Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1433590 | XP_013457898.1 | 99.248 | 266 | 1 | 1 | 1 | 265 | 1 | 266 | 0.0 | 520 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1433590 | sp|Q8LC68|NRP2_ARATH | 73.182 | 220 | 57 | 2 | 1 | 218 | 1 | 220 | 7.45e-113 | 328 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1433590 | A0A072UQ45 | 99.248 | 266 | 1 | 1 | 1 | 265 | 1 | 266 | 0.0 | 520 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002430 | Msa1433590 | 0.854285 | 1.363159e-61 | -8.615850e-47 |
Msa0018050 | Msa1433590 | 0.860382 | 2.147652e-63 | -8.615850e-47 |
Msa0052370 | Msa1433590 | 0.821424 | 4.067421e-53 | -8.615850e-47 |
Msa0071760 | Msa1433590 | 0.844579 | 6.926618e-59 | -8.615850e-47 |
Msa0082430 | Msa1433590 | 0.801186 | 1.014134e-48 | -8.615850e-47 |
Msa0097380 | Msa1433590 | 0.854829 | 9.485451e-62 | -8.615850e-47 |
Msa1364810 | Msa1433590 | 0.843565 | 1.295595e-58 | -8.615850e-47 |
Msa1418980 | Msa1433590 | 0.856038 | 4.214627e-62 | -8.615850e-47 |
Msa1433590 | Msa1444240 | 0.821393 | 4.136087e-53 | -8.615850e-47 |
Msa0611560 | Msa1433590 | 0.814594 | 1.422863e-51 | -8.615850e-47 |
Msa0648620 | Msa1433590 | 0.814992 | 1.161350e-51 | -8.615850e-47 |
Msa0648670 | Msa1433590 | 0.808314 | 3.290837e-50 | -8.615850e-47 |
Msa0659050 | Msa1433590 | 0.847057 | 1.471469e-59 | -8.615850e-47 |
Msa0686660 | Msa1433590 | 0.806415 | 8.317518e-50 | -8.615850e-47 |
Msa0704980 | Msa1433590 | 0.801550 | 8.542401e-49 | -8.615850e-47 |
Msa0728870 | Msa1433590 | 0.848154 | 7.344766e-60 | -8.615850e-47 |
Msa0128990 | Msa1433590 | 0.808162 | 3.546784e-50 | -8.615850e-47 |
Msa0136400 | Msa1433590 | 0.835791 | 1.366222e-56 | -8.615850e-47 |
Msa0164770 | Msa1433590 | 0.803667 | 3.125214e-49 | -8.615850e-47 |
Msa0177220 | Msa1433590 | 0.814787 | 1.289689e-51 | -8.615850e-47 |
Msa0188440 | Msa1433590 | 0.813845 | 2.082861e-51 | -8.615850e-47 |
Msa0208190 | Msa1433590 | 0.851780 | 7.103017e-61 | -8.615850e-47 |
Msa0208290 | Msa1433590 | 0.815861 | 7.442446e-52 | -8.615850e-47 |
Msa0208320 | Msa1433590 | 0.848718 | 5.127353e-60 | -8.615850e-47 |
Msa0223090 | Msa1433590 | 0.819533 | 1.104719e-52 | -8.615850e-47 |
Msa0223370 | Msa1433590 | 0.823367 | 1.438980e-53 | -8.615850e-47 |
Msa0223950 | Msa1433590 | 0.807185 | 5.719730e-50 | -8.615850e-47 |
Msa1257450 | Msa1433590 | 0.854918 | 8.933922e-62 | -8.615850e-47 |
Msa1260780 | Msa1433590 | 0.805965 | 1.034483e-49 | -8.615850e-47 |
Msa1299690 | Msa1433590 | 0.957002 | 7.730678e-115 | -8.615850e-47 |
Msa1305260 | Msa1433590 | 0.867917 | 9.608339e-66 | -8.615850e-47 |
Msa1331510 | Msa1433590 | 0.852059 | 5.915739e-61 | -8.615850e-47 |
Msa1332230 | Msa1433590 | 0.966276 | 1.051906e-125 | -8.615850e-47 |
Msa1341130 | Msa1433590 | 0.811499 | 6.789776e-51 | -8.615850e-47 |
Msa1341780 | Msa1433590 | 0.836422 | 9.447262e-57 | -8.615850e-47 |
Msa1344160 | Msa1433590 | 0.830796 | 2.400378e-55 | -8.615850e-47 |
Msa1344190 | Msa1433590 | 0.815784 | 7.740433e-52 | -8.615850e-47 |
Msa0418980 | Msa1433590 | 0.825202 | 5.329806e-54 | -8.615850e-47 |
Msa0479980 | Msa1433590 | 0.800249 | 1.574831e-48 | -8.615850e-47 |
Msa1022730 | Msa1433590 | 0.824175 | 9.307512e-54 | -8.615850e-47 |
Msa1037080 | Msa1433590 | 0.803681 | 3.104227e-49 | -8.615850e-47 |
Msa1070810 | Msa1433590 | 0.834364 | 3.128602e-56 | -8.615850e-47 |
Msa1106870 | Msa1433590 | 0.850247 | 1.921301e-60 | -8.615850e-47 |
Msa0262400 | Msa1433590 | 0.842782 | 2.095431e-58 | -8.615850e-47 |
Msa0265200 | Msa1433590 | 0.805056 | 1.604496e-49 | -8.615850e-47 |
Msa0339880 | Msa1433590 | 0.827950 | 1.178407e-54 | -8.615850e-47 |
Msa1115190 | Msa1433590 | 0.822195 | 2.697491e-53 | -8.615850e-47 |
Msa1118790 | Msa1433590 | 0.808564 | 2.911384e-50 | -8.615850e-47 |
Msa1136880 | Msa1433590 | 0.851290 | 9.774717e-61 | -8.615850e-47 |
Msa1158630 | Msa1433590 | 0.840063 | 1.089607e-57 | -8.615850e-47 |
Msa1207200 | Msa1433590 | 0.853986 | 1.662153e-61 | -8.615850e-47 |
Msa1211820 | Msa1433590 | 0.983449 | 8.952507e-158 | -8.615850e-47 |
Msa1218110 | Msa1433590 | 0.823859 | 1.104101e-53 | -8.615850e-47 |
Msa0550490 | Msa1433590 | 0.844932 | 5.565113e-59 | -8.615850e-47 |
Msa0554210 | Msa1433590 | 0.860628 | 1.808949e-63 | -8.615850e-47 |
Msa0587830 | Msa1433590 | 0.836384 | 9.658704e-57 | -8.615850e-47 |
Msa0587850 | Msa1433590 | 0.847147 | 1.389629e-59 | -8.615850e-47 |
Msa0865790 | Msa1433590 | 0.806569 | 7.719368e-50 | -8.615850e-47 |
Msa0966110 | Msa1433590 | 0.813122 | 3.002640e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1433590 | MtrunA17_Chr4g0060621 | 99.248 | 266 | 1 | 1 | 1 | 265 | 1 | 266 | 0.0 | 520 |
Msa1433590 | MtrunA17_Chr3g0092521 | 78.281 | 221 | 45 | 1 | 1 | 218 | 1 | 221 | 9.42e-127 | 360 |
Msa1433590 | MtrunA17_Chr4g0064221 | 62.868 | 272 | 81 | 5 | 5 | 265 | 105 | 367 | 7.19e-107 | 314 |
Msa1433590 | MtrunA17_Chr6g0487861 | 48.810 | 84 | 42 | 1 | 57 | 139 | 2 | 85 | 4.63e-25 | 95.1 |
Msa1433590 | MtrunA17_Chr6g0487691 | 48.810 | 84 | 42 | 1 | 57 | 139 | 2 | 85 | 4.63e-25 | 95.1 |
Msa1433590 | MtrunA17_Chr6g0487501 | 39.496 | 119 | 59 | 2 | 100 | 206 | 38 | 155 | 3.06e-20 | 84.7 |
Msa1433590 | MtrunA17_Chr2g0299501 | 27.957 | 186 | 103 | 4 | 5 | 160 | 30 | 214 | 1.01e-12 | 67.4 |
Msa1433590 | MtrunA17_Chr2g0330141 | 27.568 | 185 | 102 | 4 | 7 | 160 | 30 | 213 | 3.50e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1433590 | AT1G18800.1 | 72.851 | 221 | 57 | 3 | 1 | 218 | 1 | 221 | 5.40e-112 | 323 |
Msa1433590 | AT1G74560.1 | 73.171 | 205 | 53 | 2 | 17 | 219 | 22 | 226 | 4.57e-108 | 313 |
Msa1433590 | AT1G74560.3 | 73.333 | 195 | 50 | 2 | 17 | 209 | 22 | 216 | 3.01e-102 | 298 |
Msa1433590 | AT2G19480.2 | 26.380 | 163 | 91 | 3 | 26 | 160 | 55 | 216 | 9.78e-11 | 62.0 |
Msa1433590 | AT2G19480.1 | 26.380 | 163 | 91 | 3 | 26 | 160 | 55 | 216 | 9.93e-11 | 62.0 |
Find 98 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGACCATGGCCTTTCTTTC+AGG | 0.071837 | tig0027382:-3867 | Msa1433590:three_prime_UTR |
GATCTTTATGCATAACTTTC+TGG | 0.102315 | tig0027382:-3571 | Msa1433590:three_prime_UTR |
TCAAATCTATTCCTGATTTC+TGG | 0.142000 | tig0027382:-7922 | Msa1433590:CDS |
GGTATATTAGCTTTCTCTTT+TGG | 0.151187 | tig0027382:-3717 | Msa1433590:three_prime_UTR |
TTCGGTGAGTTTCTGCTTCT+TGG | 0.176469 | tig0027382:+8241 | None:intergenic |
TTGAGTATGTATTAGGCTTT+TGG | 0.206492 | tig0027382:-3895 | Msa1433590:three_prime_UTR |
TTGGGTATCTTAGCATAAAA+AGG | 0.247822 | tig0027382:-3647 | Msa1433590:three_prime_UTR |
ACAGGGTAATTGATAAATTA+TGG | 0.281625 | tig0027382:+3790 | None:intergenic |
TGCATGATTATAATTTATAT+TGG | 0.287040 | tig0027382:-3533 | Msa1433590:three_prime_UTR |
AATTAATCAAGGATGATTTA+TGG | 0.308424 | tig0027382:-4804 | Msa1433590:CDS |
TCTTGAGGTTGAAGATAATA+AGG | 0.335371 | tig0027382:-7322 | Msa1433590:CDS |
TGAAAACGCGAAAGGGTGTT+AGG | 0.338957 | tig0027382:+8346 | None:intergenic |
GATAATAAGGATGTCAAATC+TGG | 0.344818 | tig0027382:-7309 | Msa1433590:CDS |
TACTGCATTTACTAGCCGTT+TGG | 0.353047 | tig0027382:-3666 | Msa1433590:three_prime_UTR |
AGTTCAGCATCAACTTCTTC+GGG | 0.365326 | tig0027382:+8215 | None:intergenic |
CTTCTCATGATTGTCGCCAT+TGG | 0.369583 | tig0027382:+6314 | None:intergenic |
GAGTTCAGCATCAACTTCTT+CGG | 0.373422 | tig0027382:+8214 | None:intergenic |
ATGAATGCAGTTTCCTTAGT+TGG | 0.378489 | tig0027382:-5043 | Msa1433590:intron |
TTCTCATGATTGTCGCCATT+GGG | 0.394389 | tig0027382:+6315 | None:intergenic |
AGGCAATTGAAAATGCATTA+TGG | 0.398971 | tig0027382:-3944 | Msa1433590:exon |
TCCGACTATAGTTAACTTGC+GGG | 0.399219 | tig0027382:+3597 | None:intergenic |
ACTGCATTTACTAGCCGTTT+GGG | 0.400007 | tig0027382:-3665 | Msa1433590:three_prime_UTR |
TGAATCCTCAAAATAGGGAT+TGG | 0.404769 | tig0027382:+7088 | None:intergenic |
AGACCATGGCCTTTCTTTCA+GGG | 0.412109 | tig0027382:-3866 | Msa1433590:three_prime_UTR |
GAATCCTCAAAATAGGGATT+GGG | 0.412238 | tig0027382:+7089 | None:intergenic |
GTTCTGTCTCCAACCATCTT+CGG | 0.412928 | tig0027382:+8263 | None:intergenic |
GACACCAACCTGACATCAAC+AGG | 0.420723 | tig0027382:+6273 | None:intergenic |
TCTCTGTTGTTCCTTCTTCA+CGG | 0.428176 | tig0027382:+7042 | None:intergenic |
ACTAGAAGAAATTACTTGAC+AGG | 0.444435 | tig0027382:+3772 | None:intergenic |
AAGTTGATGAAGAAGAGAAA+AGG | 0.450896 | tig0027382:+8317 | None:intergenic |
AGATATTGATATTTGCCATC+GGG | 0.452656 | tig0027382:-3489 | Msa1433590:three_prime_UTR |
ACAGCATTCAACCAGAAATC+AGG | 0.453818 | tig0027382:+7911 | None:intergenic |
TCATCGGCATCCTCTTCATC+AGG | 0.453926 | tig0027382:+4626 | None:intergenic |
ATGGTCGGAGAACCACTAAC+TGG | 0.454059 | tig0027382:+3809 | None:intergenic |
TCGTTCCGCTTATCGTAAAC+CGG | 0.454701 | tig0027382:+7950 | None:intergenic |
GAGTTAATGCCCTGAAAGAA+AGG | 0.464958 | tig0027382:+3857 | None:intergenic |
ATGAGAAGAAAGGGAACAAA+AGG | 0.469606 | tig0027382:-6299 | Msa1433590:CDS |
CTGTGAGCAGAAAGATGATA+TGG | 0.473510 | tig0027382:-5012 | Msa1433590:CDS |
AGTTGATGAAGAAGAGAAAA+GGG | 0.474749 | tig0027382:+8318 | None:intergenic |
ATCTAAATTCTAACAGAGGA+TGG | 0.479524 | tig0027382:+3508 | None:intergenic |
GGCGACAATCATGAGAAGAA+AGG | 0.484157 | tig0027382:-6309 | Msa1433590:CDS |
AAAGGCCTCCTGTTGATGTC+AGG | 0.487205 | tig0027382:-6281 | Msa1433590:intron |
AGCAGAAGTATAATGAGATT+AGG | 0.487313 | tig0027382:-7976 | Msa1433590:CDS |
CACAGTCACAAAACCAACTA+AGG | 0.487948 | tig0027382:+5030 | None:intergenic |
GCAGCTTGCAGAATTAATCA+AGG | 0.516175 | tig0027382:-4815 | Msa1433590:intron |
TCTAAATTCTAACAGAGGAT+GGG | 0.518657 | tig0027382:+3509 | None:intergenic |
GTATAATGAGATTAGGAAGC+CGG | 0.518765 | tig0027382:-7969 | Msa1433590:CDS |
TGTTGTTCCTTCTTCACGGA+AGG | 0.521205 | tig0027382:+7046 | None:intergenic |
ACACAGAGGCGAACCGAAGA+TGG | 0.523143 | tig0027382:-8276 | Msa1433590:exon |
GAGCTACACAAGCCAGTTAG+TGG | 0.523204 | tig0027382:-3821 | Msa1433590:three_prime_UTR |
GCGACAATCATGAGAAGAAA+GGG | 0.529007 | tig0027382:-6308 | Msa1433590:CDS |
TAATGATGAAGCGAGTGATA+AGG | 0.530659 | tig0027382:-8011 | Msa1433590:CDS |
TGAAGCTGATGATGAGGTAA+TGG | 0.532222 | tig0027382:-4603 | Msa1433590:CDS |
GAAAACGCGAAAGGGTGTTA+GGG | 0.538787 | tig0027382:+8347 | None:intergenic |
TAGATATTGATATTTGCCAT+CGG | 0.539028 | tig0027382:-3490 | Msa1433590:three_prime_UTR |
GATCCAAGATGACCTCGAAA+AGG | 0.540267 | tig0027382:-8165 | Msa1433590:intron |
TATCACTAAAATTGCACGAT+GGG | 0.540851 | tig0027382:+3745 | None:intergenic |
CTCATTCAGTAGTTCACTGA+GGG | 0.542426 | tig0027382:+7756 | None:intergenic |
TTCCGACTATAGTTAACTTG+CGG | 0.542706 | tig0027382:+3596 | None:intergenic |
TGACGAAGAGGGTGATGATG+AGG | 0.543527 | tig0027382:-3968 | Msa1433590:CDS |
CTCTTCTTCATCAACTTCCG+CGG | 0.546448 | tig0027382:-8311 | Msa1433590:five_prime_UTR |
CTAAATTCTAACAGAGGATG+GGG | 0.550552 | tig0027382:+3510 | None:intergenic |
CTCATCATCAGCTTCATCAT+CGG | 0.555556 | tig0027382:+4610 | None:intergenic |
CAAGTATTTGAGTTCTCTTG+AGG | 0.559002 | tig0027382:-7337 | Msa1433590:CDS |
GATCTCTTGCAATTTCTCGA+TGG | 0.566477 | tig0027382:+8184 | None:intergenic |
TCCCGCAAGTTAACTATAGT+CGG | 0.568159 | tig0027382:-3598 | Msa1433590:three_prime_UTR |
GTAGTTCACTGAGGGTAGGA+TGG | 0.569898 | tig0027382:+7764 | None:intergenic |
CCTCAGTGAACTACTGAATG+AGG | 0.570986 | tig0027382:-7755 | Msa1433590:CDS |
ACAGGAGGAGCCTGATGAAG+AGG | 0.571562 | tig0027382:-4636 | Msa1433590:intron |
GGTGGAATGAAAACGCGAAA+GGG | 0.576072 | tig0027382:+8339 | None:intergenic |
CAAGTTAACTATAGTCGGAA+AGG | 0.579049 | tig0027382:-3593 | Msa1433590:three_prime_UTR |
AGAGGCGAACCGAAGATGGT+TGG | 0.579592 | tig0027382:-8272 | Msa1433590:exon |
CATAAAATGGAAAGAAGGCA+AGG | 0.587844 | tig0027382:-7006 | Msa1433590:intron |
TTTATGCTAAGATACCCAAA+CGG | 0.589342 | tig0027382:+3651 | None:intergenic |
ATGCCCTGAAAGAAAGGCCA+TGG | 0.592269 | tig0027382:+3863 | None:intergenic |
TGATGAAGAAGAGAAAAGGG+TGG | 0.594767 | tig0027382:+8321 | None:intergenic |
CTTGCAATTTCTCGATGGAG+AGG | 0.599246 | tig0027382:+8189 | None:intergenic |
AGACGAGGACGACTCTGAAG+AGG | 0.603159 | tig0027382:-3992 | Msa1433590:CDS |
CTAGAAGAAATTACTTGACA+GGG | 0.603479 | tig0027382:+3773 | None:intergenic |
GGGTGGAATGAAAACGCGAA+AGG | 0.604662 | tig0027382:+8338 | None:intergenic |
GGAAGCCGGTTTACGATAAG+CGG | 0.605546 | tig0027382:-7955 | Msa1433590:CDS |
CATTAACTCATGTCAGCAAG+TGG | 0.610410 | tig0027382:-3843 | Msa1433590:three_prime_UTR |
GGTAATTGATAAATTATGGT+CGG | 0.611413 | tig0027382:+3794 | None:intergenic |
CTCTGAAGAGGATGACGAAG+AGG | 0.619244 | tig0027382:-3980 | Msa1433590:CDS |
TCTGAAGAGGATGACGAAGA+GGG | 0.630726 | tig0027382:-3979 | Msa1433590:CDS |
TTCAGTAGTTCACTGAGGGT+AGG | 0.637147 | tig0027382:+7760 | None:intergenic |
GAAGAGGGTGATGATGAGGA+AGG | 0.646490 | tig0027382:-3964 | Msa1433590:CDS |
GACTATAGTTAACTTGCGGG+AGG | 0.653498 | tig0027382:+3600 | None:intergenic |
CAATATCTAAATTCTAACAG+AGG | 0.654569 | tig0027382:+3504 | None:intergenic |
TACATGTAGGGAATACCCAA+TGG | 0.673035 | tig0027382:-6330 | Msa1433590:intron |
CGATGATGAAGCTGATGATG+AGG | 0.673202 | tig0027382:-4609 | Msa1433590:CDS |
ACACTGTTGAAATAAATGAG+TGG | 0.676235 | tig0027382:+4775 | None:intergenic |
CCTCATTCAGTAGTTCACTG+AGG | 0.684849 | tig0027382:+7755 | None:intergenic |
ACCAACCTGACATCAACAGG+AGG | 0.699036 | tig0027382:+6276 | None:intergenic |
GTATCACTAAAATTGCACGA+TGG | 0.702616 | tig0027382:+3744 | None:intergenic |
GGCAATCTTCACTCACACAG+AGG | 0.721891 | tig0027382:-8290 | Msa1433590:five_prime_UTR |
TATGGCTGACATTCACGACG+AGG | 0.776284 | tig0027382:-4994 | Msa1433590:intron |
TGTGTGAGTGAAGATTGCCG+CGG | 0.840253 | tig0027382:+8294 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAAATATATGATAGTTTA+AGG | - | tig0027382:5296-5315 | Msa1433590:intron | 10.0% |
!! | TTAAATATATGATAGTTTAA+GGG | - | tig0027382:5297-5316 | Msa1433590:intron | 10.0% |
!! | AAATGTTAATATAAAGAATA+TGG | - | tig0027382:7512-7531 | Msa1433590:intron | 10.0% |
!!! | ATTGTGTTTTAATAATTATG+TGG | - | tig0027382:3766-3785 | Msa1433590:three_prime_UTR | 15.0% |
!! | ATATCTATCAAATAAAGAAT+TGG | + | tig0027382:4469-4488 | None:intergenic | 15.0% |
!! | AAAAATTATAAATGCTGATA+GGG | + | tig0027382:4873-4892 | None:intergenic | 15.0% |
!! | TAAAAATTATAAATGCTGAT+AGG | + | tig0027382:4874-4893 | None:intergenic | 15.0% |
!! | TCAACAACAAAAAATATATA+AGG | + | tig0027382:5373-5392 | None:intergenic | 15.0% |
!!! | CATTTTGTATAAACATATAA+AGG | + | tig0027382:5676-5695 | None:intergenic | 15.0% |
!!! | AAATGTTTTTTTACATGAAA+GGG | + | tig0027382:6545-6564 | None:intergenic | 15.0% |
!!! | AAAATGTTTTTTTACATGAA+AGG | + | tig0027382:6546-6565 | None:intergenic | 15.0% |
!!! | TTCACATTATTTATTGTTTT+CGG | + | tig0027382:7617-7636 | None:intergenic | 15.0% |
!! | TGTTTGTCATTAATTTAAAA+TGG | + | tig0027382:7766-7785 | None:intergenic | 15.0% |
!! | TGCATGATTATAATTTATAT+TGG | - | tig0027382:8294-8313 | Msa1433590:five_prime_UTR | 15.0% |
!! | GCTTCAATTGAATAAAAAAA+CGG | + | tig0027382:3690-3709 | None:intergenic | 20.0% |
!! | AACACAATTCAAATCAAATT+AGG | + | tig0027382:3754-3773 | None:intergenic | 20.0% |
!!! | TGAAGTGATTTTCAAATTTT+CGG | + | tig0027382:4590-4609 | None:intergenic | 20.0% |
!! | AAAATTATAAATGCTGATAG+GGG | + | tig0027382:4872-4891 | None:intergenic | 20.0% |
!!! | ATAAATCATAAGTTTCAAGT+AGG | - | tig0027382:5041-5060 | Msa1433590:intron | 20.0% |
!!! | TAAATCATAAGTTTCAAGTA+GGG | - | tig0027382:5042-5061 | Msa1433590:intron | 20.0% |
!! | TGATTAGAAATACAATCATT+AGG | - | tig0027382:5226-5245 | Msa1433590:intron | 20.0% |
!!! | AATCCTTTTAAAGTAGATTT+AGG | + | tig0027382:5948-5967 | None:intergenic | 20.0% |
!! | ATTTGCAAATGAAAATACTT+TGG | + | tig0027382:6168-6187 | None:intergenic | 20.0% |
!! | TTTGAGAAATATGTTGTTAA+AGG | - | tig0027382:6696-6715 | Msa1433590:intron | 20.0% |
!! | AGTGAATTGAATATTATACA+AGG | + | tig0027382:6987-7006 | None:intergenic | 20.0% |
!! | AATTAATCAAGGATGATTTA+TGG | - | tig0027382:7023-7042 | Msa1433590:CDS | 20.0% |
!! | AAAATGACAAATAATGCATT+TGG | + | tig0027382:7118-7137 | None:intergenic | 20.0% |
!!! | TCTATTTTTTCCAAGAAAAA+CGG | + | tig0027382:7255-7274 | None:intergenic | 20.0% |
!! | TATTGCTCATAATAATTGTT+TGG | - | tig0027382:7299-7318 | Msa1433590:CDS | 20.0% |
!! | TGAAAATTATGAATTCAGTA+TGG | + | tig0027382:7344-7363 | None:intergenic | 20.0% |
!! | TTAATCCTAAACATTGTTAA+AGG | - | tig0027382:7707-7726 | Msa1433590:intron | 20.0% |
!! | CTCAAACCAAAAAAATAAAA+AGG | + | tig0027382:7917-7936 | None:intergenic | 20.0% |
! | ATTATTTGATCCACCAAATT+AGG | - | tig0027382:3724-3743 | Msa1433590:three_prime_UTR | 25.0% |
! | CAAATTAGGTTAACCTAATT+TGG | + | tig0027382:3738-3757 | None:intergenic | 25.0% |
!!! | TTCTGTGGAAGTATTTTTTA+AGG | - | tig0027382:4209-4228 | Msa1433590:intron | 25.0% |
! | CATGAAAGAACATAATAAGT+GGG | + | tig0027382:4369-4388 | None:intergenic | 25.0% |
! | ACATGAAAGAACATAATAAG+TGG | + | tig0027382:4370-4389 | None:intergenic | 25.0% |
!! | ATTTTCAAATTTTCGGAAGA+GGG | + | tig0027382:4583-4602 | None:intergenic | 25.0% |
! | CTTCATTGCAATGAAAAATA+TGG | - | tig0027382:4605-4624 | Msa1433590:CDS | 25.0% |
!!! | AGTTTTGAATCCTCAAAATA+GGG | + | tig0027382:4747-4766 | None:intergenic | 25.0% |
!!! | AAGTTTTGAATCCTCAAAAT+AGG | + | tig0027382:4748-4767 | None:intergenic | 25.0% |
! | GATTTGAAAAAGTTTCACAT+TGG | + | tig0027382:4918-4937 | None:intergenic | 25.0% |
!!! | TTTTTCAAATCTACATGACA+TGG | - | tig0027382:4927-4946 | Msa1433590:intron | 25.0% |
!!! | TTAAACTTGCTAAAAGTAGA+GGG | - | tig0027382:4956-4975 | Msa1433590:intron | 25.0% |
! | AATCTGTAAATCTCACAATT+TGG | + | tig0027382:5333-5352 | None:intergenic | 25.0% |
! | TTGTGAGATTTACAGATTAA+TGG | - | tig0027382:5335-5354 | Msa1433590:intron | 25.0% |
! | CTGTCGAAAAAAAAAAAAGA+AGG | + | tig0027382:5433-5452 | None:intergenic | 25.0% |
!!! | TCTTTTTTTTTTTTCGACAG+AGG | - | tig0027382:5433-5452 | Msa1433590:intron | 25.0% |
! | GTTAGTAAAATACAACAACA+AGG | + | tig0027382:5465-5484 | None:intergenic | 25.0% |
! | GTTTATACAAAATGAACTTC+TGG | - | tig0027382:5682-5701 | Msa1433590:intron | 25.0% |
! | TTTATTGATGTCCTAATTGA+CGG | + | tig0027382:5764-5783 | None:intergenic | 25.0% |
! | TCAATTAGGACATCAATAAA+GGG | - | tig0027382:5764-5783 | Msa1433590:intron | 25.0% |
! | AAAAAAGGAAAAGAGGAATT+TGG | + | tig0027382:5824-5843 | None:intergenic | 25.0% |
! | ACTGAAAAGAAGAAGAAAAA+AGG | + | tig0027382:5839-5858 | None:intergenic | 25.0% |
! | ATGCCTAAATCTACTTTAAA+AGG | - | tig0027382:5942-5961 | Msa1433590:intron | 25.0% |
! | ACTTTGGTATTGTTAAATAG+CGG | + | tig0027382:6152-6171 | None:intergenic | 25.0% |
! | TTCATTTGCAAATAATTGAC+TGG | - | tig0027382:6175-6194 | Msa1433590:intron | 25.0% |
! | ACAATTGATCAAATTTCTCT+TGG | + | tig0027382:6283-6302 | None:intergenic | 25.0% |
! | TGATCAATTGTATACTTGAT+TGG | - | tig0027382:6292-6311 | Msa1433590:CDS | 25.0% |
!!! | TTTTTTACATGAAAGGGTTT+TGG | + | tig0027382:6539-6558 | None:intergenic | 25.0% |
!! | GTTTTTCTTGGAAAAAATAG+AGG | - | tig0027382:7254-7273 | Msa1433590:intron | 25.0% |
!! | AGGTGATTAACAAAAGTTTT+TGG | - | tig0027382:7274-7293 | Msa1433590:intron | 25.0% |
!! | GGTGATTAACAAAAGTTTTT+GGG | - | tig0027382:7275-7294 | Msa1433590:intron | 25.0% |
! | TTCAATTAAAGAGTTTGATG+CGG | - | tig0027382:7360-7379 | Msa1433590:intron | 25.0% |
! | AAGAATATGGAACTATAAGT+TGG | - | tig0027382:7525-7544 | Msa1433590:intron | 25.0% |
! | TCATTCTAACTTAAAGCTTT+AGG | + | tig0027382:7584-7603 | None:intergenic | 25.0% |
! | TGATAACCTCAAAAAAAACT+TGG | - | tig0027382:7660-7679 | Msa1433590:intron | 25.0% |
! | TAGATCCTTTAACAATGTTT+AGG | + | tig0027382:7715-7734 | None:intergenic | 25.0% |
! | AAATAATATTTCTTGTTCGC+AGG | - | tig0027382:7808-7827 | Msa1433590:intron | 25.0% |
!!! | GTGTGACCTTTTTATTTTTT+TGG | - | tig0027382:7908-7927 | Msa1433590:intron | 25.0% |
!!! | TTTTGGTTTGAGTATGTATT+AGG | - | tig0027382:7925-7944 | Msa1433590:CDS | 25.0% |
! | GGTAATTGATAAATTATGGT+CGG | + | tig0027382:8036-8055 | None:intergenic | 25.0% |
! | ACAGGGTAATTGATAAATTA+TGG | + | tig0027382:8040-8059 | None:intergenic | 25.0% |
!!! | GTATATTAGCTTTCTCTTTT+GGG | - | tig0027382:8111-8130 | Msa1433590:intron | 25.0% |
! | CAATATCTAAATTCTAACAG+AGG | + | tig0027382:8326-8345 | None:intergenic | 25.0% |
! | TAGATATTGATATTTGCCAT+CGG | - | tig0027382:8337-8356 | Msa1433590:five_prime_UTR | 25.0% |
!! | AGTTGATGAAGAAGAGAAAA+GGG | + | tig0027382:3512-3531 | None:intergenic | 30.0% |
!! | AAGTTGATGAAGAAGAGAAA+AGG | + | tig0027382:3513-3532 | None:intergenic | 30.0% |
ATTAGGTTAACCTAATTTGG+TGG | + | tig0027382:3737-3756 | None:intergenic | 30.0% | |
! | AGCAGAAGTATAATGAGATT+AGG | - | tig0027382:3851-3870 | Msa1433590:three_prime_UTR | 30.0% |
TCAAATCTATTCCTGATTTC+TGG | - | tig0027382:3905-3924 | Msa1433590:three_prime_UTR | 30.0% | |
!! | TTGGTTTGTTTGTATGATTC+TGG | - | tig0027382:4171-4190 | Msa1433590:intron | 30.0% |
! | GTATGATTCTGGAAATTACT+CGG | - | tig0027382:4182-4201 | Msa1433590:intron | 30.0% |
! | AAAACGAAACAGAATGGTTT+TGG | - | tig0027382:4256-4275 | Msa1433590:intron | 30.0% |
TACTTTGATTCCATGGAAAA+TGG | + | tig0027382:4287-4306 | None:intergenic | 30.0% | |
GTGATATTACTTTGATTCCA+TGG | + | tig0027382:4294-4313 | None:intergenic | 30.0% | |
!!! | GGTTTTGTTCCTTTGATTAA+CGG | - | tig0027382:4417-4436 | Msa1433590:intron | 30.0% |
TCTTGAGGTTGAAGATAATA+AGG | - | tig0027382:4505-4524 | Msa1433590:intron | 30.0% | |
GATAATAAGGATGTCAAATC+TGG | - | tig0027382:4518-4537 | Msa1433590:intron | 30.0% | |
! | TTTTCAAATTTTCGGAAGAG+GGG | + | tig0027382:4582-4601 | None:intergenic | 30.0% |
! | GATTTTCAAATTTTCGGAAG+AGG | + | tig0027382:4584-4603 | None:intergenic | 30.0% |
GTCAGTAGAAAATCAACATT+TGG | + | tig0027382:4678-4697 | None:intergenic | 30.0% | |
TCTGAACATGAAATGATTAC+TGG | + | tig0027382:4710-4729 | None:intergenic | 30.0% | |
! | TTGCCTTCTTTCCATTTTAT+GGG | + | tig0027382:4822-4841 | None:intergenic | 30.0% |
!! | CTTAAACTTGCTAAAAGTAG+AGG | - | tig0027382:4955-4974 | Msa1433590:intron | 30.0% |
TGAGTGATACTTTACTATTG+CGG | + | tig0027382:5094-5113 | None:intergenic | 30.0% | |
AAAGTTACCCCACAATTAAA+AGG | - | tig0027382:5125-5144 | Msa1433590:intron | 30.0% | |
!! | ATTACAGGCCTTTTAATTGT+GGG | + | tig0027382:5136-5155 | None:intergenic | 30.0% |
ACAGATTCATACAACATTAC+AGG | + | tig0027382:5151-5170 | None:intergenic | 30.0% | |
TTGTATGAATCTGTTCACTT+GGG | - | tig0027382:5157-5176 | Msa1433590:intron | 30.0% | |
ACATAATCCTGATACATGTA+GGG | - | tig0027382:5485-5504 | Msa1433590:intron | 30.0% | |
ACTAATATGCATCATGAACA+TGG | + | tig0027382:5633-5652 | None:intergenic | 30.0% | |
! | TATTAGTTTCCACTTGTTCT+TGG | - | tig0027382:5646-5665 | Msa1433590:intron | 30.0% |
GTCAATTAGGACATCAATAA+AGG | - | tig0027382:5763-5782 | Msa1433590:intron | 30.0% | |
AAACAAGCATCACTAATCAA+GGG | + | tig0027382:5790-5809 | None:intergenic | 30.0% | |
AAAACAAGCATCACTAATCA+AGG | + | tig0027382:5791-5810 | None:intergenic | 30.0% | |
! | TTGATTAGTGATGCTTGTTT+TGG | - | tig0027382:5790-5809 | Msa1433590:intron | 30.0% |
GAAGAAGAAAAAAGGAAAAG+AGG | + | tig0027382:5831-5850 | None:intergenic | 30.0% | |
TTTATTCCAATATGACCAAG+CGG | - | tig0027382:5863-5882 | Msa1433590:intron | 30.0% | |
CATAACACAATACAATACAG+AGG | - | tig0027382:5919-5938 | Msa1433590:intron | 30.0% | |
TATCTCCGTCAATTATTTGA+CGG | - | tig0027382:6219-6238 | Msa1433590:intron | 30.0% | |
TCAATTGTATACTTGATTGG+AGG | - | tig0027382:6295-6314 | Msa1433590:CDS | 30.0% | |
!!! | TGGTACCAATTTTTTCCAAT+AGG | - | tig0027382:6353-6372 | Msa1433590:intron | 30.0% |
!! | CAAATATGAAGGTGGTTTTA+AGG | + | tig0027382:6634-6653 | None:intergenic | 30.0% |
TAAAACCACCTTCATATTTG+AGG | - | tig0027382:6634-6653 | Msa1433590:intron | 30.0% | |
TCATTAGCACAAGAAATCAA+AGG | + | tig0027382:6768-6787 | None:intergenic | 30.0% | |
ACACTGTTGAAATAAATGAG+TGG | + | tig0027382:7055-7074 | None:intergenic | 30.0% | |
AGCTACAGTTAGAAACATAA+CGG | + | tig0027382:7159-7178 | None:intergenic | 30.0% | |
GTAGCTGATTGTAATATAAC+AGG | - | tig0027382:7173-7192 | Msa1433590:intron | 30.0% | |
AAAAAGTTATGCATTCAGCA+TGG | + | tig0027382:7406-7425 | None:intergenic | 30.0% | |
TGAAAATTAAAGTTCGGTTC+AGG | + | tig0027382:7467-7486 | None:intergenic | 30.0% | |
CGCGAATGAAAATTAAAGTT+CGG | + | tig0027382:7473-7492 | None:intergenic | 30.0% | |
! | TTAATTTTCATTCGCGATCT+AGG | - | tig0027382:7477-7496 | Msa1433590:intron | 30.0% |
!!! | AACTTGCCAAGTTTTTTTTG+AGG | + | tig0027382:7669-7688 | None:intergenic | 30.0% |
ATTAATGACAAACACAGCTT+TGG | - | tig0027382:7772-7791 | Msa1433590:CDS | 30.0% | |
AGGCAATTGAAAATGCATTA+TGG | - | tig0027382:7883-7902 | Msa1433590:intron | 30.0% | |
! | TTGAGTATGTATTAGGCTTT+TGG | - | tig0027382:7932-7951 | Msa1433590:CDS | 30.0% |
! | TGAGTATGTATTAGGCTTTT+GGG | - | tig0027382:7933-7952 | Msa1433590:CDS | 30.0% |
CTAGAAGAAATTACTTGACA+GGG | + | tig0027382:8057-8076 | None:intergenic | 30.0% | |
ACTAGAAGAAATTACTTGAC+AGG | + | tig0027382:8058-8077 | None:intergenic | 30.0% | |
TATCACTAAAATTGCACGAT+GGG | + | tig0027382:8085-8104 | None:intergenic | 30.0% | |
!! | TGCAATTTTAGTGATACTCA+TGG | - | tig0027382:8089-8108 | Msa1433590:intron | 30.0% |
!!! | GGTATATTAGCTTTCTCTTT+TGG | - | tig0027382:8110-8129 | Msa1433590:intron | 30.0% |
TTTATGCTAAGATACCCAAA+CGG | + | tig0027382:8179-8198 | None:intergenic | 30.0% | |
TTGGGTATCTTAGCATAAAA+AGG | - | tig0027382:8180-8199 | Msa1433590:CDS | 30.0% | |
GATCTTTATGCATAACTTTC+TGG | - | tig0027382:8256-8275 | Msa1433590:CDS | 30.0% | |
TCTAAATTCTAACAGAGGAT+GGG | + | tig0027382:8321-8340 | None:intergenic | 30.0% | |
ATCTAAATTCTAACAGAGGA+TGG | + | tig0027382:8322-8341 | None:intergenic | 30.0% | |
AGATATTGATATTTGCCATC+GGG | - | tig0027382:8338-8357 | Msa1433590:five_prime_UTR | 30.0% | |
! | ATCAACTTCTTCGGGATTTT+CGG | + | tig0027382:3607-3626 | None:intergenic | 35.0% |
! | AAAAAAACGGTACCTTTTCG+AGG | + | tig0027382:3677-3696 | None:intergenic | 35.0% |
TAATGATGAAGCGAGTGATA+AGG | - | tig0027382:3816-3835 | Msa1433590:three_prime_UTR | 35.0% | |
GTATAATGAGATTAGGAAGC+CGG | - | tig0027382:3858-3877 | Msa1433590:three_prime_UTR | 35.0% | |
! | GTTTTCCATGTTGTTACGTT+TGG | - | tig0027382:4152-4171 | Msa1433590:intron | 35.0% |
ACAAACCAAACGTAACAACA+TGG | + | tig0027382:4160-4179 | None:intergenic | 35.0% | |
!! | TTTGGTTTCACCATTTTCCA+TGG | - | tig0027382:4274-4293 | Msa1433590:intron | 35.0% |
AAACCTAGCAATTGTTCAGA+AGG | + | tig0027382:4402-4421 | None:intergenic | 35.0% | |
CTTTGATTAACGGTTCTGTT+GGG | - | tig0027382:4427-4446 | Msa1433590:intron | 35.0% | |
! | CAAGTATTTGAGTTCTCTTG+AGG | - | tig0027382:4490-4509 | Msa1433590:intron | 35.0% |
! | TTTCAAATTTTCGGAAGAGG+GGG | + | tig0027382:4581-4600 | None:intergenic | 35.0% |
GAATCCTCAAAATAGGGATT+GGG | + | tig0027382:4741-4760 | None:intergenic | 35.0% | |
TGAATCCTCAAAATAGGGAT+TGG | + | tig0027382:4742-4761 | None:intergenic | 35.0% | |
! | TGCCTTCTTTCCATTTTATG+GGG | + | tig0027382:4821-4840 | None:intergenic | 35.0% |
! | CTTGCCTTCTTTCCATTTTA+TGG | + | tig0027382:4823-4842 | None:intergenic | 35.0% |
CATAAAATGGAAAGAAGGCA+AGG | - | tig0027382:4821-4840 | Msa1433590:intron | 35.0% | |
! | AAAGTATCACTCAAGTTTGC+AGG | - | tig0027382:5101-5120 | Msa1433590:intron | 35.0% |
!! | TTACAGGCCTTTTAATTGTG+GGG | + | tig0027382:5135-5154 | None:intergenic | 35.0% |
!! | CATTACAGGCCTTTTAATTG+TGG | + | tig0027382:5137-5156 | None:intergenic | 35.0% |
GTTGTATGAATCTGTTCACT+TGG | - | tig0027382:5156-5175 | Msa1433590:intron | 35.0% | |
TGTATGAATCTGTTCACTTG+GGG | - | tig0027382:5158-5177 | Msa1433590:intron | 35.0% | |
! | AAGACCTCTAGAAGAACAAA+TGG | - | tig0027382:5259-5278 | Msa1433590:intron | 35.0% |
! | AGACCTCTAGAAGAACAAAT+GGG | - | tig0027382:5260-5279 | Msa1433590:intron | 35.0% |
GATAGTTTAAGGGAAACTGT+TGG | - | tig0027382:5307-5326 | Msa1433590:intron | 35.0% | |
TTGTTGAGTGATCCATATAG+TGG | - | tig0027382:5386-5405 | Msa1433590:intron | 35.0% | |
CACATAATCCTGATACATGT+AGG | - | tig0027382:5484-5503 | Msa1433590:intron | 35.0% | |
ATGAGAAGAAAGGGAACAAA+AGG | - | tig0027382:5528-5547 | Msa1433590:intron | 35.0% | |
! | TTTGTTATCATGGACAAAGC+TGG | + | tig0027382:5722-5741 | None:intergenic | 35.0% |
!! | AACTCGTGAGTTTGTTATCA+TGG | + | tig0027382:5732-5751 | None:intergenic | 35.0% |
TTATAATCCTGCCGTCAATT+AGG | - | tig0027382:5750-5769 | Msa1433590:intron | 35.0% | |
! | ATCCCACAGTTTGATGATTA+CGG | - | tig0027382:5974-5993 | Msa1433590:intron | 35.0% |
ATCCGTAATCATCAAACTGT+GGG | + | tig0027382:5979-5998 | None:intergenic | 35.0% | |
TATCCGTAATCATCAAACTG+TGG | + | tig0027382:5980-5999 | None:intergenic | 35.0% | |
! | TAGTAATGGGAAAGTTGTTC+AGG | + | tig0027382:6028-6047 | None:intergenic | 35.0% |
TCCATAGCAACGATAGTAAT+GGG | + | tig0027382:6041-6060 | None:intergenic | 35.0% | |
TTCCATAGCAACGATAGTAA+TGG | + | tig0027382:6042-6061 | None:intergenic | 35.0% | |
GCGAAAGAATCATATTGTAG+CGG | - | tig0027382:6086-6105 | Msa1433590:intron | 35.0% | |
TGACGGAGATAATTCTTCAA+AGG | + | tig0027382:6210-6229 | None:intergenic | 35.0% | |
TGTATACTTGATTGGAGGTT+TGG | - | tig0027382:6300-6319 | Msa1433590:CDS | 35.0% | |
GTATACTTGATTGGAGGTTT+GGG | - | tig0027382:6301-6320 | Msa1433590:CDS | 35.0% | |
AGGGACCTATTGGAAAAAAT+TGG | + | tig0027382:6361-6380 | None:intergenic | 35.0% | |
!! | GTGAAAAGTATTGACCTTTC+AGG | - | tig0027382:6465-6484 | Msa1433590:intron | 35.0% |
! | TAAAGGCTTAAAGCTCCTTT+TGG | - | tig0027382:6713-6732 | Msa1433590:intron | 35.0% |
! | TTCAATGAAGCGTTTCCAAA+AGG | + | tig0027382:6731-6750 | None:intergenic | 35.0% |
GAAACGCTTCATTGAACAAA+TGG | - | tig0027382:6735-6754 | Msa1433590:intron | 35.0% | |
ATGAATGCAGTTTCCTTAGT+TGG | - | tig0027382:6784-6803 | Msa1433590:intron | 35.0% | |
AGAAACTACTTGAGAAGAAC+AGG | + | tig0027382:6872-6891 | None:intergenic | 35.0% | |
GCTGATTGTAATATAACAGG+AGG | - | tig0027382:7176-7195 | Msa1433590:intron | 35.0% | |
!! | AATGGAAGTTCCGTTTTTCT+TGG | - | tig0027382:7242-7261 | Msa1433590:intron | 35.0% |
GTATCACTAAAATTGCACGA+TGG | + | tig0027382:8086-8105 | None:intergenic | 35.0% | |
! | TTCCGACTATAGTTAACTTG+CGG | + | tig0027382:8234-8253 | None:intergenic | 35.0% |
CAAGTTAACTATAGTCGGAA+AGG | - | tig0027382:8234-8253 | Msa1433590:CDS | 35.0% | |
CTAAATTCTAACAGAGGATG+GGG | + | tig0027382:8320-8339 | None:intergenic | 35.0% | |
TGATGAAGAAGAGAAAAGGG+TGG | + | tig0027382:3509-3528 | None:intergenic | 40.0% | |
AGTTCAGCATCAACTTCTTC+GGG | + | tig0027382:3615-3634 | None:intergenic | 40.0% | |
GAGTTCAGCATCAACTTCTT+CGG | + | tig0027382:3616-3635 | None:intergenic | 40.0% | |
GATCTCTTGCAATTTCTCGA+TGG | + | tig0027382:3646-3665 | None:intergenic | 40.0% | |
ACAGCATTCAACCAGAAATC+AGG | + | tig0027382:3919-3938 | None:intergenic | 40.0% | |
CTCATTCAGTAGTTCACTGA+GGG | + | tig0027382:4074-4093 | None:intergenic | 40.0% | |
GTGGACAAAACGAAACAGAA+TGG | - | tig0027382:4250-4269 | Msa1433590:intron | 40.0% | |
CCAACAGAACCGTTAATCAA+AGG | + | tig0027382:4429-4448 | None:intergenic | 40.0% | |
CCTTTGATTAACGGTTCTGT+TGG | - | tig0027382:4426-4445 | Msa1433590:intron | 40.0% | |
AGAAGAAGGGCAACTTACAA+GGG | + | tig0027382:4555-4574 | None:intergenic | 40.0% | |
! | CAATCCCAATCCCTATTTTG+AGG | - | tig0027382:4734-4753 | Msa1433590:intron | 40.0% |
! | ACTTTTACCTTCCGTGAAGA+AGG | - | tig0027382:4774-4793 | Msa1433590:intron | 40.0% |
TCTCTGTTGTTCCTTCTTCA+CGG | + | tig0027382:4788-4807 | None:intergenic | 40.0% | |
ACCCCCATAAAATGGAAAGA+AGG | - | tig0027382:4816-4835 | Msa1433590:intron | 40.0% | |
! | GCCTTCTTTCCATTTTATGG+GGG | + | tig0027382:4820-4839 | None:intergenic | 40.0% |
AATGGAAAGAAGGCAAGGTA+AGG | - | tig0027382:4826-4845 | Msa1433590:intron | 40.0% | |
ATGGAAAGAAGGCAAGGTAA+GGG | - | tig0027382:4827-4846 | Msa1433590:intron | 40.0% | |
TCGAACTTGATGAGATGCAT+AGG | - | tig0027382:4993-5012 | Msa1433590:intron | 40.0% | |
CGAACTTGATGAGATGCATA+GGG | - | tig0027382:4994-5013 | Msa1433590:intron | 40.0% | |
GAGATGCATAGGGAAAATAG+TGG | - | tig0027382:5004-5023 | Msa1433590:CDS | 40.0% | |
GTATGAATCTGTTCACTTGG+GGG | - | tig0027382:5159-5178 | Msa1433590:intron | 40.0% | |
! | GACCTCTAGAAGAACAAATG+GGG | - | tig0027382:5261-5280 | Msa1433590:intron | 40.0% |
TCTAGAAGAACAAATGGGGA+GGG | - | tig0027382:5265-5284 | Msa1433590:intron | 40.0% | |
! | AGGTCTTTTACCATGAGCTT+GGG | + | tig0027382:5413-5432 | None:intergenic | 40.0% |
! | AAGGTCTTTTACCATGAGCT+TGG | + | tig0027382:5414-5433 | None:intergenic | 40.0% |
TACATGTAGGGAATACCCAA+TGG | - | tig0027382:5497-5516 | Msa1433590:intron | 40.0% | |
TTCTCATGATTGTCGCCATT+GGG | + | tig0027382:5515-5534 | None:intergenic | 40.0% | |
GCGACAATCATGAGAAGAAA+GGG | - | tig0027382:5519-5538 | Msa1433590:intron | 40.0% | |
ATATTTCCTTACCTTCCGCT+TGG | + | tig0027382:5881-5900 | None:intergenic | 40.0% | |
AGCGGAAGGTAAGGAAATAT+TGG | - | tig0027382:5881-5900 | Msa1433590:intron | 40.0% | |
GCGGAAGGTAAGGAAATATT+GGG | - | tig0027382:5882-5901 | Msa1433590:intron | 40.0% | |
!! | GAAAGTTGTTCAGGTTGTTG+AGG | + | tig0027382:6019-6038 | None:intergenic | 40.0% |
TCCCATTACTATCGTTGCTA+TGG | - | tig0027382:6037-6056 | Msa1433590:intron | 40.0% | |
TTTCGCTATCAGTGCAATAG+CGG | + | tig0027382:6072-6091 | None:intergenic | 40.0% | |
TCCGTCAATTATTTGACGGA+TGG | - | tig0027382:6223-6242 | Msa1433590:intron | 40.0% | |
GCCATCCGTCAAATAATTGA+CGG | + | tig0027382:6227-6246 | None:intergenic | 40.0% | |
TGAATCCACCCGTCAAATAT+GGG | + | tig0027382:6250-6269 | None:intergenic | 40.0% | |
TTGAATCCACCCGTCAAATA+TGG | + | tig0027382:6251-6270 | None:intergenic | 40.0% | |
! | TATTTGACGGGTGGATTCAA+TGG | - | tig0027382:6251-6270 | Msa1433590:intron | 40.0% |
!! | ATGGTGGATGTTTAAGAGTC+TGG | - | tig0027382:6333-6352 | Msa1433590:intron | 40.0% |
! | GCAAAGCACACAAGTTTTAC+TGG | + | tig0027382:6385-6404 | None:intergenic | 40.0% |
GAGACTGCTCTTGACAATAT+GGG | + | tig0027382:6418-6437 | None:intergenic | 40.0% | |
AGAGACTGCTCTTGACAATA+TGG | + | tig0027382:6419-6438 | None:intergenic | 40.0% | |
!! | TGGAAGAGTATCTTTATGCC+TGG | - | tig0027382:6494-6513 | Msa1433590:intron | 40.0% |
AGCAAGACAGAGAGTAAAGT+AGG | - | tig0027382:6587-6606 | Msa1433590:intron | 40.0% | |
TCTGTCCTCAAATATGAAGG+TGG | + | tig0027382:6642-6661 | None:intergenic | 40.0% | |
GCTTCTGTCCTCAAATATGA+AGG | + | tig0027382:6645-6664 | None:intergenic | 40.0% | |
CACAGTCACAAAACCAACTA+AGG | + | tig0027382:6800-6819 | None:intergenic | 40.0% | |
CTGTGAGCAGAAAGATGATA+TGG | - | tig0027382:6815-6834 | Msa1433590:intron | 40.0% | |
ACACGTGGAAAACAAAGACA+GGG | + | tig0027382:6907-6926 | None:intergenic | 40.0% | |
ATTAGTCAAGTAGAGACACG+TGG | + | tig0027382:6922-6941 | None:intergenic | 40.0% | |
GCAGCTTGCAGAATTAATCA+AGG | - | tig0027382:7012-7031 | Msa1433590:CDS | 40.0% | |
CTCATCATCAGCTTCATCAT+CGG | + | tig0027382:7220-7239 | None:intergenic | 40.0% | |
! | TGAAGCTGATGATGAGGTAA+TGG | - | tig0027382:7224-7243 | Msa1433590:intron | 40.0% |
GAGTTAATGCCCTGAAAGAA+AGG | + | tig0027382:7973-7992 | None:intergenic | 40.0% | |
CATTAACTCATGTCAGCAAG+TGG | - | tig0027382:7984-8003 | Msa1433590:CDS | 40.0% | |
TACTGCATTTACTAGCCGTT+TGG | - | tig0027382:8161-8180 | Msa1433590:intron | 40.0% | |
ACTGCATTTACTAGCCGTTT+GGG | - | tig0027382:8162-8181 | Msa1433590:intron | 40.0% | |
TCCCGCAAGTTAACTATAGT+CGG | - | tig0027382:8229-8248 | Msa1433590:CDS | 40.0% | |
!! | TCCGACTATAGTTAACTTGC+GGG | + | tig0027382:8233-8252 | None:intergenic | 40.0% |
!! | GAAAACGCGAAAGGGTGTTA+GGG | + | tig0027382:3483-3502 | None:intergenic | 45.0% |
!! | TGAAAACGCGAAAGGGTGTT+AGG | + | tig0027382:3484-3503 | None:intergenic | 45.0% |
GGTGGAATGAAAACGCGAAA+GGG | + | tig0027382:3491-3510 | None:intergenic | 45.0% | |
CTCTTCTTCATCAACTTCCG+CGG | - | tig0027382:3516-3535 | Msa1433590:three_prime_UTR | 45.0% | |
GTTCTGTCTCCAACCATCTT+CGG | + | tig0027382:3567-3586 | None:intergenic | 45.0% | |
TTCGGTGAGTTTCTGCTTCT+TGG | + | tig0027382:3589-3608 | None:intergenic | 45.0% | |
CTTGCAATTTCTCGATGGAG+AGG | + | tig0027382:3641-3660 | None:intergenic | 45.0% | |
GATCCAAGATGACCTCGAAA+AGG | - | tig0027382:3662-3681 | Msa1433590:three_prime_UTR | 45.0% | |
!! | GTACCTTTTCGAGGTCATCT+TGG | + | tig0027382:3668-3687 | None:intergenic | 45.0% |
TCGTTCCGCTTATCGTAAAC+CGG | + | tig0027382:3880-3899 | None:intergenic | 45.0% | |
TTCAGTAGTTCACTGAGGGT+AGG | + | tig0027382:4070-4089 | None:intergenic | 45.0% | |
CCTCATTCAGTAGTTCACTG+AGG | + | tig0027382:4075-4094 | None:intergenic | 45.0% | |
CCTCAGTGAACTACTGAATG+AGG | - | tig0027382:4072-4091 | Msa1433590:intron | 45.0% | |
AAATTACTCGGCGTGTTCTG+TGG | - | tig0027382:4194-4213 | Msa1433590:intron | 45.0% | |
! | TGTTTCGTTTTGTCCACGCT+GGG | + | tig0027382:4247-4266 | None:intergenic | 45.0% |
CTAGCAATTGTTCAGAAGGC+AGG | + | tig0027382:4398-4417 | None:intergenic | 45.0% | |
CTGCCTTCTGAACAATTGCT+AGG | - | tig0027382:4396-4415 | Msa1433590:intron | 45.0% | |
GAGAAGAAGGGCAACTTACA+AGG | + | tig0027382:4556-4575 | None:intergenic | 45.0% | |
TGTTGTTCCTTCTTCACGGA+AGG | + | tig0027382:4784-4803 | None:intergenic | 45.0% | |
TCACTGCTACCCCCATAAAA+TGG | - | tig0027382:4808-4827 | Msa1433590:CDS | 45.0% | |
CTCCCCATTTGTTCTTCTAG+AGG | + | tig0027382:5266-5285 | None:intergenic | 45.0% | |
! | CTCTAGAAGAACAAATGGGG+AGG | - | tig0027382:5264-5283 | Msa1433590:intron | 45.0% |
ATGAGCTTGGGTCCACTATA+TGG | + | tig0027382:5401-5420 | None:intergenic | 45.0% | |
!! | ATATAGTGGACCCAAGCTCA+TGG | - | tig0027382:5400-5419 | Msa1433590:intron | 45.0% |
GGGTATTCCCTACATGTATC+AGG | + | tig0027382:5495-5514 | None:intergenic | 45.0% | |
CTTCTCATGATTGTCGCCAT+TGG | + | tig0027382:5516-5535 | None:intergenic | 45.0% | |
GGCGACAATCATGAGAAGAA+AGG | - | tig0027382:5518-5537 | Msa1433590:intron | 45.0% | |
AAAGGTCAGCCAAGAACAAG+TGG | + | tig0027382:5658-5677 | None:intergenic | 45.0% | |
TTGATGTCCTAATTGACGGC+AGG | + | tig0027382:5760-5779 | None:intergenic | 45.0% | |
TTCCAATATGACCAAGCGGA+AGG | - | tig0027382:5867-5886 | Msa1433590:intron | 45.0% | |
TACCTTCCGCTTGGTCATAT+TGG | + | tig0027382:5872-5891 | None:intergenic | 45.0% | |
ATATGACCAAGCGGAAGGTA+AGG | - | tig0027382:5872-5891 | Msa1433590:intron | 45.0% | |
!! | TTGTTCAGGTTGTTGAGGTC+TGG | + | tig0027382:6014-6033 | None:intergenic | 45.0% |
! | ATAGCGGAGCTATTGTGTAG+CGG | + | tig0027382:6136-6155 | None:intergenic | 45.0% |
GAATCCACCCGTCAAATATG+GGG | + | tig0027382:6249-6268 | None:intergenic | 45.0% | |
! | TTGATTGGAGGTTTGGGATC+AGG | - | tig0027382:6307-6326 | Msa1433590:CDS | 45.0% |
! | TGATTGGAGGTTTGGGATCA+GGG | - | tig0027382:6308-6327 | Msa1433590:CDS | 45.0% |
! | TTTTACTGGCAGGGACCTAT+TGG | + | tig0027382:6371-6390 | None:intergenic | 45.0% |
! | GCACACAAGTTTTACTGGCA+GGG | + | tig0027382:6380-6399 | None:intergenic | 45.0% |
! | AGCACACAAGTTTTACTGGC+AGG | + | tig0027382:6381-6400 | None:intergenic | 45.0% |
ATTGACCTTTCAGGAGTCGA+TGG | - | tig0027382:6474-6493 | Msa1433590:intron | 45.0% | |
! | AGAGTATCTTTATGCCTGGC+TGG | - | tig0027382:6498-6517 | Msa1433590:intron | 45.0% |
GACACGTGGAAAACAAAGAC+AGG | + | tig0027382:6908-6927 | None:intergenic | 45.0% | |
! | CGATGATGAAGCTGATGATG+AGG | - | tig0027382:7218-7237 | Msa1433590:intron | 45.0% |
CTTCTAGCAGCGATTTCTGA+AGG | - | tig0027382:7440-7459 | Msa1433590:intron | 45.0% | |
TTGTTCGCAGGAAAAAGACG+AGG | - | tig0027382:7820-7839 | Msa1433590:intron | 45.0% | |
TCTGAAGAGGATGACGAAGA+GGG | - | tig0027382:7848-7867 | Msa1433590:intron | 45.0% | |
AGACCATGGCCTTTCTTTCA+GGG | - | tig0027382:7961-7980 | Msa1433590:CDS | 45.0% | |
!! | GACTATAGTTAACTTGCGGG+AGG | + | tig0027382:8230-8249 | None:intergenic | 45.0% |
GGGTGGAATGAAAACGCGAA+AGG | + | tig0027382:3492-3511 | None:intergenic | 50.0% | |
TGTGTGAGTGAAGATTGCCG+CGG | + | tig0027382:3536-3555 | None:intergenic | 50.0% | |
GGCAATCTTCACTCACACAG+AGG | - | tig0027382:3537-3556 | Msa1433590:three_prime_UTR | 50.0% | |
! | GGAAGCCGGTTTACGATAAG+CGG | - | tig0027382:3872-3891 | Msa1433590:three_prime_UTR | 50.0% |
GTAGTTCACTGAGGGTAGGA+TGG | + | tig0027382:4066-4085 | None:intergenic | 50.0% | |
!!! | GTAGTAGTTTTGACCCAGCG+TGG | - | tig0027382:4231-4250 | Msa1433590:intron | 50.0% |
! | CTGTTTCGTTTTGTCCACGC+TGG | + | tig0027382:4248-4267 | None:intergenic | 50.0% |
GAAGAGGGGGAAGAGAAGAA+GGG | + | tig0027382:4568-4587 | None:intergenic | 50.0% | |
GAAGAACAAATGGGGAGGGT+TGG | - | tig0027382:5269-5288 | Msa1433590:intron | 50.0% | |
AAAGGCCTCCTGTTGATGTC+AGG | - | tig0027382:5546-5565 | Msa1433590:intron | 50.0% | |
ACCAACCTGACATCAACAGG+AGG | + | tig0027382:5554-5573 | None:intergenic | 50.0% | |
GACACCAACCTGACATCAAC+AGG | + | tig0027382:5557-5576 | None:intergenic | 50.0% | |
CATGGACAAAGCTGGAGAGT+GGG | + | tig0027382:5714-5733 | None:intergenic | 50.0% | |
TCATGGACAAAGCTGGAGAG+TGG | + | tig0027382:5715-5734 | None:intergenic | 50.0% | |
! | GTTGAGGTCTGGAACGAACA+GGG | + | tig0027382:6003-6022 | None:intergenic | 50.0% |
! | TGTTGAGGTCTGGAACGAAC+AGG | + | tig0027382:6004-6023 | None:intergenic | 50.0% |
TAGCGGAGCTATTGTGTAGC+GGG | + | tig0027382:6135-6154 | None:intergenic | 50.0% | |
ACGGATGGCCCCATATTTGA+CGG | - | tig0027382:6238-6257 | Msa1433590:intron | 50.0% | |
! | GATTGGAGGTTTGGGATCAG+GGG | - | tig0027382:6309-6328 | Msa1433590:CDS | 50.0% |
!! | CTCTTCCATCGACTCCTGAA+AGG | + | tig0027382:6482-6501 | None:intergenic | 50.0% |
TATGGCTGACATTCACGACG+AGG | - | tig0027382:6833-6852 | Msa1433590:intron | 50.0% | |
TCATCGGCATCCTCTTCATC+AGG | + | tig0027382:7204-7223 | None:intergenic | 50.0% | |
TGCGGTGATACTGTGCATAC+TGG | - | tig0027382:7378-7397 | Msa1433590:intron | 50.0% | |
! | CTCTGAAGAGGATGACGAAG+AGG | - | tig0027382:7847-7866 | Msa1433590:intron | 50.0% |
! | TGACGAAGAGGGTGATGATG+AGG | - | tig0027382:7859-7878 | Msa1433590:intron | 50.0% |
! | GAAGAGGGTGATGATGAGGA+AGG | - | tig0027382:7863-7882 | Msa1433590:intron | 50.0% |
CAGACCATGGCCTTTCTTTC+AGG | - | tig0027382:7960-7979 | Msa1433590:CDS | 50.0% | |
ATGCCCTGAAAGAAAGGCCA+TGG | + | tig0027382:7967-7986 | None:intergenic | 50.0% | |
GAGCTACACAAGCCAGTTAG+TGG | - | tig0027382:8006-8025 | Msa1433590:CDS | 50.0% | |
ATGGTCGGAGAACCACTAAC+TGG | + | tig0027382:8021-8040 | None:intergenic | 50.0% | |
ACACAGAGGCGAACCGAAGA+TGG | - | tig0027382:3551-3570 | Msa1433590:three_prime_UTR | 55.0% | |
AGAGGCGAACCGAAGATGGT+TGG | - | tig0027382:3555-3574 | Msa1433590:three_prime_UTR | 55.0% | |
GGAAGAGGGGGAAGAGAAGA+AGG | + | tig0027382:4569-4588 | None:intergenic | 55.0% | |
ACTTGGGGGTTGCACAAGAC+AGG | - | tig0027382:5173-5192 | Msa1433590:intron | 55.0% | |
CTTGGGGGTTGCACAAGACA+GGG | - | tig0027382:5174-5193 | Msa1433590:intron | 55.0% | |
GCCTCCTGTTGATGTCAGGT+TGG | - | tig0027382:5550-5569 | Msa1433590:intron | 55.0% | |
CGGATGGCCCCATATTTGAC+GGG | - | tig0027382:6239-6258 | Msa1433590:intron | 55.0% | |
ATGGCCCCATATTTGACGGG+TGG | - | tig0027382:6242-6261 | Msa1433590:intron | 55.0% | |
! | GAGGTTTGGGATCAGGGGTA+TGG | - | tig0027382:6314-6333 | Msa1433590:CDS | 55.0% |
! | GTTTGGGATCAGGGGTATGG+TGG | - | tig0027382:6317-6336 | Msa1433590:CDS | 55.0% |
AGAGTAATGCACAGCCAGCC+AGG | + | tig0027382:6515-6534 | None:intergenic | 55.0% | |
ACAGGAGGAGCCTGATGAAG+AGG | - | tig0027382:7191-7210 | Msa1433590:intron | 55.0% | |
! | AGACGAGGACGACTCTGAAG+AGG | - | tig0027382:7835-7854 | Msa1433590:intron | 55.0% |
! | GCTTTTGGGCGTGCAGACCA+TGG | - | tig0027382:7947-7966 | Msa1433590:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0027382 | gene | 3475 | 8374 | 3475 | ID=Msa1433590;Name=Msa1433590 |
tig0027382 | mRNA | 3475 | 8374 | 3475 | ID=Msa1433590-mRNA-1;Parent=Msa1433590;Name=Msa1433590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=95|1|1|1|1|1|10|482|265 |
tig0027382 | exon | 3475 | 4019 | 3475 | ID=Msa1433590-mRNA-1:exon:8733;Parent=Msa1433590-mRNA-1 |
tig0027382 | exon | 4574 | 4654 | 4574 | ID=Msa1433590-mRNA-1:exon:8732;Parent=Msa1433590-mRNA-1 |
tig0027382 | exon | 4777 | 4833 | 4777 | ID=Msa1433590-mRNA-1:exon:8731;Parent=Msa1433590-mRNA-1 |
tig0027382 | exon | 4995 | 5055 | 4995 | ID=Msa1433590-mRNA-1:exon:8730;Parent=Msa1433590-mRNA-1 |
tig0027382 | exon | 6282 | 6343 | 6282 | ID=Msa1433590-mRNA-1:exon:8729;Parent=Msa1433590-mRNA-1 |
tig0027382 | exon | 7007 | 7120 | 7007 | ID=Msa1433590-mRNA-1:exon:8728;Parent=Msa1433590-mRNA-1 |
tig0027382 | exon | 7293 | 7364 | 7293 | ID=Msa1433590-mRNA-1:exon:8727;Parent=Msa1433590-mRNA-1 |
tig0027382 | exon | 7744 | 7794 | 7744 | ID=Msa1433590-mRNA-1:exon:8726;Parent=Msa1433590-mRNA-1 |
tig0027382 | exon | 7913 | 8035 | 7913 | ID=Msa1433590-mRNA-1:exon:8725;Parent=Msa1433590-mRNA-1 |
tig0027382 | exon | 8166 | 8374 | 8166 | ID=Msa1433590-mRNA-1:exon:8724;Parent=Msa1433590-mRNA-1 |
tig0027382 | five_prime_UTR | 8280 | 8374 | 8280 | ID=Msa1433590-mRNA-1:five_prime_utr;Parent=Msa1433590-mRNA-1 |
tig0027382 | CDS | 8166 | 8279 | 8166 | ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1 |
tig0027382 | CDS | 7913 | 8035 | 7913 | ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1 |
tig0027382 | CDS | 7744 | 7794 | 7744 | ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1 |
tig0027382 | CDS | 7293 | 7364 | 7293 | ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1 |
tig0027382 | CDS | 7007 | 7120 | 7007 | ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1 |
tig0027382 | CDS | 6282 | 6343 | 6282 | ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1 |
tig0027382 | CDS | 4995 | 5055 | 4995 | ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1 |
tig0027382 | CDS | 4777 | 4833 | 4777 | ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1 |
tig0027382 | CDS | 4574 | 4654 | 4574 | ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1 |
tig0027382 | CDS | 3957 | 4019 | 3957 | ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1 |
tig0027382 | three_prime_UTR | 3475 | 3956 | 3475 | ID=Msa1433590-mRNA-1:three_prime_utr;Parent=Msa1433590-mRNA-1 |
Gene Sequence |
Protein sequence |