AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1299690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299690 MtrunA17_Chr4g0060621 99.248 266 1 1 1 265 1 266 0.0 520
Msa1299690 MtrunA17_Chr3g0092521 78.281 221 45 1 1 218 1 221 9.42e-127 360
Msa1299690 MtrunA17_Chr4g0064221 62.868 272 81 5 5 265 105 367 7.19e-107 314
Msa1299690 MtrunA17_Chr6g0487861 48.810 84 42 1 57 139 2 85 4.63e-25 95.1
Msa1299690 MtrunA17_Chr6g0487691 48.810 84 42 1 57 139 2 85 4.63e-25 95.1
Msa1299690 MtrunA17_Chr6g0487501 39.496 119 59 2 100 206 38 155 3.06e-20 84.7
Msa1299690 MtrunA17_Chr2g0299501 27.957 186 103 4 5 160 30 214 1.01e-12 67.4
Msa1299690 MtrunA17_Chr2g0330141 27.568 185 102 4 7 160 30 213 3.50e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299690 AT1G18800.1 72.851 221 57 3 1 218 1 221 5.40e-112 323
Msa1299690 AT1G74560.1 73.171 205 53 2 17 219 22 226 4.57e-108 313
Msa1299690 AT1G74560.3 73.333 195 50 2 17 209 22 216 3.01e-102 298
Msa1299690 AT2G19480.2 26.380 163 91 3 26 160 55 216 9.78e-11 62.0
Msa1299690 AT2G19480.1 26.380 163 91 3 26 160 55 216 9.93e-11 62.0

Find 98 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGACCATGGCCTTTCTTTC+AGG 0.071837 8_3:-61015849 Msa1299690:three_prime_UTR
TCAAATCTATTCCTGATTTC+TGG 0.142000 8_3:-61019904 Msa1299690:CDS
GGTATATTAGCTTTCTCTTT+TGG 0.151187 8_3:-61015699 Msa1299690:three_prime_UTR
TTCGGTGAGTTTCTGCTTCT+TGG 0.176469 8_3:+61020223 None:intergenic
TTGAGTATGTATTAGGCTTT+TGG 0.206492 8_3:-61015877 Msa1299690:three_prime_UTR
TTGGGTATCTTAGCATAAAA+AGG 0.247822 8_3:-61015629 Msa1299690:three_prime_UTR
ACAGGGTAATTGATAAATTA+TGG 0.281625 8_3:+61015772 None:intergenic
TGCATGATTATAATTTATAT+TGG 0.287040 8_3:-61015514 Msa1299690:three_prime_UTR
AATTAATCAAGGATGATTTA+TGG 0.308424 8_3:-61016786 Msa1299690:CDS
TCTTGAGGTTGAAGATAATA+AGG 0.335371 8_3:-61019304 Msa1299690:CDS
AGCTTTATGCATAACTTTCC+TGG 0.337844 8_3:-61015552 Msa1299690:three_prime_UTR
TGAAAACGCGAAAGGGTGTT+AGG 0.338957 8_3:+61020328 None:intergenic
GATAATAAGGATGTCAAATC+TGG 0.344818 8_3:-61019291 Msa1299690:CDS
TACTGCATTTACTAGCCGTT+TGG 0.353047 8_3:-61015648 Msa1299690:three_prime_UTR
AGTTCAGCATCAACTTCTTC+GGG 0.365326 8_3:+61020197 None:intergenic
CTTCTCATGATTGTCGCCAT+TGG 0.369583 8_3:+61018296 None:intergenic
GAGTTCAGCATCAACTTCTT+CGG 0.373422 8_3:+61020196 None:intergenic
ATGAATGCAGTTTCCTTAGT+TGG 0.378489 8_3:-61017025 Msa1299690:intron
TTCTCATGATTGTCGCCATT+GGG 0.394389 8_3:+61018297 None:intergenic
AGGCAATTGAAAATGCATTA+TGG 0.398971 8_3:-61015926 Msa1299690:exon
TCCGACTATAGTTAACTTGC+GGG 0.399219 8_3:+61015579 None:intergenic
ACTGCATTTACTAGCCGTTT+GGG 0.400007 8_3:-61015647 Msa1299690:three_prime_UTR
TGAATCCTCAAAATAGGGAT+TGG 0.404769 8_3:+61019070 None:intergenic
AGACCATGGCCTTTCTTTCA+GGG 0.412109 8_3:-61015848 Msa1299690:three_prime_UTR
GAATCCTCAAAATAGGGATT+GGG 0.412238 8_3:+61019071 None:intergenic
GACACCAACCTGACATCAAC+AGG 0.420723 8_3:+61018255 None:intergenic
TCTCTGTTGTTCCTTCTTCA+CGG 0.428176 8_3:+61019024 None:intergenic
GCATTTATGTTTCAGTTGCC+AGG 0.432385 8_3:+61015534 None:intergenic
ACTAGATGAAATTACTTGAC+AGG 0.444435 8_3:+61015754 None:intergenic
AAGTTGATGAAGAAGAGAAA+AGG 0.450896 8_3:+61020299 None:intergenic
ACAGCATTCAACCAGAAATC+AGG 0.453818 8_3:+61019893 None:intergenic
TCATCGGCATCCTCTTCATC+AGG 0.453926 8_3:+61016608 None:intergenic
ATGGTCGGAGAACCACTAAC+TGG 0.454059 8_3:+61015791 None:intergenic
TCGTTCCGCTTATCGTAAAC+CGG 0.454701 8_3:+61019932 None:intergenic
GAGTTAATGCCCTGAAAGAA+AGG 0.464958 8_3:+61015839 None:intergenic
ATGAGAAGAAAGGGAACAAA+AGG 0.469606 8_3:-61018281 Msa1299690:CDS
AGATGTTGATATTCGCCATC+GGG 0.470851 8_3:-61015470 Msa1299690:three_prime_UTR
CTGTGAGCAGAAAGATGATA+TGG 0.473510 8_3:-61016994 Msa1299690:CDS
AGTTGATGAAGAAGAGAAAA+GGG 0.474749 8_3:+61020300 None:intergenic
GGCGACAATCATGAGAAGAA+AGG 0.484157 8_3:-61018291 Msa1299690:CDS
ATCTAAATTCTAACAGAGGA+TGG 0.486341 8_3:+61015489 None:intergenic
AAAGGCCTCCTGTTGATGTC+AGG 0.487205 8_3:-61018263 Msa1299690:intron
AGCAGAAGTATAATGAGATT+AGG 0.487313 8_3:-61019958 Msa1299690:CDS
CACAGTCACAAAACCAACTA+AGG 0.487948 8_3:+61017012 None:intergenic
GCAGCTTGCAGAATTAATCA+AGG 0.516175 8_3:-61016797 Msa1299690:intron
GTATAATGAGATTAGGAAGC+CGG 0.518765 8_3:-61019951 Msa1299690:CDS
TGTTGTTCCTTCTTCACGGA+AGG 0.521205 8_3:+61019028 None:intergenic
GAGCTACACAAGCCAGTTAG+TGG 0.523204 8_3:-61015803 Msa1299690:three_prime_UTR
ACACAGAGGCGAAGCGAAGA+TGG 0.525363 8_3:-61020258 Msa1299690:exon
TCTAAATTCTAACAGAGGAT+GGG 0.525688 8_3:+61015490 None:intergenic
GCGACAATCATGAGAAGAAA+GGG 0.529007 8_3:-61018290 Msa1299690:CDS
TAATGATGAAGCGAGTGATA+AGG 0.530659 8_3:-61019993 Msa1299690:CDS
TGAAGCTGATGATGAGGTAA+TGG 0.532222 8_3:-61016585 Msa1299690:CDS
GAAAACGCGAAAGGGTGTTA+GGG 0.538787 8_3:+61020329 None:intergenic
GATCCAAGATGACCTCGAAA+AGG 0.540267 8_3:-61020147 Msa1299690:intron
TATCACTAAAATTGCACGAT+GGG 0.540851 8_3:+61015727 None:intergenic
CTCATTCAGTAGTTCACTGA+GGG 0.542426 8_3:+61019738 None:intergenic
TTCCGACTATAGTTAACTTG+CGG 0.542706 8_3:+61015578 None:intergenic
TGACGAAGAGGGTGATGATG+AGG 0.543527 8_3:-61015950 Msa1299690:CDS
CTCTTCTTCATCAACTTCCG+CGG 0.546448 8_3:-61020293 Msa1299690:five_prime_UTR
AGAGGCGAAGCGAAGATGGT+TGG 0.555118 8_3:-61020254 Msa1299690:exon
CTCATCATCAGCTTCATCAT+CGG 0.555556 8_3:+61016592 None:intergenic
CAAGTATTTGAGTTCTCTTG+AGG 0.559002 8_3:-61019319 Msa1299690:CDS
GATCTCTTGCAATTTCTCGA+TGG 0.566477 8_3:+61020166 None:intergenic
TCCCGCAAGTTAACTATAGT+CGG 0.568159 8_3:-61015580 Msa1299690:three_prime_UTR
GTAGTTCACTGAGGGTAGGA+TGG 0.569898 8_3:+61019746 None:intergenic
CCTCAGTGAACTACTGAATG+AGG 0.570986 8_3:-61019737 Msa1299690:CDS
ACAGGAGGAGCCTGATGAAG+AGG 0.571562 8_3:-61016618 Msa1299690:intron
CTAAATTCTAACAGAGGATG+GGG 0.571769 8_3:+61015491 None:intergenic
GGTGGAATGAAAACGCGAAA+GGG 0.576072 8_3:+61020321 None:intergenic
TAGATGTTGATATTCGCCAT+CGG 0.578538 8_3:-61015471 Msa1299690:three_prime_UTR
CATAAAATGGAAAGAAGGCA+AGG 0.587844 8_3:-61018988 Msa1299690:intron
CAAGTTAACTATAGTCGGAA+AGG 0.588633 8_3:-61015575 Msa1299690:three_prime_UTR
TTTATGCTAAGATACCCAAA+CGG 0.589342 8_3:+61015633 None:intergenic
ATGCCCTGAAAGAAAGGCCA+TGG 0.592269 8_3:+61015845 None:intergenic
TGATGAAGAAGAGAAAAGGG+TGG 0.594767 8_3:+61020303 None:intergenic
CTAGATGAAATTACTTGACA+GGG 0.597629 8_3:+61015755 None:intergenic
CTTGCAATTTCTCGATGGAG+AGG 0.599246 8_3:+61020171 None:intergenic
CATTAACTCATGTCAGCGAG+TGG 0.602193 8_3:-61015825 Msa1299690:three_prime_UTR
AGACGAGGACGACTCTGAAG+AGG 0.603159 8_3:-61015974 Msa1299690:CDS
GGGTGGAATGAAAACGCGAA+AGG 0.604662 8_3:+61020320 None:intergenic
GGAAGCCGGTTTACGATAAG+CGG 0.605546 8_3:-61019937 Msa1299690:CDS
GGTAATTGATAAATTATGGT+CGG 0.611413 8_3:+61015776 None:intergenic
CTCTGAAGAGGATGACGAAG+AGG 0.619244 8_3:-61015962 Msa1299690:CDS
TCTGAAGAGGATGACGAAGA+GGG 0.630726 8_3:-61015961 Msa1299690:CDS
TTCAGTAGTTCACTGAGGGT+AGG 0.637147 8_3:+61019742 None:intergenic
GAAGAGGGTGATGATGAGGA+AGG 0.646490 8_3:-61015946 Msa1299690:CDS
CAACATCTAAATTCTAACAG+AGG 0.650545 8_3:+61015485 None:intergenic
GACTATAGTTAACTTGCGGG+AGG 0.653498 8_3:+61015582 None:intergenic
TACATGTAGGGAATACCCAA+TGG 0.673035 8_3:-61018312 Msa1299690:intron
CGATGATGAAGCTGATGATG+AGG 0.673202 8_3:-61016591 Msa1299690:CDS
ACACTGTTGAAATAAATGAG+TGG 0.676235 8_3:+61016757 None:intergenic
CCTCATTCAGTAGTTCACTG+AGG 0.684849 8_3:+61019737 None:intergenic
ACCAACCTGACATCAACAGG+AGG 0.699036 8_3:+61018258 None:intergenic
GTATCACTAAAATTGCACGA+TGG 0.702616 8_3:+61015726 None:intergenic
GGCAATCTTCACTCACACAG+AGG 0.721891 8_3:-61020272 Msa1299690:five_prime_UTR
TATGGCTGACATTCACGACG+AGG 0.776284 8_3:-61016976 Msa1299690:intron
TGTGTGAGTGAAGATTGCCG+CGG 0.840253 8_3:+61020276 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATATATGATAGTTTA+AGG - chr8_3:61017277-61017296 Msa1299690:intron 10.0%
!! TTAAATATATGATAGTTTAA+GGG - chr8_3:61017278-61017297 Msa1299690:intron 10.0%
!! AAATGTTAATATAAAGAATA+TGG - chr8_3:61019493-61019512 Msa1299690:intron 10.0%
!!! ATTGTGTTTTAATAATTATG+TGG - chr8_3:61015747-61015766 Msa1299690:three_prime_UTR 15.0%
!! ATATCTATCAAATAAAGAAT+TGG + chr8_3:61016450-61016469 None:intergenic 15.0%
!! AAAAATTATAAATGCTGATA+GGG + chr8_3:61016854-61016873 None:intergenic 15.0%
!! TAAAAATTATAAATGCTGAT+AGG + chr8_3:61016855-61016874 None:intergenic 15.0%
!! TCAACAACAAAAAATATATA+AGG + chr8_3:61017354-61017373 None:intergenic 15.0%
!!! CATTTTGTATAAACATATAA+AGG + chr8_3:61017657-61017676 None:intergenic 15.0%
!!! AAATGTTTTTTTACATGAAA+GGG + chr8_3:61018526-61018545 None:intergenic 15.0%
!!! AAAATGTTTTTTTACATGAA+AGG + chr8_3:61018527-61018546 None:intergenic 15.0%
!!! TTCACATTATTTATTGTTTT+CGG + chr8_3:61019598-61019617 None:intergenic 15.0%
!! TGTTTGTCATTAATTTAAAA+TGG + chr8_3:61019747-61019766 None:intergenic 15.0%
!! TGCATGATTATAATTTATAT+TGG - chr8_3:61020276-61020295 Msa1299690:five_prime_UTR 15.0%
!! GCTTCAATTGAATAAAAAAA+CGG + chr8_3:61015671-61015690 None:intergenic 20.0%
!! AACACAATTCAAATCAAATT+AGG + chr8_3:61015735-61015754 None:intergenic 20.0%
!!! TGAAGTGATTTTCAAATTTT+CGG + chr8_3:61016571-61016590 None:intergenic 20.0%
!! AAAATTATAAATGCTGATAG+GGG + chr8_3:61016853-61016872 None:intergenic 20.0%
!!! ATAAATCATAAGTTTCAAGT+AGG - chr8_3:61017022-61017041 Msa1299690:intron 20.0%
!!! TAAATCATAAGTTTCAAGTA+GGG - chr8_3:61017023-61017042 Msa1299690:intron 20.0%
!! TGATTAGAAATACAATCATT+AGG - chr8_3:61017207-61017226 Msa1299690:intron 20.0%
!!! AATCCTTTTAAAGTAGATTT+AGG + chr8_3:61017929-61017948 None:intergenic 20.0%
!! ATTTGCAAATGAAAATACTT+TGG + chr8_3:61018149-61018168 None:intergenic 20.0%
!! TTTGAGAAATATGTTGTTAA+AGG - chr8_3:61018677-61018696 Msa1299690:intron 20.0%
!! AGTGAATTGAATATTATACA+AGG + chr8_3:61018968-61018987 None:intergenic 20.0%
!! AATTAATCAAGGATGATTTA+TGG - chr8_3:61019004-61019023 Msa1299690:CDS 20.0%
!! AAAATGACAAATAATGCATT+TGG + chr8_3:61019099-61019118 None:intergenic 20.0%
!!! TCTATTTTTTCCAAGAAAAA+CGG + chr8_3:61019236-61019255 None:intergenic 20.0%
!! TATTGCTCATAATAATTGTT+TGG - chr8_3:61019280-61019299 Msa1299690:CDS 20.0%
!! TGAAAATTATGAATTCAGTA+TGG + chr8_3:61019325-61019344 None:intergenic 20.0%
!! TTAATCCTAAACATTGTTAA+AGG - chr8_3:61019688-61019707 Msa1299690:intron 20.0%
!! CTCAAACCAAAAAAATAAAA+AGG + chr8_3:61019898-61019917 None:intergenic 20.0%
! ATTATTTGATCCACCAAATT+AGG - chr8_3:61015705-61015724 Msa1299690:three_prime_UTR 25.0%
! CAAATTAGGTTAACCTAATT+TGG + chr8_3:61015719-61015738 None:intergenic 25.0%
!!! TTCTGTGGAAGTATTTTTTA+AGG - chr8_3:61016190-61016209 Msa1299690:intron 25.0%
! CATGAAAGAACATAATAAGT+GGG + chr8_3:61016350-61016369 None:intergenic 25.0%
! ACATGAAAGAACATAATAAG+TGG + chr8_3:61016351-61016370 None:intergenic 25.0%
!! ATTTTCAAATTTTCGGAAGA+GGG + chr8_3:61016564-61016583 None:intergenic 25.0%
! CTTCATTGCAATGAAAAATA+TGG - chr8_3:61016586-61016605 Msa1299690:CDS 25.0%
!!! AGTTTTGAATCCTCAAAATA+GGG + chr8_3:61016728-61016747 None:intergenic 25.0%
!!! AAGTTTTGAATCCTCAAAAT+AGG + chr8_3:61016729-61016748 None:intergenic 25.0%
!!! TTAAACTTGCTAAAAGTAGA+GGG - chr8_3:61016937-61016956 Msa1299690:intron 25.0%
! AATCTGTAAATCTCACAATT+TGG + chr8_3:61017314-61017333 None:intergenic 25.0%
! TTGTGAGATTTACAGATTAA+TGG - chr8_3:61017316-61017335 Msa1299690:intron 25.0%
! GTTAGTAAAATACAACAACA+AGG + chr8_3:61017446-61017465 None:intergenic 25.0%
! GTTTATACAAAATGAACTTC+TGG - chr8_3:61017663-61017682 Msa1299690:intron 25.0%
! TTTATTGATGTCCTAATTGA+CGG + chr8_3:61017745-61017764 None:intergenic 25.0%
! TCAATTAGGACATCAATAAA+GGG - chr8_3:61017745-61017764 Msa1299690:intron 25.0%
! AAAAAAGGAAAAGAGGAATT+TGG + chr8_3:61017805-61017824 None:intergenic 25.0%
! ACTGAAAAGAAGAAGAAAAA+AGG + chr8_3:61017820-61017839 None:intergenic 25.0%
! ATGCCTAAATCTACTTTAAA+AGG - chr8_3:61017923-61017942 Msa1299690:intron 25.0%
! ACTTTGGTATTGTTAAATAG+CGG + chr8_3:61018133-61018152 None:intergenic 25.0%
! TTCATTTGCAAATAATTGAC+TGG - chr8_3:61018156-61018175 Msa1299690:intron 25.0%
! ACAATTGATCAAATTTCTCT+TGG + chr8_3:61018264-61018283 None:intergenic 25.0%
! TGATCAATTGTATACTTGAT+TGG - chr8_3:61018273-61018292 Msa1299690:CDS 25.0%
!!! TTTTTTACATGAAAGGGTTT+TGG + chr8_3:61018520-61018539 None:intergenic 25.0%
!! GTTTTTCTTGGAAAAAATAG+AGG - chr8_3:61019235-61019254 Msa1299690:intron 25.0%
!! AGGTGATTAACAAAAGTTTT+TGG - chr8_3:61019255-61019274 Msa1299690:intron 25.0%
!! GGTGATTAACAAAAGTTTTT+GGG - chr8_3:61019256-61019275 Msa1299690:intron 25.0%
! TTCAATTAAAGAGTTTGATG+CGG - chr8_3:61019341-61019360 Msa1299690:intron 25.0%
! AAGAATATGGAACTATAAGT+TGG - chr8_3:61019506-61019525 Msa1299690:intron 25.0%
! TCATTCTAACTTAAAGCTTT+AGG + chr8_3:61019565-61019584 None:intergenic 25.0%
! TAGATCCTTTAACAATGTTT+AGG + chr8_3:61019696-61019715 None:intergenic 25.0%
! AAATAATATTTCTTGTTCGC+AGG - chr8_3:61019789-61019808 Msa1299690:intron 25.0%
!!! GTGTGACCTTTTTATTTTTT+TGG - chr8_3:61019889-61019908 Msa1299690:intron 25.0%
!!! TTTTGGTTTGAGTATGTATT+AGG - chr8_3:61019906-61019925 Msa1299690:CDS 25.0%
! GGTAATTGATAAATTATGGT+CGG + chr8_3:61020017-61020036 None:intergenic 25.0%
! ACAGGGTAATTGATAAATTA+TGG + chr8_3:61020021-61020040 None:intergenic 25.0%
!!! GTATATTAGCTTTCTCTTTT+GGG - chr8_3:61020092-61020111 Msa1299690:intron 25.0%
!! AGTTGATGAAGAAGAGAAAA+GGG + chr8_3:61015493-61015512 None:intergenic 30.0%
!! AAGTTGATGAAGAAGAGAAA+AGG + chr8_3:61015494-61015513 None:intergenic 30.0%
ATTAGGTTAACCTAATTTGG+TGG + chr8_3:61015718-61015737 None:intergenic 30.0%
! AGCAGAAGTATAATGAGATT+AGG - chr8_3:61015832-61015851 Msa1299690:three_prime_UTR 30.0%
TCAAATCTATTCCTGATTTC+TGG - chr8_3:61015886-61015905 Msa1299690:three_prime_UTR 30.0%
!! TTGGTTTGTTTGTATGATTC+TGG - chr8_3:61016152-61016171 Msa1299690:intron 30.0%
! GTATGATTCTGGAAATTACT+CGG - chr8_3:61016163-61016182 Msa1299690:intron 30.0%
! AAAACGAAACAGAATGGTTT+TGG - chr8_3:61016237-61016256 Msa1299690:intron 30.0%
TACTTTGATTCCATGGAAAA+TGG + chr8_3:61016268-61016287 None:intergenic 30.0%
GTGATATTACTTTGATTCCA+TGG + chr8_3:61016275-61016294 None:intergenic 30.0%
!!! GGTTTTGTTCCTTTGATTAA+CGG - chr8_3:61016398-61016417 Msa1299690:intron 30.0%
TCTTGAGGTTGAAGATAATA+AGG - chr8_3:61016486-61016505 Msa1299690:intron 30.0%
GATAATAAGGATGTCAAATC+TGG - chr8_3:61016499-61016518 Msa1299690:intron 30.0%
! TTTTCAAATTTTCGGAAGAG+GGG + chr8_3:61016563-61016582 None:intergenic 30.0%
! GATTTTCAAATTTTCGGAAG+AGG + chr8_3:61016565-61016584 None:intergenic 30.0%
GTCAGTAGAAAATCAACATT+TGG + chr8_3:61016659-61016678 None:intergenic 30.0%
TCTGAACATGAAATGATTAC+TGG + chr8_3:61016691-61016710 None:intergenic 30.0%
! TTGCCTTCTTTCCATTTTAT+GGG + chr8_3:61016803-61016822 None:intergenic 30.0%
GATTTGAAGAAGTTTCACAT+TGG + chr8_3:61016899-61016918 None:intergenic 30.0%
TTCTTCAAATCTACATGACA+TGG - chr8_3:61016908-61016927 Msa1299690:intron 30.0%
!! CTTAAACTTGCTAAAAGTAG+AGG - chr8_3:61016936-61016955 Msa1299690:intron 30.0%
TGAGTGATACTTTACTATTG+CGG + chr8_3:61017075-61017094 None:intergenic 30.0%
AAAGTTACCCCACAATTAAA+AGG - chr8_3:61017106-61017125 Msa1299690:intron 30.0%
!! ATTACAGGCCTTTTAATTGT+GGG + chr8_3:61017117-61017136 None:intergenic 30.0%
ACAGATTCATACAACATTAC+AGG + chr8_3:61017132-61017151 None:intergenic 30.0%
TTGTATGAATCTGTTCACTT+GGG - chr8_3:61017138-61017157 Msa1299690:intron 30.0%
CTGTCGAAAAAAAAAGAAGA+AGG + chr8_3:61017414-61017433 None:intergenic 30.0%
!!! TCTTCTTTTTTTTTCGACAG+AGG - chr8_3:61017414-61017433 Msa1299690:intron 30.0%
ACATAATCCTGATACATGTA+GGG - chr8_3:61017466-61017485 Msa1299690:intron 30.0%
ACTAATATGCATCATGAACA+TGG + chr8_3:61017614-61017633 None:intergenic 30.0%
! TATTAGTTTCCACTTGTTCT+TGG - chr8_3:61017627-61017646 Msa1299690:intron 30.0%
GTCAATTAGGACATCAATAA+AGG - chr8_3:61017744-61017763 Msa1299690:intron 30.0%
AAACAAGCATCACTAATCAA+GGG + chr8_3:61017771-61017790 None:intergenic 30.0%
AAAACAAGCATCACTAATCA+AGG + chr8_3:61017772-61017791 None:intergenic 30.0%
! TTGATTAGTGATGCTTGTTT+TGG - chr8_3:61017771-61017790 Msa1299690:intron 30.0%
GAAGAAGAAAAAAGGAAAAG+AGG + chr8_3:61017812-61017831 None:intergenic 30.0%
TTTATTCCAATATGACCAAG+CGG - chr8_3:61017844-61017863 Msa1299690:intron 30.0%
CATAACACAATACAATACAG+AGG - chr8_3:61017900-61017919 Msa1299690:intron 30.0%
TATCTCCGTCAATTATTTGA+CGG - chr8_3:61018200-61018219 Msa1299690:intron 30.0%
TCAATTGTATACTTGATTGG+AGG - chr8_3:61018276-61018295 Msa1299690:CDS 30.0%
!!! TGGTACCAATTTTTTCCAAT+AGG - chr8_3:61018334-61018353 Msa1299690:intron 30.0%
!! CAAATATGAAGGTGGTTTTA+AGG + chr8_3:61018615-61018634 None:intergenic 30.0%
TAAAACCACCTTCATATTTG+AGG - chr8_3:61018615-61018634 Msa1299690:intron 30.0%
TCATTAGCACAAGAAATCAA+AGG + chr8_3:61018749-61018768 None:intergenic 30.0%
ACACTGTTGAAATAAATGAG+TGG + chr8_3:61019036-61019055 None:intergenic 30.0%
AGCTACAGTTAGAAACATAA+CGG + chr8_3:61019140-61019159 None:intergenic 30.0%
GTAGCTGATTGTAATATAAC+AGG - chr8_3:61019154-61019173 Msa1299690:intron 30.0%
AAAAAGTTATGCATTCAGCA+TGG + chr8_3:61019387-61019406 None:intergenic 30.0%
TGAAAATTAAAGTTCGGTTC+AGG + chr8_3:61019448-61019467 None:intergenic 30.0%
CGCGAATGAAAATTAAAGTT+CGG + chr8_3:61019454-61019473 None:intergenic 30.0%
! TTAATTTTCATTCGCGATCT+AGG - chr8_3:61019458-61019477 Msa1299690:intron 30.0%
TGATAACCTCCAAAAAAACT+TGG - chr8_3:61019641-61019660 Msa1299690:intron 30.0%
!!! GATAACTTGCCAAGTTTTTT+TGG + chr8_3:61019653-61019672 None:intergenic 30.0%
ATTAATGACAAACACAGCTT+TGG - chr8_3:61019753-61019772 Msa1299690:CDS 30.0%
AGGCAATTGAAAATGCATTA+TGG - chr8_3:61019864-61019883 Msa1299690:intron 30.0%
! TTGAGTATGTATTAGGCTTT+TGG - chr8_3:61019913-61019932 Msa1299690:CDS 30.0%
! TGAGTATGTATTAGGCTTTT+GGG - chr8_3:61019914-61019933 Msa1299690:CDS 30.0%
CTAGATGAAATTACTTGACA+GGG + chr8_3:61020038-61020057 None:intergenic 30.0%
ACTAGATGAAATTACTTGAC+AGG + chr8_3:61020039-61020058 None:intergenic 30.0%
TATCACTAAAATTGCACGAT+GGG + chr8_3:61020066-61020085 None:intergenic 30.0%
!! TGCAATTTTAGTGATACTCA+TGG - chr8_3:61020070-61020089 Msa1299690:intron 30.0%
!!! GGTATATTAGCTTTCTCTTT+TGG - chr8_3:61020091-61020110 Msa1299690:intron 30.0%
TTTATGCTAAGATACCCAAA+CGG + chr8_3:61020160-61020179 None:intergenic 30.0%
TTGGGTATCTTAGCATAAAA+AGG - chr8_3:61020161-61020180 Msa1299690:CDS 30.0%
TCTAAATTCTAACAGAGGAT+GGG + chr8_3:61020303-61020322 None:intergenic 30.0%
ATCTAAATTCTAACAGAGGA+TGG + chr8_3:61020304-61020323 None:intergenic 30.0%
CAACATCTAAATTCTAACAG+AGG + chr8_3:61020308-61020327 None:intergenic 30.0%
! ATCAACTTCTTCGGGATTTT+CGG + chr8_3:61015588-61015607 None:intergenic 35.0%
! AAAAAAACGGTACCTTTTCG+AGG + chr8_3:61015658-61015677 None:intergenic 35.0%
TAATGATGAAGCGAGTGATA+AGG - chr8_3:61015797-61015816 Msa1299690:three_prime_UTR 35.0%
GTATAATGAGATTAGGAAGC+CGG - chr8_3:61015839-61015858 Msa1299690:three_prime_UTR 35.0%
! GTTTTCCATGTTGTTACGTT+TGG - chr8_3:61016133-61016152 Msa1299690:intron 35.0%
ACAAACCAAACGTAACAACA+TGG + chr8_3:61016141-61016160 None:intergenic 35.0%
!! TTTGGTTTCACCATTTTCCA+TGG - chr8_3:61016255-61016274 Msa1299690:intron 35.0%
AAACCTAGCAATTGTTCAGA+AGG + chr8_3:61016383-61016402 None:intergenic 35.0%
CTTTGATTAACGGTTCTGTT+GGG - chr8_3:61016408-61016427 Msa1299690:intron 35.0%
! CAAGTATTTGAGTTCTCTTG+AGG - chr8_3:61016471-61016490 Msa1299690:intron 35.0%
! TTTCAAATTTTCGGAAGAGG+GGG + chr8_3:61016562-61016581 None:intergenic 35.0%
GAATCCTCAAAATAGGGATT+GGG + chr8_3:61016722-61016741 None:intergenic 35.0%
TGAATCCTCAAAATAGGGAT+TGG + chr8_3:61016723-61016742 None:intergenic 35.0%
! TGCCTTCTTTCCATTTTATG+GGG + chr8_3:61016802-61016821 None:intergenic 35.0%
! CTTGCCTTCTTTCCATTTTA+TGG + chr8_3:61016804-61016823 None:intergenic 35.0%
CATAAAATGGAAAGAAGGCA+AGG - chr8_3:61016802-61016821 Msa1299690:intron 35.0%
! AAAGTATCACTCAAGTTTGC+AGG - chr8_3:61017082-61017101 Msa1299690:intron 35.0%
!! TTACAGGCCTTTTAATTGTG+GGG + chr8_3:61017116-61017135 None:intergenic 35.0%
!! CATTACAGGCCTTTTAATTG+TGG + chr8_3:61017118-61017137 None:intergenic 35.0%
GTTGTATGAATCTGTTCACT+TGG - chr8_3:61017137-61017156 Msa1299690:intron 35.0%
TGTATGAATCTGTTCACTTG+GGG - chr8_3:61017139-61017158 Msa1299690:intron 35.0%
AAGACCTCTACAAGAACAAA+TGG - chr8_3:61017240-61017259 Msa1299690:intron 35.0%
AGACCTCTACAAGAACAAAT+GGG - chr8_3:61017241-61017260 Msa1299690:intron 35.0%
GATAGTTTAAGGGAAACTGT+TGG - chr8_3:61017288-61017307 Msa1299690:intron 35.0%
TTGTTGAGTGATCCATATAG+TGG - chr8_3:61017367-61017386 Msa1299690:intron 35.0%
CACATAATCCTGATACATGT+AGG - chr8_3:61017465-61017484 Msa1299690:intron 35.0%
ATGAGAAGAAAGGGAACAAA+AGG - chr8_3:61017509-61017528 Msa1299690:intron 35.0%
! TTTGTTATCATGGACAAAGC+TGG + chr8_3:61017703-61017722 None:intergenic 35.0%
!! AACTCGTGAGTTTGTTATCA+TGG + chr8_3:61017713-61017732 None:intergenic 35.0%
TTATAATCCTGCCGTCAATT+AGG - chr8_3:61017731-61017750 Msa1299690:intron 35.0%
! ATCCCACAGTTTGATGATTA+CGG - chr8_3:61017955-61017974 Msa1299690:intron 35.0%
ATCCGTAATCATCAAACTGT+GGG + chr8_3:61017960-61017979 None:intergenic 35.0%
TATCCGTAATCATCAAACTG+TGG + chr8_3:61017961-61017980 None:intergenic 35.0%
! TAGTAATGGGAAAGTTGTTC+AGG + chr8_3:61018009-61018028 None:intergenic 35.0%
TCCATAGCAACGATAGTAAT+GGG + chr8_3:61018022-61018041 None:intergenic 35.0%
TTCCATAGCAACGATAGTAA+TGG + chr8_3:61018023-61018042 None:intergenic 35.0%
GCGAAAGAATCATATTGTAG+CGG - chr8_3:61018067-61018086 Msa1299690:intron 35.0%
TGACGGAGATAATTCTTCAA+AGG + chr8_3:61018191-61018210 None:intergenic 35.0%
TGTATACTTGATTGGAGGTT+TGG - chr8_3:61018281-61018300 Msa1299690:CDS 35.0%
GTATACTTGATTGGAGGTTT+GGG - chr8_3:61018282-61018301 Msa1299690:CDS 35.0%
AGGGACCTATTGGAAAAAAT+TGG + chr8_3:61018342-61018361 None:intergenic 35.0%
!! GTGAAAAGTATTGACCTTTC+AGG - chr8_3:61018446-61018465 Msa1299690:intron 35.0%
! TAAAGGCTTAAAGCTCCTTT+TGG - chr8_3:61018694-61018713 Msa1299690:intron 35.0%
! TTCAATGAAGCGTTTCCAAA+AGG + chr8_3:61018712-61018731 None:intergenic 35.0%
GAAACGCTTCATTGAACAAA+TGG - chr8_3:61018716-61018735 Msa1299690:intron 35.0%
ATGAATGCAGTTTCCTTAGT+TGG - chr8_3:61018765-61018784 Msa1299690:intron 35.0%
AGAAACTACTTGAGAAGAAC+AGG + chr8_3:61018853-61018872 None:intergenic 35.0%
GCTGATTGTAATATAACAGG+AGG - chr8_3:61019157-61019176 Msa1299690:intron 35.0%
!! AATGGAAGTTCCGTTTTTCT+TGG - chr8_3:61019223-61019242 Msa1299690:intron 35.0%
!!! AACTTGCCAAGTTTTTTTGG+AGG + chr8_3:61019650-61019669 None:intergenic 35.0%
GTATCACTAAAATTGCACGA+TGG + chr8_3:61020067-61020086 None:intergenic 35.0%
! TTCCGACTATAGTTAACTTG+CGG + chr8_3:61020215-61020234 None:intergenic 35.0%
CAAGTTAACTATAGTCGGAA+AGG - chr8_3:61020215-61020234 Msa1299690:CDS 35.0%
! AGCTTTATGCATAACTTTCC+TGG - chr8_3:61020238-61020257 Msa1299690:CDS 35.0%
CTAAATTCTAACAGAGGATG+GGG + chr8_3:61020302-61020321 None:intergenic 35.0%
TAGATGTTGATATTCGCCAT+CGG - chr8_3:61020319-61020338 Msa1299690:five_prime_UTR 35.0%
TGATGAAGAAGAGAAAAGGG+TGG + chr8_3:61015490-61015509 None:intergenic 40.0%
AGTTCAGCATCAACTTCTTC+GGG + chr8_3:61015596-61015615 None:intergenic 40.0%
GAGTTCAGCATCAACTTCTT+CGG + chr8_3:61015597-61015616 None:intergenic 40.0%
GATCTCTTGCAATTTCTCGA+TGG + chr8_3:61015627-61015646 None:intergenic 40.0%
ACAGCATTCAACCAGAAATC+AGG + chr8_3:61015900-61015919 None:intergenic 40.0%
CTCATTCAGTAGTTCACTGA+GGG + chr8_3:61016055-61016074 None:intergenic 40.0%
GTGGACAAAACGAAACAGAA+TGG - chr8_3:61016231-61016250 Msa1299690:intron 40.0%
CCAACAGAACCGTTAATCAA+AGG + chr8_3:61016410-61016429 None:intergenic 40.0%
CCTTTGATTAACGGTTCTGT+TGG - chr8_3:61016407-61016426 Msa1299690:intron 40.0%
AGAAGAAGGGCAACTTACAA+GGG + chr8_3:61016536-61016555 None:intergenic 40.0%
! CAATCCCAATCCCTATTTTG+AGG - chr8_3:61016715-61016734 Msa1299690:intron 40.0%
! ACTTTTACCTTCCGTGAAGA+AGG - chr8_3:61016755-61016774 Msa1299690:intron 40.0%
TCTCTGTTGTTCCTTCTTCA+CGG + chr8_3:61016769-61016788 None:intergenic 40.0%
ACCCCCATAAAATGGAAAGA+AGG - chr8_3:61016797-61016816 Msa1299690:intron 40.0%
! GCCTTCTTTCCATTTTATGG+GGG + chr8_3:61016801-61016820 None:intergenic 40.0%
AATGGAAAGAAGGCAAGGTA+AGG - chr8_3:61016807-61016826 Msa1299690:intron 40.0%
ATGGAAAGAAGGCAAGGTAA+GGG - chr8_3:61016808-61016827 Msa1299690:intron 40.0%
TCGAACTTGATGAGATGCAT+AGG - chr8_3:61016974-61016993 Msa1299690:intron 40.0%
CGAACTTGATGAGATGCATA+GGG - chr8_3:61016975-61016994 Msa1299690:intron 40.0%
GAGATGCATAGGGAAAATAG+TGG - chr8_3:61016985-61017004 Msa1299690:CDS 40.0%
GTATGAATCTGTTCACTTGG+GGG - chr8_3:61017140-61017159 Msa1299690:intron 40.0%
GACCTCTACAAGAACAAATG+GGG - chr8_3:61017242-61017261 Msa1299690:intron 40.0%
TCTACAAGAACAAATGGGGA+GGG - chr8_3:61017246-61017265 Msa1299690:intron 40.0%
! AGGTCTTTTACCATGAGCTT+GGG + chr8_3:61017394-61017413 None:intergenic 40.0%
! AAGGTCTTTTACCATGAGCT+TGG + chr8_3:61017395-61017414 None:intergenic 40.0%
TACATGTAGGGAATACCCAA+TGG - chr8_3:61017478-61017497 Msa1299690:intron 40.0%
TTCTCATGATTGTCGCCATT+GGG + chr8_3:61017496-61017515 None:intergenic 40.0%
GCGACAATCATGAGAAGAAA+GGG - chr8_3:61017500-61017519 Msa1299690:intron 40.0%
ATATTTCCTTACCTTCCGCT+TGG + chr8_3:61017862-61017881 None:intergenic 40.0%
AGCGGAAGGTAAGGAAATAT+TGG - chr8_3:61017862-61017881 Msa1299690:intron 40.0%
GCGGAAGGTAAGGAAATATT+GGG - chr8_3:61017863-61017882 Msa1299690:intron 40.0%
!! GAAAGTTGTTCAGGTTGTTG+AGG + chr8_3:61018000-61018019 None:intergenic 40.0%
TCCCATTACTATCGTTGCTA+TGG - chr8_3:61018018-61018037 Msa1299690:intron 40.0%
TTTCGCTATCAGTGCAATAG+CGG + chr8_3:61018053-61018072 None:intergenic 40.0%
TCCGTCAATTATTTGACGGA+TGG - chr8_3:61018204-61018223 Msa1299690:intron 40.0%
GCCATCCGTCAAATAATTGA+CGG + chr8_3:61018208-61018227 None:intergenic 40.0%
TGAATCCACCCGTCAAATAT+GGG + chr8_3:61018231-61018250 None:intergenic 40.0%
TTGAATCCACCCGTCAAATA+TGG + chr8_3:61018232-61018251 None:intergenic 40.0%
! TATTTGACGGGTGGATTCAA+TGG - chr8_3:61018232-61018251 Msa1299690:intron 40.0%
!! ATGGTGGATGTTTAAGAGTC+TGG - chr8_3:61018314-61018333 Msa1299690:intron 40.0%
! GCAAAGCACACAAGTTTTAC+TGG + chr8_3:61018366-61018385 None:intergenic 40.0%
GAGACTGCTCTTGACAATAT+GGG + chr8_3:61018399-61018418 None:intergenic 40.0%
AGAGACTGCTCTTGACAATA+TGG + chr8_3:61018400-61018419 None:intergenic 40.0%
!! TGGAAGAGTATCTTTATGCC+TGG - chr8_3:61018475-61018494 Msa1299690:intron 40.0%
AGCAAGACAGAGAGTAAAGT+AGG - chr8_3:61018568-61018587 Msa1299690:intron 40.0%
TCTGTCCTCAAATATGAAGG+TGG + chr8_3:61018623-61018642 None:intergenic 40.0%
GCTTCTGTCCTCAAATATGA+AGG + chr8_3:61018626-61018645 None:intergenic 40.0%
CACAGTCACAAAACCAACTA+AGG + chr8_3:61018781-61018800 None:intergenic 40.0%
CTGTGAGCAGAAAGATGATA+TGG - chr8_3:61018796-61018815 Msa1299690:intron 40.0%
ACACGTGGAAAACAAAGACA+GGG + chr8_3:61018888-61018907 None:intergenic 40.0%
ATTAGTCAAGTAGAGACACG+TGG + chr8_3:61018903-61018922 None:intergenic 40.0%
GCAGCTTGCAGAATTAATCA+AGG - chr8_3:61018993-61019012 Msa1299690:CDS 40.0%
CTCATCATCAGCTTCATCAT+CGG + chr8_3:61019201-61019220 None:intergenic 40.0%
! TGAAGCTGATGATGAGGTAA+TGG - chr8_3:61019205-61019224 Msa1299690:intron 40.0%
GAGTTAATGCCCTGAAAGAA+AGG + chr8_3:61019954-61019973 None:intergenic 40.0%
TACTGCATTTACTAGCCGTT+TGG - chr8_3:61020142-61020161 Msa1299690:intron 40.0%
ACTGCATTTACTAGCCGTTT+GGG - chr8_3:61020143-61020162 Msa1299690:intron 40.0%
TCCCGCAAGTTAACTATAGT+CGG - chr8_3:61020210-61020229 Msa1299690:CDS 40.0%
!! TCCGACTATAGTTAACTTGC+GGG + chr8_3:61020214-61020233 None:intergenic 40.0%
GCATTTATGTTTCAGTTGCC+AGG + chr8_3:61020259-61020278 None:intergenic 40.0%
AGATGTTGATATTCGCCATC+GGG - chr8_3:61020320-61020339 Msa1299690:five_prime_UTR 40.0%
!! GAAAACGCGAAAGGGTGTTA+GGG + chr8_3:61015464-61015483 None:intergenic 45.0%
!! TGAAAACGCGAAAGGGTGTT+AGG + chr8_3:61015465-61015484 None:intergenic 45.0%
GGTGGAATGAAAACGCGAAA+GGG + chr8_3:61015472-61015491 None:intergenic 45.0%
CTCTTCTTCATCAACTTCCG+CGG - chr8_3:61015497-61015516 Msa1299690:three_prime_UTR 45.0%
TTCGGTGAGTTTCTGCTTCT+TGG + chr8_3:61015570-61015589 None:intergenic 45.0%
CTTGCAATTTCTCGATGGAG+AGG + chr8_3:61015622-61015641 None:intergenic 45.0%
GATCCAAGATGACCTCGAAA+AGG - chr8_3:61015643-61015662 Msa1299690:three_prime_UTR 45.0%
!! GTACCTTTTCGAGGTCATCT+TGG + chr8_3:61015649-61015668 None:intergenic 45.0%
TCGTTCCGCTTATCGTAAAC+CGG + chr8_3:61015861-61015880 None:intergenic 45.0%
TTCAGTAGTTCACTGAGGGT+AGG + chr8_3:61016051-61016070 None:intergenic 45.0%
CCTCATTCAGTAGTTCACTG+AGG + chr8_3:61016056-61016075 None:intergenic 45.0%
CCTCAGTGAACTACTGAATG+AGG - chr8_3:61016053-61016072 Msa1299690:intron 45.0%
AAATTACTCGGCGTGTTCTG+TGG - chr8_3:61016175-61016194 Msa1299690:intron 45.0%
! TGTTTCGTTTTGTCCACGCT+GGG + chr8_3:61016228-61016247 None:intergenic 45.0%
CTAGCAATTGTTCAGAAGGC+AGG + chr8_3:61016379-61016398 None:intergenic 45.0%
CTGCCTTCTGAACAATTGCT+AGG - chr8_3:61016377-61016396 Msa1299690:intron 45.0%
GAGAAGAAGGGCAACTTACA+AGG + chr8_3:61016537-61016556 None:intergenic 45.0%
TGTTGTTCCTTCTTCACGGA+AGG + chr8_3:61016765-61016784 None:intergenic 45.0%
TCACTGCTACCCCCATAAAA+TGG - chr8_3:61016789-61016808 Msa1299690:CDS 45.0%
CTCCCCATTTGTTCTTGTAG+AGG + chr8_3:61017247-61017266 None:intergenic 45.0%
CTCTACAAGAACAAATGGGG+AGG - chr8_3:61017245-61017264 Msa1299690:intron 45.0%
ATGAGCTTGGGTCCACTATA+TGG + chr8_3:61017382-61017401 None:intergenic 45.0%
!! ATATAGTGGACCCAAGCTCA+TGG - chr8_3:61017381-61017400 Msa1299690:intron 45.0%
GGGTATTCCCTACATGTATC+AGG + chr8_3:61017476-61017495 None:intergenic 45.0%
CTTCTCATGATTGTCGCCAT+TGG + chr8_3:61017497-61017516 None:intergenic 45.0%
GGCGACAATCATGAGAAGAA+AGG - chr8_3:61017499-61017518 Msa1299690:intron 45.0%
AAAGGTCAGCCAAGAACAAG+TGG + chr8_3:61017639-61017658 None:intergenic 45.0%
TTGATGTCCTAATTGACGGC+AGG + chr8_3:61017741-61017760 None:intergenic 45.0%
TTCCAATATGACCAAGCGGA+AGG - chr8_3:61017848-61017867 Msa1299690:intron 45.0%
TACCTTCCGCTTGGTCATAT+TGG + chr8_3:61017853-61017872 None:intergenic 45.0%
ATATGACCAAGCGGAAGGTA+AGG - chr8_3:61017853-61017872 Msa1299690:intron 45.0%
!! TTGTTCAGGTTGTTGAGGTC+GGG + chr8_3:61017995-61018014 None:intergenic 45.0%
!! GTTGTTCAGGTTGTTGAGGT+CGG + chr8_3:61017996-61018015 None:intergenic 45.0%
! ATAGCGGAGCTATTGTGTAG+CGG + chr8_3:61018117-61018136 None:intergenic 45.0%
GAATCCACCCGTCAAATATG+GGG + chr8_3:61018230-61018249 None:intergenic 45.0%
! TTGATTGGAGGTTTGGGATC+AGG - chr8_3:61018288-61018307 Msa1299690:CDS 45.0%
! TGATTGGAGGTTTGGGATCA+GGG - chr8_3:61018289-61018308 Msa1299690:CDS 45.0%
! TTTTACTGGCAGGGACCTAT+TGG + chr8_3:61018352-61018371 None:intergenic 45.0%
! GCACACAAGTTTTACTGGCA+GGG + chr8_3:61018361-61018380 None:intergenic 45.0%
! AGCACACAAGTTTTACTGGC+AGG + chr8_3:61018362-61018381 None:intergenic 45.0%
ATTGACCTTTCAGGAGTCGA+TGG - chr8_3:61018455-61018474 Msa1299690:intron 45.0%
! AGAGTATCTTTATGCCTGGC+TGG - chr8_3:61018479-61018498 Msa1299690:intron 45.0%
GACACGTGGAAAACAAAGAC+AGG + chr8_3:61018889-61018908 None:intergenic 45.0%
! CGATGATGAAGCTGATGATG+AGG - chr8_3:61019199-61019218 Msa1299690:intron 45.0%
CTTCTAGCAGCGATTTCTGA+AGG - chr8_3:61019421-61019440 Msa1299690:intron 45.0%
TTGTTCGCAGGAAAAAGACG+AGG - chr8_3:61019801-61019820 Msa1299690:intron 45.0%
TCTGAAGAGGATGACGAAGA+GGG - chr8_3:61019829-61019848 Msa1299690:intron 45.0%
AGACCATGGCCTTTCTTTCA+GGG - chr8_3:61019942-61019961 Msa1299690:CDS 45.0%
CATTAACTCATGTCAGCGAG+TGG - chr8_3:61019965-61019984 Msa1299690:CDS 45.0%
!! GACTATAGTTAACTTGCGGG+AGG + chr8_3:61020211-61020230 None:intergenic 45.0%
GGGTGGAATGAAAACGCGAA+AGG + chr8_3:61015473-61015492 None:intergenic 50.0%
TGTGTGAGTGAAGATTGCCG+CGG + chr8_3:61015517-61015536 None:intergenic 50.0%
GGCAATCTTCACTCACACAG+AGG - chr8_3:61015518-61015537 Msa1299690:three_prime_UTR 50.0%
! GGAAGCCGGTTTACGATAAG+CGG - chr8_3:61015853-61015872 Msa1299690:three_prime_UTR 50.0%
GTAGTTCACTGAGGGTAGGA+TGG + chr8_3:61016047-61016066 None:intergenic 50.0%
!!! GTAGTAGTTTTGACCCAGCG+TGG - chr8_3:61016212-61016231 Msa1299690:intron 50.0%
! CTGTTTCGTTTTGTCCACGC+TGG + chr8_3:61016229-61016248 None:intergenic 50.0%
GAAGAGGGGGAAGAGAAGAA+GGG + chr8_3:61016549-61016568 None:intergenic 50.0%
CAAGAACAAATGGGGAGGGT+TGG - chr8_3:61017250-61017269 Msa1299690:intron 50.0%
AAAGGCCTCCTGTTGATGTC+AGG - chr8_3:61017527-61017546 Msa1299690:intron 50.0%
ACCAACCTGACATCAACAGG+AGG + chr8_3:61017535-61017554 None:intergenic 50.0%
GACACCAACCTGACATCAAC+AGG + chr8_3:61017538-61017557 None:intergenic 50.0%
CATGGACAAAGCTGGAGAGT+GGG + chr8_3:61017695-61017714 None:intergenic 50.0%
TCATGGACAAAGCTGGAGAG+TGG + chr8_3:61017696-61017715 None:intergenic 50.0%
TAGCGGAGCTATTGTGTAGC+GGG + chr8_3:61018116-61018135 None:intergenic 50.0%
ACGGATGGCCCCATATTTGA+CGG - chr8_3:61018219-61018238 Msa1299690:intron 50.0%
! GATTGGAGGTTTGGGATCAG+GGG - chr8_3:61018290-61018309 Msa1299690:CDS 50.0%
!! CTCTTCCATCGACTCCTGAA+AGG + chr8_3:61018463-61018482 None:intergenic 50.0%
TATGGCTGACATTCACGACG+AGG - chr8_3:61018814-61018833 Msa1299690:intron 50.0%
TCATCGGCATCCTCTTCATC+AGG + chr8_3:61019185-61019204 None:intergenic 50.0%
TGCGGTGATACTGTGCATAC+TGG - chr8_3:61019359-61019378 Msa1299690:intron 50.0%
! CTCTGAAGAGGATGACGAAG+AGG - chr8_3:61019828-61019847 Msa1299690:intron 50.0%
! TGACGAAGAGGGTGATGATG+AGG - chr8_3:61019840-61019859 Msa1299690:intron 50.0%
! GAAGAGGGTGATGATGAGGA+AGG - chr8_3:61019844-61019863 Msa1299690:intron 50.0%
CAGACCATGGCCTTTCTTTC+AGG - chr8_3:61019941-61019960 Msa1299690:CDS 50.0%
ATGCCCTGAAAGAAAGGCCA+TGG + chr8_3:61019948-61019967 None:intergenic 50.0%
GAGCTACACAAGCCAGTTAG+TGG - chr8_3:61019987-61020006 Msa1299690:CDS 50.0%
ATGGTCGGAGAACCACTAAC+TGG + chr8_3:61020002-61020021 None:intergenic 50.0%
ACACAGAGGCGAAGCGAAGA+TGG - chr8_3:61015532-61015551 Msa1299690:three_prime_UTR 55.0%
AGAGGCGAAGCGAAGATGGT+TGG - chr8_3:61015536-61015555 Msa1299690:three_prime_UTR 55.0%
GGAAGAGGGGGAAGAGAAGA+AGG + chr8_3:61016550-61016569 None:intergenic 55.0%
ACTTGGGGGTTGCACAAGAC+AGG - chr8_3:61017154-61017173 Msa1299690:intron 55.0%
CTTGGGGGTTGCACAAGACA+GGG - chr8_3:61017155-61017174 Msa1299690:intron 55.0%
GCCTCCTGTTGATGTCAGGT+TGG - chr8_3:61017531-61017550 Msa1299690:intron 55.0%
GTTGAGGTCGGGAACGAACA+GGG + chr8_3:61017984-61018003 None:intergenic 55.0%
TGTTGAGGTCGGGAACGAAC+AGG + chr8_3:61017985-61018004 None:intergenic 55.0%
CGGATGGCCCCATATTTGAC+GGG - chr8_3:61018220-61018239 Msa1299690:intron 55.0%
ATGGCCCCATATTTGACGGG+TGG - chr8_3:61018223-61018242 Msa1299690:intron 55.0%
! GAGGTTTGGGATCAGGGGTA+TGG - chr8_3:61018295-61018314 Msa1299690:CDS 55.0%
! GTTTGGGATCAGGGGTATGG+TGG - chr8_3:61018298-61018317 Msa1299690:CDS 55.0%
AGAGTAATGCACAGCCAGCC+AGG + chr8_3:61018496-61018515 None:intergenic 55.0%
ACAGGAGGAGCCTGATGAAG+AGG - chr8_3:61019172-61019191 Msa1299690:intron 55.0%
! AGACGAGGACGACTCTGAAG+AGG - chr8_3:61019816-61019835 Msa1299690:intron 55.0%
! GCTTTTGGGCGTGCAGACCA+TGG - chr8_3:61019928-61019947 Msa1299690:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 61015456 61020356 61015456 ID=Msa1299690;Name=Msa1299690
chr8_3 mRNA 61015456 61020356 61015456 ID=Msa1299690-mRNA-1;Parent=Msa1299690;Name=Msa1299690-mRNA-1;_AED=0.03;_eAED=0.03;_QI=95|1|1|1|1|1|10|483|265
chr8_3 exon 61015456 61016001 61015456 ID=Msa1299690-mRNA-1:exon:17967;Parent=Msa1299690-mRNA-1
chr8_3 exon 61016556 61016636 61016556 ID=Msa1299690-mRNA-1:exon:17966;Parent=Msa1299690-mRNA-1
chr8_3 exon 61016759 61016815 61016759 ID=Msa1299690-mRNA-1:exon:17965;Parent=Msa1299690-mRNA-1
chr8_3 exon 61016977 61017037 61016977 ID=Msa1299690-mRNA-1:exon:17964;Parent=Msa1299690-mRNA-1
chr8_3 exon 61018264 61018325 61018264 ID=Msa1299690-mRNA-1:exon:17963;Parent=Msa1299690-mRNA-1
chr8_3 exon 61018989 61019102 61018989 ID=Msa1299690-mRNA-1:exon:17962;Parent=Msa1299690-mRNA-1
chr8_3 exon 61019275 61019346 61019275 ID=Msa1299690-mRNA-1:exon:17961;Parent=Msa1299690-mRNA-1
chr8_3 exon 61019726 61019776 61019726 ID=Msa1299690-mRNA-1:exon:17960;Parent=Msa1299690-mRNA-1
chr8_3 exon 61019895 61020017 61019895 ID=Msa1299690-mRNA-1:exon:17959;Parent=Msa1299690-mRNA-1
chr8_3 exon 61020148 61020356 61020148 ID=Msa1299690-mRNA-1:exon:17958;Parent=Msa1299690-mRNA-1
chr8_3 five_prime_UTR 61020262 61020356 61020262 ID=Msa1299690-mRNA-1:five_prime_utr;Parent=Msa1299690-mRNA-1
chr8_3 CDS 61020148 61020261 61020148 ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1
chr8_3 CDS 61019895 61020017 61019895 ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1
chr8_3 CDS 61019726 61019776 61019726 ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1
chr8_3 CDS 61019275 61019346 61019275 ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1
chr8_3 CDS 61018989 61019102 61018989 ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1
chr8_3 CDS 61018264 61018325 61018264 ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1
chr8_3 CDS 61016977 61017037 61016977 ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1
chr8_3 CDS 61016759 61016815 61016759 ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1
chr8_3 CDS 61016556 61016636 61016556 ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1
chr8_3 CDS 61015939 61016001 61015939 ID=Msa1299690-mRNA-1:cds;Parent=Msa1299690-mRNA-1
chr8_3 three_prime_UTR 61015456 61015938 61015456 ID=Msa1299690-mRNA-1:three_prime_utr;Parent=Msa1299690-mRNA-1
Gene Sequence

>Msa1299690

ATGGTTGGAGACAGAACCAAGAAGCAGAAACTCACCGAAAATCCCGAAGAAGTTGATGCTGAACTCATCCTCTCCATCGAGAAATTGCAAGAGATCCAAGATGACCTCGAAAAGATTAATGATGAAGCGAGTGATAAGGTTCTCGAAATTGAGCAGAAGTATAATGAGATTAGGAAGCCGGTTTACGATAAGCGGAACGAGATTATCAAATCTATTCCTGATTTCTGGTTGAATGCTTTTTTGAGCCATCCTACCCTCAGTGAACTACTGAATGAGGAAGATCAAAAAATATTCAAGTATTTGAGTTCTCTTGAGGTTGAAGATAATAAGGATGTCAAATCTGGATACACAATCACCCTTAATTTCAATCCCAATCCCTATTTTGAGGATTCAAAACTTTCAAAGACTTTTACCTTCCGTGAAGAAGGAACAACAGAGATCACTGCTACCCCCATAAAATGGAAAGAAGGCAAGGGAATACCCAATGGCGACAATCATGAGAAGAAAGGGAACAAAAGGCCTCCTGTTGATGTCAGTTTCCTTAGTTGGTTTTGTGACTGTGAGCAGAAAGATGATATGGCTGACATTCACGACGAGCTTGCAGAATTAATCAAGGATGATTTATGGTCAAATCCACTCATTTATTTCAACAGTGAGGAGCCTGATGAAGAGGATGCCGATGATGAAGCTGATGATGAGGTAATGGAAGTTCCGTTTTTCTTGGAAAAAATAGAGGAAAAAGACGAGGACGACTCTGAAGAGGATGACGAAGAGGGTGATGATGAGGAAGGCAATTGA

Protein sequence

>Msa1299690

MVGDRTKKQKLTENPEEVDAELILSIEKLQEIQDDLEKINDEASDKVLEIEQKYNEIRKPVYDKRNEIIKSIPDFWLNAFLSHPTLSELLNEEDQKIFKYLSSLEVEDNKDVKSGYTITLNFNPNPYFEDSKLSKTFTFREEGTTEITATPIKWKEGKGIPNGDNHEKKGNKRPPVDVSFLSWFCDCEQKDDMADIHDELAELIKDDLWSNPLIYFNSEEPDEEDADDEADDEVMEVPFFLEKIEEKDEDDSEEDDEEGDDEEGN*