Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418980 | sp|Q9FJX3|VDAC2_ARATH | 55.273 | 275 | 123 | 0 | 3 | 277 | 2 | 276 | 1.87e-107 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418980 | A0A072VEI7 | 98.195 | 277 | 5 | 0 | 1 | 277 | 1 | 277 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018050 | Msa1418980 | 0.986532 | 4.196988e-167 | -8.615850e-47 |
| Msa0052370 | Msa1418980 | 0.888566 | 5.269551e-73 | -8.615850e-47 |
| Msa0080510 | Msa1418980 | 0.816074 | 6.670475e-52 | -8.615850e-47 |
| Msa0097380 | Msa1418980 | 0.995726 | 3.087636e-219 | -8.615850e-47 |
| Msa1418980 | Msa1433590 | 0.856038 | 4.214627e-62 | -8.615850e-47 |
| Msa0659050 | Msa1418980 | 0.800042 | 1.734762e-48 | -8.615850e-47 |
| Msa1299690 | Msa1418980 | 0.812362 | 4.404879e-51 | -8.615850e-47 |
| Msa1332230 | Msa1418980 | 0.831515 | 1.598360e-55 | -8.615850e-47 |
| Msa1211820 | Msa1418980 | 0.838344 | 3.041125e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418980 | MtrunA17_Chr1g0152591 | 98.195 | 277 | 5 | 0 | 1 | 277 | 1 | 277 | 0.0 | 549 |
| Msa1418980 | MtrunA17_Chr5g0401201 | 56.364 | 275 | 120 | 0 | 3 | 277 | 2 | 276 | 3.77e-111 | 322 |
| Msa1418980 | MtrunA17_Chr6g0452811 | 44.765 | 277 | 151 | 1 | 3 | 277 | 2 | 278 | 6.49e-77 | 235 |
| Msa1418980 | MtrunA17_Chr7g0216561 | 41.516 | 277 | 162 | 0 | 1 | 277 | 1 | 277 | 4.09e-74 | 228 |
| Msa1418980 | MtrunA17_Chr8g0362621 | 38.686 | 274 | 168 | 0 | 4 | 277 | 3 | 276 | 5.89e-67 | 209 |
| Msa1418980 | MtrunA17_Chr4g0072511 | 39.568 | 278 | 165 | 2 | 3 | 277 | 2 | 279 | 2.43e-65 | 205 |
| Msa1418980 | MtrunA17_Chr4g0060181 | 24.823 | 282 | 166 | 6 | 3 | 277 | 2 | 244 | 2.10e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418980 | AT5G67500.3 | 55.273 | 275 | 123 | 0 | 3 | 277 | 2 | 276 | 1.90e-108 | 315 |
| Msa1418980 | AT5G67500.1 | 54.511 | 266 | 121 | 0 | 3 | 268 | 2 | 267 | 1.81e-102 | 301 |
| Msa1418980 | AT5G67500.2 | 50.331 | 302 | 123 | 1 | 3 | 277 | 2 | 303 | 3.97e-102 | 300 |
| Msa1418980 | AT5G15090.1 | 43.273 | 275 | 152 | 2 | 4 | 277 | 3 | 274 | 1.50e-77 | 237 |
| Msa1418980 | AT5G15090.2 | 43.273 | 275 | 152 | 2 | 4 | 277 | 3 | 274 | 1.50e-77 | 237 |
| Msa1418980 | AT3G01280.1 | 42.701 | 274 | 157 | 0 | 4 | 277 | 3 | 276 | 4.17e-72 | 223 |
| Msa1418980 | AT5G57490.1 | 38.235 | 272 | 166 | 1 | 6 | 277 | 5 | 274 | 2.53e-63 | 200 |
| Msa1418980 | AT3G49920.1 | 39.273 | 275 | 117 | 3 | 3 | 277 | 2 | 226 | 1.35e-54 | 176 |
| Msa1418980 | AT3G49920.2 | 51.220 | 82 | 40 | 0 | 3 | 84 | 2 | 83 | 3.32e-21 | 87.0 |
| Msa1418980 | AT3G49920.4 | 51.220 | 82 | 40 | 0 | 3 | 84 | 2 | 83 | 3.32e-21 | 87.0 |
| Msa1418980 | AT3G49920.3 | 51.316 | 76 | 37 | 0 | 3 | 78 | 2 | 77 | 2.19e-19 | 81.6 |
Find 67 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGTAGAGGGCTCTCTTC+TGG | 0.287936 | tig0024656:-64418 | Msa1418980:CDS |
| GATATCAATTGTTGGTTTCA+TGG | 0.308943 | tig0024656:-62547 | Msa1418980:three_prime_UTR |
| CCTGGCCTCTTCTCCGATAT+TGG | 0.316875 | tig0024656:-64750 | Msa1418980:CDS |
| GGAGAAGAGGCCAGGTCCTT+TGG | 0.352368 | tig0024656:+64758 | None:intergenic |
| GGTACTCCTGGTATTGCGTT+TGG | 0.355399 | tig0024656:-63669 | Msa1418980:CDS |
| TTTGCCTTCACAGTTGTTTG+AGG | 0.384553 | tig0024656:+62799 | None:intergenic |
| AACAATCCCTAATACCTTGC+CGG | 0.385911 | tig0024656:+63860 | None:intergenic |
| TTCAATTAGGATATTATCAA+TGG | 0.399059 | tig0024656:+62438 | None:intergenic |
| TCTTCAAATGATTGATTGGT+TGG | 0.403323 | tig0024656:-62507 | Msa1418980:three_prime_UTR |
| TTGGAAAATAGTCCCAAGTT+TGG | 0.403788 | tig0024656:-62682 | Msa1418980:CDS |
| ACGAAATTGATATCAATTGT+TGG | 0.404102 | tig0024656:-62555 | Msa1418980:three_prime_UTR |
| ATTGACTGGATATATTTAGA+AGG | 0.419120 | tig0024656:-62294 | None:intergenic |
| ACCTTGCCGGATTTGTAGTC+AGG | 0.424993 | tig0024656:+63873 | None:intergenic |
| CATAAGTTACACAGAATACT+TGG | 0.435455 | tig0024656:+62370 | None:intergenic |
| CCTTAGAGGGGTTTAAAATA+CGG | 0.457765 | tig0024656:-62640 | Msa1418980:exon |
| AGGTCATTCTTGACAATCTC+TGG | 0.460118 | tig0024656:-62724 | Msa1418980:CDS |
| CAAAAGTGAGAAACCAAACT+TGG | 0.468557 | tig0024656:+62669 | None:intergenic |
| TCTGCGACAATTGGTACTCC+TGG | 0.472444 | tig0024656:-63681 | Msa1418980:CDS |
| TTCCTTCATGCATAATTGAC+TGG | 0.481208 | tig0024656:-62308 | Msa1418980:three_prime_UTR |
| CAATATCTTCATGATCATGC+TGG | 0.482402 | tig0024656:-63750 | Msa1418980:CDS |
| CGATTACCTGACTACAAATC+CGG | 0.483135 | tig0024656:-63879 | Msa1418980:CDS |
| AACTTTACAAAGTATAATGC+TGG | 0.483313 | tig0024656:-63615 | Msa1418980:CDS |
| CGTGACCTAGAAAAGTTGAA+TGG | 0.484411 | tig0024656:-62904 | Msa1418980:CDS |
| GCCAACATGTGTGGAGTAGC+TGG | 0.487400 | tig0024656:+63638 | None:intergenic |
| AGTACTGAAGCACTGGAACT+TGG | 0.489642 | tig0024656:+63576 | None:intergenic |
| TTCCAATGCCTTTGTTTCGA+AGG | 0.490558 | tig0024656:+62699 | None:intergenic |
| TGCCTTCGAAACAAAGGCAT+TGG | 0.498230 | tig0024656:-62701 | Msa1418980:CDS |
| TTACAAAAGTACTGAAGCAC+TGG | 0.498266 | tig0024656:+63569 | None:intergenic |
| TGCATGAAGGAAGCAACGGC+TGG | 0.508329 | tig0024656:+62319 | None:intergenic |
| TATCCTAATTGAAAACTAGT+TGG | 0.508614 | tig0024656:-62428 | Msa1418980:three_prime_UTR |
| ACGCAAGTACGATACCTTCA+TGG | 0.512055 | tig0024656:+62924 | None:intergenic |
| GTGACCTAGAAAAGTTGAAT+GGG | 0.513987 | tig0024656:-62903 | Msa1418980:CDS |
| TACAAATGAGAACACGTTGA+CGG | 0.515648 | tig0024656:-62845 | Msa1418980:CDS |
| CCTAATTGAAAACTAGTTGG+TGG | 0.517706 | tig0024656:-62425 | Msa1418980:three_prime_UTR |
| CCAATATCGGAGAAGAGGCC+AGG | 0.522813 | tig0024656:+64750 | None:intergenic |
| ATCTCCTCCTCCACCAACTC+CGG | 0.528597 | tig0024656:-64558 | Msa1418980:CDS |
| GACGGTTGGATGTTCTTATG+TGG | 0.530136 | tig0024656:-62827 | Msa1418980:CDS |
| GAGACCGGAGTTGGTGGAGG+AGG | 0.531862 | tig0024656:+64554 | None:intergenic |
| GGAGTTGGTGGAGGAGGAGA+TGG | 0.535242 | tig0024656:+64560 | None:intergenic |
| CTCTGGTGCCTTCGAAACAA+AGG | 0.537828 | tig0024656:-62707 | Msa1418980:CDS |
| CTACATTATTGAAGAGTAGA+GGG | 0.548508 | tig0024656:-64429 | Msa1418980:CDS |
| TCTGCTCCAAACGCAATACC+AGG | 0.563089 | tig0024656:+63663 | None:intergenic |
| ATCCAGTCAATTATGCATGA+AGG | 0.563457 | tig0024656:+62306 | None:intergenic |
| AATGAGAACACGTTGACGGT+TGG | 0.566215 | tig0024656:-62841 | Msa1418980:CDS |
| TCTACATTATTGAAGAGTAG+AGG | 0.566741 | tig0024656:-64430 | Msa1418980:CDS |
| TAAATCATACACAGTGACAA+TGG | 0.574202 | tig0024656:+62465 | None:intergenic |
| AAAGTAATTACTTACGAGAC+CGG | 0.576236 | tig0024656:+64539 | None:intergenic |
| ATTACTTACGAGACCGGAGT+TGG | 0.577626 | tig0024656:+64545 | None:intergenic |
| TACGAGACCGGAGTTGGTGG+AGG | 0.578933 | tig0024656:+64551 | None:intergenic |
| ACTTACGAGACCGGAGTTGG+TGG | 0.580927 | tig0024656:+64548 | None:intergenic |
| GAAGCAAGAACTTTCGCAGA+AGG | 0.589015 | tig0024656:+63906 | None:intergenic |
| ACCAGCTACTCCACACATGT+TGG | 0.594917 | tig0024656:-63639 | Msa1418980:CDS |
| TGATCCTCAAACAACTGTGA+AGG | 0.605878 | tig0024656:-62803 | Msa1418980:CDS |
| GAACAACCATGGCAATCTTG+AGG | 0.623026 | tig0024656:-62773 | Msa1418980:CDS |
| ACAATGTCTTCCAAAGGACC+TGG | 0.623080 | tig0024656:-64768 | Msa1418980:CDS |
| TGTAAAGTTGCCAACATGTG+TGG | 0.636487 | tig0024656:+63629 | None:intergenic |
| TTGTGGGAGAAATTAGCAGA+AGG | 0.636698 | tig0024656:-62873 | Msa1418980:CDS |
| GAAACAACAATGTCTTCCAA+AGG | 0.636707 | tig0024656:-64774 | None:intergenic |
| AAAAGTGAGAAACCAAACTT+GGG | 0.644483 | tig0024656:+62670 | None:intergenic |
| TGACCTAGAAAAGTTGAATG+GGG | 0.648872 | tig0024656:-62902 | Msa1418980:CDS |
| ATTATGCATGAAGGAAGCAA+CGG | 0.651364 | tig0024656:+62315 | None:intergenic |
| AAGGCAAAGCTGAACAACCA+TGG | 0.652579 | tig0024656:-62784 | Msa1418980:CDS |
| ACCTGACTACAAATCCGGCA+AGG | 0.666565 | tig0024656:-63874 | Msa1418980:intron |
| ATACAGCCTCAAGATTGCCA+TGG | 0.667511 | tig0024656:+62767 | None:intergenic |
| TGACAAGGGAGACTCCATGA+AGG | 0.670618 | tig0024656:-62938 | Msa1418980:CDS |
| GACCTAGAAAAGTTGAATGG+GGG | 0.671119 | tig0024656:-62901 | Msa1418980:CDS |
| TGCAACATCATCTTACACAT+AGG | 0.672932 | tig0024656:-62744 | Msa1418980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTTACTTGGAT+GGG | - | tig0024656:63899-63918 | Msa1418980:CDS | 15.0% |
| !! | GAAAAAAAAACTGAGAAAAT+TGG | + | tig0024656:62392-62411 | None:intergenic | 20.0% |
| !! | ATTAATTACTACTAAACTTG+CGG | + | tig0024656:62569-62588 | None:intergenic | 20.0% |
| !! | TTATTGCTAATCATAATTTC+AGG | - | tig0024656:62601-62620 | Msa1418980:three_prime_UTR | 20.0% |
| !! | TATAAGCTATATTGTAAAAC+TGG | - | tig0024656:62900-62919 | Msa1418980:CDS | 20.0% |
| !!! | ATTCTAAAATCCTACATTTT+CGG | + | tig0024656:63252-63271 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTTATTTAGATTG+AGG | - | tig0024656:63287-63306 | Msa1418980:intron | 20.0% |
| !!! | TGACCATTTTTATTTTTACT+TGG | - | tig0024656:63894-63913 | Msa1418980:CDS | 20.0% |
| !! | CATCCAAGTAAAAATAAAAA+TGG | + | tig0024656:63900-63919 | None:intergenic | 20.0% |
| !!! | CATTTTTATTTTTACTTGGA+TGG | - | tig0024656:63898-63917 | Msa1418980:CDS | 20.0% |
| !! | TCAATCATTTGAAGAAAAAA+GGG | + | tig0024656:64550-64569 | None:intergenic | 20.0% |
| !! | ATCAATCATTTGAAGAAAAA+AGG | + | tig0024656:64551-64570 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCAAATGATTGAT+TGG | - | tig0024656:64551-64570 | Msa1418980:intron | 20.0% |
| !! | TTCAATTAGGATATTATCAA+TGG | + | tig0024656:64627-64646 | None:intergenic | 20.0% |
| !! | ATTACAGTTCAGGTTATTAT+CGG | + | tig0024656:62785-62804 | None:intergenic | 25.0% |
| ! | TATGAAAATAAGCTGAAAAC+AGG | - | tig0024656:62929-62948 | Msa1418980:CDS | 25.0% |
| ! | AAATCAATTAAAAGCCTGTT+TGG | + | tig0024656:63042-63061 | None:intergenic | 25.0% |
| ! | ATTGTTTGGTATATGAAGAT+TGG | - | tig0024656:63219-63238 | Msa1418980:intron | 25.0% |
| ! | AACTTTACAAAGTATAATGC+TGG | - | tig0024656:63447-63466 | Msa1418980:intron | 25.0% |
| !!! | ACATCATGTCATTTTGATTT+AGG | + | tig0024656:63707-63726 | None:intergenic | 25.0% |
| !! | AAGAATAAAAAGCACATTGT+AGG | - | tig0024656:63762-63781 | Msa1418980:CDS | 25.0% |
| ! | TTGACATTGCACAATAATTA+AGG | + | tig0024656:64061-64080 | None:intergenic | 25.0% |
| !! | TAAGTTACTGTCACATTTTT+CGG | - | tig0024656:64454-64473 | Msa1418980:intron | 25.0% |
| ! | ACGAAATTGATATCAATTGT+TGG | - | tig0024656:64507-64526 | Msa1418980:intron | 25.0% |
| ! | TATCCTAATTGAAAACTAGT+TGG | - | tig0024656:64634-64653 | Msa1418980:intron | 25.0% |
| !!! | TCTGGATTTTTTGCCAATAT+CGG | + | tig0024656:62328-62347 | None:intergenic | 30.0% |
| AAAGTAATTACTTACGAGAC+CGG | + | tig0024656:62526-62545 | None:intergenic | 30.0% | |
| TACTAAACTTGCGGTAAAAA+AGG | + | tig0024656:62560-62579 | None:intergenic | 30.0% | |
| TCTACATTATTGAAGAGTAG+AGG | - | tig0024656:62632-62651 | Msa1418980:three_prime_UTR | 30.0% | |
| CTACATTATTGAAGAGTAGA+GGG | - | tig0024656:62633-62652 | Msa1418980:three_prime_UTR | 30.0% | |
| ! | ATACCTTCAATCAAAAGTGT+CGG | - | tig0024656:62830-62849 | Msa1418980:CDS | 30.0% |
| TGGTATATGAAGATTGGATT+TGG | - | tig0024656:63225-63244 | Msa1418980:intron | 30.0% | |
| !! | ATTGATTTTTCTGCGACAAT+TGG | - | tig0024656:63372-63391 | Msa1418980:intron | 30.0% |
| ! | AGTACTTTTGTAAGTAACTG+AGG | - | tig0024656:63503-63522 | Msa1418980:intron | 30.0% |
| TCCAGATTCATATTGTGAAT+CGG | - | tig0024656:63539-63558 | Msa1418980:intron | 30.0% | |
| ! | AATAAAAAGCACATTGTAGG+AGG | - | tig0024656:63765-63784 | Msa1418980:intron | 30.0% |
| AAAAGTGAGAAACCAAACTT+GGG | + | tig0024656:64395-64414 | None:intergenic | 30.0% | |
| !! | GATATCAATTGTTGGTTTCA+TGG | - | tig0024656:64515-64534 | Msa1418980:intron | 30.0% |
| TCTTCAAATGATTGATTGGT+TGG | - | tig0024656:64555-64574 | Msa1418980:CDS | 30.0% | |
| TAAATCATACACAGTGACAA+TGG | + | tig0024656:64600-64619 | None:intergenic | 30.0% | |
| CATAAGTTACACAGAATACT+TGG | + | tig0024656:64695-64714 | None:intergenic | 30.0% | |
| GATATTGGCAAAAAATCCAG+AGG | - | tig0024656:62327-62346 | Msa1418980:three_prime_UTR | 35.0% | |
| TTATCTTTCCGATTCCGATT+TGG | - | tig0024656:62415-62434 | Msa1418980:three_prime_UTR | 35.0% | |
| ! | TTTTGTGAGAATATCTGCGA+CGG | + | tig0024656:62457-62476 | None:intergenic | 35.0% |
| GCTCTCTCTATCTTCTATTT+CGG | - | tig0024656:62738-62757 | Msa1418980:CDS | 35.0% | |
| !! | TAACCGACACTTTTGATTGA+AGG | + | tig0024656:62836-62855 | None:intergenic | 35.0% |
| ATGAGTTTCATATCACTGCA+TGG | + | tig0024656:62991-63010 | None:intergenic | 35.0% | |
| TCAAATAAGCTGATCCAAAC+AGG | - | tig0024656:63025-63044 | Msa1418980:intron | 35.0% | |
| GTAATCCATGTATGTTCTTC+AGG | - | tig0024656:63101-63120 | Msa1418980:intron | 35.0% | |
| CAATATCTTCATGATCATGC+TGG | - | tig0024656:63312-63331 | Msa1418980:intron | 35.0% | |
| !! | TTACAAAAGTACTGAAGCAC+TGG | + | tig0024656:63496-63515 | None:intergenic | 35.0% |
| TCCGATTCACAATATGAATC+TGG | + | tig0024656:63543-63562 | None:intergenic | 35.0% | |
| !!! | TTTTAAGTCATTGCCGACTT+TGG | - | tig0024656:63965-63984 | Msa1418980:intron | 35.0% |
| TTCGATAAGTCTTCCAAAGT+CGG | + | tig0024656:63981-64000 | None:intergenic | 35.0% | |
| ! | CGAATAACTGTTACTTGTGT+CGG | - | tig0024656:63997-64016 | Msa1418980:intron | 35.0% |
| !!! | TCATTTTTTCAGAGCTGACA+AGG | - | tig0024656:64109-64128 | Msa1418980:intron | 35.0% |
| !!! | CATTTTTTCAGAGCTGACAA+GGG | - | tig0024656:64110-64129 | Msa1418980:intron | 35.0% |
| GTGACCTAGAAAAGTTGAAT+GGG | - | tig0024656:64159-64178 | Msa1418980:intron | 35.0% | |
| TGACCTAGAAAAGTTGAATG+GGG | - | tig0024656:64160-64179 | Msa1418980:intron | 35.0% | |
| TACAAATGAGAACACGTTGA+CGG | - | tig0024656:64217-64236 | Msa1418980:intron | 35.0% | |
| TGCAACATCATCTTACACAT+AGG | - | tig0024656:64318-64337 | Msa1418980:intron | 35.0% | |
| TTGGAAAATAGTCCCAAGTT+TGG | - | tig0024656:64380-64399 | Msa1418980:CDS | 35.0% | |
| CAAAAGTGAGAAACCAAACT+TGG | + | tig0024656:64396-64415 | None:intergenic | 35.0% | |
| ! | CCTTAGAGGGGTTTAAAATA+CGG | - | tig0024656:64422-64441 | Msa1418980:CDS | 35.0% |
| !!! | CCACCAACTAGTTTTCAATT+AGG | + | tig0024656:64640-64659 | None:intergenic | 35.0% |
| CCTAATTGAAAACTAGTTGG+TGG | - | tig0024656:64637-64656 | Msa1418980:intron | 35.0% | |
| ATTATGCATGAAGGAAGCAA+CGG | + | tig0024656:64750-64769 | None:intergenic | 35.0% | |
| TTCCTTCATGCATAATTGAC+TGG | - | tig0024656:64754-64773 | Msa1418980:CDS | 35.0% | |
| ATCCAGTCAATTATGCATGA+AGG | + | tig0024656:64759-64778 | None:intergenic | 35.0% | |
| ! | TTTTGCCAATATCGGAGAAG+AGG | + | tig0024656:62320-62339 | None:intergenic | 40.0% |
| TCGGAAAACCAAATCGGAAT+CGG | + | tig0024656:62426-62445 | None:intergenic | 40.0% | |
| TCGAGATCGGAAAACCAAAT+CGG | + | tig0024656:62432-62451 | None:intergenic | 40.0% | |
| ! | GGAGATGGTGAGTTTTTGAT+CGG | + | tig0024656:62490-62509 | None:intergenic | 40.0% |
| ! | AGTTCAGGTTATTATCGGTG+TGG | + | tig0024656:62780-62799 | None:intergenic | 40.0% |
| GAAGCATGTGATTACAGTTC+AGG | + | tig0024656:62795-62814 | None:intergenic | 40.0% | |
| AAGGTATGTACAACACGTCA+CGG | + | tig0024656:62817-62836 | None:intergenic | 40.0% | |
| CAACACCTGAAGAACATACA+TGG | + | tig0024656:63109-63128 | None:intergenic | 40.0% | |
| CGATTACCTGACTACAAATC+CGG | - | tig0024656:63183-63202 | Msa1418980:intron | 40.0% | |
| ! | TACAAATCCGGCAAGGTATT+AGG | - | tig0024656:63195-63214 | Msa1418980:intron | 40.0% |
| ! | ACAAATCCGGCAAGGTATTA+GGG | - | tig0024656:63196-63215 | Msa1418980:intron | 40.0% |
| AACAATCCCTAATACCTTGC+CGG | + | tig0024656:63205-63224 | None:intergenic | 40.0% | |
| ! | GCAAGGTATTAGGGATTGTT+TGG | - | tig0024656:63205-63224 | Msa1418980:intron | 40.0% |
| TGGATTTGGACCGAAAATGT+AGG | - | tig0024656:63239-63258 | Msa1418980:intron | 40.0% | |
| GTCGCAGAAAAATCAATAGC+AGG | + | tig0024656:63369-63388 | None:intergenic | 40.0% | |
| TGTAAAGTTGCCAACATGTG+TGG | + | tig0024656:63436-63455 | None:intergenic | 40.0% | |
| AACACTGCACAATACACTGT+AGG | - | tig0024656:63735-63754 | Msa1418980:CDS | 40.0% | |
| TTGCACAATAATTAAGGCCC+CGG | + | tig0024656:64055-64074 | None:intergenic | 40.0% | |
| CGTGACCTAGAAAAGTTGAA+TGG | - | tig0024656:64158-64177 | Msa1418980:intron | 40.0% | |
| GACCTAGAAAAGTTGAATGG+GGG | - | tig0024656:64161-64180 | Msa1418980:intron | 40.0% | |
| TTGTGGGAGAAATTAGCAGA+AGG | - | tig0024656:64189-64208 | Msa1418980:intron | 40.0% | |
| TGATCCTCAAACAACTGTGA+AGG | - | tig0024656:64259-64278 | Msa1418980:intron | 40.0% | |
| TTTGCCTTCACAGTTGTTTG+AGG | + | tig0024656:64266-64285 | None:intergenic | 40.0% | |
| AGGTCATTCTTGACAATCTC+TGG | - | tig0024656:64338-64357 | Msa1418980:intron | 40.0% | |
| ! | TTCCAATGCCTTTGTTTCGA+AGG | + | tig0024656:64366-64385 | None:intergenic | 40.0% |
| ! | ACTTTTGCTCAAGCCTTAGA+GGG | - | tig0024656:64409-64428 | Msa1418980:CDS | 40.0% |
| !! | CCGTATTTTAAACCCCTCTA+AGG | + | tig0024656:64425-64444 | None:intergenic | 40.0% |
| AAGAGAGTGAGTGTTACCTC+TGG | + | tig0024656:62346-62365 | None:intergenic | 45.0% | |
| ATTACTTACGAGACCGGAGT+TGG | + | tig0024656:62520-62539 | None:intergenic | 45.0% | |
| GAAGCAAGAACTTTCGCAGA+AGG | + | tig0024656:63159-63178 | None:intergenic | 45.0% | |
| !! | AGTACTGAAGCACTGGAACT+TGG | + | tig0024656:63489-63508 | None:intergenic | 45.0% |
| CTGCACAATACACTGTAGGA+AGG | - | tig0024656:63739-63758 | Msa1418980:CDS | 45.0% | |
| TGGATGGGATGTTCTTTCTC+TGG | - | tig0024656:63914-63933 | Msa1418980:CDS | 45.0% | |
| ACGCAAGTACGATACCTTCA+TGG | + | tig0024656:64141-64160 | None:intergenic | 45.0% | |
| ! | CTCCCCCATTCAACTTTTCT+AGG | + | tig0024656:64166-64185 | None:intergenic | 45.0% |
| AATGAGAACACGTTGACGGT+TGG | - | tig0024656:64221-64240 | Msa1418980:intron | 45.0% | |
| GACGGTTGGATGTTCTTATG+TGG | - | tig0024656:64235-64254 | Msa1418980:intron | 45.0% | |
| AAGGCAAAGCTGAACAACCA+TGG | - | tig0024656:64278-64297 | Msa1418980:intron | 45.0% | |
| GAACAACCATGGCAATCTTG+AGG | - | tig0024656:64289-64308 | Msa1418980:intron | 45.0% | |
| ATACAGCCTCAAGATTGCCA+TGG | + | tig0024656:64298-64317 | None:intergenic | 45.0% | |
| ! | TGCCTTCGAAACAAAGGCAT+TGG | - | tig0024656:64361-64380 | Msa1418980:CDS | 45.0% |
| ! | CACTTTTGCTCAAGCCTTAG+AGG | - | tig0024656:64408-64427 | Msa1418980:CDS | 45.0% |
| ! | CTTTTGCTCAAGCCTTAGAG+GGG | - | tig0024656:64410-64429 | Msa1418980:CDS | 45.0% |
| ATCTGCGACGGAATCGAGAT+CGG | + | tig0024656:62445-62464 | None:intergenic | 50.0% | |
| AAGAGTAGAGGGCTCTCTTC+TGG | - | tig0024656:62644-62663 | Msa1418980:exon | 50.0% | |
| ACCTGACTACAAATCCGGCA+AGG | - | tig0024656:63188-63207 | Msa1418980:intron | 50.0% | |
| ACCTTGCCGGATTTGTAGTC+AGG | + | tig0024656:63192-63211 | None:intergenic | 50.0% | |
| !!! | TGCTGGTTTTACTGCTGCTG+TGG | - | tig0024656:63329-63348 | Msa1418980:intron | 50.0% |
| TCTGCGACAATTGGTACTCC+TGG | - | tig0024656:63381-63400 | Msa1418980:intron | 50.0% | |
| GGTACTCCTGGTATTGCGTT+TGG | - | tig0024656:63393-63412 | Msa1418980:intron | 50.0% | |
| TCTGCTCCAAACGCAATACC+AGG | + | tig0024656:63402-63421 | None:intergenic | 50.0% | |
| ACCAGCTACTCCACACATGT+TGG | - | tig0024656:63423-63442 | Msa1418980:intron | 50.0% | |
| AAGCACATTGTAGGAGGCAG+TGG | - | tig0024656:63771-63790 | Msa1418980:intron | 50.0% | |
| AGCACATTGTAGGAGGCAGT+GGG | - | tig0024656:63772-63791 | Msa1418980:intron | 50.0% | |
| ! | ACCAAAAGCGCAGTGTGCAA+GGG | - | tig0024656:63796-63815 | Msa1418980:intron | 50.0% |
| TACCGAGCCCTGCAAATTTC+CGG | - | tig0024656:64033-64052 | Msa1418980:intron | 50.0% | |
| TAAGGCCCCGGAAATTTGCA+GGG | + | tig0024656:64043-64062 | None:intergenic | 50.0% | |
| TTAAGGCCCCGGAAATTTGC+AGG | + | tig0024656:64044-64063 | None:intergenic | 50.0% | |
| TGACAAGGGAGACTCCATGA+AGG | - | tig0024656:64124-64143 | Msa1418980:intron | 50.0% | |
| TTGAATGGGGGAGCTGTTGT+GGG | - | tig0024656:64173-64192 | Msa1418980:intron | 50.0% | |
| CTCTGGTGCCTTCGAAACAA+AGG | - | tig0024656:64355-64374 | Msa1418980:CDS | 50.0% | |
| CCAATATCGGAGAAGAGGCC+AGG | + | tig0024656:62315-62334 | None:intergenic | 55.0% | |
| CCTGGCCTCTTCTCCGATAT+TGG | - | tig0024656:62312-62331 | Msa1418980:three_prime_UTR | 55.0% | |
| ATCTCCTCCTCCACCAACTC+CGG | - | tig0024656:62504-62523 | Msa1418980:three_prime_UTR | 55.0% | |
| ACTTACGAGACCGGAGTTGG+TGG | + | tig0024656:62517-62536 | None:intergenic | 55.0% | |
| GCCAACATGTGTGGAGTAGC+TGG | + | tig0024656:63427-63446 | None:intergenic | 55.0% | |
| GCACATTGTAGGAGGCAGTG+GGG | - | tig0024656:63773-63792 | Msa1418980:intron | 55.0% | |
| ! | GACCAAAAGCGCAGTGTGCA+AGG | - | tig0024656:63795-63814 | Msa1418980:intron | 55.0% |
| AGTGTGCAAGGGCTCTTCAG+TGG | - | tig0024656:63807-63826 | Msa1418980:intron | 55.0% | |
| ACCGAGCCCTGCAAATTTCC+GGG | - | tig0024656:64034-64053 | Msa1418980:intron | 55.0% | |
| GTTGAATGGGGGAGCTGTTG+TGG | - | tig0024656:64172-64191 | Msa1418980:intron | 55.0% | |
| TGCATGAAGGAAGCAACGGC+TGG | + | tig0024656:64746-64765 | None:intergenic | 55.0% | |
| GGAGAAGAGGCCAGGTCCTT+TGG | + | tig0024656:62307-62326 | None:intergenic | 60.0% | |
| !! | GGAGTTGGTGGAGGAGGAGA+TGG | + | tig0024656:62505-62524 | None:intergenic | 60.0% |
| !! | TACGAGACCGGAGTTGGTGG+AGG | + | tig0024656:62514-62533 | None:intergenic | 60.0% |
| GGTGTGGACGTGTCAGTGAG+AGG | + | tig0024656:62764-62783 | None:intergenic | 60.0% | |
| ! | GCCCTTGCACACTGCGCTTT+TGG | + | tig0024656:63800-63819 | None:intergenic | 60.0% |
| CCCCGGAAATTTGCAGGGCT+CGG | + | tig0024656:64038-64057 | None:intergenic | 60.0% | |
| CCGAGCCCTGCAAATTTCCG+GGG | - | tig0024656:64035-64054 | Msa1418980:intron | 60.0% | |
| !! | GAGACCGGAGTTGGTGGAGG+AGG | + | tig0024656:62511-62530 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024656 | gene | 62297 | 64787 | 62297 | ID=Msa1418980;Name=Msa1418980 |
| tig0024656 | mRNA | 62297 | 64787 | 62297 | ID=Msa1418980-mRNA-1;Parent=Msa1418980;Name=Msa1418980-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.83|1|1|1|6|360|277 |
| tig0024656 | exon | 62297 | 62963 | 62297 | ID=Msa1418980-mRNA-1:exon:693;Parent=Msa1418980-mRNA-1 |
| tig0024656 | exon | 63573 | 63781 | 63573 | ID=Msa1418980-mRNA-1:exon:692;Parent=Msa1418980-mRNA-1 |
| tig0024656 | exon | 63875 | 63961 | 63875 | ID=Msa1418980-mRNA-1:exon:691;Parent=Msa1418980-mRNA-1 |
| tig0024656 | exon | 64351 | 64461 | 64351 | ID=Msa1418980-mRNA-1:exon:690;Parent=Msa1418980-mRNA-1 |
| tig0024656 | exon | 64554 | 64621 | 64554 | ID=Msa1418980-mRNA-1:exon:689;Parent=Msa1418980-mRNA-1 |
| tig0024656 | exon | 64736 | 64787 | 64736 | ID=Msa1418980-mRNA-1:exon:688;Parent=Msa1418980-mRNA-1 |
| tig0024656 | CDS | 64736 | 64787 | 64736 | ID=Msa1418980-mRNA-1:cds;Parent=Msa1418980-mRNA-1 |
| tig0024656 | CDS | 64554 | 64621 | 64554 | ID=Msa1418980-mRNA-1:cds;Parent=Msa1418980-mRNA-1 |
| tig0024656 | CDS | 64351 | 64461 | 64351 | ID=Msa1418980-mRNA-1:cds;Parent=Msa1418980-mRNA-1 |
| tig0024656 | CDS | 63875 | 63961 | 63875 | ID=Msa1418980-mRNA-1:cds;Parent=Msa1418980-mRNA-1 |
| tig0024656 | CDS | 63573 | 63781 | 63573 | ID=Msa1418980-mRNA-1:cds;Parent=Msa1418980-mRNA-1 |
| tig0024656 | CDS | 62657 | 62963 | 62657 | ID=Msa1418980-mRNA-1:cds;Parent=Msa1418980-mRNA-1 |
| tig0024656 | three_prime_UTR | 62297 | 62656 | 62297 | ID=Msa1418980-mRNA-1:three_prime_utr;Parent=Msa1418980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
