Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097380 | sp|Q9FJX3|VDAC2_ARATH | 55.273 | 275 | 123 | 0 | 3 | 277 | 2 | 276 | 1.87e-107 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097380 | A0A072VEI7 | 98.195 | 277 | 5 | 0 | 1 | 277 | 1 | 277 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018050 | Msa0097380 | 0.985015 | 2.848939e-162 | -8.615850e-47 |
| Msa0052370 | Msa0097380 | 0.893541 | 5.710920e-75 | -8.615850e-47 |
| Msa0080510 | Msa0097380 | 0.811062 | 8.447152e-51 | -8.615850e-47 |
| Msa0097380 | Msa0659050 | 0.803674 | 3.115075e-49 | -8.615850e-47 |
| Msa0097380 | Msa1211820 | 0.835383 | 1.732960e-56 | -8.615850e-47 |
| Msa0097380 | Msa1299690 | 0.811454 | 6.945839e-51 | -8.615850e-47 |
| Msa0097380 | Msa1332230 | 0.825170 | 5.423570e-54 | -8.615850e-47 |
| Msa0097380 | Msa1418980 | 0.995726 | 3.087636e-219 | -8.615850e-47 |
| Msa0097380 | Msa1433590 | 0.854829 | 9.485451e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097380 | MtrunA17_Chr1g0152591 | 98.195 | 277 | 5 | 0 | 1 | 277 | 1 | 277 | 0.0 | 549 |
| Msa0097380 | MtrunA17_Chr5g0401201 | 56.364 | 275 | 120 | 0 | 3 | 277 | 2 | 276 | 3.77e-111 | 322 |
| Msa0097380 | MtrunA17_Chr6g0452811 | 44.765 | 277 | 151 | 1 | 3 | 277 | 2 | 278 | 6.49e-77 | 235 |
| Msa0097380 | MtrunA17_Chr7g0216561 | 41.516 | 277 | 162 | 0 | 1 | 277 | 1 | 277 | 4.09e-74 | 228 |
| Msa0097380 | MtrunA17_Chr8g0362621 | 38.686 | 274 | 168 | 0 | 4 | 277 | 3 | 276 | 5.89e-67 | 209 |
| Msa0097380 | MtrunA17_Chr4g0072511 | 39.568 | 278 | 165 | 2 | 3 | 277 | 2 | 279 | 2.43e-65 | 205 |
| Msa0097380 | MtrunA17_Chr4g0060181 | 24.823 | 282 | 166 | 6 | 3 | 277 | 2 | 244 | 2.10e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097380 | AT5G67500.3 | 55.273 | 275 | 123 | 0 | 3 | 277 | 2 | 276 | 1.90e-108 | 315 |
| Msa0097380 | AT5G67500.1 | 54.511 | 266 | 121 | 0 | 3 | 268 | 2 | 267 | 1.81e-102 | 301 |
| Msa0097380 | AT5G67500.2 | 50.331 | 302 | 123 | 1 | 3 | 277 | 2 | 303 | 3.97e-102 | 300 |
| Msa0097380 | AT5G15090.1 | 43.273 | 275 | 152 | 2 | 4 | 277 | 3 | 274 | 1.50e-77 | 237 |
| Msa0097380 | AT5G15090.2 | 43.273 | 275 | 152 | 2 | 4 | 277 | 3 | 274 | 1.50e-77 | 237 |
| Msa0097380 | AT3G01280.1 | 42.701 | 274 | 157 | 0 | 4 | 277 | 3 | 276 | 4.17e-72 | 223 |
| Msa0097380 | AT5G57490.1 | 38.235 | 272 | 166 | 1 | 6 | 277 | 5 | 274 | 2.53e-63 | 200 |
| Msa0097380 | AT3G49920.1 | 39.273 | 275 | 117 | 3 | 3 | 277 | 2 | 226 | 1.35e-54 | 176 |
| Msa0097380 | AT3G49920.2 | 51.220 | 82 | 40 | 0 | 3 | 84 | 2 | 83 | 3.32e-21 | 87.0 |
| Msa0097380 | AT3G49920.4 | 51.220 | 82 | 40 | 0 | 3 | 84 | 2 | 83 | 3.32e-21 | 87.0 |
| Msa0097380 | AT3G49920.3 | 51.316 | 76 | 37 | 0 | 3 | 78 | 2 | 77 | 2.19e-19 | 81.6 |
Find 67 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGTAGAGGGCTCTCTTC+TGG | 0.287936 | 1_3:-3193965 | Msa0097380:CDS |
| GATATCAATTGTTGGTTTCA+TGG | 0.308943 | 1_3:-3192094 | Msa0097380:three_prime_UTR |
| CCTGGCCTCTTCTCCGATAT+TGG | 0.316875 | 1_3:-3194297 | Msa0097380:CDS |
| GGAGAAGAGGCCAGGTCCTT+TGG | 0.352368 | 1_3:+3194305 | None:intergenic |
| GGTACTCCTGGTATTGCGTT+TGG | 0.355399 | 1_3:-3193216 | Msa0097380:CDS |
| TTTGCCTTCACAGTTGTTTG+AGG | 0.384553 | 1_3:+3192346 | None:intergenic |
| AACAATCCCTAATACCTTGC+CGG | 0.385911 | 1_3:+3193407 | None:intergenic |
| TTCAATTAGGATATTATCAA+TGG | 0.399059 | 1_3:+3191985 | None:intergenic |
| TCTTCAAATGATTGATTGGT+TGG | 0.403323 | 1_3:-3192054 | Msa0097380:three_prime_UTR |
| TTGGAAAATAGTCCCAAGTT+TGG | 0.403788 | 1_3:-3192229 | Msa0097380:CDS |
| ACGAAATTGATATCAATTGT+TGG | 0.404102 | 1_3:-3192102 | Msa0097380:three_prime_UTR |
| ATTGACTGGATATATTTAGA+AGG | 0.419120 | 1_3:-3191841 | None:intergenic |
| ACCTTGCCGGATTTGTAGTC+AGG | 0.424993 | 1_3:+3193420 | None:intergenic |
| CATAAGTTACACAGAATACT+TGG | 0.435455 | 1_3:+3191917 | None:intergenic |
| CCTTAGAGGGGTTTAAAATA+CGG | 0.457765 | 1_3:-3192187 | Msa0097380:exon |
| AGGTCATTCTTGACAATCTC+TGG | 0.460118 | 1_3:-3192271 | Msa0097380:CDS |
| CAAAAGTGAGAAACCAAACT+TGG | 0.468557 | 1_3:+3192216 | None:intergenic |
| TCTGCGACAATTGGTACTCC+TGG | 0.472444 | 1_3:-3193228 | Msa0097380:CDS |
| TTCCTTCATGCATAATTGAC+TGG | 0.481208 | 1_3:-3191855 | Msa0097380:three_prime_UTR |
| CAATATCTTCATGATCATGC+TGG | 0.482402 | 1_3:-3193297 | Msa0097380:CDS |
| CGATTACCTGACTACAAATC+CGG | 0.483135 | 1_3:-3193426 | Msa0097380:CDS |
| AACTTTACAAAGTATAATGC+TGG | 0.483313 | 1_3:-3193162 | Msa0097380:CDS |
| CGTGACCTAGAAAAGTTGAA+TGG | 0.484411 | 1_3:-3192451 | Msa0097380:CDS |
| GCCAACATGTGTGGAGTAGC+TGG | 0.487400 | 1_3:+3193185 | None:intergenic |
| AGTACTGAAGCACTGGAACT+TGG | 0.489642 | 1_3:+3193123 | None:intergenic |
| TTCCAATGCCTTTGTTTCGA+AGG | 0.490558 | 1_3:+3192246 | None:intergenic |
| TGCCTTCGAAACAAAGGCAT+TGG | 0.498230 | 1_3:-3192248 | Msa0097380:CDS |
| TTACAAAAGTACTGAAGCAC+TGG | 0.498266 | 1_3:+3193116 | None:intergenic |
| TGCATGAAGGAAGCAACGGC+TGG | 0.508329 | 1_3:+3191866 | None:intergenic |
| TATCCTAATTGAAAACTAGT+TGG | 0.508614 | 1_3:-3191975 | Msa0097380:three_prime_UTR |
| ACGCAAGTACGATACCTTCA+TGG | 0.512055 | 1_3:+3192471 | None:intergenic |
| GTGACCTAGAAAAGTTGAAT+GGG | 0.513987 | 1_3:-3192450 | Msa0097380:CDS |
| TACAAATGAGAACACGTTGA+CGG | 0.515648 | 1_3:-3192392 | Msa0097380:CDS |
| CCTAATTGAAAACTAGTTGG+TGG | 0.517706 | 1_3:-3191972 | Msa0097380:three_prime_UTR |
| CCAATATCGGAGAAGAGGCC+AGG | 0.522813 | 1_3:+3194297 | None:intergenic |
| ATCTCCTCCTCCACCAACTC+CGG | 0.528597 | 1_3:-3194105 | Msa0097380:CDS |
| GACGGTTGGATGTTCTTATG+TGG | 0.530136 | 1_3:-3192374 | Msa0097380:CDS |
| GAGACCGGAGTTGGTGGAGG+AGG | 0.531862 | 1_3:+3194101 | None:intergenic |
| GGAGTTGGTGGAGGAGGAGA+TGG | 0.535242 | 1_3:+3194107 | None:intergenic |
| CTCTGGTGCCTTCGAAACAA+AGG | 0.537828 | 1_3:-3192254 | Msa0097380:CDS |
| CTACATTATTGAAGAGTAGA+GGG | 0.548508 | 1_3:-3193976 | Msa0097380:CDS |
| TCTGCTCCAAACGCAATACC+AGG | 0.563089 | 1_3:+3193210 | None:intergenic |
| ATCCAGTCAATTATGCATGA+AGG | 0.563457 | 1_3:+3191853 | None:intergenic |
| AATGAGAACACGTTGACGGT+TGG | 0.566215 | 1_3:-3192388 | Msa0097380:CDS |
| TCTACATTATTGAAGAGTAG+AGG | 0.566741 | 1_3:-3193977 | Msa0097380:CDS |
| TAAATCATACACAGTGACAA+TGG | 0.574202 | 1_3:+3192012 | None:intergenic |
| AAAGTAATTACTTACGAGAC+CGG | 0.576236 | 1_3:+3194086 | None:intergenic |
| ATTACTTACGAGACCGGAGT+TGG | 0.577626 | 1_3:+3194092 | None:intergenic |
| TACGAGACCGGAGTTGGTGG+AGG | 0.578933 | 1_3:+3194098 | None:intergenic |
| ACTTACGAGACCGGAGTTGG+TGG | 0.580927 | 1_3:+3194095 | None:intergenic |
| GAAGCAAGAACTTTCGCAGA+AGG | 0.589015 | 1_3:+3193453 | None:intergenic |
| ACCAGCTACTCCACACATGT+TGG | 0.594917 | 1_3:-3193186 | Msa0097380:CDS |
| TGATCCTCAAACAACTGTGA+AGG | 0.605878 | 1_3:-3192350 | Msa0097380:CDS |
| GAACAACCATGGCAATCTTG+AGG | 0.623026 | 1_3:-3192320 | Msa0097380:CDS |
| ACAATGTCTTCCAAAGGACC+TGG | 0.623080 | 1_3:-3194315 | Msa0097380:CDS |
| TGTAAAGTTGCCAACATGTG+TGG | 0.636487 | 1_3:+3193176 | None:intergenic |
| TTGTGGGAGAAATTAGCAGA+AGG | 0.636698 | 1_3:-3192420 | Msa0097380:CDS |
| GAAACAACAATGTCTTCCAA+AGG | 0.636707 | 1_3:-3194321 | None:intergenic |
| AAAAGTGAGAAACCAAACTT+GGG | 0.644483 | 1_3:+3192217 | None:intergenic |
| TGACCTAGAAAAGTTGAATG+GGG | 0.648872 | 1_3:-3192449 | Msa0097380:CDS |
| ATTATGCATGAAGGAAGCAA+CGG | 0.651364 | 1_3:+3191862 | None:intergenic |
| AAGGCAAAGCTGAACAACCA+TGG | 0.652579 | 1_3:-3192331 | Msa0097380:CDS |
| ACCTGACTACAAATCCGGCA+AGG | 0.666565 | 1_3:-3193421 | Msa0097380:intron |
| ATACAGCCTCAAGATTGCCA+TGG | 0.667511 | 1_3:+3192314 | None:intergenic |
| TGACAAGGGAGACTCCATGA+AGG | 0.670618 | 1_3:-3192485 | Msa0097380:CDS |
| GACCTAGAAAAGTTGAATGG+GGG | 0.671119 | 1_3:-3192448 | Msa0097380:CDS |
| TGCAACATCATCTTACACAT+AGG | 0.672932 | 1_3:-3192291 | Msa0097380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTTACTTGGAT+GGG | - | chr1_3:3193446-3193465 | Msa0097380:CDS | 15.0% |
| !! | GAAAAAAAAACTGAGAAAAT+TGG | + | chr1_3:3191939-3191958 | None:intergenic | 20.0% |
| !! | ATTAATTACTACTAAACTTG+CGG | + | chr1_3:3192116-3192135 | None:intergenic | 20.0% |
| !! | TTATTGCTAATCATAATTTC+AGG | - | chr1_3:3192148-3192167 | Msa0097380:three_prime_UTR | 20.0% |
| !!! | ATTACAGTTCAAGTTATTAT+CGG | + | chr1_3:3192332-3192351 | None:intergenic | 20.0% |
| !! | TATAAGCTATATTGTAAAAC+TGG | - | chr1_3:3192447-3192466 | Msa0097380:CDS | 20.0% |
| !!! | ATTCTAAAATCCTACATTTT+CGG | + | chr1_3:3192799-3192818 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTTATTTAGATTG+AGG | - | chr1_3:3192834-3192853 | Msa0097380:intron | 20.0% |
| !!! | TGACCATTTTTATTTTTACT+TGG | - | chr1_3:3193441-3193460 | Msa0097380:CDS | 20.0% |
| !! | CATCCAAGTAAAAATAAAAA+TGG | + | chr1_3:3193447-3193466 | None:intergenic | 20.0% |
| !!! | CATTTTTATTTTTACTTGGA+TGG | - | chr1_3:3193445-3193464 | Msa0097380:CDS | 20.0% |
| !! | TCAATCATTTGAAGAAAAAA+GGG | + | chr1_3:3194097-3194116 | None:intergenic | 20.0% |
| !! | ATCAATCATTTGAAGAAAAA+AGG | + | chr1_3:3194098-3194117 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCAAATGATTGAT+TGG | - | chr1_3:3194098-3194117 | Msa0097380:intron | 20.0% |
| !! | TTCAATTAGGATATTATCAA+TGG | + | chr1_3:3194174-3194193 | None:intergenic | 20.0% |
| ! | TATGAAAATAAGCTGAAAAC+AGG | - | chr1_3:3192476-3192495 | Msa0097380:CDS | 25.0% |
| ! | AAATCAATTAAAAGCCTGTT+TGG | + | chr1_3:3192589-3192608 | None:intergenic | 25.0% |
| ! | ATTGTTTGGTATATGAAGAT+TGG | - | chr1_3:3192766-3192785 | Msa0097380:intron | 25.0% |
| ! | AACTTTACAAAGTATAATGC+TGG | - | chr1_3:3192994-3193013 | Msa0097380:intron | 25.0% |
| !!! | ACATCATGTCATTTTGATTT+AGG | + | chr1_3:3193254-3193273 | None:intergenic | 25.0% |
| !! | AAGAATAAAAAGCACATTGT+AGG | - | chr1_3:3193309-3193328 | Msa0097380:CDS | 25.0% |
| ! | TTGACATTGCACAATAATTA+AGG | + | chr1_3:3193608-3193627 | None:intergenic | 25.0% |
| !! | TAAGTTACTGTCACATTTTT+CGG | - | chr1_3:3194001-3194020 | Msa0097380:intron | 25.0% |
| ! | ACGAAATTGATATCAATTGT+TGG | - | chr1_3:3194054-3194073 | Msa0097380:intron | 25.0% |
| ! | TATCCTAATTGAAAACTAGT+TGG | - | chr1_3:3194181-3194200 | Msa0097380:intron | 25.0% |
| !!! | TCTGGATTTTTTGCCAATAT+CGG | + | chr1_3:3191875-3191894 | None:intergenic | 30.0% |
| AAAGTAATTACTTACGAGAC+CGG | + | chr1_3:3192073-3192092 | None:intergenic | 30.0% | |
| TACTAAACTTGCGGTAAAAA+AGG | + | chr1_3:3192107-3192126 | None:intergenic | 30.0% | |
| TCTACATTATTGAAGAGTAG+AGG | - | chr1_3:3192179-3192198 | Msa0097380:three_prime_UTR | 30.0% | |
| CTACATTATTGAAGAGTAGA+GGG | - | chr1_3:3192180-3192199 | Msa0097380:three_prime_UTR | 30.0% | |
| ! | ATACCTTCAATCAAAAGTGT+CGG | - | chr1_3:3192377-3192396 | Msa0097380:CDS | 30.0% |
| TGGTATATGAAGATTGGATT+TGG | - | chr1_3:3192772-3192791 | Msa0097380:intron | 30.0% | |
| !! | ATTGATTTTTCTGCGACAAT+TGG | - | chr1_3:3192919-3192938 | Msa0097380:intron | 30.0% |
| ! | AGTACTTTTGTAAGTAACTG+AGG | - | chr1_3:3193050-3193069 | Msa0097380:intron | 30.0% |
| TCCAGATTCATATTGTGAAT+CGG | - | chr1_3:3193086-3193105 | Msa0097380:intron | 30.0% | |
| ! | AATAAAAAGCACATTGTAGG+AGG | - | chr1_3:3193312-3193331 | Msa0097380:intron | 30.0% |
| AAAAGTGAGAAACCAAACTT+GGG | + | chr1_3:3193942-3193961 | None:intergenic | 30.0% | |
| !! | GATATCAATTGTTGGTTTCA+TGG | - | chr1_3:3194062-3194081 | Msa0097380:intron | 30.0% |
| TCTTCAAATGATTGATTGGT+TGG | - | chr1_3:3194102-3194121 | Msa0097380:CDS | 30.0% | |
| TAAATCATACACAGTGACAA+TGG | + | chr1_3:3194147-3194166 | None:intergenic | 30.0% | |
| CATAAGTTACACAGAATACT+TGG | + | chr1_3:3194242-3194261 | None:intergenic | 30.0% | |
| GATATTGGCAAAAAATCCAG+AGG | - | chr1_3:3191874-3191893 | Msa0097380:three_prime_UTR | 35.0% | |
| TTATCTTTCCGATTCCGATT+TGG | - | chr1_3:3191962-3191981 | Msa0097380:three_prime_UTR | 35.0% | |
| ! | TTTTGTGAGAATATCTGCGA+CGG | + | chr1_3:3192004-3192023 | None:intergenic | 35.0% |
| GCTCTCTCTATCTTCTATTT+CGG | - | chr1_3:3192285-3192304 | Msa0097380:CDS | 35.0% | |
| ! | AGTTCAAGTTATTATCGGTG+TGG | + | chr1_3:3192327-3192346 | None:intergenic | 35.0% |
| !! | TAACCGACACTTTTGATTGA+AGG | + | chr1_3:3192383-3192402 | None:intergenic | 35.0% |
| TCAAATAAGCTGATCCAAAC+AGG | - | chr1_3:3192572-3192591 | Msa0097380:intron | 35.0% | |
| GTAATCCATGTATGTTCTTC+AGG | - | chr1_3:3192648-3192667 | Msa0097380:intron | 35.0% | |
| CAATATCTTCATGATCATGC+TGG | - | chr1_3:3192859-3192878 | Msa0097380:intron | 35.0% | |
| !! | TTACAAAAGTACTGAAGCAC+TGG | + | chr1_3:3193043-3193062 | None:intergenic | 35.0% |
| TCCGATTCACAATATGAATC+TGG | + | chr1_3:3193090-3193109 | None:intergenic | 35.0% | |
| !!! | TTTTAAGTCATTGCCGACTT+TGG | - | chr1_3:3193512-3193531 | Msa0097380:intron | 35.0% |
| TTCGATAAGTCTTCCAAAGT+CGG | + | chr1_3:3193528-3193547 | None:intergenic | 35.0% | |
| ! | CGAATAACTGTTACTTGTGT+CGG | - | chr1_3:3193544-3193563 | Msa0097380:intron | 35.0% |
| !!! | TCATTTTTTCAGAGCTGACA+AGG | - | chr1_3:3193656-3193675 | Msa0097380:intron | 35.0% |
| !!! | CATTTTTTCAGAGCTGACAA+GGG | - | chr1_3:3193657-3193676 | Msa0097380:intron | 35.0% |
| GTGACCTAGAAAAGTTGAAT+GGG | - | chr1_3:3193706-3193725 | Msa0097380:intron | 35.0% | |
| TGACCTAGAAAAGTTGAATG+GGG | - | chr1_3:3193707-3193726 | Msa0097380:intron | 35.0% | |
| TACAAATGAGAACACGTTGA+CGG | - | chr1_3:3193764-3193783 | Msa0097380:intron | 35.0% | |
| TGCAACATCATCTTACACAT+AGG | - | chr1_3:3193865-3193884 | Msa0097380:intron | 35.0% | |
| TTGGAAAATAGTCCCAAGTT+TGG | - | chr1_3:3193927-3193946 | Msa0097380:CDS | 35.0% | |
| CAAAAGTGAGAAACCAAACT+TGG | + | chr1_3:3193943-3193962 | None:intergenic | 35.0% | |
| ! | CCTTAGAGGGGTTTAAAATA+CGG | - | chr1_3:3193969-3193988 | Msa0097380:CDS | 35.0% |
| !!! | CCACCAACTAGTTTTCAATT+AGG | + | chr1_3:3194187-3194206 | None:intergenic | 35.0% |
| CCTAATTGAAAACTAGTTGG+TGG | - | chr1_3:3194184-3194203 | Msa0097380:intron | 35.0% | |
| ATTATGCATGAAGGAAGCAA+CGG | + | chr1_3:3194297-3194316 | None:intergenic | 35.0% | |
| TTCCTTCATGCATAATTGAC+TGG | - | chr1_3:3194301-3194320 | Msa0097380:CDS | 35.0% | |
| ATCCAGTCAATTATGCATGA+AGG | + | chr1_3:3194306-3194325 | None:intergenic | 35.0% | |
| ! | TTTTGCCAATATCGGAGAAG+AGG | + | chr1_3:3191867-3191886 | None:intergenic | 40.0% |
| TCGGAAAACCAAATCGGAAT+CGG | + | chr1_3:3191973-3191992 | None:intergenic | 40.0% | |
| TCGAGATCGGAAAACCAAAT+CGG | + | chr1_3:3191979-3191998 | None:intergenic | 40.0% | |
| ! | GGAGATGGTGAGTTTTTGAT+CGG | + | chr1_3:3192037-3192056 | None:intergenic | 40.0% |
| AAGGTATGTACAACACGTCA+CGG | + | chr1_3:3192364-3192383 | None:intergenic | 40.0% | |
| ATGAGTTTCGTATCACTGCA+TGG | + | chr1_3:3192538-3192557 | None:intergenic | 40.0% | |
| CAACACCTGAAGAACATACA+TGG | + | chr1_3:3192656-3192675 | None:intergenic | 40.0% | |
| CGATTACCTGACTACAAATC+CGG | - | chr1_3:3192730-3192749 | Msa0097380:intron | 40.0% | |
| ! | TACAAATCCGGCAAGGTATT+AGG | - | chr1_3:3192742-3192761 | Msa0097380:intron | 40.0% |
| ! | ACAAATCCGGCAAGGTATTA+GGG | - | chr1_3:3192743-3192762 | Msa0097380:intron | 40.0% |
| AACAATCCCTAATACCTTGC+CGG | + | chr1_3:3192752-3192771 | None:intergenic | 40.0% | |
| ! | GCAAGGTATTAGGGATTGTT+TGG | - | chr1_3:3192752-3192771 | Msa0097380:intron | 40.0% |
| TGGATTTGGACCGAAAATGT+AGG | - | chr1_3:3192786-3192805 | Msa0097380:intron | 40.0% | |
| GTCGCAGAAAAATCAATAGC+AGG | + | chr1_3:3192916-3192935 | None:intergenic | 40.0% | |
| TGTAAAGTTGCCAACATGTG+TGG | + | chr1_3:3192983-3193002 | None:intergenic | 40.0% | |
| AACACTGCACAATACACTGT+AGG | - | chr1_3:3193282-3193301 | Msa0097380:CDS | 40.0% | |
| TTGCACAATAATTAAGGCCC+CGG | + | chr1_3:3193602-3193621 | None:intergenic | 40.0% | |
| CGTGACCTAGAAAAGTTGAA+TGG | - | chr1_3:3193705-3193724 | Msa0097380:intron | 40.0% | |
| GACCTAGAAAAGTTGAATGG+GGG | - | chr1_3:3193708-3193727 | Msa0097380:intron | 40.0% | |
| TTGTGGGAGAAATTAGCAGA+AGG | - | chr1_3:3193736-3193755 | Msa0097380:intron | 40.0% | |
| TGATCCTCAAACAACTGTGA+AGG | - | chr1_3:3193806-3193825 | Msa0097380:intron | 40.0% | |
| TTTGCCTTCACAGTTGTTTG+AGG | + | chr1_3:3193813-3193832 | None:intergenic | 40.0% | |
| AGGTCATTCTTGACAATCTC+TGG | - | chr1_3:3193885-3193904 | Msa0097380:intron | 40.0% | |
| ! | TTCCAATGCCTTTGTTTCGA+AGG | + | chr1_3:3193913-3193932 | None:intergenic | 40.0% |
| ! | ACTTTTGCTCAAGCCTTAGA+GGG | - | chr1_3:3193956-3193975 | Msa0097380:CDS | 40.0% |
| !! | CCGTATTTTAAACCCCTCTA+AGG | + | chr1_3:3193972-3193991 | None:intergenic | 40.0% |
| AAGAGAGTGAGTGTTACCTC+TGG | + | chr1_3:3191893-3191912 | None:intergenic | 45.0% | |
| ATTACTTACGAGACCGGAGT+TGG | + | chr1_3:3192067-3192086 | None:intergenic | 45.0% | |
| GAAGCAAGAACTTTCGCAGA+AGG | + | chr1_3:3192706-3192725 | None:intergenic | 45.0% | |
| !! | AGTACTGAAGCACTGGAACT+TGG | + | chr1_3:3193036-3193055 | None:intergenic | 45.0% |
| CTGCACAATACACTGTAGGA+AGG | - | chr1_3:3193286-3193305 | Msa0097380:CDS | 45.0% | |
| TGGATGGGATGTTCTTTCTC+TGG | - | chr1_3:3193461-3193480 | Msa0097380:CDS | 45.0% | |
| ACGCAAGTACGATACCTTCA+TGG | + | chr1_3:3193688-3193707 | None:intergenic | 45.0% | |
| ! | CTCCCCCATTCAACTTTTCT+AGG | + | chr1_3:3193713-3193732 | None:intergenic | 45.0% |
| AATGAGAACACGTTGACGGT+TGG | - | chr1_3:3193768-3193787 | Msa0097380:intron | 45.0% | |
| GACGGTTGGATGTTCTTATG+TGG | - | chr1_3:3193782-3193801 | Msa0097380:intron | 45.0% | |
| AAGGCAAAGCTGAACAACCA+TGG | - | chr1_3:3193825-3193844 | Msa0097380:intron | 45.0% | |
| GAACAACCATGGCAATCTTG+AGG | - | chr1_3:3193836-3193855 | Msa0097380:intron | 45.0% | |
| ATACAGCCTCAAGATTGCCA+TGG | + | chr1_3:3193845-3193864 | None:intergenic | 45.0% | |
| ! | TGCCTTCGAAACAAAGGCAT+TGG | - | chr1_3:3193908-3193927 | Msa0097380:CDS | 45.0% |
| ! | CACTTTTGCTCAAGCCTTAG+AGG | - | chr1_3:3193955-3193974 | Msa0097380:CDS | 45.0% |
| ! | CTTTTGCTCAAGCCTTAGAG+GGG | - | chr1_3:3193957-3193976 | Msa0097380:CDS | 45.0% |
| ATCTGCGACGGAATCGAGAT+CGG | + | chr1_3:3191992-3192011 | None:intergenic | 50.0% | |
| AAGAGTAGAGGGCTCTCTTC+TGG | - | chr1_3:3192191-3192210 | Msa0097380:exon | 50.0% | |
| ACCTGACTACAAATCCGGCA+AGG | - | chr1_3:3192735-3192754 | Msa0097380:intron | 50.0% | |
| ACCTTGCCGGATTTGTAGTC+AGG | + | chr1_3:3192739-3192758 | None:intergenic | 50.0% | |
| !!! | TGCTGGTTTTACTGCTGCTG+TGG | - | chr1_3:3192876-3192895 | Msa0097380:intron | 50.0% |
| TCTGCGACAATTGGTACTCC+TGG | - | chr1_3:3192928-3192947 | Msa0097380:intron | 50.0% | |
| GGTACTCCTGGTATTGCGTT+TGG | - | chr1_3:3192940-3192959 | Msa0097380:intron | 50.0% | |
| TCTGCTCCAAACGCAATACC+AGG | + | chr1_3:3192949-3192968 | None:intergenic | 50.0% | |
| ACCAGCTACTCCACACATGT+TGG | - | chr1_3:3192970-3192989 | Msa0097380:intron | 50.0% | |
| AAGCACATTGTAGGAGGCAG+TGG | - | chr1_3:3193318-3193337 | Msa0097380:intron | 50.0% | |
| AGCACATTGTAGGAGGCAGT+GGG | - | chr1_3:3193319-3193338 | Msa0097380:intron | 50.0% | |
| ! | ACCAAAAGCGCAGTGTGCAA+GGG | - | chr1_3:3193343-3193362 | Msa0097380:intron | 50.0% |
| TACCGAGCCCTGCAAATTTC+CGG | - | chr1_3:3193580-3193599 | Msa0097380:intron | 50.0% | |
| TAAGGCCCCGGAAATTTGCA+GGG | + | chr1_3:3193590-3193609 | None:intergenic | 50.0% | |
| TTAAGGCCCCGGAAATTTGC+AGG | + | chr1_3:3193591-3193610 | None:intergenic | 50.0% | |
| TGACAAGGGAGACTCCATGA+AGG | - | chr1_3:3193671-3193690 | Msa0097380:intron | 50.0% | |
| TTGAATGGGGGAGCTGTTGT+GGG | - | chr1_3:3193720-3193739 | Msa0097380:intron | 50.0% | |
| CTCTGGTGCCTTCGAAACAA+AGG | - | chr1_3:3193902-3193921 | Msa0097380:CDS | 50.0% | |
| CCAATATCGGAGAAGAGGCC+AGG | + | chr1_3:3191862-3191881 | None:intergenic | 55.0% | |
| CCTGGCCTCTTCTCCGATAT+TGG | - | chr1_3:3191859-3191878 | Msa0097380:three_prime_UTR | 55.0% | |
| ATCTCCTCCTCCACCAACTC+CGG | - | chr1_3:3192051-3192070 | Msa0097380:three_prime_UTR | 55.0% | |
| ACTTACGAGACCGGAGTTGG+TGG | + | chr1_3:3192064-3192083 | None:intergenic | 55.0% | |
| GCCAACATGTGTGGAGTAGC+TGG | + | chr1_3:3192974-3192993 | None:intergenic | 55.0% | |
| GCACATTGTAGGAGGCAGTG+GGG | - | chr1_3:3193320-3193339 | Msa0097380:intron | 55.0% | |
| ! | GACCAAAAGCGCAGTGTGCA+AGG | - | chr1_3:3193342-3193361 | Msa0097380:intron | 55.0% |
| AGTGTGCAAGGGCTCTTCAG+TGG | - | chr1_3:3193354-3193373 | Msa0097380:intron | 55.0% | |
| ACCGAGCCCTGCAAATTTCC+GGG | - | chr1_3:3193581-3193600 | Msa0097380:intron | 55.0% | |
| GTTGAATGGGGGAGCTGTTG+TGG | - | chr1_3:3193719-3193738 | Msa0097380:intron | 55.0% | |
| TGCATGAAGGAAGCAACGGC+TGG | + | chr1_3:3194293-3194312 | None:intergenic | 55.0% | |
| GGAGAAGAGGCCAGGTCCTT+TGG | + | chr1_3:3191854-3191873 | None:intergenic | 60.0% | |
| !! | GGAGTTGGTGGAGGAGGAGA+TGG | + | chr1_3:3192052-3192071 | None:intergenic | 60.0% |
| !! | TACGAGACCGGAGTTGGTGG+AGG | + | chr1_3:3192061-3192080 | None:intergenic | 60.0% |
| GGTGTGGACGTGTCAGTGAG+AGG | + | chr1_3:3192311-3192330 | None:intergenic | 60.0% | |
| ! | GCCCTTGCACACTGCGCTTT+TGG | + | chr1_3:3193347-3193366 | None:intergenic | 60.0% |
| CCCCGGAAATTTGCAGGGCT+CGG | + | chr1_3:3193585-3193604 | None:intergenic | 60.0% | |
| CCGAGCCCTGCAAATTTCCG+GGG | - | chr1_3:3193582-3193601 | Msa0097380:intron | 60.0% | |
| !! | GAGACCGGAGTTGGTGGAGG+AGG | + | chr1_3:3192058-3192077 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 3191844 | 3194334 | 3191844 | ID=Msa0097380;Name=Msa0097380 |
| chr1_3 | mRNA | 3191844 | 3194334 | 3191844 | ID=Msa0097380-mRNA-1;Parent=Msa0097380;Name=Msa0097380-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.83|1|1|1|6|360|277 |
| chr1_3 | exon | 3191844 | 3192510 | 3191844 | ID=Msa0097380-mRNA-1:exon:948;Parent=Msa0097380-mRNA-1 |
| chr1_3 | exon | 3193120 | 3193328 | 3193120 | ID=Msa0097380-mRNA-1:exon:947;Parent=Msa0097380-mRNA-1 |
| chr1_3 | exon | 3193422 | 3193508 | 3193422 | ID=Msa0097380-mRNA-1:exon:946;Parent=Msa0097380-mRNA-1 |
| chr1_3 | exon | 3193898 | 3194008 | 3193898 | ID=Msa0097380-mRNA-1:exon:945;Parent=Msa0097380-mRNA-1 |
| chr1_3 | exon | 3194101 | 3194168 | 3194101 | ID=Msa0097380-mRNA-1:exon:944;Parent=Msa0097380-mRNA-1 |
| chr1_3 | exon | 3194283 | 3194334 | 3194283 | ID=Msa0097380-mRNA-1:exon:943;Parent=Msa0097380-mRNA-1 |
| chr1_3 | CDS | 3194283 | 3194334 | 3194283 | ID=Msa0097380-mRNA-1:cds;Parent=Msa0097380-mRNA-1 |
| chr1_3 | CDS | 3194101 | 3194168 | 3194101 | ID=Msa0097380-mRNA-1:cds;Parent=Msa0097380-mRNA-1 |
| chr1_3 | CDS | 3193898 | 3194008 | 3193898 | ID=Msa0097380-mRNA-1:cds;Parent=Msa0097380-mRNA-1 |
| chr1_3 | CDS | 3193422 | 3193508 | 3193422 | ID=Msa0097380-mRNA-1:cds;Parent=Msa0097380-mRNA-1 |
| chr1_3 | CDS | 3193120 | 3193328 | 3193120 | ID=Msa0097380-mRNA-1:cds;Parent=Msa0097380-mRNA-1 |
| chr1_3 | CDS | 3192204 | 3192510 | 3192204 | ID=Msa0097380-mRNA-1:cds;Parent=Msa0097380-mRNA-1 |
| chr1_3 | three_prime_UTR | 3191844 | 3192203 | 3191844 | ID=Msa0097380-mRNA-1:three_prime_utr;Parent=Msa0097380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
