Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1299690 | sp|Q8LC68|NRP2_ARATH | 73.182 | 220 | 57 | 2 | 1 | 218 | 1 | 220 | 7.45e-113 | 328 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1299690 | A0A072UQ45 | 99.248 | 266 | 1 | 1 | 1 | 265 | 1 | 266 | 0.0 | 520 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002430 | Msa1299690 | 0.817243 | 3.648797e-52 | -8.615850e-47 |
Msa0018050 | Msa1299690 | 0.824732 | 6.882477e-54 | -8.615850e-47 |
Msa0052370 | Msa1299690 | 0.805732 | 1.157943e-49 | -8.615850e-47 |
Msa0071760 | Msa1299690 | 0.822435 | 2.372019e-53 | -8.615850e-47 |
Msa0097380 | Msa1299690 | 0.811454 | 6.945839e-51 | -8.615850e-47 |
Msa0611560 | Msa1299690 | 0.814097 | 1.832798e-51 | -8.615850e-47 |
Msa0659050 | Msa1299690 | 0.823231 | 1.547888e-53 | -8.615850e-47 |
Msa0728870 | Msa1299690 | 0.823793 | 1.144162e-53 | -8.615850e-47 |
Msa0136400 | Msa1299690 | 0.823545 | 1.307516e-53 | -8.615850e-47 |
Msa0177220 | Msa1299690 | 0.820529 | 6.538232e-53 | -8.615850e-47 |
Msa0188440 | Msa1299690 | 0.804104 | 2.535270e-49 | -8.615850e-47 |
Msa0208190 | Msa1299690 | 0.842429 | 2.599537e-58 | -8.615850e-47 |
Msa0208320 | Msa1299690 | 0.833820 | 4.282009e-56 | -8.615850e-47 |
Msa0223090 | Msa1299690 | 0.809399 | 1.929111e-50 | -8.615850e-47 |
Msa0223370 | Msa1299690 | 0.809900 | 1.505306e-50 | -8.615850e-47 |
Msa1257450 | Msa1299690 | 0.830910 | 2.250439e-55 | -8.615850e-47 |
Msa1299690 | Msa1305260 | 0.857278 | 1.819612e-62 | -8.615850e-47 |
Msa1299690 | Msa1331510 | 0.834891 | 2.305543e-56 | -8.615850e-47 |
Msa1299690 | Msa1332230 | 0.928817 | 1.687634e-92 | -8.615850e-47 |
Msa1299690 | Msa1341780 | 0.807088 | 5.996661e-50 | -8.615850e-47 |
Msa1299690 | Msa1344160 | 0.815672 | 8.198753e-52 | -8.615850e-47 |
Msa1299690 | Msa1344190 | 0.801845 | 7.430763e-49 | -8.615850e-47 |
Msa1299690 | Msa1364810 | 0.840190 | 1.009426e-57 | -8.615850e-47 |
Msa1299690 | Msa1418980 | 0.812362 | 4.404879e-51 | -8.615850e-47 |
Msa1299690 | Msa1433590 | 0.957002 | 7.730678e-115 | -8.615850e-47 |
Msa0418980 | Msa1299690 | 0.826390 | 2.785249e-54 | -8.615850e-47 |
Msa0460560 | Msa1299690 | 0.800794 | 1.219234e-48 | -8.615850e-47 |
Msa1022730 | Msa1299690 | 0.819011 | 1.452822e-52 | -8.615850e-47 |
Msa1070810 | Msa1299690 | 0.817807 | 2.722742e-52 | -8.615850e-47 |
Msa1106870 | Msa1299690 | 0.815662 | 8.241241e-52 | -8.615850e-47 |
Msa0262400 | Msa1299690 | 0.839332 | 1.687859e-57 | -8.615850e-47 |
Msa0339880 | Msa1299690 | 0.813038 | 3.133906e-51 | -8.615850e-47 |
Msa1115190 | Msa1299690 | 0.826845 | 2.169435e-54 | -8.615850e-47 |
Msa1118790 | Msa1299690 | 0.816986 | 4.167731e-52 | -8.615850e-47 |
Msa1158630 | Msa1299690 | 0.822365 | 2.463198e-53 | -8.615850e-47 |
Msa1207200 | Msa1299690 | 0.840033 | 1.109567e-57 | -8.615850e-47 |
Msa1211820 | Msa1299690 | 0.949561 | 9.912363e-108 | -8.615850e-47 |
Msa1218110 | Msa1299690 | 0.814877 | 1.231357e-51 | -8.615850e-47 |
Msa0550490 | Msa1299690 | 0.823352 | 1.450438e-53 | -8.615850e-47 |
Msa0554210 | Msa1299690 | 0.823562 | 1.295853e-53 | -8.615850e-47 |
Msa0587830 | Msa1299690 | 0.831579 | 1.540886e-55 | -8.615850e-47 |
Msa0587850 | Msa1299690 | 0.837611 | 4.694197e-57 | -8.615850e-47 |
Msa0966110 | Msa1299690 | 0.804447 | 2.150883e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1299690 | MtrunA17_Chr4g0060621 | 99.248 | 266 | 1 | 1 | 1 | 265 | 1 | 266 | 0.0 | 520 |
Msa1299690 | MtrunA17_Chr3g0092521 | 78.281 | 221 | 45 | 1 | 1 | 218 | 1 | 221 | 9.42e-127 | 360 |
Msa1299690 | MtrunA17_Chr4g0064221 | 62.868 | 272 | 81 | 5 | 5 | 265 | 105 | 367 | 7.19e-107 | 314 |
Msa1299690 | MtrunA17_Chr6g0487861 | 48.810 | 84 | 42 | 1 | 57 | 139 | 2 | 85 | 4.63e-25 | 95.1 |
Msa1299690 | MtrunA17_Chr6g0487691 | 48.810 | 84 | 42 | 1 | 57 | 139 | 2 | 85 | 4.63e-25 | 95.1 |
Msa1299690 | MtrunA17_Chr6g0487501 | 39.496 | 119 | 59 | 2 | 100 | 206 | 38 | 155 | 3.06e-20 | 84.7 |
Msa1299690 | MtrunA17_Chr2g0299501 | 27.957 | 186 | 103 | 4 | 5 | 160 | 30 | 214 | 1.01e-12 | 67.4 |
Msa1299690 | MtrunA17_Chr2g0330141 | 27.568 | 185 | 102 | 4 | 7 | 160 | 30 | 213 | 3.50e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1299690 | AT1G18800.1 | 72.851 | 221 | 57 | 3 | 1 | 218 | 1 | 221 | 5.40e-112 | 323 |
Msa1299690 | AT1G74560.1 | 73.171 | 205 | 53 | 2 | 17 | 219 | 22 | 226 | 4.57e-108 | 313 |
Msa1299690 | AT1G74560.3 | 73.333 | 195 | 50 | 2 | 17 | 209 | 22 | 216 | 3.01e-102 | 298 |
Msa1299690 | AT2G19480.2 | 26.380 | 163 | 91 | 3 | 26 | 160 | 55 | 216 | 9.78e-11 | 62.0 |
Msa1299690 | AT2G19480.1 | 26.380 | 163 | 91 | 3 | 26 | 160 | 55 | 216 | 9.93e-11 | 62.0 |
Find 98 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGACCATGGCCTTTCTTTC+AGG | 0.071837 | 8_3:-61015849 | Msa1299690:three_prime_UTR |
TCAAATCTATTCCTGATTTC+TGG | 0.142000 | 8_3:-61019904 | Msa1299690:CDS |
GGTATATTAGCTTTCTCTTT+TGG | 0.151187 | 8_3:-61015699 | Msa1299690:three_prime_UTR |
TTCGGTGAGTTTCTGCTTCT+TGG | 0.176469 | 8_3:+61020223 | None:intergenic |
TTGAGTATGTATTAGGCTTT+TGG | 0.206492 | 8_3:-61015877 | Msa1299690:three_prime_UTR |
TTGGGTATCTTAGCATAAAA+AGG | 0.247822 | 8_3:-61015629 | Msa1299690:three_prime_UTR |
ACAGGGTAATTGATAAATTA+TGG | 0.281625 | 8_3:+61015772 | None:intergenic |
TGCATGATTATAATTTATAT+TGG | 0.287040 | 8_3:-61015514 | Msa1299690:three_prime_UTR |
AATTAATCAAGGATGATTTA+TGG | 0.308424 | 8_3:-61016786 | Msa1299690:CDS |
TCTTGAGGTTGAAGATAATA+AGG | 0.335371 | 8_3:-61019304 | Msa1299690:CDS |
AGCTTTATGCATAACTTTCC+TGG | 0.337844 | 8_3:-61015552 | Msa1299690:three_prime_UTR |
TGAAAACGCGAAAGGGTGTT+AGG | 0.338957 | 8_3:+61020328 | None:intergenic |
GATAATAAGGATGTCAAATC+TGG | 0.344818 | 8_3:-61019291 | Msa1299690:CDS |
TACTGCATTTACTAGCCGTT+TGG | 0.353047 | 8_3:-61015648 | Msa1299690:three_prime_UTR |
AGTTCAGCATCAACTTCTTC+GGG | 0.365326 | 8_3:+61020197 | None:intergenic |
CTTCTCATGATTGTCGCCAT+TGG | 0.369583 | 8_3:+61018296 | None:intergenic |
GAGTTCAGCATCAACTTCTT+CGG | 0.373422 | 8_3:+61020196 | None:intergenic |
ATGAATGCAGTTTCCTTAGT+TGG | 0.378489 | 8_3:-61017025 | Msa1299690:intron |
TTCTCATGATTGTCGCCATT+GGG | 0.394389 | 8_3:+61018297 | None:intergenic |
AGGCAATTGAAAATGCATTA+TGG | 0.398971 | 8_3:-61015926 | Msa1299690:exon |
TCCGACTATAGTTAACTTGC+GGG | 0.399219 | 8_3:+61015579 | None:intergenic |
ACTGCATTTACTAGCCGTTT+GGG | 0.400007 | 8_3:-61015647 | Msa1299690:three_prime_UTR |
TGAATCCTCAAAATAGGGAT+TGG | 0.404769 | 8_3:+61019070 | None:intergenic |
AGACCATGGCCTTTCTTTCA+GGG | 0.412109 | 8_3:-61015848 | Msa1299690:three_prime_UTR |
GAATCCTCAAAATAGGGATT+GGG | 0.412238 | 8_3:+61019071 | None:intergenic |
GACACCAACCTGACATCAAC+AGG | 0.420723 | 8_3:+61018255 | None:intergenic |
TCTCTGTTGTTCCTTCTTCA+CGG | 0.428176 | 8_3:+61019024 | None:intergenic |
GCATTTATGTTTCAGTTGCC+AGG | 0.432385 | 8_3:+61015534 | None:intergenic |
ACTAGATGAAATTACTTGAC+AGG | 0.444435 | 8_3:+61015754 | None:intergenic |
AAGTTGATGAAGAAGAGAAA+AGG | 0.450896 | 8_3:+61020299 | None:intergenic |
ACAGCATTCAACCAGAAATC+AGG | 0.453818 | 8_3:+61019893 | None:intergenic |
TCATCGGCATCCTCTTCATC+AGG | 0.453926 | 8_3:+61016608 | None:intergenic |
ATGGTCGGAGAACCACTAAC+TGG | 0.454059 | 8_3:+61015791 | None:intergenic |
TCGTTCCGCTTATCGTAAAC+CGG | 0.454701 | 8_3:+61019932 | None:intergenic |
GAGTTAATGCCCTGAAAGAA+AGG | 0.464958 | 8_3:+61015839 | None:intergenic |
ATGAGAAGAAAGGGAACAAA+AGG | 0.469606 | 8_3:-61018281 | Msa1299690:CDS |
AGATGTTGATATTCGCCATC+GGG | 0.470851 | 8_3:-61015470 | Msa1299690:three_prime_UTR |
CTGTGAGCAGAAAGATGATA+TGG | 0.473510 | 8_3:-61016994 | Msa1299690:CDS |
AGTTGATGAAGAAGAGAAAA+GGG | 0.474749 | 8_3:+61020300 | None:intergenic |
GGCGACAATCATGAGAAGAA+AGG | 0.484157 | 8_3:-61018291 | Msa1299690:CDS |
ATCTAAATTCTAACAGAGGA+TGG | 0.486341 | 8_3:+61015489 | None:intergenic |
AAAGGCCTCCTGTTGATGTC+AGG | 0.487205 | 8_3:-61018263 | Msa1299690:intron |
AGCAGAAGTATAATGAGATT+AGG | 0.487313 | 8_3:-61019958 | Msa1299690:CDS |
CACAGTCACAAAACCAACTA+AGG | 0.487948 | 8_3:+61017012 | None:intergenic |
GCAGCTTGCAGAATTAATCA+AGG | 0.516175 | 8_3:-61016797 | Msa1299690:intron |
GTATAATGAGATTAGGAAGC+CGG | 0.518765 | 8_3:-61019951 | Msa1299690:CDS |
TGTTGTTCCTTCTTCACGGA+AGG | 0.521205 | 8_3:+61019028 | None:intergenic |
GAGCTACACAAGCCAGTTAG+TGG | 0.523204 | 8_3:-61015803 | Msa1299690:three_prime_UTR |
ACACAGAGGCGAAGCGAAGA+TGG | 0.525363 | 8_3:-61020258 | Msa1299690:exon |
TCTAAATTCTAACAGAGGAT+GGG | 0.525688 | 8_3:+61015490 | None:intergenic |
GCGACAATCATGAGAAGAAA+GGG | 0.529007 | 8_3:-61018290 | Msa1299690:CDS |
TAATGATGAAGCGAGTGATA+AGG | 0.530659 | 8_3:-61019993 | Msa1299690:CDS |
TGAAGCTGATGATGAGGTAA+TGG | 0.532222 | 8_3:-61016585 | Msa1299690:CDS |
GAAAACGCGAAAGGGTGTTA+GGG | 0.538787 | 8_3:+61020329 | None:intergenic |
GATCCAAGATGACCTCGAAA+AGG | 0.540267 | 8_3:-61020147 | Msa1299690:intron |
TATCACTAAAATTGCACGAT+GGG | 0.540851 | 8_3:+61015727 | None:intergenic |
CTCATTCAGTAGTTCACTGA+GGG | 0.542426 | 8_3:+61019738 | None:intergenic |
TTCCGACTATAGTTAACTTG+CGG | 0.542706 | 8_3:+61015578 | None:intergenic |
TGACGAAGAGGGTGATGATG+AGG | 0.543527 | 8_3:-61015950 | Msa1299690:CDS |
CTCTTCTTCATCAACTTCCG+CGG | 0.546448 | 8_3:-61020293 | Msa1299690:five_prime_UTR |
AGAGGCGAAGCGAAGATGGT+TGG | 0.555118 | 8_3:-61020254 | Msa1299690:exon |
CTCATCATCAGCTTCATCAT+CGG | 0.555556 | 8_3:+61016592 | None:intergenic |
CAAGTATTTGAGTTCTCTTG+AGG | 0.559002 | 8_3:-61019319 | Msa1299690:CDS |
GATCTCTTGCAATTTCTCGA+TGG | 0.566477 | 8_3:+61020166 | None:intergenic |
TCCCGCAAGTTAACTATAGT+CGG | 0.568159 | 8_3:-61015580 | Msa1299690:three_prime_UTR |
GTAGTTCACTGAGGGTAGGA+TGG | 0.569898 | 8_3:+61019746 | None:intergenic |
CCTCAGTGAACTACTGAATG+AGG | 0.570986 | 8_3:-61019737 | Msa1299690:CDS |
ACAGGAGGAGCCTGATGAAG+AGG | 0.571562 | 8_3:-61016618 | Msa1299690:intron |
CTAAATTCTAACAGAGGATG+GGG | 0.571769 | 8_3:+61015491 | None:intergenic |
GGTGGAATGAAAACGCGAAA+GGG | 0.576072 | 8_3:+61020321 | None:intergenic |
TAGATGTTGATATTCGCCAT+CGG | 0.578538 | 8_3:-61015471 | Msa1299690:three_prime_UTR |
CATAAAATGGAAAGAAGGCA+AGG | 0.587844 | 8_3:-61018988 | Msa1299690:intron |
CAAGTTAACTATAGTCGGAA+AGG | 0.588633 | 8_3:-61015575 | Msa1299690:three_prime_UTR |
TTTATGCTAAGATACCCAAA+CGG | 0.589342 | 8_3:+61015633 | None:intergenic |
ATGCCCTGAAAGAAAGGCCA+TGG | 0.592269 | 8_3:+61015845 | None:intergenic |
TGATGAAGAAGAGAAAAGGG+TGG | 0.594767 | 8_3:+61020303 | None:intergenic |
CTAGATGAAATTACTTGACA+GGG | 0.597629 | 8_3:+61015755 | None:intergenic |
CTTGCAATTTCTCGATGGAG+AGG | 0.599246 | 8_3:+61020171 | None:intergenic |
CATTAACTCATGTCAGCGAG+TGG | 0.602193 | 8_3:-61015825 | Msa1299690:three_prime_UTR |
AGACGAGGACGACTCTGAAG+AGG | 0.603159 | 8_3:-61015974 | Msa1299690:CDS |
GGGTGGAATGAAAACGCGAA+AGG | 0.604662 | 8_3:+61020320 | None:intergenic |
GGAAGCCGGTTTACGATAAG+CGG | 0.605546 | 8_3:-61019937 | Msa1299690:CDS |
GGTAATTGATAAATTATGGT+CGG | 0.611413 | 8_3:+61015776 | None:intergenic |
CTCTGAAGAGGATGACGAAG+AGG | 0.619244 | 8_3:-61015962 | Msa1299690:CDS |
TCTGAAGAGGATGACGAAGA+GGG | 0.630726 | 8_3:-61015961 | Msa1299690:CDS |
TTCAGTAGTTCACTGAGGGT+AGG | 0.637147 | 8_3:+61019742 | None:intergenic |
GAAGAGGGTGATGATGAGGA+AGG | 0.646490 | 8_3:-61015946 | Msa1299690:CDS |
CAACATCTAAATTCTAACAG+AGG | 0.650545 | 8_3:+61015485 | None:intergenic |
GACTATAGTTAACTTGCGGG+AGG | 0.653498 | 8_3:+61015582 | None:intergenic |
TACATGTAGGGAATACCCAA+TGG | 0.673035 | 8_3:-61018312 | Msa1299690:intron |
CGATGATGAAGCTGATGATG+AGG | 0.673202 | 8_3:-61016591 | Msa1299690:CDS |
ACACTGTTGAAATAAATGAG+TGG | 0.676235 | 8_3:+61016757 | None:intergenic |
CCTCATTCAGTAGTTCACTG+AGG | 0.684849 | 8_3:+61019737 | None:intergenic |
ACCAACCTGACATCAACAGG+AGG | 0.699036 | 8_3:+61018258 | None:intergenic |
GTATCACTAAAATTGCACGA+TGG | 0.702616 | 8_3:+61015726 | None:intergenic |
GGCAATCTTCACTCACACAG+AGG | 0.721891 | 8_3:-61020272 | Msa1299690:five_prime_UTR |
TATGGCTGACATTCACGACG+AGG | 0.776284 | 8_3:-61016976 | Msa1299690:intron |
TGTGTGAGTGAAGATTGCCG+CGG | 0.840253 | 8_3:+61020276 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAAATATATGATAGTTTA+AGG | - | chr8_3:61017277-61017296 | Msa1299690:intron | 10.0% |
!! | TTAAATATATGATAGTTTAA+GGG | - | chr8_3:61017278-61017297 | Msa1299690:intron | 10.0% |
!! | AAATGTTAATATAAAGAATA+TGG | - | chr8_3:61019493-61019512 | Msa1299690:intron | 10.0% |
!!! | ATTGTGTTTTAATAATTATG+TGG | - | chr8_3:61015747-61015766 | Msa1299690:three_prime_UTR | 15.0% |
!! | ATATCTATCAAATAAAGAAT+TGG | + | chr8_3:61016450-61016469 | None:intergenic | 15.0% |
!! | AAAAATTATAAATGCTGATA+GGG | + | chr8_3:61016854-61016873 | None:intergenic | 15.0% |
!! | TAAAAATTATAAATGCTGAT+AGG | + | chr8_3:61016855-61016874 | None:intergenic | 15.0% |
!! | TCAACAACAAAAAATATATA+AGG | + | chr8_3:61017354-61017373 | None:intergenic | 15.0% |
!!! | CATTTTGTATAAACATATAA+AGG | + | chr8_3:61017657-61017676 | None:intergenic | 15.0% |
!!! | AAATGTTTTTTTACATGAAA+GGG | + | chr8_3:61018526-61018545 | None:intergenic | 15.0% |
!!! | AAAATGTTTTTTTACATGAA+AGG | + | chr8_3:61018527-61018546 | None:intergenic | 15.0% |
!!! | TTCACATTATTTATTGTTTT+CGG | + | chr8_3:61019598-61019617 | None:intergenic | 15.0% |
!! | TGTTTGTCATTAATTTAAAA+TGG | + | chr8_3:61019747-61019766 | None:intergenic | 15.0% |
!! | TGCATGATTATAATTTATAT+TGG | - | chr8_3:61020276-61020295 | Msa1299690:five_prime_UTR | 15.0% |
!! | GCTTCAATTGAATAAAAAAA+CGG | + | chr8_3:61015671-61015690 | None:intergenic | 20.0% |
!! | AACACAATTCAAATCAAATT+AGG | + | chr8_3:61015735-61015754 | None:intergenic | 20.0% |
!!! | TGAAGTGATTTTCAAATTTT+CGG | + | chr8_3:61016571-61016590 | None:intergenic | 20.0% |
!! | AAAATTATAAATGCTGATAG+GGG | + | chr8_3:61016853-61016872 | None:intergenic | 20.0% |
!!! | ATAAATCATAAGTTTCAAGT+AGG | - | chr8_3:61017022-61017041 | Msa1299690:intron | 20.0% |
!!! | TAAATCATAAGTTTCAAGTA+GGG | - | chr8_3:61017023-61017042 | Msa1299690:intron | 20.0% |
!! | TGATTAGAAATACAATCATT+AGG | - | chr8_3:61017207-61017226 | Msa1299690:intron | 20.0% |
!!! | AATCCTTTTAAAGTAGATTT+AGG | + | chr8_3:61017929-61017948 | None:intergenic | 20.0% |
!! | ATTTGCAAATGAAAATACTT+TGG | + | chr8_3:61018149-61018168 | None:intergenic | 20.0% |
!! | TTTGAGAAATATGTTGTTAA+AGG | - | chr8_3:61018677-61018696 | Msa1299690:intron | 20.0% |
!! | AGTGAATTGAATATTATACA+AGG | + | chr8_3:61018968-61018987 | None:intergenic | 20.0% |
!! | AATTAATCAAGGATGATTTA+TGG | - | chr8_3:61019004-61019023 | Msa1299690:CDS | 20.0% |
!! | AAAATGACAAATAATGCATT+TGG | + | chr8_3:61019099-61019118 | None:intergenic | 20.0% |
!!! | TCTATTTTTTCCAAGAAAAA+CGG | + | chr8_3:61019236-61019255 | None:intergenic | 20.0% |
!! | TATTGCTCATAATAATTGTT+TGG | - | chr8_3:61019280-61019299 | Msa1299690:CDS | 20.0% |
!! | TGAAAATTATGAATTCAGTA+TGG | + | chr8_3:61019325-61019344 | None:intergenic | 20.0% |
!! | TTAATCCTAAACATTGTTAA+AGG | - | chr8_3:61019688-61019707 | Msa1299690:intron | 20.0% |
!! | CTCAAACCAAAAAAATAAAA+AGG | + | chr8_3:61019898-61019917 | None:intergenic | 20.0% |
! | ATTATTTGATCCACCAAATT+AGG | - | chr8_3:61015705-61015724 | Msa1299690:three_prime_UTR | 25.0% |
! | CAAATTAGGTTAACCTAATT+TGG | + | chr8_3:61015719-61015738 | None:intergenic | 25.0% |
!!! | TTCTGTGGAAGTATTTTTTA+AGG | - | chr8_3:61016190-61016209 | Msa1299690:intron | 25.0% |
! | CATGAAAGAACATAATAAGT+GGG | + | chr8_3:61016350-61016369 | None:intergenic | 25.0% |
! | ACATGAAAGAACATAATAAG+TGG | + | chr8_3:61016351-61016370 | None:intergenic | 25.0% |
!! | ATTTTCAAATTTTCGGAAGA+GGG | + | chr8_3:61016564-61016583 | None:intergenic | 25.0% |
! | CTTCATTGCAATGAAAAATA+TGG | - | chr8_3:61016586-61016605 | Msa1299690:CDS | 25.0% |
!!! | AGTTTTGAATCCTCAAAATA+GGG | + | chr8_3:61016728-61016747 | None:intergenic | 25.0% |
!!! | AAGTTTTGAATCCTCAAAAT+AGG | + | chr8_3:61016729-61016748 | None:intergenic | 25.0% |
!!! | TTAAACTTGCTAAAAGTAGA+GGG | - | chr8_3:61016937-61016956 | Msa1299690:intron | 25.0% |
! | AATCTGTAAATCTCACAATT+TGG | + | chr8_3:61017314-61017333 | None:intergenic | 25.0% |
! | TTGTGAGATTTACAGATTAA+TGG | - | chr8_3:61017316-61017335 | Msa1299690:intron | 25.0% |
! | GTTAGTAAAATACAACAACA+AGG | + | chr8_3:61017446-61017465 | None:intergenic | 25.0% |
! | GTTTATACAAAATGAACTTC+TGG | - | chr8_3:61017663-61017682 | Msa1299690:intron | 25.0% |
! | TTTATTGATGTCCTAATTGA+CGG | + | chr8_3:61017745-61017764 | None:intergenic | 25.0% |
! | TCAATTAGGACATCAATAAA+GGG | - | chr8_3:61017745-61017764 | Msa1299690:intron | 25.0% |
! | AAAAAAGGAAAAGAGGAATT+TGG | + | chr8_3:61017805-61017824 | None:intergenic | 25.0% |
! | ACTGAAAAGAAGAAGAAAAA+AGG | + | chr8_3:61017820-61017839 | None:intergenic | 25.0% |
! | ATGCCTAAATCTACTTTAAA+AGG | - | chr8_3:61017923-61017942 | Msa1299690:intron | 25.0% |
! | ACTTTGGTATTGTTAAATAG+CGG | + | chr8_3:61018133-61018152 | None:intergenic | 25.0% |
! | TTCATTTGCAAATAATTGAC+TGG | - | chr8_3:61018156-61018175 | Msa1299690:intron | 25.0% |
! | ACAATTGATCAAATTTCTCT+TGG | + | chr8_3:61018264-61018283 | None:intergenic | 25.0% |
! | TGATCAATTGTATACTTGAT+TGG | - | chr8_3:61018273-61018292 | Msa1299690:CDS | 25.0% |
!!! | TTTTTTACATGAAAGGGTTT+TGG | + | chr8_3:61018520-61018539 | None:intergenic | 25.0% |
!! | GTTTTTCTTGGAAAAAATAG+AGG | - | chr8_3:61019235-61019254 | Msa1299690:intron | 25.0% |
!! | AGGTGATTAACAAAAGTTTT+TGG | - | chr8_3:61019255-61019274 | Msa1299690:intron | 25.0% |
!! | GGTGATTAACAAAAGTTTTT+GGG | - | chr8_3:61019256-61019275 | Msa1299690:intron | 25.0% |
! | TTCAATTAAAGAGTTTGATG+CGG | - | chr8_3:61019341-61019360 | Msa1299690:intron | 25.0% |
! | AAGAATATGGAACTATAAGT+TGG | - | chr8_3:61019506-61019525 | Msa1299690:intron | 25.0% |
! | TCATTCTAACTTAAAGCTTT+AGG | + | chr8_3:61019565-61019584 | None:intergenic | 25.0% |
! | TAGATCCTTTAACAATGTTT+AGG | + | chr8_3:61019696-61019715 | None:intergenic | 25.0% |
! | AAATAATATTTCTTGTTCGC+AGG | - | chr8_3:61019789-61019808 | Msa1299690:intron | 25.0% |
!!! | GTGTGACCTTTTTATTTTTT+TGG | - | chr8_3:61019889-61019908 | Msa1299690:intron | 25.0% |
!!! | TTTTGGTTTGAGTATGTATT+AGG | - | chr8_3:61019906-61019925 | Msa1299690:CDS | 25.0% |
! | GGTAATTGATAAATTATGGT+CGG | + | chr8_3:61020017-61020036 | None:intergenic | 25.0% |
! | ACAGGGTAATTGATAAATTA+TGG | + | chr8_3:61020021-61020040 | None:intergenic | 25.0% |
!!! | GTATATTAGCTTTCTCTTTT+GGG | - | chr8_3:61020092-61020111 | Msa1299690:intron | 25.0% |
!! | AGTTGATGAAGAAGAGAAAA+GGG | + | chr8_3:61015493-61015512 | None:intergenic | 30.0% |
!! | AAGTTGATGAAGAAGAGAAA+AGG | + | chr8_3:61015494-61015513 | None:intergenic | 30.0% |
ATTAGGTTAACCTAATTTGG+TGG | + | chr8_3:61015718-61015737 | None:intergenic | 30.0% | |
! | AGCAGAAGTATAATGAGATT+AGG | - | chr8_3:61015832-61015851 | Msa1299690:three_prime_UTR | 30.0% |
TCAAATCTATTCCTGATTTC+TGG | - | chr8_3:61015886-61015905 | Msa1299690:three_prime_UTR | 30.0% | |
!! | TTGGTTTGTTTGTATGATTC+TGG | - | chr8_3:61016152-61016171 | Msa1299690:intron | 30.0% |
! | GTATGATTCTGGAAATTACT+CGG | - | chr8_3:61016163-61016182 | Msa1299690:intron | 30.0% |
! | AAAACGAAACAGAATGGTTT+TGG | - | chr8_3:61016237-61016256 | Msa1299690:intron | 30.0% |
TACTTTGATTCCATGGAAAA+TGG | + | chr8_3:61016268-61016287 | None:intergenic | 30.0% | |
GTGATATTACTTTGATTCCA+TGG | + | chr8_3:61016275-61016294 | None:intergenic | 30.0% | |
!!! | GGTTTTGTTCCTTTGATTAA+CGG | - | chr8_3:61016398-61016417 | Msa1299690:intron | 30.0% |
TCTTGAGGTTGAAGATAATA+AGG | - | chr8_3:61016486-61016505 | Msa1299690:intron | 30.0% | |
GATAATAAGGATGTCAAATC+TGG | - | chr8_3:61016499-61016518 | Msa1299690:intron | 30.0% | |
! | TTTTCAAATTTTCGGAAGAG+GGG | + | chr8_3:61016563-61016582 | None:intergenic | 30.0% |
! | GATTTTCAAATTTTCGGAAG+AGG | + | chr8_3:61016565-61016584 | None:intergenic | 30.0% |
GTCAGTAGAAAATCAACATT+TGG | + | chr8_3:61016659-61016678 | None:intergenic | 30.0% | |
TCTGAACATGAAATGATTAC+TGG | + | chr8_3:61016691-61016710 | None:intergenic | 30.0% | |
! | TTGCCTTCTTTCCATTTTAT+GGG | + | chr8_3:61016803-61016822 | None:intergenic | 30.0% |
GATTTGAAGAAGTTTCACAT+TGG | + | chr8_3:61016899-61016918 | None:intergenic | 30.0% | |
TTCTTCAAATCTACATGACA+TGG | - | chr8_3:61016908-61016927 | Msa1299690:intron | 30.0% | |
!! | CTTAAACTTGCTAAAAGTAG+AGG | - | chr8_3:61016936-61016955 | Msa1299690:intron | 30.0% |
TGAGTGATACTTTACTATTG+CGG | + | chr8_3:61017075-61017094 | None:intergenic | 30.0% | |
AAAGTTACCCCACAATTAAA+AGG | - | chr8_3:61017106-61017125 | Msa1299690:intron | 30.0% | |
!! | ATTACAGGCCTTTTAATTGT+GGG | + | chr8_3:61017117-61017136 | None:intergenic | 30.0% |
ACAGATTCATACAACATTAC+AGG | + | chr8_3:61017132-61017151 | None:intergenic | 30.0% | |
TTGTATGAATCTGTTCACTT+GGG | - | chr8_3:61017138-61017157 | Msa1299690:intron | 30.0% | |
CTGTCGAAAAAAAAAGAAGA+AGG | + | chr8_3:61017414-61017433 | None:intergenic | 30.0% | |
!!! | TCTTCTTTTTTTTTCGACAG+AGG | - | chr8_3:61017414-61017433 | Msa1299690:intron | 30.0% |
ACATAATCCTGATACATGTA+GGG | - | chr8_3:61017466-61017485 | Msa1299690:intron | 30.0% | |
ACTAATATGCATCATGAACA+TGG | + | chr8_3:61017614-61017633 | None:intergenic | 30.0% | |
! | TATTAGTTTCCACTTGTTCT+TGG | - | chr8_3:61017627-61017646 | Msa1299690:intron | 30.0% |
GTCAATTAGGACATCAATAA+AGG | - | chr8_3:61017744-61017763 | Msa1299690:intron | 30.0% | |
AAACAAGCATCACTAATCAA+GGG | + | chr8_3:61017771-61017790 | None:intergenic | 30.0% | |
AAAACAAGCATCACTAATCA+AGG | + | chr8_3:61017772-61017791 | None:intergenic | 30.0% | |
! | TTGATTAGTGATGCTTGTTT+TGG | - | chr8_3:61017771-61017790 | Msa1299690:intron | 30.0% |
GAAGAAGAAAAAAGGAAAAG+AGG | + | chr8_3:61017812-61017831 | None:intergenic | 30.0% | |
TTTATTCCAATATGACCAAG+CGG | - | chr8_3:61017844-61017863 | Msa1299690:intron | 30.0% | |
CATAACACAATACAATACAG+AGG | - | chr8_3:61017900-61017919 | Msa1299690:intron | 30.0% | |
TATCTCCGTCAATTATTTGA+CGG | - | chr8_3:61018200-61018219 | Msa1299690:intron | 30.0% | |
TCAATTGTATACTTGATTGG+AGG | - | chr8_3:61018276-61018295 | Msa1299690:CDS | 30.0% | |
!!! | TGGTACCAATTTTTTCCAAT+AGG | - | chr8_3:61018334-61018353 | Msa1299690:intron | 30.0% |
!! | CAAATATGAAGGTGGTTTTA+AGG | + | chr8_3:61018615-61018634 | None:intergenic | 30.0% |
TAAAACCACCTTCATATTTG+AGG | - | chr8_3:61018615-61018634 | Msa1299690:intron | 30.0% | |
TCATTAGCACAAGAAATCAA+AGG | + | chr8_3:61018749-61018768 | None:intergenic | 30.0% | |
ACACTGTTGAAATAAATGAG+TGG | + | chr8_3:61019036-61019055 | None:intergenic | 30.0% | |
AGCTACAGTTAGAAACATAA+CGG | + | chr8_3:61019140-61019159 | None:intergenic | 30.0% | |
GTAGCTGATTGTAATATAAC+AGG | - | chr8_3:61019154-61019173 | Msa1299690:intron | 30.0% | |
AAAAAGTTATGCATTCAGCA+TGG | + | chr8_3:61019387-61019406 | None:intergenic | 30.0% | |
TGAAAATTAAAGTTCGGTTC+AGG | + | chr8_3:61019448-61019467 | None:intergenic | 30.0% | |
CGCGAATGAAAATTAAAGTT+CGG | + | chr8_3:61019454-61019473 | None:intergenic | 30.0% | |
! | TTAATTTTCATTCGCGATCT+AGG | - | chr8_3:61019458-61019477 | Msa1299690:intron | 30.0% |
TGATAACCTCCAAAAAAACT+TGG | - | chr8_3:61019641-61019660 | Msa1299690:intron | 30.0% | |
!!! | GATAACTTGCCAAGTTTTTT+TGG | + | chr8_3:61019653-61019672 | None:intergenic | 30.0% |
ATTAATGACAAACACAGCTT+TGG | - | chr8_3:61019753-61019772 | Msa1299690:CDS | 30.0% | |
AGGCAATTGAAAATGCATTA+TGG | - | chr8_3:61019864-61019883 | Msa1299690:intron | 30.0% | |
! | TTGAGTATGTATTAGGCTTT+TGG | - | chr8_3:61019913-61019932 | Msa1299690:CDS | 30.0% |
! | TGAGTATGTATTAGGCTTTT+GGG | - | chr8_3:61019914-61019933 | Msa1299690:CDS | 30.0% |
CTAGATGAAATTACTTGACA+GGG | + | chr8_3:61020038-61020057 | None:intergenic | 30.0% | |
ACTAGATGAAATTACTTGAC+AGG | + | chr8_3:61020039-61020058 | None:intergenic | 30.0% | |
TATCACTAAAATTGCACGAT+GGG | + | chr8_3:61020066-61020085 | None:intergenic | 30.0% | |
!! | TGCAATTTTAGTGATACTCA+TGG | - | chr8_3:61020070-61020089 | Msa1299690:intron | 30.0% |
!!! | GGTATATTAGCTTTCTCTTT+TGG | - | chr8_3:61020091-61020110 | Msa1299690:intron | 30.0% |
TTTATGCTAAGATACCCAAA+CGG | + | chr8_3:61020160-61020179 | None:intergenic | 30.0% | |
TTGGGTATCTTAGCATAAAA+AGG | - | chr8_3:61020161-61020180 | Msa1299690:CDS | 30.0% | |
TCTAAATTCTAACAGAGGAT+GGG | + | chr8_3:61020303-61020322 | None:intergenic | 30.0% | |
ATCTAAATTCTAACAGAGGA+TGG | + | chr8_3:61020304-61020323 | None:intergenic | 30.0% | |
CAACATCTAAATTCTAACAG+AGG | + | chr8_3:61020308-61020327 | None:intergenic | 30.0% | |
! | ATCAACTTCTTCGGGATTTT+CGG | + | chr8_3:61015588-61015607 | None:intergenic | 35.0% |
! | AAAAAAACGGTACCTTTTCG+AGG | + | chr8_3:61015658-61015677 | None:intergenic | 35.0% |
TAATGATGAAGCGAGTGATA+AGG | - | chr8_3:61015797-61015816 | Msa1299690:three_prime_UTR | 35.0% | |
GTATAATGAGATTAGGAAGC+CGG | - | chr8_3:61015839-61015858 | Msa1299690:three_prime_UTR | 35.0% | |
! | GTTTTCCATGTTGTTACGTT+TGG | - | chr8_3:61016133-61016152 | Msa1299690:intron | 35.0% |
ACAAACCAAACGTAACAACA+TGG | + | chr8_3:61016141-61016160 | None:intergenic | 35.0% | |
!! | TTTGGTTTCACCATTTTCCA+TGG | - | chr8_3:61016255-61016274 | Msa1299690:intron | 35.0% |
AAACCTAGCAATTGTTCAGA+AGG | + | chr8_3:61016383-61016402 | None:intergenic | 35.0% | |
CTTTGATTAACGGTTCTGTT+GGG | - | chr8_3:61016408-61016427 | Msa1299690:intron | 35.0% | |
! | CAAGTATTTGAGTTCTCTTG+AGG | - | chr8_3:61016471-61016490 | Msa1299690:intron | 35.0% |
! | TTTCAAATTTTCGGAAGAGG+GGG | + | chr8_3:61016562-61016581 | None:intergenic | 35.0% |
GAATCCTCAAAATAGGGATT+GGG | + | chr8_3:61016722-61016741 | None:intergenic | 35.0% | |
TGAATCCTCAAAATAGGGAT+TGG | + | chr8_3:61016723-61016742 | None:intergenic | 35.0% | |
! | TGCCTTCTTTCCATTTTATG+GGG | + | chr8_3:61016802-61016821 | None:intergenic | 35.0% |
! | CTTGCCTTCTTTCCATTTTA+TGG | + | chr8_3:61016804-61016823 | None:intergenic | 35.0% |
CATAAAATGGAAAGAAGGCA+AGG | - | chr8_3:61016802-61016821 | Msa1299690:intron | 35.0% | |
! | AAAGTATCACTCAAGTTTGC+AGG | - | chr8_3:61017082-61017101 | Msa1299690:intron | 35.0% |
!! | TTACAGGCCTTTTAATTGTG+GGG | + | chr8_3:61017116-61017135 | None:intergenic | 35.0% |
!! | CATTACAGGCCTTTTAATTG+TGG | + | chr8_3:61017118-61017137 | None:intergenic | 35.0% |
GTTGTATGAATCTGTTCACT+TGG | - | chr8_3:61017137-61017156 | Msa1299690:intron | 35.0% | |
TGTATGAATCTGTTCACTTG+GGG | - | chr8_3:61017139-61017158 | Msa1299690:intron | 35.0% | |
AAGACCTCTACAAGAACAAA+TGG | - | chr8_3:61017240-61017259 | Msa1299690:intron | 35.0% | |
AGACCTCTACAAGAACAAAT+GGG | - | chr8_3:61017241-61017260 | Msa1299690:intron | 35.0% | |
GATAGTTTAAGGGAAACTGT+TGG | - | chr8_3:61017288-61017307 | Msa1299690:intron | 35.0% | |
TTGTTGAGTGATCCATATAG+TGG | - | chr8_3:61017367-61017386 | Msa1299690:intron | 35.0% | |
CACATAATCCTGATACATGT+AGG | - | chr8_3:61017465-61017484 | Msa1299690:intron | 35.0% | |
ATGAGAAGAAAGGGAACAAA+AGG | - | chr8_3:61017509-61017528 | Msa1299690:intron | 35.0% | |
! | TTTGTTATCATGGACAAAGC+TGG | + | chr8_3:61017703-61017722 | None:intergenic | 35.0% |
!! | AACTCGTGAGTTTGTTATCA+TGG | + | chr8_3:61017713-61017732 | None:intergenic | 35.0% |
TTATAATCCTGCCGTCAATT+AGG | - | chr8_3:61017731-61017750 | Msa1299690:intron | 35.0% | |
! | ATCCCACAGTTTGATGATTA+CGG | - | chr8_3:61017955-61017974 | Msa1299690:intron | 35.0% |
ATCCGTAATCATCAAACTGT+GGG | + | chr8_3:61017960-61017979 | None:intergenic | 35.0% | |
TATCCGTAATCATCAAACTG+TGG | + | chr8_3:61017961-61017980 | None:intergenic | 35.0% | |
! | TAGTAATGGGAAAGTTGTTC+AGG | + | chr8_3:61018009-61018028 | None:intergenic | 35.0% |
TCCATAGCAACGATAGTAAT+GGG | + | chr8_3:61018022-61018041 | None:intergenic | 35.0% | |
TTCCATAGCAACGATAGTAA+TGG | + | chr8_3:61018023-61018042 | None:intergenic | 35.0% | |
GCGAAAGAATCATATTGTAG+CGG | - | chr8_3:61018067-61018086 | Msa1299690:intron | 35.0% | |
TGACGGAGATAATTCTTCAA+AGG | + | chr8_3:61018191-61018210 | None:intergenic | 35.0% | |
TGTATACTTGATTGGAGGTT+TGG | - | chr8_3:61018281-61018300 | Msa1299690:CDS | 35.0% | |
GTATACTTGATTGGAGGTTT+GGG | - | chr8_3:61018282-61018301 | Msa1299690:CDS | 35.0% | |
AGGGACCTATTGGAAAAAAT+TGG | + | chr8_3:61018342-61018361 | None:intergenic | 35.0% | |
!! | GTGAAAAGTATTGACCTTTC+AGG | - | chr8_3:61018446-61018465 | Msa1299690:intron | 35.0% |
! | TAAAGGCTTAAAGCTCCTTT+TGG | - | chr8_3:61018694-61018713 | Msa1299690:intron | 35.0% |
! | TTCAATGAAGCGTTTCCAAA+AGG | + | chr8_3:61018712-61018731 | None:intergenic | 35.0% |
GAAACGCTTCATTGAACAAA+TGG | - | chr8_3:61018716-61018735 | Msa1299690:intron | 35.0% | |
ATGAATGCAGTTTCCTTAGT+TGG | - | chr8_3:61018765-61018784 | Msa1299690:intron | 35.0% | |
AGAAACTACTTGAGAAGAAC+AGG | + | chr8_3:61018853-61018872 | None:intergenic | 35.0% | |
GCTGATTGTAATATAACAGG+AGG | - | chr8_3:61019157-61019176 | Msa1299690:intron | 35.0% | |
!! | AATGGAAGTTCCGTTTTTCT+TGG | - | chr8_3:61019223-61019242 | Msa1299690:intron | 35.0% |
!!! | AACTTGCCAAGTTTTTTTGG+AGG | + | chr8_3:61019650-61019669 | None:intergenic | 35.0% |
GTATCACTAAAATTGCACGA+TGG | + | chr8_3:61020067-61020086 | None:intergenic | 35.0% | |
! | TTCCGACTATAGTTAACTTG+CGG | + | chr8_3:61020215-61020234 | None:intergenic | 35.0% |
CAAGTTAACTATAGTCGGAA+AGG | - | chr8_3:61020215-61020234 | Msa1299690:CDS | 35.0% | |
! | AGCTTTATGCATAACTTTCC+TGG | - | chr8_3:61020238-61020257 | Msa1299690:CDS | 35.0% |
CTAAATTCTAACAGAGGATG+GGG | + | chr8_3:61020302-61020321 | None:intergenic | 35.0% | |
TAGATGTTGATATTCGCCAT+CGG | - | chr8_3:61020319-61020338 | Msa1299690:five_prime_UTR | 35.0% | |
TGATGAAGAAGAGAAAAGGG+TGG | + | chr8_3:61015490-61015509 | None:intergenic | 40.0% | |
AGTTCAGCATCAACTTCTTC+GGG | + | chr8_3:61015596-61015615 | None:intergenic | 40.0% | |
GAGTTCAGCATCAACTTCTT+CGG | + | chr8_3:61015597-61015616 | None:intergenic | 40.0% | |
GATCTCTTGCAATTTCTCGA+TGG | + | chr8_3:61015627-61015646 | None:intergenic | 40.0% | |
ACAGCATTCAACCAGAAATC+AGG | + | chr8_3:61015900-61015919 | None:intergenic | 40.0% | |
CTCATTCAGTAGTTCACTGA+GGG | + | chr8_3:61016055-61016074 | None:intergenic | 40.0% | |
GTGGACAAAACGAAACAGAA+TGG | - | chr8_3:61016231-61016250 | Msa1299690:intron | 40.0% | |
CCAACAGAACCGTTAATCAA+AGG | + | chr8_3:61016410-61016429 | None:intergenic | 40.0% | |
CCTTTGATTAACGGTTCTGT+TGG | - | chr8_3:61016407-61016426 | Msa1299690:intron | 40.0% | |
AGAAGAAGGGCAACTTACAA+GGG | + | chr8_3:61016536-61016555 | None:intergenic | 40.0% | |
! | CAATCCCAATCCCTATTTTG+AGG | - | chr8_3:61016715-61016734 | Msa1299690:intron | 40.0% |
! | ACTTTTACCTTCCGTGAAGA+AGG | - | chr8_3:61016755-61016774 | Msa1299690:intron | 40.0% |
TCTCTGTTGTTCCTTCTTCA+CGG | + | chr8_3:61016769-61016788 | None:intergenic | 40.0% | |
ACCCCCATAAAATGGAAAGA+AGG | - | chr8_3:61016797-61016816 | Msa1299690:intron | 40.0% | |
! | GCCTTCTTTCCATTTTATGG+GGG | + | chr8_3:61016801-61016820 | None:intergenic | 40.0% |
AATGGAAAGAAGGCAAGGTA+AGG | - | chr8_3:61016807-61016826 | Msa1299690:intron | 40.0% | |
ATGGAAAGAAGGCAAGGTAA+GGG | - | chr8_3:61016808-61016827 | Msa1299690:intron | 40.0% | |
TCGAACTTGATGAGATGCAT+AGG | - | chr8_3:61016974-61016993 | Msa1299690:intron | 40.0% | |
CGAACTTGATGAGATGCATA+GGG | - | chr8_3:61016975-61016994 | Msa1299690:intron | 40.0% | |
GAGATGCATAGGGAAAATAG+TGG | - | chr8_3:61016985-61017004 | Msa1299690:CDS | 40.0% | |
GTATGAATCTGTTCACTTGG+GGG | - | chr8_3:61017140-61017159 | Msa1299690:intron | 40.0% | |
GACCTCTACAAGAACAAATG+GGG | - | chr8_3:61017242-61017261 | Msa1299690:intron | 40.0% | |
TCTACAAGAACAAATGGGGA+GGG | - | chr8_3:61017246-61017265 | Msa1299690:intron | 40.0% | |
! | AGGTCTTTTACCATGAGCTT+GGG | + | chr8_3:61017394-61017413 | None:intergenic | 40.0% |
! | AAGGTCTTTTACCATGAGCT+TGG | + | chr8_3:61017395-61017414 | None:intergenic | 40.0% |
TACATGTAGGGAATACCCAA+TGG | - | chr8_3:61017478-61017497 | Msa1299690:intron | 40.0% | |
TTCTCATGATTGTCGCCATT+GGG | + | chr8_3:61017496-61017515 | None:intergenic | 40.0% | |
GCGACAATCATGAGAAGAAA+GGG | - | chr8_3:61017500-61017519 | Msa1299690:intron | 40.0% | |
ATATTTCCTTACCTTCCGCT+TGG | + | chr8_3:61017862-61017881 | None:intergenic | 40.0% | |
AGCGGAAGGTAAGGAAATAT+TGG | - | chr8_3:61017862-61017881 | Msa1299690:intron | 40.0% | |
GCGGAAGGTAAGGAAATATT+GGG | - | chr8_3:61017863-61017882 | Msa1299690:intron | 40.0% | |
!! | GAAAGTTGTTCAGGTTGTTG+AGG | + | chr8_3:61018000-61018019 | None:intergenic | 40.0% |
TCCCATTACTATCGTTGCTA+TGG | - | chr8_3:61018018-61018037 | Msa1299690:intron | 40.0% | |
TTTCGCTATCAGTGCAATAG+CGG | + | chr8_3:61018053-61018072 | None:intergenic | 40.0% | |
TCCGTCAATTATTTGACGGA+TGG | - | chr8_3:61018204-61018223 | Msa1299690:intron | 40.0% | |
GCCATCCGTCAAATAATTGA+CGG | + | chr8_3:61018208-61018227 | None:intergenic | 40.0% | |
TGAATCCACCCGTCAAATAT+GGG | + | chr8_3:61018231-61018250 | None:intergenic | 40.0% | |
TTGAATCCACCCGTCAAATA+TGG | + | chr8_3:61018232-61018251 | None:intergenic | 40.0% | |
! | TATTTGACGGGTGGATTCAA+TGG | - | chr8_3:61018232-61018251 | Msa1299690:intron | 40.0% |
!! | ATGGTGGATGTTTAAGAGTC+TGG | - | chr8_3:61018314-61018333 | Msa1299690:intron | 40.0% |
! | GCAAAGCACACAAGTTTTAC+TGG | + | chr8_3:61018366-61018385 | None:intergenic | 40.0% |
GAGACTGCTCTTGACAATAT+GGG | + | chr8_3:61018399-61018418 | None:intergenic | 40.0% | |
AGAGACTGCTCTTGACAATA+TGG | + | chr8_3:61018400-61018419 | None:intergenic | 40.0% | |
!! | TGGAAGAGTATCTTTATGCC+TGG | - | chr8_3:61018475-61018494 | Msa1299690:intron | 40.0% |
AGCAAGACAGAGAGTAAAGT+AGG | - | chr8_3:61018568-61018587 | Msa1299690:intron | 40.0% | |
TCTGTCCTCAAATATGAAGG+TGG | + | chr8_3:61018623-61018642 | None:intergenic | 40.0% | |
GCTTCTGTCCTCAAATATGA+AGG | + | chr8_3:61018626-61018645 | None:intergenic | 40.0% | |
CACAGTCACAAAACCAACTA+AGG | + | chr8_3:61018781-61018800 | None:intergenic | 40.0% | |
CTGTGAGCAGAAAGATGATA+TGG | - | chr8_3:61018796-61018815 | Msa1299690:intron | 40.0% | |
ACACGTGGAAAACAAAGACA+GGG | + | chr8_3:61018888-61018907 | None:intergenic | 40.0% | |
ATTAGTCAAGTAGAGACACG+TGG | + | chr8_3:61018903-61018922 | None:intergenic | 40.0% | |
GCAGCTTGCAGAATTAATCA+AGG | - | chr8_3:61018993-61019012 | Msa1299690:CDS | 40.0% | |
CTCATCATCAGCTTCATCAT+CGG | + | chr8_3:61019201-61019220 | None:intergenic | 40.0% | |
! | TGAAGCTGATGATGAGGTAA+TGG | - | chr8_3:61019205-61019224 | Msa1299690:intron | 40.0% |
GAGTTAATGCCCTGAAAGAA+AGG | + | chr8_3:61019954-61019973 | None:intergenic | 40.0% | |
TACTGCATTTACTAGCCGTT+TGG | - | chr8_3:61020142-61020161 | Msa1299690:intron | 40.0% | |
ACTGCATTTACTAGCCGTTT+GGG | - | chr8_3:61020143-61020162 | Msa1299690:intron | 40.0% | |
TCCCGCAAGTTAACTATAGT+CGG | - | chr8_3:61020210-61020229 | Msa1299690:CDS | 40.0% | |
!! | TCCGACTATAGTTAACTTGC+GGG | + | chr8_3:61020214-61020233 | None:intergenic | 40.0% |
GCATTTATGTTTCAGTTGCC+AGG | + | chr8_3:61020259-61020278 | None:intergenic | 40.0% | |
AGATGTTGATATTCGCCATC+GGG | - | chr8_3:61020320-61020339 | Msa1299690:five_prime_UTR | 40.0% | |
!! | GAAAACGCGAAAGGGTGTTA+GGG | + | chr8_3:61015464-61015483 | None:intergenic | 45.0% |
!! | TGAAAACGCGAAAGGGTGTT+AGG | + | chr8_3:61015465-61015484 | None:intergenic | 45.0% |
GGTGGAATGAAAACGCGAAA+GGG | + | chr8_3:61015472-61015491 | None:intergenic | 45.0% | |
CTCTTCTTCATCAACTTCCG+CGG | - | chr8_3:61015497-61015516 | Msa1299690:three_prime_UTR | 45.0% | |
TTCGGTGAGTTTCTGCTTCT+TGG | + | chr8_3:61015570-61015589 | None:intergenic | 45.0% | |
CTTGCAATTTCTCGATGGAG+AGG | + | chr8_3:61015622-61015641 | None:intergenic | 45.0% | |
GATCCAAGATGACCTCGAAA+AGG | - | chr8_3:61015643-61015662 | Msa1299690:three_prime_UTR | 45.0% | |
!! | GTACCTTTTCGAGGTCATCT+TGG | + | chr8_3:61015649-61015668 | None:intergenic | 45.0% |
TCGTTCCGCTTATCGTAAAC+CGG | + | chr8_3:61015861-61015880 | None:intergenic | 45.0% | |
TTCAGTAGTTCACTGAGGGT+AGG | + | chr8_3:61016051-61016070 | None:intergenic | 45.0% | |
CCTCATTCAGTAGTTCACTG+AGG | + | chr8_3:61016056-61016075 | None:intergenic | 45.0% | |
CCTCAGTGAACTACTGAATG+AGG | - | chr8_3:61016053-61016072 | Msa1299690:intron | 45.0% | |
AAATTACTCGGCGTGTTCTG+TGG | - | chr8_3:61016175-61016194 | Msa1299690:intron | 45.0% | |
! | TGTTTCGTTTTGTCCACGCT+GGG | + | chr8_3:61016228-61016247 | None:intergenic | 45.0% |
CTAGCAATTGTTCAGAAGGC+AGG | + | chr8_3:61016379-61016398 | None:intergenic | 45.0% | |
CTGCCTTCTGAACAATTGCT+AGG | - | chr8_3:61016377-61016396 | Msa1299690:intron | 45.0% | |
GAGAAGAAGGGCAACTTACA+AGG | + | chr8_3:61016537-61016556 | None:intergenic | 45.0% | |
TGTTGTTCCTTCTTCACGGA+AGG | + | chr8_3:61016765-61016784 | None:intergenic | 45.0% | |
TCACTGCTACCCCCATAAAA+TGG | - | chr8_3:61016789-61016808 | Msa1299690:CDS | 45.0% | |
CTCCCCATTTGTTCTTGTAG+AGG | + | chr8_3:61017247-61017266 | None:intergenic | 45.0% | |
CTCTACAAGAACAAATGGGG+AGG | - | chr8_3:61017245-61017264 | Msa1299690:intron | 45.0% | |
ATGAGCTTGGGTCCACTATA+TGG | + | chr8_3:61017382-61017401 | None:intergenic | 45.0% | |
!! | ATATAGTGGACCCAAGCTCA+TGG | - | chr8_3:61017381-61017400 | Msa1299690:intron | 45.0% |
GGGTATTCCCTACATGTATC+AGG | + | chr8_3:61017476-61017495 | None:intergenic | 45.0% | |
CTTCTCATGATTGTCGCCAT+TGG | + | chr8_3:61017497-61017516 | None:intergenic | 45.0% | |
GGCGACAATCATGAGAAGAA+AGG | - | chr8_3:61017499-61017518 | Msa1299690:intron | 45.0% | |
AAAGGTCAGCCAAGAACAAG+TGG | + | chr8_3:61017639-61017658 | None:intergenic | 45.0% | |
TTGATGTCCTAATTGACGGC+AGG | + | chr8_3:61017741-61017760 | None:intergenic | 45.0% | |
TTCCAATATGACCAAGCGGA+AGG | - | chr8_3:61017848-61017867 | Msa1299690:intron | 45.0% | |
TACCTTCCGCTTGGTCATAT+TGG | + | chr8_3:61017853-61017872 | None:intergenic | 45.0% | |
ATATGACCAAGCGGAAGGTA+AGG | - | chr8_3:61017853-61017872 | Msa1299690:intron | 45.0% | |
!! | TTGTTCAGGTTGTTGAGGTC+GGG | + | chr8_3:61017995-61018014 | None:intergenic | 45.0% |
!! | GTTGTTCAGGTTGTTGAGGT+CGG | + | chr8_3:61017996-61018015 | None:intergenic | 45.0% |
! | ATAGCGGAGCTATTGTGTAG+CGG | + | chr8_3:61018117-61018136 | None:intergenic | 45.0% |
GAATCCACCCGTCAAATATG+GGG | + | chr8_3:61018230-61018249 | None:intergenic | 45.0% | |
! | TTGATTGGAGGTTTGGGATC+AGG | - | chr8_3:61018288-61018307 | Msa1299690:CDS | 45.0% |
! | TGATTGGAGGTTTGGGATCA+GGG | - | chr8_3:61018289-61018308 | Msa1299690:CDS | 45.0% |
! | TTTTACTGGCAGGGACCTAT+TGG | + | chr8_3:61018352-61018371 | None:intergenic | 45.0% |
! | GCACACAAGTTTTACTGGCA+GGG | + | chr8_3:61018361-61018380 | None:intergenic | 45.0% |
! | AGCACACAAGTTTTACTGGC+AGG | + | chr8_3:61018362-61018381 | None:intergenic | 45.0% |
ATTGACCTTTCAGGAGTCGA+TGG | - | chr8_3:61018455-61018474 | Msa1299690:intron | 45.0% | |
! | AGAGTATCTTTATGCCTGGC+TGG | - | chr8_3:61018479-61018498 | Msa1299690:intron | 45.0% |
GACACGTGGAAAACAAAGAC+AGG | + | chr8_3:61018889-61018908 | None:intergenic | 45.0% | |
! | CGATGATGAAGCTGATGATG+AGG | - | chr8_3:61019199-61019218 | Msa1299690:intron | 45.0% |
CTTCTAGCAGCGATTTCTGA+AGG | - | chr8_3:61019421-61019440 | Msa1299690:intron | 45.0% | |
TTGTTCGCAGGAAAAAGACG+AGG | - | chr8_3:61019801-61019820 | Msa1299690:intron | 45.0% | |
TCTGAAGAGGATGACGAAGA+GGG | - | chr8_3:61019829-61019848 | Msa1299690:intron | 45.0% | |
AGACCATGGCCTTTCTTTCA+GGG | - | chr8_3:61019942-61019961 | Msa1299690:CDS | 45.0% | |
CATTAACTCATGTCAGCGAG+TGG | - | chr8_3:61019965-61019984 | Msa1299690:CDS | 45.0% | |
!! | GACTATAGTTAACTTGCGGG+AGG | + | chr8_3:61020211-61020230 | None:intergenic | 45.0% |
GGGTGGAATGAAAACGCGAA+AGG | + | chr8_3:61015473-61015492 | None:intergenic | 50.0% | |
TGTGTGAGTGAAGATTGCCG+CGG | + | chr8_3:61015517-61015536 | None:intergenic | 50.0% | |
GGCAATCTTCACTCACACAG+AGG | - | chr8_3:61015518-61015537 | Msa1299690:three_prime_UTR | 50.0% | |
! | GGAAGCCGGTTTACGATAAG+CGG | - | chr8_3:61015853-61015872 | Msa1299690:three_prime_UTR | 50.0% |
GTAGTTCACTGAGGGTAGGA+TGG | + | chr8_3:61016047-61016066 | None:intergenic | 50.0% | |
!!! | GTAGTAGTTTTGACCCAGCG+TGG | - | chr8_3:61016212-61016231 | Msa1299690:intron | 50.0% |
! | CTGTTTCGTTTTGTCCACGC+TGG | + | chr8_3:61016229-61016248 | None:intergenic | 50.0% |
GAAGAGGGGGAAGAGAAGAA+GGG | + | chr8_3:61016549-61016568 | None:intergenic | 50.0% | |
CAAGAACAAATGGGGAGGGT+TGG | - | chr8_3:61017250-61017269 | Msa1299690:intron | 50.0% | |
AAAGGCCTCCTGTTGATGTC+AGG | - | chr8_3:61017527-61017546 | Msa1299690:intron | 50.0% | |
ACCAACCTGACATCAACAGG+AGG | + | chr8_3:61017535-61017554 | None:intergenic | 50.0% | |
GACACCAACCTGACATCAAC+AGG | + | chr8_3:61017538-61017557 | None:intergenic | 50.0% | |
CATGGACAAAGCTGGAGAGT+GGG | + | chr8_3:61017695-61017714 | None:intergenic | 50.0% | |
TCATGGACAAAGCTGGAGAG+TGG | + | chr8_3:61017696-61017715 | None:intergenic | 50.0% | |
TAGCGGAGCTATTGTGTAGC+GGG | + | chr8_3:61018116-61018135 | None:intergenic | 50.0% | |
ACGGATGGCCCCATATTTGA+CGG | - | chr8_3:61018219-61018238 | Msa1299690:intron | 50.0% | |
! | GATTGGAGGTTTGGGATCAG+GGG | - | chr8_3:61018290-61018309 | Msa1299690:CDS | 50.0% |
!! | CTCTTCCATCGACTCCTGAA+AGG | + | chr8_3:61018463-61018482 | None:intergenic | 50.0% |
TATGGCTGACATTCACGACG+AGG | - | chr8_3:61018814-61018833 | Msa1299690:intron | 50.0% | |
TCATCGGCATCCTCTTCATC+AGG | + | chr8_3:61019185-61019204 | None:intergenic | 50.0% | |
TGCGGTGATACTGTGCATAC+TGG | - | chr8_3:61019359-61019378 | Msa1299690:intron | 50.0% | |
! | CTCTGAAGAGGATGACGAAG+AGG | - | chr8_3:61019828-61019847 | Msa1299690:intron | 50.0% |
! | TGACGAAGAGGGTGATGATG+AGG | - | chr8_3:61019840-61019859 | Msa1299690:intron | 50.0% |
! | GAAGAGGGTGATGATGAGGA+AGG | - | chr8_3:61019844-61019863 | Msa1299690:intron | 50.0% |
CAGACCATGGCCTTTCTTTC+AGG | - | chr8_3:61019941-61019960 | Msa1299690:CDS | 50.0% | |
ATGCCCTGAAAGAAAGGCCA+TGG | + | chr8_3:61019948-61019967 | None:intergenic | 50.0% | |
GAGCTACACAAGCCAGTTAG+TGG | - | chr8_3:61019987-61020006 | Msa1299690:CDS | 50.0% | |
ATGGTCGGAGAACCACTAAC+TGG | + | chr8_3:61020002-61020021 | None:intergenic | 50.0% | |
ACACAGAGGCGAAGCGAAGA+TGG | - | chr8_3:61015532-61015551 | Msa1299690:three_prime_UTR | 55.0% | |
AGAGGCGAAGCGAAGATGGT+TGG | - | chr8_3:61015536-61015555 | Msa1299690:three_prime_UTR | 55.0% | |
GGAAGAGGGGGAAGAGAAGA+AGG | + | chr8_3:61016550-61016569 | None:intergenic | 55.0% | |
ACTTGGGGGTTGCACAAGAC+AGG | - | chr8_3:61017154-61017173 | Msa1299690:intron | 55.0% | |
CTTGGGGGTTGCACAAGACA+GGG | - | chr8_3:61017155-61017174 | Msa1299690:intron | 55.0% | |
GCCTCCTGTTGATGTCAGGT+TGG | - | chr8_3:61017531-61017550 | Msa1299690:intron | 55.0% | |
GTTGAGGTCGGGAACGAACA+GGG | + | chr8_3:61017984-61018003 | None:intergenic | 55.0% | |
TGTTGAGGTCGGGAACGAAC+AGG | + | chr8_3:61017985-61018004 | None:intergenic | 55.0% | |
CGGATGGCCCCATATTTGAC+GGG | - | chr8_3:61018220-61018239 | Msa1299690:intron | 55.0% | |
ATGGCCCCATATTTGACGGG+TGG | - | chr8_3:61018223-61018242 | Msa1299690:intron | 55.0% | |
! | GAGGTTTGGGATCAGGGGTA+TGG | - | chr8_3:61018295-61018314 | Msa1299690:CDS | 55.0% |
! | GTTTGGGATCAGGGGTATGG+TGG | - | chr8_3:61018298-61018317 | Msa1299690:CDS | 55.0% |
AGAGTAATGCACAGCCAGCC+AGG | + | chr8_3:61018496-61018515 | None:intergenic | 55.0% | |
ACAGGAGGAGCCTGATGAAG+AGG | - | chr8_3:61019172-61019191 | Msa1299690:intron | 55.0% | |
! | AGACGAGGACGACTCTGAAG+AGG | - | chr8_3:61019816-61019835 | Msa1299690:intron | 55.0% |
! | GCTTTTGGGCGTGCAGACCA+TGG | - | chr8_3:61019928-61019947 | Msa1299690:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 61015456 | 61020356 | 61015456 | ID=Msa1299690;Name=Msa1299690 |
chr8_3 | mRNA | 61015456 | 61020356 | 61015456 | ID=Msa1299690-mRNA-1;Parent=Msa1299690;Name=Msa1299690-mRNA-1;_AED=0.03;_eAED=0.03;_QI=95|1|1|1|1|1|10|483|265 |
chr8_3 | exon | 61015456 | 61016001 | 61015456 | ID=Msa1299690-mRNA-1:exon:17967;Parent=Msa1299690-mRNA-1 |
chr8_3 | exon | 61016556 | 61016636 | 61016556 | ID=Msa1299690-mRNA-1:exon:17966;Parent=Msa1299690-mRNA-1 |
chr8_3 | exon | 61016759 | 61016815 | 61016759 | ID=Msa1299690-mRNA-1:exon:17965;Parent=Msa1299690-mRNA-1 |
chr8_3 | exon | 61016977 | 61017037 | 61016977 | ID=Msa1299690-mRNA-1:exon:17964;Parent=Msa1299690-mRNA-1 |
chr8_3 | exon | 61018264 | 61018325 | 61018264 | ID=Msa1299690-mRNA-1:exon:17963;Parent=Msa1299690-mRNA-1 |
chr8_3 | exon | 61018989 | 61019102 | 61018989 | ID=Msa1299690-mRNA-1:exon:17962;Parent=Msa1299690-mRNA-1 |
chr8_3 | exon | 61019275 | 61019346 | 61019275 | ID=Msa1299690-mRNA-1:exon:17961;Parent=Msa1299690-mRNA-1 |
chr8_3 | exon | 61019726 | 61019776 | 61019726 | ID=Msa1299690-mRNA-1:exon:17960;Parent=Msa1299690-mRNA-1 |
chr8_3 | exon | 61019895 | 61020017 | 61019895 | ID=Msa1299690-mRNA-1:exon:17959;Parent=Msa1299690-mRNA-1 |
chr8_3 | exon | 61020148 | 61020356 | 61020148 | ID=Msa1299690-mRNA-1:exon:17958;Parent=Msa1299690-mRNA-1 |
chr8_3 | five_prime_UTR | 61020262 | 61020356 | 61020262 | ID=Msa1299690-mRNA-1:five_prime_utr;Parent=Msa1299690-mRNA-1 |
chr8_3 | CDS | 61020148 | 61020261 | 61020148 | ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1 |
chr8_3 | CDS | 61019895 | 61020017 | 61019895 | ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1 |
chr8_3 | CDS | 61019726 | 61019776 | 61019726 | ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1 |
chr8_3 | CDS | 61019275 | 61019346 | 61019275 | ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1 |
chr8_3 | CDS | 61018989 | 61019102 | 61018989 | ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1 |
chr8_3 | CDS | 61018264 | 61018325 | 61018264 | ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1 |
chr8_3 | CDS | 61016977 | 61017037 | 61016977 | ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1 |
chr8_3 | CDS | 61016759 | 61016815 | 61016759 | ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1 |
chr8_3 | CDS | 61016556 | 61016636 | 61016556 | ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1 |
chr8_3 | CDS | 61015939 | 61016001 | 61015939 | ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1 |
chr8_3 | three_prime_UTR | 61015456 | 61015938 | 61015456 | ID=Msa1299690-mRNA-1:three_prime_utr;Parent=Msa1299690-mRNA-1 |
Gene Sequence |
Protein sequence |