 277 | 2 | 276 | 3.77e-111 | 322 |
| Msa0018050 | MtrunA17_Chr6g0452811 | 44.765 | 277 | 151 | 1 | 3 | 277 | 2 | 278 | 6.49e-77 | 235 |
| Msa0018050 | MtrunA17_Chr7g0216561 | 41.516 | 277 | 162 | 0 | 1 | 277 | 1 | 277 | 4.09e-74 | 228 |
| Msa0018050 | MtrunA17_Chr8g0362621 | 38.686 | 274 | 168 | 0 | 4 | 277 | 3 | 276 | 5.89e-67 | 209 |
| Msa0018050 | MtrunA17_Chr4g0072511 | 39.568 | 278 | 165 | 2 | 3 | 277 | 2 | 279 | 2.43e-65 | 205 |
| Msa0018050 | MtrunA17_Chr4g0060181 | 24.823 | 282 | 166 | 6 | 3 | 277 | 2 | 244 | 2.10e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018050 | AT5G67500.3 | 55.273 | 275 | 123 | 0 | 3 | 277 | 2 | 276 | 1.90e-108 | 315 |
| Msa0018050 | AT5G67500.1 | 54.511 | 266 | 121 | 0 | 3 | 268 | 2 | 267 | 1.81e-102 | 301 |
| Msa0018050 | AT5G67500.2 | 50.331 | 302 | 123 | 1 | 3 | 277 | 2 | 303 | 3.97e-102 | 300 |
| Msa0018050 | AT5G15090.1 | 43.273 | 275 | 152 | 2 | 4 | 277 | 3 | 274 | 1.50e-77 | 237 |
| Msa0018050 | AT5G15090.2 | 43.273 | 275 | 152 | 2 | 4 | 277 | 3 | 274 | 1.50e-77 | 237 |
| Msa0018050 | AT3G01280.1 | 42.701 | 274 | 157 | 0 | 4 | 277 | 3 | 276 | 4.17e-72 | 223 |
| Msa0018050 | AT5G57490.1 | 38.235 | 272 | 166 | 1 | 6 | 277 | 5 | 274 | 2.53e-63 | 200 |
| Msa0018050 | AT3G49920.1 | 39.273 | 275 | 117 | 3 | 3 | 277 | 2 | 226 | 1.35e-54 | 176 |
| Msa0018050 | AT3G49920.2 | 51.220 | 82 | 40 | 0 | 3 | 84 | 2 | 83 | 3.32e-21 | 87.0 |
| Msa0018050 | AT3G49920.4 | 51.220 | 82 | 40 | 0 | 3 | 84 | 2 | 83 | 3.32e-21 | 87.0 |
| Msa0018050 | AT3G49920.3 | 51.316 | 76 | 37 | 0 | 3 | 78 | 2 | 77 | 2.19e-19 | 81.6 |
Find 66 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGTAGAGGGCTCTCTTC+TGG | 0.287936 | 1_1:-30154717 | Msa0018050:CDS |
| GATATCAATTGTTGGTTTCA+TGG | 0.308943 | 1_1:-30152846 | Msa0018050:three_prime_UTR |
| CCTGGCCTCTTCTCCGATAT+TGG | 0.316875 | 1_1:-30155049 | Msa0018050:CDS |
| GGAGAAGAGGCCAGGTCCTT+TGG | 0.352368 | 1_1:+30155057 | None:intergenic |
| GGTACTCCTGGTATTGCGTT+TGG | 0.355399 | 1_1:-30153968 | Msa0018050:CDS |
| TTTGCCTTCACAGTTGTTTG+AGG | 0.384553 | 1_1:+30153098 | None:intergenic |
| AACAATCCCTAATACCTTGC+CGG | 0.385911 | 1_1:+30154159 | None:intergenic |
| TCTTCAAATGATTGATTGGT+TGG | 0.403323 | 1_1:-30152806 | Msa0018050:three_prime_UTR |
| TTGGAAAATAGTCCCAAGTT+TGG | 0.403788 | 1_1:-30152981 | Msa0018050:CDS |
| ACGAAATTGATATCAATTGT+TGG | 0.404102 | 1_1:-30152854 | Msa0018050:three_prime_UTR |
| ATTGACTGGATATATTTAGA+AGG | 0.419120 | 1_1:-30152593 | None:intergenic |
| ACCTTGCCGGATTTGTAGTC+AGG | 0.424993 | 1_1:+30154172 | None:intergenic |
| CATAAGTTACACAGAATACT+TGG | 0.435455 | 1_1:+30152669 | None:intergenic |
| CCTTAGAGGGGTTTAAAATA+CGG | 0.457765 | 1_1:-30152939 | Msa0018050:exon |
| AGGTCATTCTTGACAATCTC+TGG | 0.460118 | 1_1:-30153023 | Msa0018050:CDS |
| CAAAAGTGAGAAACCAAACT+TGG | 0.468557 | 1_1:+30152968 | None:intergenic |
| TCTGCGACAATTGGTACTCC+TGG | 0.472444 | 1_1:-30153980 | Msa0018050:CDS |
| TTCCTTCATGCATAATTGAC+TGG | 0.481208 | 1_1:-30152607 | Msa0018050:three_prime_UTR |
| CAATATCTTCATGATCATGC+TGG | 0.482402 | 1_1:-30154049 | Msa0018050:CDS |
| CGATTACCTGACTACAAATC+CGG | 0.483135 | 1_1:-30154178 | Msa0018050:CDS |
| AACTTTACAAAGTATAATGC+TGG | 0.483313 | 1_1:-30153914 | Msa0018050:CDS |
| CGTGACCTAGAAAAGTTGAA+TGG | 0.484411 | 1_1:-30153203 | Msa0018050:CDS |
| GCCAACATGTGTGGAGTAGC+TGG | 0.487400 | 1_1:+30153937 | None:intergenic |
| AGTACTGAAGCACTGGAACT+TGG | 0.489642 | 1_1:+30153875 | None:intergenic |
| TTCCAATGCCTTTGTTTCGA+AGG | 0.490558 | 1_1:+30152998 | None:intergenic |
| TGCCTTCGAAACAAAGGCAT+TGG | 0.498230 | 1_1:-30153000 | Msa0018050:CDS |
| TTACAAAAGTACTGAAGCAC+TGG | 0.498266 | 1_1:+30153868 | None:intergenic |
| TGCATGAAGGAAGCAACGGC+TGG | 0.508329 | 1_1:+30152618 | None:intergenic |
| TATCCTAATTGAAAACTAGT+TGG | 0.508614 | 1_1:-30152727 | Msa0018050:three_prime_UTR |
| ACGCAAGTACGATACCTTCA+TGG | 0.512055 | 1_1:+30153223 | None:intergenic |
| GTGACCTAGAAAAGTTGAAT+GGG | 0.513987 | 1_1:-30153202 | Msa0018050:CDS |
| TACAAATGAGAACACGTTGA+CGG | 0.515648 | 1_1:-30153144 | Msa0018050:CDS |
| CCTAATTGAAAACTAGTTGG+TGG | 0.517706 | 1_1:-30152724 | Msa0018050:three_prime_UTR |
| CCAATATCGGAGAAGAGGCC+AGG | 0.522813 | 1_1:+30155049 | None:intergenic |
| ATCTCCTCCTCCACCAACTC+CGG | 0.528597 | 1_1:-30154857 | Msa0018050:CDS |
| GACGGTTGGATGTTCTTATG+TGG | 0.530136 | 1_1:-30153126 | Msa0018050:CDS |
| GAGACCGGAGTTGGTGGAGG+AGG | 0.531862 | 1_1:+30154853 | None:intergenic |
| GGAGTTGGTGGAGGAGGAGA+TGG | 0.535242 | 1_1:+30154859 | None:intergenic |
| CTCTGGTGCCTTCGAAACAA+AGG | 0.537828 | 1_1:-30153006 | Msa0018050:CDS |
| CTACATTATTGAAGAGTAGA+GGG | 0.548508 | 1_1:-30154728 | Msa0018050:CDS |
| TCTGCTCCAAACGCAATACC+AGG | 0.563089 | 1_1:+30153962 | None:intergenic |
| ATCCAGTCAATTATGCATGA+AGG | 0.563457 | 1_1:+30152605 | None:intergenic |
| AATGAGAACACGTTGACGGT+TGG | 0.566215 | 1_1:-30153140 | Msa0018050:CDS |
| TCTACATTATTGAAGAGTAG+AGG | 0.566741 | 1_1:-30154729 | Msa0018050:CDS |
| TAAATCATACACAGTGACAA+TGG | 0.574202 | 1_1:+30152764 | None:intergenic |
| AAAGTAATTACTTACGAGAC+CGG | 0.576236 | 1_1:+30154838 | None:intergenic |
| ATTACTTACGAGACCGGAGT+TGG | 0.577626 | 1_1:+30154844 | None:intergenic |
| TACGAGACCGGAGTTGGTGG+AGG | 0.578933 | 1_1:+30154850 | None:intergenic |
| ACTTACGAGACCGGAGTTGG+TGG | 0.580927 | 1_1:+30154847 | None:intergenic |
| GAAGCAAGAACTTTCGCAGA+AGG | 0.589015 | 1_1:+30154205 | None:intergenic |
| ACCAGCTACTCCACACATGT+TGG | 0.594917 | 1_1:-30153938 | Msa0018050:CDS |
| TGATCCTCAAACAACTGTGA+AGG | 0.605878 | 1_1:-30153102 | Msa0018050:CDS |
| GAACAACCATGGCAATCTTG+AGG | 0.623026 | 1_1:-30153072 | Msa0018050:CDS |
| ACAATGTCTTCCAAAGGACC+TGG | 0.623080 | 1_1:-30155067 | Msa0018050:CDS |
| TGTAAAGTTGCCAACATGTG+TGG | 0.636487 | 1_1:+30153928 | None:intergenic |
| TTGTGGGAGAAATTAGCAGA+AGG | 0.636698 | 1_1:-30153172 | Msa0018050:CDS |
| GAAACAACAATGTCTTCCAA+AGG | 0.636707 | 1_1:-30155073 | None:intergenic |
| AAAAGTGAGAAACCAAACTT+GGG | 0.644483 | 1_1:+30152969 | None:intergenic |
| TGACCTAGAAAAGTTGAATG+GGG | 0.648872 | 1_1:-30153201 | Msa0018050:CDS |
| ATTATGCATGAAGGAAGCAA+CGG | 0.651364 | 1_1:+30152614 | None:intergenic |
| AAGGCAAAGCTGAACAACCA+TGG | 0.652579 | 1_1:-30153083 | Msa0018050:CDS |
| ACCTGACTACAAATCCGGCA+AGG | 0.666565 | 1_1:-30154173 | Msa0018050:intron |
| ATACAGCCTCAAGATTGCCA+TGG | 0.667511 | 1_1:+30153066 | None:intergenic |
| TGACAAGGGAGACTCCATGA+AGG | 0.670618 | 1_1:-30153237 | Msa0018050:CDS |
| GACCTAGAAAAGTTGAATGG+GGG | 0.671119 | 1_1:-30153200 | Msa0018050:CDS |
| TGCAACATCATCTTACACAT+AGG | 0.672932 | 1_1:-30153043 | Msa0018050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTTACTTGGAT+GGG | - | chr1_1:30154198-30154217 | Msa0018050:CDS | 15.0% |
| !! | GAAAAAAAAACTGAGAAAAT+TGG | + | chr1_1:30152691-30152710 | None:intergenic | 20.0% |
| !! | ATTAATTACTACTAAACTTG+CGG | + | chr1_1:30152868-30152887 | None:intergenic | 20.0% |
| !! | TTATTGCTAATCATAATTTC+AGG | - | chr1_1:30152900-30152919 | Msa0018050:three_prime_UTR | 20.0% |
| !! | TATAAGCTATATTGTAAAAC+TGG | - | chr1_1:30153199-30153218 | Msa0018050:CDS | 20.0% |
| !!! | ATTCTAAAATCCTACATTTT+CGG | + | chr1_1:30153551-30153570 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTTATTTAGATTG+AGG | - | chr1_1:30153586-30153605 | Msa0018050:intron | 20.0% |
| !!! | TGACCATTTTTATTTTTACT+TGG | - | chr1_1:30154193-30154212 | Msa0018050:CDS | 20.0% |
| !! | CATCCAAGTAAAAATAAAAA+TGG | + | chr1_1:30154199-30154218 | None:intergenic | 20.0% |
| !!! | CATTTTTATTTTTACTTGGA+TGG | - | chr1_1:30154197-30154216 | Msa0018050:CDS | 20.0% |
| !! | TCAATCATTTGAAGAAAAAA+GGG | + | chr1_1:30154849-30154868 | None:intergenic | 20.0% |
| !! | ATCAATCATTTGAAGAAAAA+AGG | + | chr1_1:30154850-30154869 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCAAATGATTGAT+TGG | - | chr1_1:30154850-30154869 | Msa0018050:intron | 20.0% |
| !! | ATTACAGTTCAGGTTATTAT+CGG | + | chr1_1:30153084-30153103 | None:intergenic | 25.0% |
| ! | TATGAAAATAAGCTGAAAAC+AGG | - | chr1_1:30153228-30153247 | Msa0018050:CDS | 25.0% |
| ! | AAATCAATTAAAAGCCTGTT+TGG | + | chr1_1:30153341-30153360 | None:intergenic | 25.0% |
| ! | ATTGTTTGGTATATGAAGAT+TGG | - | chr1_1:30153518-30153537 | Msa0018050:intron | 25.0% |
| ! | AACTTTACAAAGTATAATGC+TGG | - | chr1_1:30153746-30153765 | Msa0018050:intron | 25.0% |
| !!! | ACATCATGTCATTTTGATTT+AGG | + | chr1_1:30154006-30154025 | None:intergenic | 25.0% |
| !! | AAGAATAAAAAGCACATTGT+AGG | - | chr1_1:30154061-30154080 | Msa0018050:CDS | 25.0% |
| ! | TTGACATTGCACAATAATTA+AGG | + | chr1_1:30154360-30154379 | None:intergenic | 25.0% |
| !! | TAAGTTACTGTCACATTTTT+CGG | - | chr1_1:30154753-30154772 | Msa0018050:intron | 25.0% |
| ! | ACGAAATTGATATCAATTGT+TGG | - | chr1_1:30154806-30154825 | Msa0018050:intron | 25.0% |
| ! | TATCCTAATTGAAAACTAGT+TGG | - | chr1_1:30154933-30154952 | Msa0018050:intron | 25.0% |
| !!! | TCTGGATTTTTTGCCAATAT+CGG | + | chr1_1:30152627-30152646 | None:intergenic | 30.0% |
| AAAGTAATTACTTACGAGAC+CGG | + | chr1_1:30152825-30152844 | None:intergenic | 30.0% | |
| TACTAAACTTGCGGTAAAAA+AGG | + | chr1_1:30152859-30152878 | None:intergenic | 30.0% | |
| TCTACATTATTGAAGAGTAG+AGG | - | chr1_1:30152931-30152950 | Msa0018050:three_prime_UTR | 30.0% | |
| CTACATTATTGAAGAGTAGA+GGG | - | chr1_1:30152932-30152951 | Msa0018050:three_prime_UTR | 30.0% | |
| ! | ATACCTTCAATCAAAAGTGT+CGG | - | chr1_1:30153129-30153148 | Msa0018050:CDS | 30.0% |
| TGGTATATGAAGATTGGATT+TGG | - | chr1_1:30153524-30153543 | Msa0018050:intron | 30.0% | |
| !! | ATTGATTTTTCTGCGACAAT+TGG | - | chr1_1:30153671-30153690 | Msa0018050:intron | 30.0% |
| ! | AGTACTTTTGTAAGTAACTG+AGG | - | chr1_1:30153802-30153821 | Msa0018050:intron | 30.0% |
| TCCAGATTCATATTGTGAAT+CGG | - | chr1_1:30153838-30153857 | Msa0018050:intron | 30.0% | |
| ! | AATAAAAAGCACATTGTAGG+AGG | - | chr1_1:30154064-30154083 | Msa0018050:intron | 30.0% |
| AAAAGTGAGAAACCAAACTT+GGG | + | chr1_1:30154694-30154713 | None:intergenic | 30.0% | |
| !! | GATATCAATTGTTGGTTTCA+TGG | - | chr1_1:30154814-30154833 | Msa0018050:intron | 30.0% |
| TCTTCAAATGATTGATTGGT+TGG | - | chr1_1:30154854-30154873 | Msa0018050:CDS | 30.0% | |
| TAAATCATACACAGTGACAA+TGG | + | chr1_1:30154899-30154918 | None:intergenic | 30.0% | |
| CATAAGTTACACAGAATACT+TGG | + | chr1_1:30154994-30155013 | None:intergenic | 30.0% | |
| GATATTGGCAAAAAATCCAG+AGG | - | chr1_1:30152626-30152645 | Msa0018050:three_prime_UTR | 35.0% | |
| TTATCTTTCCGATTCCGATT+TGG | - | chr1_1:30152714-30152733 | Msa0018050:three_prime_UTR | 35.0% | |
| ! | TTTTGTGAGAATATCTGCGA+CGG | + | chr1_1:30152756-30152775 | None:intergenic | 35.0% |
| GCTCTCTCTATCTTCTATTT+CGG | - | chr1_1:30153037-30153056 | Msa0018050:CDS | 35.0% | |
| !! | TAACCGACACTTTTGATTGA+AGG | + | chr1_1:30153135-30153154 | None:intergenic | 35.0% |
| ATGAGTTTCATATCACTGCA+TGG | + | chr1_1:30153290-30153309 | None:intergenic | 35.0% | |
| TCAAATAAGCTGATCCAAAC+AGG | - | chr1_1:30153324-30153343 | Msa0018050:intron | 35.0% | |
| GTAATCCATGTATGTTCTTC+AGG | - | chr1_1:30153400-30153419 | Msa0018050:intron | 35.0% | |
| CAATATCTTCATGATCATGC+TGG | - | chr1_1:30153611-30153630 | Msa0018050:intron | 35.0% | |
| !! | TTACAAAAGTACTGAAGCAC+TGG | + | chr1_1:30153795-30153814 | None:intergenic | 35.0% |
| TCCGATTCACAATATGAATC+TGG | + | chr1_1:30153842-30153861 | None:intergenic | 35.0% | |
| !!! | TTTTAAGTCATTGCCGACTT+TGG | - | chr1_1:30154264-30154283 | Msa0018050:intron | 35.0% |
| TTCGATAAGTCTTCCAAAGT+CGG | + | chr1_1:30154280-30154299 | None:intergenic | 35.0% | |
| ! | CGAATAACTGTTACTTGTGT+CGG | - | chr1_1:30154296-30154315 | Msa0018050:intron | 35.0% |
| !!! | TCATTTTTTCAGAGCTGACA+AGG | - | chr1_1:30154408-30154427 | Msa0018050:intron | 35.0% |
| !!! | CATTTTTTCAGAGCTGACAA+GGG | - | chr1_1:30154409-30154428 | Msa0018050:intron | 35.0% |
| GTGACCTAGAAAAGTTGAAT+GGG | - | chr1_1:30154458-30154477 | Msa0018050:intron | 35.0% | |
| TGACCTAGAAAAGTTGAATG+GGG | - | chr1_1:30154459-30154478 | Msa0018050:intron | 35.0% | |
| TACAAATGAGAACACGTTGA+CGG | - | chr1_1:30154516-30154535 | Msa0018050:intron | 35.0% | |
| TGCAACATCATCTTACACAT+AGG | - | chr1_1:30154617-30154636 | Msa0018050:intron | 35.0% | |
| TTGGAAAATAGTCCCAAGTT+TGG | - | chr1_1:30154679-30154698 | Msa0018050:CDS | 35.0% | |
| CAAAAGTGAGAAACCAAACT+TGG | + | chr1_1:30154695-30154714 | None:intergenic | 35.0% | |
| ! | CCTTAGAGGGGTTTAAAATA+CGG | - | chr1_1:30154721-30154740 | Msa0018050:CDS | 35.0% |
| !!! | CCACCAACTAGTTTTCAATT+AGG | + | chr1_1:30154939-30154958 | None:intergenic | 35.0% |
| CCTAATTGAAAACTAGTTGG+TGG | - | chr1_1:30154936-30154955 | Msa0018050:intron | 35.0% | |
| ATTATGCATGAAGGAAGCAA+CGG | + | chr1_1:30155049-30155068 | None:intergenic | 35.0% | |
| TTCCTTCATGCATAATTGAC+TGG | - | chr1_1:30155053-30155072 | Msa0018050:CDS | 35.0% | |
| ATCCAGTCAATTATGCATGA+AGG | + | chr1_1:30155058-30155077 | None:intergenic | 35.0% | |
| ! | TTTTGCCAATATCGGAGAAG+AGG | + | chr1_1:30152619-30152638 | None:intergenic | 40.0% |
| TCGGAAAACCAAATCGGAAT+CGG | + | chr1_1:30152725-30152744 | None:intergenic | 40.0% | |
| TCGAGATCGGAAAACCAAAT+CGG | + | chr1_1:30152731-30152750 | None:intergenic | 40.0% | |
| ! | GGAGATGGTGAGTTTTTGAT+CGG | + | chr1_1:30152789-30152808 | None:intergenic | 40.0% |
| ! | AGTTCAGGTTATTATCGGTG+TGG | + | chr1_1:30153079-30153098 | None:intergenic | 40.0% |
| GAAGCATGTGATTACAGTTC+AGG | + | chr1_1:30153094-30153113 | None:intergenic | 40.0% | |
| AAGGTATGTACAACACGTCA+CGG | + | chr1_1:30153116-30153135 | None:intergenic | 40.0% | |
| CAACACCTGAAGAACATACA+TGG | + | chr1_1:30153408-30153427 | None:intergenic | 40.0% | |
| CGATTACCTGACTACAAATC+CGG | - | chr1_1:30153482-30153501 | Msa0018050:intron | 40.0% | |
| ! | TACAAATCCGGCAAGGTATT+AGG | - | chr1_1:30153494-30153513 | Msa0018050:intron | 40.0% |
| ! | ACAAATCCGGCAAGGTATTA+GGG | - | chr1_1:30153495-30153514 | Msa0018050:intron | 40.0% |
| AACAATCCCTAATACCTTGC+CGG | + | chr1_1:30153504-30153523 | None:intergenic | 40.0% | |
| ! | GCAAGGTATTAGGGATTGTT+TGG | - | chr1_1:30153504-30153523 | Msa0018050:intron | 40.0% |
| TGGATTTGGACCGAAAATGT+AGG | - | chr1_1:30153538-30153557 | Msa0018050:intron | 40.0% | |
| GTCGCAGAAAAATCAATAGC+AGG | + | chr1_1:30153668-30153687 | None:intergenic | 40.0% | |
| TGTAAAGTTGCCAACATGTG+TGG | + | chr1_1:30153735-30153754 | None:intergenic | 40.0% | |
| AACACTGCACAATACACTGT+AGG | - | chr1_1:30154034-30154053 | Msa0018050:CDS | 40.0% | |
| TTGCACAATAATTAAGGCCC+CGG | + | chr1_1:30154354-30154373 | None:intergenic | 40.0% | |
| CGTGACCTAGAAAAGTTGAA+TGG | - | chr1_1:30154457-30154476 | Msa0018050:intron | 40.0% | |
| GACCTAGAAAAGTTGAATGG+GGG | - | chr1_1:30154460-30154479 | Msa0018050:intron | 40.0% | |
| TTGTGGGAGAAATTAGCAGA+AGG | - | chr1_1:30154488-30154507 | Msa0018050:intron | 40.0% | |
| TGATCCTCAAACAACTGTGA+AGG | - | chr1_1:30154558-30154577 | Msa0018050:intron | 40.0% | |
| TTTGCCTTCACAGTTGTTTG+AGG | + | chr1_1:30154565-30154584 | None:intergenic | 40.0% | |
| AGGTCATTCTTGACAATCTC+TGG | - | chr1_1:30154637-30154656 | Msa0018050:intron | 40.0% | |
| ! | TTCCAATGCCTTTGTTTCGA+AGG | + | chr1_1:30154665-30154684 | None:intergenic | 40.0% |
| ! | ACTTTTGCTCAAGCCTTAGA+GGG | - | chr1_1:30154708-30154727 | Msa0018050:CDS | 40.0% |
| !! | CCGTATTTTAAACCCCTCTA+AGG | + | chr1_1:30154724-30154743 | None:intergenic | 40.0% |
| AAGAGAGTGAGTGTTACCTC+TGG | + | chr1_1:30152645-30152664 | None:intergenic | 45.0% | |
| ATTACTTACGAGACCGGAGT+TGG | + | chr1_1:30152819-30152838 | None:intergenic | 45.0% | |
| GAAGCAAGAACTTTCGCAGA+AGG | + | chr1_1:30153458-30153477 | None:intergenic | 45.0% | |
| !! | AGTACTGAAGCACTGGAACT+TGG | + | chr1_1:30153788-30153807 | None:intergenic | 45.0% |
| CTGCACAATACACTGTAGGA+AGG | - | chr1_1:30154038-30154057 | Msa0018050:CDS | 45.0% | |
| TGGATGGGATGTTCTTTCTC+TGG | - | chr1_1:30154213-30154232 | Msa0018050:CDS | 45.0% | |
| ACGCAAGTACGATACCTTCA+TGG | + | chr1_1:30154440-30154459 | None:intergenic | 45.0% | |
| ! | CTCCCCCATTCAACTTTTCT+AGG | + | chr1_1:30154465-30154484 | None:intergenic | 45.0% |
| AATGAGAACACGTTGACGGT+TGG | - | chr1_1:30154520-30154539 | Msa0018050:intron | 45.0% | |
| GACGGTTGGATGTTCTTATG+TGG | - | chr1_1:30154534-30154553 | Msa0018050:intron | 45.0% | |
| AAGGCAAAGCTGAACAACCA+TGG | - | chr1_1:30154577-30154596 | Msa0018050:intron | 45.0% | |
| GAACAACCATGGCAATCTTG+AGG | - | chr1_1:30154588-30154607 | Msa0018050:intron | 45.0% | |
| ATACAGCCTCAAGATTGCCA+TGG | + | chr1_1:30154597-30154616 | None:intergenic | 45.0% | |
| ! | TGCCTTCGAAACAAAGGCAT+TGG | - | chr1_1:30154660-30154679 | Msa0018050:CDS | 45.0% |
| ! | CACTTTTGCTCAAGCCTTAG+AGG | - | chr1_1:30154707-30154726 | Msa0018050:CDS | 45.0% |
| ! | CTTTTGCTCAAGCCTTAGAG+GGG | - | chr1_1:30154709-30154728 | Msa0018050:CDS | 45.0% |
| ATCTGCGACGGAATCGAGAT+CGG | + | chr1_1:30152744-30152763 | None:intergenic | 50.0% | |
| AAGAGTAGAGGGCTCTCTTC+TGG | - | chr1_1:30152943-30152962 | Msa0018050:exon | 50.0% | |
| ACCTGACTACAAATCCGGCA+AGG | - | chr1_1:30153487-30153506 | Msa0018050:intron | 50.0% | |
| ACCTTGCCGGATTTGTAGTC+AGG | + | chr1_1:30153491-30153510 | None:intergenic | 50.0% | |
| !!! | TGCTGGTTTTACTGCTGCTG+TGG | - | chr1_1:30153628-30153647 | Msa0018050:intron | 50.0% |
| TCTGCGACAATTGGTACTCC+TGG | - | chr1_1:30153680-30153699 | Msa0018050:intron | 50.0% | |
| GGTACTCCTGGTATTGCGTT+TGG | - | chr1_1:30153692-30153711 | Msa0018050:intron | 50.0% | |
| TCTGCTCCAAACGCAATACC+AGG | + | chr1_1:30153701-30153720 | None:intergenic | 50.0% | |
| ACCAGCTACTCCACACATGT+TGG | - | chr1_1:30153722-30153741 | Msa0018050:intron | 50.0% | |
| AAGCACATTGTAGGAGGCAG+TGG | - | chr1_1:30154070-30154089 | Msa0018050:intron | 50.0% | |
| AGCACATTGTAGGAGGCAGT+GGG | - | chr1_1:30154071-30154090 | Msa0018050:intron | 50.0% | |
| ! | ACCAAAAGCGCAGTGTGCAA+GGG | - | chr1_1:30154095-30154114 | Msa0018050:intron | 50.0% |
| TACCGAGCCCTGCAAATTTC+CGG | - | chr1_1:30154332-30154351 | Msa0018050:intron | 50.0% | |
| TAAGGCCCCGGAAATTTGCA+GGG | + | chr1_1:30154342-30154361 | None:intergenic | 50.0% | |
| TTAAGGCCCCGGAAATTTGC+AGG | + | chr1_1:30154343-30154362 | None:intergenic | 50.0% | |
| TGACAAGGGAGACTCCATGA+AGG | - | chr1_1:30154423-30154442 | Msa0018050:intron | 50.0% | |
| TTGAATGGGGGAGCTGTTGT+GGG | - | chr1_1:30154472-30154491 | Msa0018050:intron | 50.0% | |
| CTCTGGTGCCTTCGAAACAA+AGG | - | chr1_1:30154654-30154673 | Msa0018050:CDS | 50.0% | |
| CCAATATCGGAGAAGAGGCC+AGG | + | chr1_1:30152614-30152633 | None:intergenic | 55.0% | |
| CCTGGCCTCTTCTCCGATAT+TGG | - | chr1_1:30152611-30152630 | Msa0018050:three_prime_UTR | 55.0% | |
| ATCTCCTCCTCCACCAACTC+CGG | - | chr1_1:30152803-30152822 | Msa0018050:three_prime_UTR | 55.0% | |
| ACTTACGAGACCGGAGTTGG+TGG | + | chr1_1:30152816-30152835 | None:intergenic | 55.0% | |
| GCCAACATGTGTGGAGTAGC+TGG | + | chr1_1:30153726-30153745 | None:intergenic | 55.0% | |
| GCACATTGTAGGAGGCAGTG+GGG | - | chr1_1:30154072-30154091 | Msa0018050:intron | 55.0% | |
| ! | GACCAAAAGCGCAGTGTGCA+AGG | - | chr1_1:30154094-30154113 | Msa0018050:intron | 55.0% |
| AGTGTGCAAGGGCTCTTCAG+TGG | - | chr1_1:30154106-30154125 | Msa0018050:intron | 55.0% | |
| ACCGAGCCCTGCAAATTTCC+GGG | - | chr1_1:30154333-30154352 | Msa0018050:intron | 55.0% | |
| GTTGAATGGGGGAGCTGTTG+TGG | - | chr1_1:30154471-30154490 | Msa0018050:intron | 55.0% | |
| TGCATGAAGGAAGCAACGGC+TGG | + | chr1_1:30155045-30155064 | None:intergenic | 55.0% | |
| GGAGAAGAGGCCAGGTCCTT+TGG | + | chr1_1:30152606-30152625 | None:intergenic | 60.0% | |
| !! | GGAGTTGGTGGAGGAGGAGA+TGG | + | chr1_1:30152804-30152823 | None:intergenic | 60.0% |
| !! | TACGAGACCGGAGTTGGTGG+AGG | + | chr1_1:30152813-30152832 | None:intergenic | 60.0% |
| GGTGTGGACGTGTCAGTGAG+AGG | + | chr1_1:30153063-30153082 | None:intergenic | 60.0% | |
| ! | GCCCTTGCACACTGCGCTTT+TGG | + | chr1_1:30154099-30154118 | None:intergenic | 60.0% |
| CCCCGGAAATTTGCAGGGCT+CGG | + | chr1_1:30154337-30154356 | None:intergenic | 60.0% | |
| CCGAGCCCTGCAAATTTCCG+GGG | - | chr1_1:30154334-30154353 | Msa0018050:intron | 60.0% | |
| !! | GAGACCGGAGTTGGTGGAGG+AGG | + | chr1_1:30152810-30152829 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 30152596 | 30155086 | 30152596 | ID=Msa0018050;Name=Msa0018050 |
| chr1_1 | mRNA | 30152596 | 30155086 | 30152596 | ID=Msa0018050-mRNA-1;Parent=Msa0018050;Name=Msa0018050-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.83|1|1|1|6|360|277 |
| chr1_1 | exon | 30152596 | 30153262 | 30152596 | ID=Msa0018050-mRNA-1:exon:10102;Parent=Msa0018050-mRNA-1 |
| chr1_1 | exon | 30153872 | 30154080 | 30153872 | ID=Msa0018050-mRNA-1:exon:10101;Parent=Msa0018050-mRNA-1 |
| chr1_1 | exon | 30154174 | 30154260 | 30154174 | ID=Msa0018050-mRNA-1:exon:10100;Parent=Msa0018050-mRNA-1 |
| chr1_1 | exon | 30154650 | 30154760 | 30154650 | ID=Msa0018050-mRNA-1:exon:10099;Parent=Msa0018050-mRNA-1 |
| chr1_1 | exon | 30154853 | 30154920 | 30154853 | ID=Msa0018050-mRNA-1:exon:10098;Parent=Msa0018050-mRNA-1 |
| chr1_1 | exon | 30155035 | 30155086 | 30155035 | ID=Msa0018050-mRNA-1:exon:10097;Parent=Msa0018050-mRNA-1 |
| chr1_1 | CDS | 30155035 | 30155086 | 30155035 | ID=Msa0018050-mRNA-1:cds;Parent=Msa0018050-mRNA-1 |
| chr1_1 | CDS | 30154853 | 30154920 | 30154853 | ID=Msa0018050-mRNA-1:cds;Parent=Msa0018050-mRNA-1 |
| chr1_1 | CDS | 30154650 | 30154760 | 30154650 | ID=Msa0018050-mRNA-1:cds;Parent=Msa0018050-mRNA-1 |
| chr1_1 | CDS | 30154174 | 30154260 | 30154174 | ID=Msa0018050-mRNA-1:cds;Parent=Msa0018050-mRNA-1 |
| chr1_1 | CDS | 30153872 | 30154080 | 30153872 | ID=Msa0018050-mRNA-1:cds;Parent=Msa0018050-mRNA-1 |
| chr1_1 | CDS | 30152956 | 30153262 | 30152956 | ID=Msa0018050-mRNA-1:cds;Parent=Msa0018050-mRNA-1 |
| chr1_1 | three_prime_UTR | 30152596 | 30152955 | 30152596 | ID=Msa0018050-mRNA-1:three_prime_utr;Parent=Msa0018050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
