AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1433590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1433590 MtrunA17_Chr4g0060621 99.248 266 1 1 1 265 1 266 0.0 520
Msa1433590 MtrunA17_Chr3g0092521 78.281 221 45 1 1 218 1 221 9.42e-127 360
Msa1433590 MtrunA17_Chr4g0064221 62.868 272 81 5 5 265 105 367 7.19e-107 314
Msa1433590 MtrunA17_Chr6g0487861 48.810 84 42 1 57 139 2 85 4.63e-25 95.1
Msa1433590 MtrunA17_Chr6g0487691 48.810 84 42 1 57 139 2 85 4.63e-25 95.1
Msa1433590 MtrunA17_Chr6g0487501 39.496 119 59 2 100 206 38 155 3.06e-20 84.7
Msa1433590 MtrunA17_Chr2g0299501 27.957 186 103 4 5 160 30 214 1.01e-12 67.4
Msa1433590 MtrunA17_Chr2g0330141 27.568 185 102 4 7 160 30 213 3.50e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1433590 AT1G18800.1 72.851 221 57 3 1 218 1 221 5.40e-112 323
Msa1433590 AT1G74560.1 73.171 205 53 2 17 219 22 226 4.57e-108 313
Msa1433590 AT1G74560.3 73.333 195 50 2 17 209 22 216 3.01e-102 298
Msa1433590 AT2G19480.2 26.380 163 91 3 26 160 55 216 9.78e-11 62.0
Msa1433590 AT2G19480.1 26.380 163 91 3 26 160 55 216 9.93e-11 62.0

Find 98 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGACCATGGCCTTTCTTTC+AGG 0.071837 tig0027382:-3867 Msa1433590:three_prime_UTR
GATCTTTATGCATAACTTTC+TGG 0.102315 tig0027382:-3571 Msa1433590:three_prime_UTR
TCAAATCTATTCCTGATTTC+TGG 0.142000 tig0027382:-7922 Msa1433590:CDS
GGTATATTAGCTTTCTCTTT+TGG 0.151187 tig0027382:-3717 Msa1433590:three_prime_UTR
TTCGGTGAGTTTCTGCTTCT+TGG 0.176469 tig0027382:+8241 None:intergenic
TTGAGTATGTATTAGGCTTT+TGG 0.206492 tig0027382:-3895 Msa1433590:three_prime_UTR
TTGGGTATCTTAGCATAAAA+AGG 0.247822 tig0027382:-3647 Msa1433590:three_prime_UTR
ACAGGGTAATTGATAAATTA+TGG 0.281625 tig0027382:+3790 None:intergenic
TGCATGATTATAATTTATAT+TGG 0.287040 tig0027382:-3533 Msa1433590:three_prime_UTR
AATTAATCAAGGATGATTTA+TGG 0.308424 tig0027382:-4804 Msa1433590:CDS
TCTTGAGGTTGAAGATAATA+AGG 0.335371 tig0027382:-7322 Msa1433590:CDS
TGAAAACGCGAAAGGGTGTT+AGG 0.338957 tig0027382:+8346 None:intergenic
GATAATAAGGATGTCAAATC+TGG 0.344818 tig0027382:-7309 Msa1433590:CDS
TACTGCATTTACTAGCCGTT+TGG 0.353047 tig0027382:-3666 Msa1433590:three_prime_UTR
AGTTCAGCATCAACTTCTTC+GGG 0.365326 tig0027382:+8215 None:intergenic
CTTCTCATGATTGTCGCCAT+TGG 0.369583 tig0027382:+6314 None:intergenic
GAGTTCAGCATCAACTTCTT+CGG 0.373422 tig0027382:+8214 None:intergenic
ATGAATGCAGTTTCCTTAGT+TGG 0.378489 tig0027382:-5043 Msa1433590:intron
TTCTCATGATTGTCGCCATT+GGG 0.394389 tig0027382:+6315 None:intergenic
AGGCAATTGAAAATGCATTA+TGG 0.398971 tig0027382:-3944 Msa1433590:exon
TCCGACTATAGTTAACTTGC+GGG 0.399219 tig0027382:+3597 None:intergenic
ACTGCATTTACTAGCCGTTT+GGG 0.400007 tig0027382:-3665 Msa1433590:three_prime_UTR
TGAATCCTCAAAATAGGGAT+TGG 0.404769 tig0027382:+7088 None:intergenic
AGACCATGGCCTTTCTTTCA+GGG 0.412109 tig0027382:-3866 Msa1433590:three_prime_UTR
GAATCCTCAAAATAGGGATT+GGG 0.412238 tig0027382:+7089 None:intergenic
GTTCTGTCTCCAACCATCTT+CGG 0.412928 tig0027382:+8263 None:intergenic
GACACCAACCTGACATCAAC+AGG 0.420723 tig0027382:+6273 None:intergenic
TCTCTGTTGTTCCTTCTTCA+CGG 0.428176 tig0027382:+7042 None:intergenic
ACTAGAAGAAATTACTTGAC+AGG 0.444435 tig0027382:+3772 None:intergenic
AAGTTGATGAAGAAGAGAAA+AGG 0.450896 tig0027382:+8317 None:intergenic
AGATATTGATATTTGCCATC+GGG 0.452656 tig0027382:-3489 Msa1433590:three_prime_UTR
ACAGCATTCAACCAGAAATC+AGG 0.453818 tig0027382:+7911 None:intergenic
TCATCGGCATCCTCTTCATC+AGG 0.453926 tig0027382:+4626 None:intergenic
ATGGTCGGAGAACCACTAAC+TGG 0.454059 tig0027382:+3809 None:intergenic
TCGTTCCGCTTATCGTAAAC+CGG 0.454701 tig0027382:+7950 None:intergenic
GAGTTAATGCCCTGAAAGAA+AGG 0.464958 tig0027382:+3857 None:intergenic
ATGAGAAGAAAGGGAACAAA+AGG 0.469606 tig0027382:-6299 Msa1433590:CDS
CTGTGAGCAGAAAGATGATA+TGG 0.473510 tig0027382:-5012 Msa1433590:CDS
AGTTGATGAAGAAGAGAAAA+GGG 0.474749 tig0027382:+8318 None:intergenic
ATCTAAATTCTAACAGAGGA+TGG 0.479524 tig0027382:+3508 None:intergenic
GGCGACAATCATGAGAAGAA+AGG 0.484157 tig0027382:-6309 Msa1433590:CDS
AAAGGCCTCCTGTTGATGTC+AGG 0.487205 tig0027382:-6281 Msa1433590:intron
AGCAGAAGTATAATGAGATT+AGG 0.487313 tig0027382:-7976 Msa1433590:CDS
CACAGTCACAAAACCAACTA+AGG 0.487948 tig0027382:+5030 None:intergenic
GCAGCTTGCAGAATTAATCA+AGG 0.516175 tig0027382:-4815 Msa1433590:intron
TCTAAATTCTAACAGAGGAT+GGG 0.518657 tig0027382:+3509 None:intergenic
GTATAATGAGATTAGGAAGC+CGG 0.518765 tig0027382:-7969 Msa1433590:CDS
TGTTGTTCCTTCTTCACGGA+AGG 0.521205 tig0027382:+7046 None:intergenic
ACACAGAGGCGAACCGAAGA+TGG 0.523143 tig0027382:-8276 Msa1433590:exon
GAGCTACACAAGCCAGTTAG+TGG 0.523204 tig0027382:-3821 Msa1433590:three_prime_UTR
GCGACAATCATGAGAAGAAA+GGG 0.529007 tig0027382:-6308 Msa1433590:CDS
TAATGATGAAGCGAGTGATA+AGG 0.530659 tig0027382:-8011 Msa1433590:CDS
TGAAGCTGATGATGAGGTAA+TGG 0.532222 tig0027382:-4603 Msa1433590:CDS
GAAAACGCGAAAGGGTGTTA+GGG 0.538787 tig0027382:+8347 None:intergenic
TAGATATTGATATTTGCCAT+CGG 0.539028 tig0027382:-3490 Msa1433590:three_prime_UTR
GATCCAAGATGACCTCGAAA+AGG 0.540267 tig0027382:-8165 Msa1433590:intron
TATCACTAAAATTGCACGAT+GGG 0.540851 tig0027382:+3745 None:intergenic
CTCATTCAGTAGTTCACTGA+GGG 0.542426 tig0027382:+7756 None:intergenic
TTCCGACTATAGTTAACTTG+CGG 0.542706 tig0027382:+3596 None:intergenic
TGACGAAGAGGGTGATGATG+AGG 0.543527 tig0027382:-3968 Msa1433590:CDS
CTCTTCTTCATCAACTTCCG+CGG 0.546448 tig0027382:-8311 Msa1433590:five_prime_UTR
CTAAATTCTAACAGAGGATG+GGG 0.550552 tig0027382:+3510 None:intergenic
CTCATCATCAGCTTCATCAT+CGG 0.555556 tig0027382:+4610 None:intergenic
CAAGTATTTGAGTTCTCTTG+AGG 0.559002 tig0027382:-7337 Msa1433590:CDS
GATCTCTTGCAATTTCTCGA+TGG 0.566477 tig0027382:+8184 None:intergenic
TCCCGCAAGTTAACTATAGT+CGG 0.568159 tig0027382:-3598 Msa1433590:three_prime_UTR
GTAGTTCACTGAGGGTAGGA+TGG 0.569898 tig0027382:+7764 None:intergenic
CCTCAGTGAACTACTGAATG+AGG 0.570986 tig0027382:-7755 Msa1433590:CDS
ACAGGAGGAGCCTGATGAAG+AGG 0.571562 tig0027382:-4636 Msa1433590:intron
GGTGGAATGAAAACGCGAAA+GGG 0.576072 tig0027382:+8339 None:intergenic
CAAGTTAACTATAGTCGGAA+AGG 0.579049 tig0027382:-3593 Msa1433590:three_prime_UTR
AGAGGCGAACCGAAGATGGT+TGG 0.579592 tig0027382:-8272 Msa1433590:exon
CATAAAATGGAAAGAAGGCA+AGG 0.587844 tig0027382:-7006 Msa1433590:intron
TTTATGCTAAGATACCCAAA+CGG 0.589342 tig0027382:+3651 None:intergenic
ATGCCCTGAAAGAAAGGCCA+TGG 0.592269 tig0027382:+3863 None:intergenic
TGATGAAGAAGAGAAAAGGG+TGG 0.594767 tig0027382:+8321 None:intergenic
CTTGCAATTTCTCGATGGAG+AGG 0.599246 tig0027382:+8189 None:intergenic
AGACGAGGACGACTCTGAAG+AGG 0.603159 tig0027382:-3992 Msa1433590:CDS
CTAGAAGAAATTACTTGACA+GGG 0.603479 tig0027382:+3773 None:intergenic
GGGTGGAATGAAAACGCGAA+AGG 0.604662 tig0027382:+8338 None:intergenic
GGAAGCCGGTTTACGATAAG+CGG 0.605546 tig0027382:-7955 Msa1433590:CDS
CATTAACTCATGTCAGCAAG+TGG 0.610410 tig0027382:-3843 Msa1433590:three_prime_UTR
GGTAATTGATAAATTATGGT+CGG 0.611413 tig0027382:+3794 None:intergenic
CTCTGAAGAGGATGACGAAG+AGG 0.619244 tig0027382:-3980 Msa1433590:CDS
TCTGAAGAGGATGACGAAGA+GGG 0.630726 tig0027382:-3979 Msa1433590:CDS
TTCAGTAGTTCACTGAGGGT+AGG 0.637147 tig0027382:+7760 None:intergenic
GAAGAGGGTGATGATGAGGA+AGG 0.646490 tig0027382:-3964 Msa1433590:CDS
GACTATAGTTAACTTGCGGG+AGG 0.653498 tig0027382:+3600 None:intergenic
CAATATCTAAATTCTAACAG+AGG 0.654569 tig0027382:+3504 None:intergenic
TACATGTAGGGAATACCCAA+TGG 0.673035 tig0027382:-6330 Msa1433590:intron
CGATGATGAAGCTGATGATG+AGG 0.673202 tig0027382:-4609 Msa1433590:CDS
ACACTGTTGAAATAAATGAG+TGG 0.676235 tig0027382:+4775 None:intergenic
CCTCATTCAGTAGTTCACTG+AGG 0.684849 tig0027382:+7755 None:intergenic
ACCAACCTGACATCAACAGG+AGG 0.699036 tig0027382:+6276 None:intergenic
GTATCACTAAAATTGCACGA+TGG 0.702616 tig0027382:+3744 None:intergenic
GGCAATCTTCACTCACACAG+AGG 0.721891 tig0027382:-8290 Msa1433590:five_prime_UTR
TATGGCTGACATTCACGACG+AGG 0.776284 tig0027382:-4994 Msa1433590:intron
TGTGTGAGTGAAGATTGCCG+CGG 0.840253 tig0027382:+8294 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATATATGATAGTTTA+AGG - tig0027382:5296-5315 Msa1433590:intron 10.0%
!! TTAAATATATGATAGTTTAA+GGG - tig0027382:5297-5316 Msa1433590:intron 10.0%
!! AAATGTTAATATAAAGAATA+TGG - tig0027382:7512-7531 Msa1433590:intron 10.0%
!!! ATTGTGTTTTAATAATTATG+TGG - tig0027382:3766-3785 Msa1433590:three_prime_UTR 15.0%
!! ATATCTATCAAATAAAGAAT+TGG + tig0027382:4469-4488 None:intergenic 15.0%
!! AAAAATTATAAATGCTGATA+GGG + tig0027382:4873-4892 None:intergenic 15.0%
!! TAAAAATTATAAATGCTGAT+AGG + tig0027382:4874-4893 None:intergenic 15.0%
!! TCAACAACAAAAAATATATA+AGG + tig0027382:5373-5392 None:intergenic 15.0%
!!! CATTTTGTATAAACATATAA+AGG + tig0027382:5676-5695 None:intergenic 15.0%
!!! AAATGTTTTTTTACATGAAA+GGG + tig0027382:6545-6564 None:intergenic 15.0%
!!! AAAATGTTTTTTTACATGAA+AGG + tig0027382:6546-6565 None:intergenic 15.0%
!!! TTCACATTATTTATTGTTTT+CGG + tig0027382:7617-7636 None:intergenic 15.0%
!! TGTTTGTCATTAATTTAAAA+TGG + tig0027382:7766-7785 None:intergenic 15.0%
!! TGCATGATTATAATTTATAT+TGG - tig0027382:8294-8313 Msa1433590:five_prime_UTR 15.0%
!! GCTTCAATTGAATAAAAAAA+CGG + tig0027382:3690-3709 None:intergenic 20.0%
!! AACACAATTCAAATCAAATT+AGG + tig0027382:3754-3773 None:intergenic 20.0%
!!! TGAAGTGATTTTCAAATTTT+CGG + tig0027382:4590-4609 None:intergenic 20.0%
!! AAAATTATAAATGCTGATAG+GGG + tig0027382:4872-4891 None:intergenic 20.0%
!!! ATAAATCATAAGTTTCAAGT+AGG - tig0027382:5041-5060 Msa1433590:intron 20.0%
!!! TAAATCATAAGTTTCAAGTA+GGG - tig0027382:5042-5061 Msa1433590:intron 20.0%
!! TGATTAGAAATACAATCATT+AGG - tig0027382:5226-5245 Msa1433590:intron 20.0%
!!! AATCCTTTTAAAGTAGATTT+AGG + tig0027382:5948-5967 None:intergenic 20.0%
!! ATTTGCAAATGAAAATACTT+TGG + tig0027382:6168-6187 None:intergenic 20.0%
!! TTTGAGAAATATGTTGTTAA+AGG - tig0027382:6696-6715 Msa1433590:intron 20.0%
!! AGTGAATTGAATATTATACA+AGG + tig0027382:6987-7006 None:intergenic 20.0%
!! AATTAATCAAGGATGATTTA+TGG - tig0027382:7023-7042 Msa1433590:CDS 20.0%
!! AAAATGACAAATAATGCATT+TGG + tig0027382:7118-7137 None:intergenic 20.0%
!!! TCTATTTTTTCCAAGAAAAA+CGG + tig0027382:7255-7274 None:intergenic 20.0%
!! TATTGCTCATAATAATTGTT+TGG - tig0027382:7299-7318 Msa1433590:CDS 20.0%
!! TGAAAATTATGAATTCAGTA+TGG + tig0027382:7344-7363 None:intergenic 20.0%
!! TTAATCCTAAACATTGTTAA+AGG - tig0027382:7707-7726 Msa1433590:intron 20.0%
!! CTCAAACCAAAAAAATAAAA+AGG + tig0027382:7917-7936 None:intergenic 20.0%
! ATTATTTGATCCACCAAATT+AGG - tig0027382:3724-3743 Msa1433590:three_prime_UTR 25.0%
! CAAATTAGGTTAACCTAATT+TGG + tig0027382:3738-3757 None:intergenic 25.0%
!!! TTCTGTGGAAGTATTTTTTA+AGG - tig0027382:4209-4228 Msa1433590:intron 25.0%
! CATGAAAGAACATAATAAGT+GGG + tig0027382:4369-4388 None:intergenic 25.0%
! ACATGAAAGAACATAATAAG+TGG + tig0027382:4370-4389 None:intergenic 25.0%
!! ATTTTCAAATTTTCGGAAGA+GGG + tig0027382:4583-4602 None:intergenic 25.0%
! CTTCATTGCAATGAAAAATA+TGG - tig0027382:4605-4624 Msa1433590:CDS 25.0%
!!! AGTTTTGAATCCTCAAAATA+GGG + tig0027382:4747-4766 None:intergenic 25.0%
!!! AAGTTTTGAATCCTCAAAAT+AGG + tig0027382:4748-4767 None:intergenic 25.0%
! GATTTGAAAAAGTTTCACAT+TGG + tig0027382:4918-4937 None:intergenic 25.0%
!!! TTTTTCAAATCTACATGACA+TGG - tig0027382:4927-4946 Msa1433590:intron 25.0%
!!! TTAAACTTGCTAAAAGTAGA+GGG - tig0027382:4956-4975 Msa1433590:intron 25.0%
! AATCTGTAAATCTCACAATT+TGG + tig0027382:5333-5352 None:intergenic 25.0%
! TTGTGAGATTTACAGATTAA+TGG - tig0027382:5335-5354 Msa1433590:intron 25.0%
! CTGTCGAAAAAAAAAAAAGA+AGG + tig0027382:5433-5452 None:intergenic 25.0%
!!! TCTTTTTTTTTTTTCGACAG+AGG - tig0027382:5433-5452 Msa1433590:intron 25.0%
! GTTAGTAAAATACAACAACA+AGG + tig0027382:5465-5484 None:intergenic 25.0%
! GTTTATACAAAATGAACTTC+TGG - tig0027382:5682-5701 Msa1433590:intron 25.0%
! TTTATTGATGTCCTAATTGA+CGG + tig0027382:5764-5783 None:intergenic 25.0%
! TCAATTAGGACATCAATAAA+GGG - tig0027382:5764-5783 Msa1433590:intron 25.0%
! AAAAAAGGAAAAGAGGAATT+TGG + tig0027382:5824-5843 None:intergenic 25.0%
! ACTGAAAAGAAGAAGAAAAA+AGG + tig0027382:5839-5858 None:intergenic 25.0%
! ATGCCTAAATCTACTTTAAA+AGG - tig0027382:5942-5961 Msa1433590:intron 25.0%
! ACTTTGGTATTGTTAAATAG+CGG + tig0027382:6152-6171 None:intergenic 25.0%
! TTCATTTGCAAATAATTGAC+TGG - tig0027382:6175-6194 Msa1433590:intron 25.0%
! ACAATTGATCAAATTTCTCT+TGG + tig0027382:6283-6302 None:intergenic 25.0%
! TGATCAATTGTATACTTGAT+TGG - tig0027382:6292-6311 Msa1433590:CDS 25.0%
!!! TTTTTTACATGAAAGGGTTT+TGG + tig0027382:6539-6558 None:intergenic 25.0%
!! GTTTTTCTTGGAAAAAATAG+AGG - tig0027382:7254-7273 Msa1433590:intron 25.0%
!! AGGTGATTAACAAAAGTTTT+TGG - tig0027382:7274-7293 Msa1433590:intron 25.0%
!! GGTGATTAACAAAAGTTTTT+GGG - tig0027382:7275-7294 Msa1433590:intron 25.0%
! TTCAATTAAAGAGTTTGATG+CGG - tig0027382:7360-7379 Msa1433590:intron 25.0%
! AAGAATATGGAACTATAAGT+TGG - tig0027382:7525-7544 Msa1433590:intron 25.0%
! TCATTCTAACTTAAAGCTTT+AGG + tig0027382:7584-7603 None:intergenic 25.0%
! TGATAACCTCAAAAAAAACT+TGG - tig0027382:7660-7679 Msa1433590:intron 25.0%
! TAGATCCTTTAACAATGTTT+AGG + tig0027382:7715-7734 None:intergenic 25.0%
! AAATAATATTTCTTGTTCGC+AGG - tig0027382:7808-7827 Msa1433590:intron 25.0%
!!! GTGTGACCTTTTTATTTTTT+TGG - tig0027382:7908-7927 Msa1433590:intron 25.0%
!!! TTTTGGTTTGAGTATGTATT+AGG - tig0027382:7925-7944 Msa1433590:CDS 25.0%
! GGTAATTGATAAATTATGGT+CGG + tig0027382:8036-8055 None:intergenic 25.0%
! ACAGGGTAATTGATAAATTA+TGG + tig0027382:8040-8059 None:intergenic 25.0%
!!! GTATATTAGCTTTCTCTTTT+GGG - tig0027382:8111-8130 Msa1433590:intron 25.0%
! CAATATCTAAATTCTAACAG+AGG + tig0027382:8326-8345 None:intergenic 25.0%
! TAGATATTGATATTTGCCAT+CGG - tig0027382:8337-8356 Msa1433590:five_prime_UTR 25.0%
!! AGTTGATGAAGAAGAGAAAA+GGG + tig0027382:3512-3531 None:intergenic 30.0%
!! AAGTTGATGAAGAAGAGAAA+AGG + tig0027382:3513-3532 None:intergenic 30.0%
ATTAGGTTAACCTAATTTGG+TGG + tig0027382:3737-3756 None:intergenic 30.0%
! AGCAGAAGTATAATGAGATT+AGG - tig0027382:3851-3870 Msa1433590:three_prime_UTR 30.0%
TCAAATCTATTCCTGATTTC+TGG - tig0027382:3905-3924 Msa1433590:three_prime_UTR 30.0%
!! TTGGTTTGTTTGTATGATTC+TGG - tig0027382:4171-4190 Msa1433590:intron 30.0%
! GTATGATTCTGGAAATTACT+CGG - tig0027382:4182-4201 Msa1433590:intron 30.0%
! AAAACGAAACAGAATGGTTT+TGG - tig0027382:4256-4275 Msa1433590:intron 30.0%
TACTTTGATTCCATGGAAAA+TGG + tig0027382:4287-4306 None:intergenic 30.0%
GTGATATTACTTTGATTCCA+TGG + tig0027382:4294-4313 None:intergenic 30.0%
!!! GGTTTTGTTCCTTTGATTAA+CGG - tig0027382:4417-4436 Msa1433590:intron 30.0%
TCTTGAGGTTGAAGATAATA+AGG - tig0027382:4505-4524 Msa1433590:intron 30.0%
GATAATAAGGATGTCAAATC+TGG - tig0027382:4518-4537 Msa1433590:intron 30.0%
! TTTTCAAATTTTCGGAAGAG+GGG + tig0027382:4582-4601 None:intergenic 30.0%
! GATTTTCAAATTTTCGGAAG+AGG + tig0027382:4584-4603 None:intergenic 30.0%
GTCAGTAGAAAATCAACATT+TGG + tig0027382:4678-4697 None:intergenic 30.0%
TCTGAACATGAAATGATTAC+TGG + tig0027382:4710-4729 None:intergenic 30.0%
! TTGCCTTCTTTCCATTTTAT+GGG + tig0027382:4822-4841 None:intergenic 30.0%
!! CTTAAACTTGCTAAAAGTAG+AGG - tig0027382:4955-4974 Msa1433590:intron 30.0%
TGAGTGATACTTTACTATTG+CGG + tig0027382:5094-5113 None:intergenic 30.0%
AAAGTTACCCCACAATTAAA+AGG - tig0027382:5125-5144 Msa1433590:intron 30.0%
!! ATTACAGGCCTTTTAATTGT+GGG + tig0027382:5136-5155 None:intergenic 30.0%
ACAGATTCATACAACATTAC+AGG + tig0027382:5151-5170 None:intergenic 30.0%
TTGTATGAATCTGTTCACTT+GGG - tig0027382:5157-5176 Msa1433590:intron 30.0%
ACATAATCCTGATACATGTA+GGG - tig0027382:5485-5504 Msa1433590:intron 30.0%
ACTAATATGCATCATGAACA+TGG + tig0027382:5633-5652 None:intergenic 30.0%
! TATTAGTTTCCACTTGTTCT+TGG - tig0027382:5646-5665 Msa1433590:intron 30.0%
GTCAATTAGGACATCAATAA+AGG - tig0027382:5763-5782 Msa1433590:intron 30.0%
AAACAAGCATCACTAATCAA+GGG + tig0027382:5790-5809 None:intergenic 30.0%
AAAACAAGCATCACTAATCA+AGG + tig0027382:5791-5810 None:intergenic 30.0%
! TTGATTAGTGATGCTTGTTT+TGG - tig0027382:5790-5809 Msa1433590:intron 30.0%
GAAGAAGAAAAAAGGAAAAG+AGG + tig0027382:5831-5850 None:intergenic 30.0%
TTTATTCCAATATGACCAAG+CGG - tig0027382:5863-5882 Msa1433590:intron 30.0%
CATAACACAATACAATACAG+AGG - tig0027382:5919-5938 Msa1433590:intron 30.0%
TATCTCCGTCAATTATTTGA+CGG - tig0027382:6219-6238 Msa1433590:intron 30.0%
TCAATTGTATACTTGATTGG+AGG - tig0027382:6295-6314 Msa1433590:CDS 30.0%
!!! TGGTACCAATTTTTTCCAAT+AGG - tig0027382:6353-6372 Msa1433590:intron 30.0%
!! CAAATATGAAGGTGGTTTTA+AGG + tig0027382:6634-6653 None:intergenic 30.0%
TAAAACCACCTTCATATTTG+AGG - tig0027382:6634-6653 Msa1433590:intron 30.0%
TCATTAGCACAAGAAATCAA+AGG + tig0027382:6768-6787 None:intergenic 30.0%
ACACTGTTGAAATAAATGAG+TGG + tig0027382:7055-7074 None:intergenic 30.0%
AGCTACAGTTAGAAACATAA+CGG + tig0027382:7159-7178 None:intergenic 30.0%
GTAGCTGATTGTAATATAAC+AGG - tig0027382:7173-7192 Msa1433590:intron 30.0%
AAAAAGTTATGCATTCAGCA+TGG + tig0027382:7406-7425 None:intergenic 30.0%
TGAAAATTAAAGTTCGGTTC+AGG + tig0027382:7467-7486 None:intergenic 30.0%
CGCGAATGAAAATTAAAGTT+CGG + tig0027382:7473-7492 None:intergenic 30.0%
! TTAATTTTCATTCGCGATCT+AGG - tig0027382:7477-7496 Msa1433590:intron 30.0%
!!! AACTTGCCAAGTTTTTTTTG+AGG + tig0027382:7669-7688 None:intergenic 30.0%
ATTAATGACAAACACAGCTT+TGG - tig0027382:7772-7791 Msa1433590:CDS 30.0%
AGGCAATTGAAAATGCATTA+TGG - tig0027382:7883-7902 Msa1433590:intron 30.0%
! TTGAGTATGTATTAGGCTTT+TGG - tig0027382:7932-7951 Msa1433590:CDS 30.0%
! TGAGTATGTATTAGGCTTTT+GGG - tig0027382:7933-7952 Msa1433590:CDS 30.0%
CTAGAAGAAATTACTTGACA+GGG + tig0027382:8057-8076 None:intergenic 30.0%
ACTAGAAGAAATTACTTGAC+AGG + tig0027382:8058-8077 None:intergenic 30.0%
TATCACTAAAATTGCACGAT+GGG + tig0027382:8085-8104 None:intergenic 30.0%
!! TGCAATTTTAGTGATACTCA+TGG - tig0027382:8089-8108 Msa1433590:intron 30.0%
!!! GGTATATTAGCTTTCTCTTT+TGG - tig0027382:8110-8129 Msa1433590:intron 30.0%
TTTATGCTAAGATACCCAAA+CGG + tig0027382:8179-8198 None:intergenic 30.0%
TTGGGTATCTTAGCATAAAA+AGG - tig0027382:8180-8199 Msa1433590:CDS 30.0%
GATCTTTATGCATAACTTTC+TGG - tig0027382:8256-8275 Msa1433590:CDS 30.0%
TCTAAATTCTAACAGAGGAT+GGG + tig0027382:8321-8340 None:intergenic 30.0%
ATCTAAATTCTAACAGAGGA+TGG + tig0027382:8322-8341 None:intergenic 30.0%
AGATATTGATATTTGCCATC+GGG - tig0027382:8338-8357 Msa1433590:five_prime_UTR 30.0%
! ATCAACTTCTTCGGGATTTT+CGG + tig0027382:3607-3626 None:intergenic 35.0%
! AAAAAAACGGTACCTTTTCG+AGG + tig0027382:3677-3696 None:intergenic 35.0%
TAATGATGAAGCGAGTGATA+AGG - tig0027382:3816-3835 Msa1433590:three_prime_UTR 35.0%
GTATAATGAGATTAGGAAGC+CGG - tig0027382:3858-3877 Msa1433590:three_prime_UTR 35.0%
! GTTTTCCATGTTGTTACGTT+TGG - tig0027382:4152-4171 Msa1433590:intron 35.0%
ACAAACCAAACGTAACAACA+TGG + tig0027382:4160-4179 None:intergenic 35.0%
!! TTTGGTTTCACCATTTTCCA+TGG - tig0027382:4274-4293 Msa1433590:intron 35.0%
AAACCTAGCAATTGTTCAGA+AGG + tig0027382:4402-4421 None:intergenic 35.0%
CTTTGATTAACGGTTCTGTT+GGG - tig0027382:4427-4446 Msa1433590:intron 35.0%
! CAAGTATTTGAGTTCTCTTG+AGG - tig0027382:4490-4509 Msa1433590:intron 35.0%
! TTTCAAATTTTCGGAAGAGG+GGG + tig0027382:4581-4600 None:intergenic 35.0%
GAATCCTCAAAATAGGGATT+GGG + tig0027382:4741-4760 None:intergenic 35.0%
TGAATCCTCAAAATAGGGAT+TGG + tig0027382:4742-4761 None:intergenic 35.0%
! TGCCTTCTTTCCATTTTATG+GGG + tig0027382:4821-4840 None:intergenic 35.0%
! CTTGCCTTCTTTCCATTTTA+TGG + tig0027382:4823-4842 None:intergenic 35.0%
CATAAAATGGAAAGAAGGCA+AGG - tig0027382:4821-4840 Msa1433590:intron 35.0%
! AAAGTATCACTCAAGTTTGC+AGG - tig0027382:5101-5120 Msa1433590:intron 35.0%
!! TTACAGGCCTTTTAATTGTG+GGG + tig0027382:5135-5154 None:intergenic 35.0%
!! CATTACAGGCCTTTTAATTG+TGG + tig0027382:5137-5156 None:intergenic 35.0%
GTTGTATGAATCTGTTCACT+TGG - tig0027382:5156-5175 Msa1433590:intron 35.0%
TGTATGAATCTGTTCACTTG+GGG - tig0027382:5158-5177 Msa1433590:intron 35.0%
! AAGACCTCTAGAAGAACAAA+TGG - tig0027382:5259-5278 Msa1433590:intron 35.0%
! AGACCTCTAGAAGAACAAAT+GGG - tig0027382:5260-5279 Msa1433590:intron 35.0%
GATAGTTTAAGGGAAACTGT+TGG - tig0027382:5307-5326 Msa1433590:intron 35.0%
TTGTTGAGTGATCCATATAG+TGG - tig0027382:5386-5405 Msa1433590:intron 35.0%
CACATAATCCTGATACATGT+AGG - tig0027382:5484-5503 Msa1433590:intron 35.0%
ATGAGAAGAAAGGGAACAAA+AGG - tig0027382:5528-5547 Msa1433590:intron 35.0%
! TTTGTTATCATGGACAAAGC+TGG + tig0027382:5722-5741 None:intergenic 35.0%
!! AACTCGTGAGTTTGTTATCA+TGG + tig0027382:5732-5751 None:intergenic 35.0%
TTATAATCCTGCCGTCAATT+AGG - tig0027382:5750-5769 Msa1433590:intron 35.0%
! ATCCCACAGTTTGATGATTA+CGG - tig0027382:5974-5993 Msa1433590:intron 35.0%
ATCCGTAATCATCAAACTGT+GGG + tig0027382:5979-5998 None:intergenic 35.0%
TATCCGTAATCATCAAACTG+TGG + tig0027382:5980-5999 None:intergenic 35.0%
! TAGTAATGGGAAAGTTGTTC+AGG + tig0027382:6028-6047 None:intergenic 35.0%
TCCATAGCAACGATAGTAAT+GGG + tig0027382:6041-6060 None:intergenic 35.0%
TTCCATAGCAACGATAGTAA+TGG + tig0027382:6042-6061 None:intergenic 35.0%
GCGAAAGAATCATATTGTAG+CGG - tig0027382:6086-6105 Msa1433590:intron 35.0%
TGACGGAGATAATTCTTCAA+AGG + tig0027382:6210-6229 None:intergenic 35.0%
TGTATACTTGATTGGAGGTT+TGG - tig0027382:6300-6319 Msa1433590:CDS 35.0%
GTATACTTGATTGGAGGTTT+GGG - tig0027382:6301-6320 Msa1433590:CDS 35.0%
AGGGACCTATTGGAAAAAAT+TGG + tig0027382:6361-6380 None:intergenic 35.0%
!! GTGAAAAGTATTGACCTTTC+AGG - tig0027382:6465-6484 Msa1433590:intron 35.0%
! TAAAGGCTTAAAGCTCCTTT+TGG - tig0027382:6713-6732 Msa1433590:intron 35.0%
! TTCAATGAAGCGTTTCCAAA+AGG + tig0027382:6731-6750 None:intergenic 35.0%
GAAACGCTTCATTGAACAAA+TGG - tig0027382:6735-6754 Msa1433590:intron 35.0%
ATGAATGCAGTTTCCTTAGT+TGG - tig0027382:6784-6803 Msa1433590:intron 35.0%
AGAAACTACTTGAGAAGAAC+AGG + tig0027382:6872-6891 None:intergenic 35.0%
GCTGATTGTAATATAACAGG+AGG - tig0027382:7176-7195 Msa1433590:intron 35.0%
!! AATGGAAGTTCCGTTTTTCT+TGG - tig0027382:7242-7261 Msa1433590:intron 35.0%
GTATCACTAAAATTGCACGA+TGG + tig0027382:8086-8105 None:intergenic 35.0%
! TTCCGACTATAGTTAACTTG+CGG + tig0027382:8234-8253 None:intergenic 35.0%
CAAGTTAACTATAGTCGGAA+AGG - tig0027382:8234-8253 Msa1433590:CDS 35.0%
CTAAATTCTAACAGAGGATG+GGG + tig0027382:8320-8339 None:intergenic 35.0%
TGATGAAGAAGAGAAAAGGG+TGG + tig0027382:3509-3528 None:intergenic 40.0%
AGTTCAGCATCAACTTCTTC+GGG + tig0027382:3615-3634 None:intergenic 40.0%
GAGTTCAGCATCAACTTCTT+CGG + tig0027382:3616-3635 None:intergenic 40.0%
GATCTCTTGCAATTTCTCGA+TGG + tig0027382:3646-3665 None:intergenic 40.0%
ACAGCATTCAACCAGAAATC+AGG + tig0027382:3919-3938 None:intergenic 40.0%
CTCATTCAGTAGTTCACTGA+GGG + tig0027382:4074-4093 None:intergenic 40.0%
GTGGACAAAACGAAACAGAA+TGG - tig0027382:4250-4269 Msa1433590:intron 40.0%
CCAACAGAACCGTTAATCAA+AGG + tig0027382:4429-4448 None:intergenic 40.0%
CCTTTGATTAACGGTTCTGT+TGG - tig0027382:4426-4445 Msa1433590:intron 40.0%
AGAAGAAGGGCAACTTACAA+GGG + tig0027382:4555-4574 None:intergenic 40.0%
! CAATCCCAATCCCTATTTTG+AGG - tig0027382:4734-4753 Msa1433590:intron 40.0%
! ACTTTTACCTTCCGTGAAGA+AGG - tig0027382:4774-4793 Msa1433590:intron 40.0%
TCTCTGTTGTTCCTTCTTCA+CGG + tig0027382:4788-4807 None:intergenic 40.0%
ACCCCCATAAAATGGAAAGA+AGG - tig0027382:4816-4835 Msa1433590:intron 40.0%
! GCCTTCTTTCCATTTTATGG+GGG + tig0027382:4820-4839 None:intergenic 40.0%
AATGGAAAGAAGGCAAGGTA+AGG - tig0027382:4826-4845 Msa1433590:intron 40.0%
ATGGAAAGAAGGCAAGGTAA+GGG - tig0027382:4827-4846 Msa1433590:intron 40.0%
TCGAACTTGATGAGATGCAT+AGG - tig0027382:4993-5012 Msa1433590:intron 40.0%
CGAACTTGATGAGATGCATA+GGG - tig0027382:4994-5013 Msa1433590:intron 40.0%
GAGATGCATAGGGAAAATAG+TGG - tig0027382:5004-5023 Msa1433590:CDS 40.0%
GTATGAATCTGTTCACTTGG+GGG - tig0027382:5159-5178 Msa1433590:intron 40.0%
! GACCTCTAGAAGAACAAATG+GGG - tig0027382:5261-5280 Msa1433590:intron 40.0%
TCTAGAAGAACAAATGGGGA+GGG - tig0027382:5265-5284 Msa1433590:intron 40.0%
! AGGTCTTTTACCATGAGCTT+GGG + tig0027382:5413-5432 None:intergenic 40.0%
! AAGGTCTTTTACCATGAGCT+TGG + tig0027382:5414-5433 None:intergenic 40.0%
TACATGTAGGGAATACCCAA+TGG - tig0027382:5497-5516 Msa1433590:intron 40.0%
TTCTCATGATTGTCGCCATT+GGG + tig0027382:5515-5534 None:intergenic 40.0%
GCGACAATCATGAGAAGAAA+GGG - tig0027382:5519-5538 Msa1433590:intron 40.0%
ATATTTCCTTACCTTCCGCT+TGG + tig0027382:5881-5900 None:intergenic 40.0%
AGCGGAAGGTAAGGAAATAT+TGG - tig0027382:5881-5900 Msa1433590:intron 40.0%
GCGGAAGGTAAGGAAATATT+GGG - tig0027382:5882-5901 Msa1433590:intron 40.0%
!! GAAAGTTGTTCAGGTTGTTG+AGG + tig0027382:6019-6038 None:intergenic 40.0%
TCCCATTACTATCGTTGCTA+TGG - tig0027382:6037-6056 Msa1433590:intron 40.0%
TTTCGCTATCAGTGCAATAG+CGG + tig0027382:6072-6091 None:intergenic 40.0%
TCCGTCAATTATTTGACGGA+TGG - tig0027382:6223-6242 Msa1433590:intron 40.0%
GCCATCCGTCAAATAATTGA+CGG + tig0027382:6227-6246 None:intergenic 40.0%
TGAATCCACCCGTCAAATAT+GGG + tig0027382:6250-6269 None:intergenic 40.0%
TTGAATCCACCCGTCAAATA+TGG + tig0027382:6251-6270 None:intergenic 40.0%
! TATTTGACGGGTGGATTCAA+TGG - tig0027382:6251-6270 Msa1433590:intron 40.0%
!! ATGGTGGATGTTTAAGAGTC+TGG - tig0027382:6333-6352 Msa1433590:intron 40.0%
! GCAAAGCACACAAGTTTTAC+TGG + tig0027382:6385-6404 None:intergenic 40.0%
GAGACTGCTCTTGACAATAT+GGG + tig0027382:6418-6437 None:intergenic 40.0%
AGAGACTGCTCTTGACAATA+TGG + tig0027382:6419-6438 None:intergenic 40.0%
!! TGGAAGAGTATCTTTATGCC+TGG - tig0027382:6494-6513 Msa1433590:intron 40.0%
AGCAAGACAGAGAGTAAAGT+AGG - tig0027382:6587-6606 Msa1433590:intron 40.0%
TCTGTCCTCAAATATGAAGG+TGG + tig0027382:6642-6661 None:intergenic 40.0%
GCTTCTGTCCTCAAATATGA+AGG + tig0027382:6645-6664 None:intergenic 40.0%
CACAGTCACAAAACCAACTA+AGG + tig0027382:6800-6819 None:intergenic 40.0%
CTGTGAGCAGAAAGATGATA+TGG - tig0027382:6815-6834 Msa1433590:intron 40.0%
ACACGTGGAAAACAAAGACA+GGG + tig0027382:6907-6926 None:intergenic 40.0%
ATTAGTCAAGTAGAGACACG+TGG + tig0027382:6922-6941 None:intergenic 40.0%
GCAGCTTGCAGAATTAATCA+AGG - tig0027382:7012-7031 Msa1433590:CDS 40.0%
CTCATCATCAGCTTCATCAT+CGG + tig0027382:7220-7239 None:intergenic 40.0%
! TGAAGCTGATGATGAGGTAA+TGG - tig0027382:7224-7243 Msa1433590:intron 40.0%
GAGTTAATGCCCTGAAAGAA+AGG + tig0027382:7973-7992 None:intergenic 40.0%
CATTAACTCATGTCAGCAAG+TGG - tig0027382:7984-8003 Msa1433590:CDS 40.0%
TACTGCATTTACTAGCCGTT+TGG - tig0027382:8161-8180 Msa1433590:intron 40.0%
ACTGCATTTACTAGCCGTTT+GGG - tig0027382:8162-8181 Msa1433590:intron 40.0%
TCCCGCAAGTTAACTATAGT+CGG - tig0027382:8229-8248 Msa1433590:CDS 40.0%
!! TCCGACTATAGTTAACTTGC+GGG + tig0027382:8233-8252 None:intergenic 40.0%
!! GAAAACGCGAAAGGGTGTTA+GGG + tig0027382:3483-3502 None:intergenic 45.0%
!! TGAAAACGCGAAAGGGTGTT+AGG + tig0027382:3484-3503 None:intergenic 45.0%
GGTGGAATGAAAACGCGAAA+GGG + tig0027382:3491-3510 None:intergenic 45.0%
CTCTTCTTCATCAACTTCCG+CGG - tig0027382:3516-3535 Msa1433590:three_prime_UTR 45.0%
GTTCTGTCTCCAACCATCTT+CGG + tig0027382:3567-3586 None:intergenic 45.0%
TTCGGTGAGTTTCTGCTTCT+TGG + tig0027382:3589-3608 None:intergenic 45.0%
CTTGCAATTTCTCGATGGAG+AGG + tig0027382:3641-3660 None:intergenic 45.0%
GATCCAAGATGACCTCGAAA+AGG - tig0027382:3662-3681 Msa1433590:three_prime_UTR 45.0%
!! GTACCTTTTCGAGGTCATCT+TGG + tig0027382:3668-3687 None:intergenic 45.0%
TCGTTCCGCTTATCGTAAAC+CGG + tig0027382:3880-3899 None:intergenic 45.0%
TTCAGTAGTTCACTGAGGGT+AGG + tig0027382:4070-4089 None:intergenic 45.0%
CCTCATTCAGTAGTTCACTG+AGG + tig0027382:4075-4094 None:intergenic 45.0%
CCTCAGTGAACTACTGAATG+AGG - tig0027382:4072-4091 Msa1433590:intron 45.0%
AAATTACTCGGCGTGTTCTG+TGG - tig0027382:4194-4213 Msa1433590:intron 45.0%
! TGTTTCGTTTTGTCCACGCT+GGG + tig0027382:4247-4266 None:intergenic 45.0%
CTAGCAATTGTTCAGAAGGC+AGG + tig0027382:4398-4417 None:intergenic 45.0%
CTGCCTTCTGAACAATTGCT+AGG - tig0027382:4396-4415 Msa1433590:intron 45.0%
GAGAAGAAGGGCAACTTACA+AGG + tig0027382:4556-4575 None:intergenic 45.0%
TGTTGTTCCTTCTTCACGGA+AGG + tig0027382:4784-4803 None:intergenic 45.0%
TCACTGCTACCCCCATAAAA+TGG - tig0027382:4808-4827 Msa1433590:CDS 45.0%
CTCCCCATTTGTTCTTCTAG+AGG + tig0027382:5266-5285 None:intergenic 45.0%
! CTCTAGAAGAACAAATGGGG+AGG - tig0027382:5264-5283 Msa1433590:intron 45.0%
ATGAGCTTGGGTCCACTATA+TGG + tig0027382:5401-5420 None:intergenic 45.0%
!! ATATAGTGGACCCAAGCTCA+TGG - tig0027382:5400-5419 Msa1433590:intron 45.0%
GGGTATTCCCTACATGTATC+AGG + tig0027382:5495-5514 None:intergenic 45.0%
CTTCTCATGATTGTCGCCAT+TGG + tig0027382:5516-5535 None:intergenic 45.0%
GGCGACAATCATGAGAAGAA+AGG - tig0027382:5518-5537 Msa1433590:intron 45.0%
AAAGGTCAGCCAAGAACAAG+TGG + tig0027382:5658-5677 None:intergenic 45.0%
TTGATGTCCTAATTGACGGC+AGG + tig0027382:5760-5779 None:intergenic 45.0%
TTCCAATATGACCAAGCGGA+AGG - tig0027382:5867-5886 Msa1433590:intron 45.0%
TACCTTCCGCTTGGTCATAT+TGG + tig0027382:5872-5891 None:intergenic 45.0%
ATATGACCAAGCGGAAGGTA+AGG - tig0027382:5872-5891 Msa1433590:intron 45.0%
!! TTGTTCAGGTTGTTGAGGTC+TGG + tig0027382:6014-6033 None:intergenic 45.0%
! ATAGCGGAGCTATTGTGTAG+CGG + tig0027382:6136-6155 None:intergenic 45.0%
GAATCCACCCGTCAAATATG+GGG + tig0027382:6249-6268 None:intergenic 45.0%
! TTGATTGGAGGTTTGGGATC+AGG - tig0027382:6307-6326 Msa1433590:CDS 45.0%
! TGATTGGAGGTTTGGGATCA+GGG - tig0027382:6308-6327 Msa1433590:CDS 45.0%
! TTTTACTGGCAGGGACCTAT+TGG + tig0027382:6371-6390 None:intergenic 45.0%
! GCACACAAGTTTTACTGGCA+GGG + tig0027382:6380-6399 None:intergenic 45.0%
! AGCACACAAGTTTTACTGGC+AGG + tig0027382:6381-6400 None:intergenic 45.0%
ATTGACCTTTCAGGAGTCGA+TGG - tig0027382:6474-6493 Msa1433590:intron 45.0%
! AGAGTATCTTTATGCCTGGC+TGG - tig0027382:6498-6517 Msa1433590:intron 45.0%
GACACGTGGAAAACAAAGAC+AGG + tig0027382:6908-6927 None:intergenic 45.0%
! CGATGATGAAGCTGATGATG+AGG - tig0027382:7218-7237 Msa1433590:intron 45.0%
CTTCTAGCAGCGATTTCTGA+AGG - tig0027382:7440-7459 Msa1433590:intron 45.0%
TTGTTCGCAGGAAAAAGACG+AGG - tig0027382:7820-7839 Msa1433590:intron 45.0%
TCTGAAGAGGATGACGAAGA+GGG - tig0027382:7848-7867 Msa1433590:intron 45.0%
AGACCATGGCCTTTCTTTCA+GGG - tig0027382:7961-7980 Msa1433590:CDS 45.0%
!! GACTATAGTTAACTTGCGGG+AGG + tig0027382:8230-8249 None:intergenic 45.0%
GGGTGGAATGAAAACGCGAA+AGG + tig0027382:3492-3511 None:intergenic 50.0%
TGTGTGAGTGAAGATTGCCG+CGG + tig0027382:3536-3555 None:intergenic 50.0%
GGCAATCTTCACTCACACAG+AGG - tig0027382:3537-3556 Msa1433590:three_prime_UTR 50.0%
! GGAAGCCGGTTTACGATAAG+CGG - tig0027382:3872-3891 Msa1433590:three_prime_UTR 50.0%
GTAGTTCACTGAGGGTAGGA+TGG + tig0027382:4066-4085 None:intergenic 50.0%
!!! GTAGTAGTTTTGACCCAGCG+TGG - tig0027382:4231-4250 Msa1433590:intron 50.0%
! CTGTTTCGTTTTGTCCACGC+TGG + tig0027382:4248-4267 None:intergenic 50.0%
GAAGAGGGGGAAGAGAAGAA+GGG + tig0027382:4568-4587 None:intergenic 50.0%
GAAGAACAAATGGGGAGGGT+TGG - tig0027382:5269-5288 Msa1433590:intron 50.0%
AAAGGCCTCCTGTTGATGTC+AGG - tig0027382:5546-5565 Msa1433590:intron 50.0%
ACCAACCTGACATCAACAGG+AGG + tig0027382:5554-5573 None:intergenic 50.0%
GACACCAACCTGACATCAAC+AGG + tig0027382:5557-5576 None:intergenic 50.0%
CATGGACAAAGCTGGAGAGT+GGG + tig0027382:5714-5733 None:intergenic 50.0%
TCATGGACAAAGCTGGAGAG+TGG + tig0027382:5715-5734 None:intergenic 50.0%
! GTTGAGGTCTGGAACGAACA+GGG + tig0027382:6003-6022 None:intergenic 50.0%
! TGTTGAGGTCTGGAACGAAC+AGG + tig0027382:6004-6023 None:intergenic 50.0%
TAGCGGAGCTATTGTGTAGC+GGG + tig0027382:6135-6154 None:intergenic 50.0%
ACGGATGGCCCCATATTTGA+CGG - tig0027382:6238-6257 Msa1433590:intron 50.0%
! GATTGGAGGTTTGGGATCAG+GGG - tig0027382:6309-6328 Msa1433590:CDS 50.0%
!! CTCTTCCATCGACTCCTGAA+AGG + tig0027382:6482-6501 None:intergenic 50.0%
TATGGCTGACATTCACGACG+AGG - tig0027382:6833-6852 Msa1433590:intron 50.0%
TCATCGGCATCCTCTTCATC+AGG + tig0027382:7204-7223 None:intergenic 50.0%
TGCGGTGATACTGTGCATAC+TGG - tig0027382:7378-7397 Msa1433590:intron 50.0%
! CTCTGAAGAGGATGACGAAG+AGG - tig0027382:7847-7866 Msa1433590:intron 50.0%
! TGACGAAGAGGGTGATGATG+AGG - tig0027382:7859-7878 Msa1433590:intron 50.0%
! GAAGAGGGTGATGATGAGGA+AGG - tig0027382:7863-7882 Msa1433590:intron 50.0%
CAGACCATGGCCTTTCTTTC+AGG - tig0027382:7960-7979 Msa1433590:CDS 50.0%
ATGCCCTGAAAGAAAGGCCA+TGG + tig0027382:7967-7986 None:intergenic 50.0%
GAGCTACACAAGCCAGTTAG+TGG - tig0027382:8006-8025 Msa1433590:CDS 50.0%
ATGGTCGGAGAACCACTAAC+TGG + tig0027382:8021-8040 None:intergenic 50.0%
ACACAGAGGCGAACCGAAGA+TGG - tig0027382:3551-3570 Msa1433590:three_prime_UTR 55.0%
AGAGGCGAACCGAAGATGGT+TGG - tig0027382:3555-3574 Msa1433590:three_prime_UTR 55.0%
GGAAGAGGGGGAAGAGAAGA+AGG + tig0027382:4569-4588 None:intergenic 55.0%
ACTTGGGGGTTGCACAAGAC+AGG - tig0027382:5173-5192 Msa1433590:intron 55.0%
CTTGGGGGTTGCACAAGACA+GGG - tig0027382:5174-5193 Msa1433590:intron 55.0%
GCCTCCTGTTGATGTCAGGT+TGG - tig0027382:5550-5569 Msa1433590:intron 55.0%
CGGATGGCCCCATATTTGAC+GGG - tig0027382:6239-6258 Msa1433590:intron 55.0%
ATGGCCCCATATTTGACGGG+TGG - tig0027382:6242-6261 Msa1433590:intron 55.0%
! GAGGTTTGGGATCAGGGGTA+TGG - tig0027382:6314-6333 Msa1433590:CDS 55.0%
! GTTTGGGATCAGGGGTATGG+TGG - tig0027382:6317-6336 Msa1433590:CDS 55.0%
AGAGTAATGCACAGCCAGCC+AGG + tig0027382:6515-6534 None:intergenic 55.0%
ACAGGAGGAGCCTGATGAAG+AGG - tig0027382:7191-7210 Msa1433590:intron 55.0%
! AGACGAGGACGACTCTGAAG+AGG - tig0027382:7835-7854 Msa1433590:intron 55.0%
! GCTTTTGGGCGTGCAGACCA+TGG - tig0027382:7947-7966 Msa1433590:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0027382 gene 3475 8374 3475 ID=Msa1433590;Name=Msa1433590
tig0027382 mRNA 3475 8374 3475 ID=Msa1433590-mRNA-1;Parent=Msa1433590;Name=Msa1433590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=95|1|1|1|1|1|10|482|265
tig0027382 exon 3475 4019 3475 ID=Msa1433590-mRNA-1:exon:8733;Parent=Msa1433590-mRNA-1
tig0027382 exon 4574 4654 4574 ID=Msa1433590-mRNA-1:exon:8732;Parent=Msa1433590-mRNA-1
tig0027382 exon 4777 4833 4777 ID=Msa1433590-mRNA-1:exon:8731;Parent=Msa1433590-mRNA-1
tig0027382 exon 4995 5055 4995 ID=Msa1433590-mRNA-1:exon:8730;Parent=Msa1433590-mRNA-1
tig0027382 exon 6282 6343 6282 ID=Msa1433590-mRNA-1:exon:8729;Parent=Msa1433590-mRNA-1
tig0027382 exon 7007 7120 7007 ID=Msa1433590-mRNA-1:exon:8728;Parent=Msa1433590-mRNA-1
tig0027382 exon 7293 7364 7293 ID=Msa1433590-mRNA-1:exon:8727;Parent=Msa1433590-mRNA-1
tig0027382 exon 7744 7794 7744 ID=Msa1433590-mRNA-1:exon:8726;Parent=Msa1433590-mRNA-1
tig0027382 exon 7913 8035 7913 ID=Msa1433590-mRNA-1:exon:8725;Parent=Msa1433590-mRNA-1
tig0027382 exon 8166 8374 8166 ID=Msa1433590-mRNA-1:exon:8724;Parent=Msa1433590-mRNA-1
tig0027382 five_prime_UTR 8280 8374 8280 ID=Msa1433590-mRNA-1:five_prime_utr;Parent=Msa1433590-mRNA-1
tig0027382 CDS 8166 8279 8166 ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382 CDS 7913 8035 7913 ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382 CDS 7744 7794 7744 ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382 CDS 7293 7364 7293 ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382 CDS 7007 7120 7007 ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382 CDS 6282 6343 6282 ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382 CDS 4995 5055 4995 ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382 CDS 4777 4833 4777 ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382 CDS 4574 4654 4574 ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382 CDS 3957 4019 3957 ID=Msa1433590-mRNA-1:cds;Parent=Msa1433590-mRNA-1
tig0027382 three_prime_UTR 3475 3956 3475 ID=Msa1433590-mRNA-1:three_prime_utr;Parent=Msa1433590-mRNA-1
Gene Sequence

>Msa1433590

ATGGTTGGAGACAGAACCAAGAAGCAGAAACTCACCGAAAATCCCGAAGAAGTTGATGCTGAACTCATCCTCTCCATCGAGAAATTGCAAGAGATCCAAGATGACCTCGAAAAGATTAATGATGAAGCGAGTGATAAGGTTCTCGAAATTGAGCAGAAGTATAATGAGATTAGGAAGCCGGTTTACGATAAGCGGAACGAGATTATCAAATCTATTCCTGATTTCTGGTTGAATGCTTTTTTGAGCCATCCTACCCTCAGTGAACTACTGAATGAGGAAGATCAAAAAATATTCAAGTATTTGAGTTCTCTTGAGGTTGAAGATAATAAGGATGTCAAATCTGGATACACAATCACCCTTAATTTCAATCCCAATCCCTATTTTGAGGATTCAAAACTTTCAAAGACTTTTACCTTCCGTGAAGAAGGAACAACAGAGATCACTGCTACCCCCATAAAATGGAAAGAAGGCAAGGGAATACCCAATGGCGACAATCATGAGAAGAAAGGGAACAAAAGGCCTCCTGTTGATGTCAGTTTCCTTAGTTGGTTTTGTGACTGTGAGCAGAAAGATGATATGGCTGACATTCACGACGAGCTTGCAGAATTAATCAAGGATGATTTATGGTCAAATCCACTCATTTATTTCAACAGTGAGGAGCCTGATGAAGAGGATGCCGATGATGAAGCTGATGATGAGGTAATGGAAGTTCCGTTTTTCTTGGAAAAAATAGAGGAAAAAGACGAGGACGACTCTGAAGAGGATGACGAAGAGGGTGATGATGAGGAAGGCAATTGA

Protein sequence

>Msa1433590

MVGDRTKKQKLTENPEEVDAELILSIEKLQEIQDDLEKINDEASDKVLEIEQKYNEIRKPVYDKRNEIIKSIPDFWLNAFLSHPTLSELLNEEDQKIFKYLSSLEVEDNKDVKSGYTITLNFNPNPYFEDSKLSKTFTFREEGTTEITATPIKWKEGKGIPNGDNHEKKGNKRPPVDVSFLSWFCDCEQKDDMADIHDELAELIKDDLWSNPLIYFNSEEPDEEDADDEADDEVMEVPFFLEKIEEKDEDDSEEDDEEGDDEEGN*