AlfalfaGEDB | Msa1433590

M. sativa cultivar zhongmu-4 / Msa1433590

KEGG: K11290
GO: GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0016444 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360
PFAM: PF00956.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433590	XP_013457898.1	99.248	266	1	1	1	265	1	266	0.0	520

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433590	sp\|Q8LC68\|NRP2_ARATH	73.182	220	57	2	1	218	1	220	7.45e-113	328

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433590	A0A072UQ45	99.248	266	1	1	1	265	1	266	0.0	520

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002430	Msa1433590	0.854285	1.363159e-61	-8.615850e-47
Msa0018050	Msa1433590	0.860382	2.147652e-63	-8.615850e-47
Msa0052370	Msa1433590	0.821424	4.067421e-53	-8.615850e-47
Msa0071760	Msa1433590	0.844579	6.926618e-59	-8.615850e-47
Msa0082430	Msa1433590	0.801186	1.014134e-48	-8.615850e-47
Msa0097380	Msa1433590	0.854829	9.485451e-62	-8.615850e-47
Msa0128990	Msa1433590	0.808162	3.546784e-50	-8.615850e-47
Msa0136400	Msa1433590	0.835791	1.366222e-56	-8.615850e-47
Msa0164770	Msa1433590	0.803667	3.125214e-49	-8.615850e-47
Msa0177220	Msa1433590	0.814787	1.289689e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433590	MtrunA17_Chr4g0060621	99.248	266	1	1	1	265	1	266	0.0	520
Msa1433590	MtrunA17_Chr3g0092521	78.281	221	45	1	1	218	1	221	9.42e-127	360
Msa1433590	MtrunA17_Chr4g0064221	62.868	272	81	5	5	265	105	367	7.19e-107	314
Msa1433590	MtrunA17_Chr6g0487861	48.810	84	42	1	57	139	2	85	4.63e-25	95.1
Msa1433590	MtrunA17_Chr6g0487691	48.810	84	42	1	57	139	2	85	4.63e-25	95.1
Msa1433590	MtrunA17_Chr6g0487501	39.496	119	59	2	100	206	38	155	3.06e-20	84.7
Msa1433590	MtrunA17_Chr2g0299501	27.957	186	103	4	5	160	30	214	1.01e-12	67.4
Msa1433590	MtrunA17_Chr2g0330141	27.568	185	102	4	7	160	30	213	3.50e-11	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433590	AT1G18800.1	72.851	221	57	3	1	218	1	221	5.40e-112	323
Msa1433590	AT1G74560.1	73.171	205	53	2	17	219	22	226	4.57e-108	313
Msa1433590	AT1G74560.3	73.333	195	50	2	17	209	22	216	3.01e-102	298
Msa1433590	AT2G19480.2	26.380	163	91	3	26	160	55	216	9.78e-11	62.0
Msa1433590	AT2G19480.1	26.380	163	91	3	26	160	55	216	9.93e-11	62.0

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Find 98 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCCTCCTGTTGATGTC+AGG	0.487205	tig0027382:-6281	Msa1433590:intron
AAGTTGATGAAGAAGAGAAA+AGG	0.450896	tig0027382:+8317	None:intergenic
AATTAATCAAGGATGATTTA+TGG	0.308424	tig0027382:-4804	Msa1433590:CDS
ACACAGAGGCGAACCGAAGA+TGG	0.523143	tig0027382:-8276	Msa1433590:exon
ACACTGTTGAAATAAATGAG+TGG	0.676235	tig0027382:+4775	None:intergenic
ACAGCATTCAACCAGAAATC+AGG	0.453818	tig0027382:+7911	None:intergenic
ACAGGAGGAGCCTGATGAAG+AGG	0.571562	tig0027382:-4636	Msa1433590:intron
ACAGGGTAATTGATAAATTA+TGG	0.281625	tig0027382:+3790	None:intergenic
ACCAACCTGACATCAACAGG+AGG	0.699036	tig0027382:+6276	None:intergenic
ACTAGAAGAAATTACTTGAC+AGG	0.444435	tig0027382:+3772	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTAGGTTAACCTAATTTGG+TGG	+	tig0027382:3737-3756	None:intergenic	30.0%
TCAAATCTATTCCTGATTTC+TGG	-	tig0027382:3905-3924	Msa1433590:three_prime_UTR	30.0%
TACTTTGATTCCATGGAAAA+TGG	+	tig0027382:4287-4306	None:intergenic	30.0%
GTGATATTACTTTGATTCCA+TGG	+	tig0027382:4294-4313	None:intergenic	30.0%
TCTTGAGGTTGAAGATAATA+AGG	-	tig0027382:4505-4524	Msa1433590:intron	30.0%
GATAATAAGGATGTCAAATC+TGG	-	tig0027382:4518-4537	Msa1433590:intron	30.0%
GTCAGTAGAAAATCAACATT+TGG	+	tig0027382:4678-4697	None:intergenic	30.0%
TCTGAACATGAAATGATTAC+TGG	+	tig0027382:4710-4729	None:intergenic	30.0%
TGAGTGATACTTTACTATTG+CGG	+	tig0027382:5094-5113	None:intergenic	30.0%
AAAGTTACCCCACAATTAAA+AGG	-	tig0027382:5125-5144	Msa1433590:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0027382	gene	3475	8374	3475	ID=Msa1433590;Name=Msa1433590
tig0027382	mRNA	3475	8374	3475	ID=Msa1433590-mRNA-1;Parent=Msa1433590;Name=Msa1433590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=95\|1\|1\|1\|1\|1\|10\|482\|265
tig0027382	exon	3475	4019	3475	ID=Msa1433590-mRNA-1:exon:8733;Parent=Msa1433590-mRNA-1
tig0027382	exon	4574	4654	4574	ID=Msa1433590-mRNA-1:exon:8732;Parent=Msa1433590-mRNA-1
tig0027382	exon	4777	4833	4777	ID=Msa1433590-mRNA-1:exon:8731;Parent=Msa1433590-mRNA-1
tig0027382	exon	4995	5055	4995	ID=Msa1433590-mRNA-1:exon:8730;Parent=Msa1433590-mRNA-1
tig0027382	exon	6282	6343	6282	ID=Msa1433590-mRNA-1:exon:8729;Parent=Msa1433590-mRNA-1
tig0027382	exon	7007	7120	7007	ID=Msa1433590-mRNA-1:exon:8728;Parent=Msa1433590-mRNA-1
tig0027382	exon	7293	7364	7293	ID=Msa1433590-mRNA-1:exon:8727;Parent=Msa1433590-mRNA-1
tig0027382	exon	7744	7794	7744	ID=Msa1433590-mRNA-1:exon:8726;Parent=Msa1433590-mRNA-1
tig0027382	exon	7913	8035	7913	ID=Msa1433590-mRNA-1:exon:8725;Parent=Msa1433590-mRNA-1
tig0027382	exon	8166	8374	8166	ID=Msa1433590-mRNA-1:exon:8724;Parent=Msa1433590-mRNA-1
tig0027382	five_prime_UTR	8280	8374	8280	ID=Msa1433590-mRNA-1:five_prime_utr;Parent=Msa1433590-mRNA-1
tig0027382	CDS	8166	8279	8166	ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382	CDS	7913	8035	7913	ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382	CDS	7744	7794	7744	ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382	CDS	7293	7364	7293	ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382	CDS	7007	7120	7007	ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382	CDS	6282	6343	6282	ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382	CDS	4995	5055	4995	ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382	CDS	4777	4833	4777	ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382	CDS	4574	4654	4574	ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382	CDS	3957	4019	3957	ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382	three_prime_UTR	3475	3956	3475	ID=Msa1433590-mRNA-1:three_prime_utr;Parent=Msa1433590-mRNA-1

Gene Sequence

>Msa1433590

ATGGTTGGAGACAGAACCAAGAAGCAGAAACTCACCGAAAATCCCGAAGAAGTTGATGCTGAACTCATCCTCTCCATCGAGAAATTGCAAGAGATCCAAGATGACCTCGAAAAGATTAATGATGAAGCGAGTGATAAGGTTCTCGAAATTGAGCAGAAGTATAATGAGATTAGGAAGCCGGTTTACGATAAGCGGAACGAGATTATCAAATCTATTCCTGATTTCTGGTTGAATGCTTTTTTGAGCCATCCTACCCTCAGTGAACTACTGAATGAGGAAGATCAAAAAATATTCAAGTATTTGAGTTCTCTTGAGGTTGAAGATAATAAGGATGTCAAATCTGGATACACAATCACCCTTAATTTCAATCCCAATCCCTATTTTGAGGATTCAAAACTTTCAAAGACTTTTACCTTCCGTGAAGAAGGAACAACAGAGATCACTGCTACCCCCATAAAATGGAAAGAAGGCAAGGGAATACCCAATGGCGACAATCATGAGAAGAAAGGGAACAAAAGGCCTCCTGTTGATGTCAGTTTCCTTAGTTGGTTTTGTGACTGTGAGCAGAAAGATGATATGGCTGACATTCACGACGAGCTTGCAGAATTAATCAAGGATGATTTATGGTCAAATCCACTCATTTATTTCAACAGTGAGGAGCCTGATGAAGAGGATGCCGATGATGAAGCTGATGATGAGGTAATGGAAGTTCCGTTTTTCTTGGAAAAAATAGAGGAAAAAGACGAGGACGACTCTGAAGAGGATGACGAAGAGGGTGATGATGAGGAAGGCAATTGA

Protein sequence

>Msa1433590

MVGDRTKKQKLTENPEEVDAELILSIEKLQEIQDDLEKINDEASDKVLEIEQKYNEIRKPVYDKRNEIIKSIPDFWLNAFLSHPTLSELLNEEDQKIFKYLSSLEVEDNKDVKSGYTITLNFNPNPYFEDSKLSKTFTFREEGTTEITATPIKWKEGKGIPNGDNHEKKGNKRPPVDVSFLSWFCDCEQKDDMADIHDELAELIKDDLWSNPLIYFNSEEPDEEDADDEADDEVMEVPFFLEKIEEKDEDDSEEDDEEGDDEEGN*