AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0469350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469350 MtrunA17_Chr3g0123951 98.361 366 6 0 1 366 1 366 0.0 752
Msa0469350 MtrunA17_Chr8g0382161 86.501 363 49 0 1 363 1 363 0.0 662
Msa0469350 MtrunA17_Chr3g0133061 30.347 346 190 10 23 360 584 886 2.75e-37 143
Msa0469350 MtrunA17_Chr6g0458421 28.531 354 192 9 17 360 23 325 2.45e-35 135
Msa0469350 MtrunA17_Chr4g0074041 30.205 341 194 10 24 360 93 393 5.17e-35 136
Msa0469350 MtrunA17_Chr6g0458441 28.933 356 188 10 17 360 121 423 5.57e-35 135
Msa0469350 MtrunA17_Chr5g0411271 29.855 345 182 10 24 360 155 447 7.38e-35 135
Msa0469350 MtrunA17_Chr5g0427301 31.481 324 186 10 23 340 542 835 1.09e-34 135
Msa0469350 MtrunA17_Chr6g0458431 27.954 347 189 9 24 360 95 390 1.72e-32 128
Msa0469350 MtrunA17_Chr1g0150541 29.781 319 186 8 24 334 182 470 2.24e-31 125
Msa0469350 MtrunA17_Chr1g0149991 29.539 369 186 14 16 340 176 514 7.37e-31 123
Msa0469350 MtrunA17_Chr5g0412381 29.102 323 190 8 23 338 424 714 2.85e-30 122
Msa0469350 MtrunA17_Chr2g0312901 27.746 346 211 8 23 365 22 331 3.72e-29 119
Msa0469350 MtrunA17_Chr2g0313171 30.172 348 187 12 24 360 465 767 1.78e-28 117
Msa0469350 MtrunA17_Chr1g0148321 30.696 316 169 9 24 330 108 382 3.02e-28 116
Msa0469350 MtrunA17_Chr3g0138791 30.794 315 170 11 24 330 108 382 2.07e-25 108
Msa0469350 MtrunA17_Chr8g0366721 26.744 344 185 10 24 360 213 496 1.11e-24 105
Msa0469350 MtrunA17_Chr4g0020741 27.100 369 221 13 24 363 183 532 6.50e-22 97.1
Msa0469350 MtrunA17_Chr5g0439971 27.187 320 181 9 22 330 203 481 1.06e-21 97.1
Msa0469350 MtrunA17_Chr1g0170261 26.415 318 182 8 24 330 202 478 3.07e-21 95.5
Msa0469350 MtrunA17_Chr4g0064671 27.459 244 112 5 169 360 13 243 5.14e-21 91.3
Msa0469350 MtrunA17_Chr8g0365831 24.928 349 199 13 24 360 165 462 2.51e-19 89.4
Msa0469350 MtrunA17_Chr7g0255591 33.129 163 87 5 208 363 754 901 2.52e-16 80.9
Msa0469350 MtrunA17_Chr4g0062491 25.000 312 167 11 64 360 32 291 6.04e-15 75.1
Msa0469350 MtrunA17_Chr2g0322211 27.234 235 141 8 137 364 652 863 1.01e-14 75.9
Msa0469350 MtrunA17_Chr4g0062561 24.138 348 190 12 24 360 254 538 2.85e-14 74.3
Msa0469350 MtrunA17_Chr7g0267641 29.778 225 127 10 153 363 730 937 2.92e-14 74.3
Msa0469350 MtrunA17_Chr1g0189101 29.091 165 96 5 208 366 765 914 3.43e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469350 AT2G22310.1 82.418 364 61 2 1 363 1 362 0.0 629
Msa0469350 AT4G39910.1 81.471 367 64 3 1 363 1 367 0.0 624
Msa0469350 AT2G22310.3 81.763 329 57 2 36 363 4 330 0.0 561
Msa0469350 AT2G22310.2 81.846 325 56 2 40 363 3 325 0.0 555
Msa0469350 AT4G24560.1 28.280 343 199 10 24 360 543 844 4.27e-36 140
Msa0469350 AT5G57990.1 29.070 344 193 13 24 360 108 407 7.67e-34 133
Msa0469350 AT3G14400.1 28.530 347 211 7 23 365 24 337 2.48e-32 128
Msa0469350 AT5G65450.2 30.063 316 181 10 23 330 348 631 2.03e-31 125
Msa0469350 AT5G65450.1 29.747 316 182 9 23 330 329 612 2.55e-31 125
Msa0469350 AT4G31670.1 28.213 319 191 10 24 334 169 457 1.17e-30 123
Msa0469350 AT2G24640.2 27.900 319 192 9 24 334 5 293 3.05e-28 115
Msa0469350 AT2G24640.1 27.900 319 192 9 24 334 175 463 3.62e-28 116
Msa0469350 AT1G17110.3 28.161 348 194 12 24 360 439 741 7.03e-27 112
Msa0469350 AT1G17110.1 28.161 348 194 12 24 360 439 741 7.03e-27 112
Msa0469350 AT1G17110.2 28.161 348 194 12 24 360 443 745 7.45e-27 112
Msa0469350 AT4G17895.1 29.014 355 176 12 24 360 177 473 4.30e-25 107
Msa0469350 AT3G49600.2 28.707 317 173 10 24 330 107 380 3.16e-24 105
Msa0469350 AT3G49600.1 28.707 317 173 10 24 330 107 380 3.16e-24 105
Msa0469350 AT3G49600.3 28.707 317 173 10 24 330 107 380 4.14e-24 104
Msa0469350 AT5G46740.1 28.696 345 196 10 24 360 164 466 1.86e-22 99.4
Msa0469350 AT3G11910.3 26.822 343 197 10 22 351 197 498 1.23e-20 94.4
Msa0469350 AT3G11910.1 26.822 343 197 10 22 351 197 498 1.23e-20 94.4
Msa0469350 AT3G11910.4 26.822 343 197 10 22 351 196 497 1.28e-20 94.4
Msa0469350 AT3G11910.2 26.822 343 197 10 22 351 196 497 1.28e-20 94.4
Msa0469350 AT5G06600.1 26.027 365 203 12 22 360 198 521 1.64e-20 94.0
Msa0469350 AT5G06600.2 26.027 365 203 12 22 360 197 520 1.97e-20 93.6
Msa0469350 AT5G06600.3 26.027 365 203 12 22 360 198 521 2.15e-20 93.6
Msa0469350 AT5G10790.2 24.737 380 200 11 15 339 42 390 1.13e-18 87.4
Msa0469350 AT5G10790.1 24.474 380 201 11 15 339 171 519 2.93e-18 86.7
Msa0469350 AT5G46740.2 28.405 257 139 7 110 360 40 257 2.74e-16 80.5
Msa0469350 AT5G22030.2 30.723 166 94 6 204 363 761 911 9.71e-14 73.2
Msa0469350 AT5G22030.1 30.723 166 94 6 204 363 719 869 1.04e-13 73.2
Msa0469350 AT2G40930.1 31.250 160 88 6 208 360 769 913 1.22e-13 72.8
Msa0469350 AT2G40930.2 31.250 160 88 6 208 360 769 913 1.22e-13 72.8
Msa0469350 AT4G10590.4 31.325 166 93 6 204 363 744 894 8.06e-12 67.4
Msa0469350 AT4G10590.3 31.325 166 93 6 204 363 744 894 8.06e-12 67.4
Msa0469350 AT4G10590.1 31.325 166 93 6 204 363 744 894 8.06e-12 67.4
Msa0469350 AT4G10590.2 31.325 166 93 6 204 363 744 894 8.06e-12 67.4
Msa0469350 AT4G10570.1 31.325 166 93 6 204 363 745 895 1.08e-11 67.0
Msa0469350 AT1G32850.1 29.651 172 96 7 203 366 729 883 2.46e-11 65.9

Find 100 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCAGTGCAGACATTCTT+TGG 0.226632 3_3:+71166894 Msa0469350:CDS
TCACACCTGTCTTCCTCTTC+TGG 0.239068 3_3:-71164770 None:intergenic
TGATCAATTCAACGCGCTTA+TGG 0.265342 3_3:+71162747 Msa0469350:exon
GAACAATTGCTACAATATTA+TGG 0.282416 3_3:+71163670 Msa0469350:CDS
GAAAACAAGGGTTTGGTTGC+AGG 0.295988 3_3:-71162636 None:intergenic
AAATGAACTTGTTGACATTC+TGG 0.297380 3_3:+71165649 Msa0469350:CDS
CAACCTCTGTACAAATCGTT+TGG 0.322213 3_3:-71164799 None:intergenic
CCAAAGTAATGTTCTCCTTC+AGG 0.328815 3_3:-71162814 None:intergenic
TACTTTGGCCTCGAGAATTT+CGG 0.330275 3_3:+71162829 Msa0469350:CDS
TTTCACCGACAATGTGTTCA+TGG 0.344301 3_3:+71167258 Msa0469350:three_prime_UTR
TTCACAACCGTATCCTTTCC+AGG 0.348662 3_3:-71167114 None:intergenic
ACAACAAATCAACCGAATAA+TGG 0.350760 3_3:+71162675 Msa0469350:five_prime_UTR
GCAGAAAATTGAGAGGTTTA+CGG 0.360263 3_3:-71162591 None:intergenic
CAAAACATAACCAGTGGTTA+TGG 0.364423 3_3:-71166842 None:intergenic
CACCTCAAGCAGCTTGAATA+GGG 0.371228 3_3:-71167083 None:intergenic
ACACCTCAAGCAGCTTGAAT+AGG 0.376767 3_3:-71167084 None:intergenic
TTGCAAGCACCTTGTCTCAT+TGG 0.376816 3_3:-71166017 None:intergenic
TTGCAGTAGTTGTCCATGTT+GGG 0.380146 3_3:+71166778 Msa0469350:CDS
CCATTAGCTAAACCACTCTT+TGG 0.383199 3_3:-71165740 None:intergenic
AGCAGCTTGAATAGGGAAAA+TGG 0.388505 3_3:-71167076 None:intergenic
GATCAATTCAACGCGCTTAT+GGG 0.389504 3_3:+71162748 Msa0469350:exon
CTTCAGTGCAGACATTCTTT+GGG 0.391927 3_3:+71166895 Msa0469350:CDS
TGTAGCAATTGTTCTCGAAA+TGG 0.394146 3_3:-71163661 None:intergenic
AAAGAAAGAAAACAAGGGTT+TGG 0.396825 3_3:-71162643 None:intergenic
AACCTCTGTACAAATCGTTT+GGG 0.398526 3_3:-71164798 None:intergenic
AACGCGCTTATGGGTGGTTC+TGG 0.402741 3_3:+71162757 Msa0469350:exon
GGGTTTGGTTGCAGGAGAAA+TGG 0.406985 3_3:-71162628 None:intergenic
CTCCGGTTCAACTCAGTGAA+TGG 0.415224 3_3:-71162707 None:intergenic
TTCCATTCACTGAGTTGAAC+CGG 0.419523 3_3:+71162705 Msa0469350:five_prime_UTR
TGGAATCGCAGTCCATTATT+CGG 0.422546 3_3:-71162687 None:intergenic
TTGTCTTTCCCCTTGAACTC+AGG 0.435602 3_3:+71166712 Msa0469350:CDS
CACACCTGTCTTCCTCTTCT+GGG 0.437291 3_3:-71164769 None:intergenic
TATCACTCAACCTGAGTTCA+AGG 0.443968 3_3:-71166722 None:intergenic
CCTGAAGGAGAACATTACTT+TGG 0.451777 3_3:+71162814 Msa0469350:CDS
CCAAAGAGTGGTTTAGCTAA+TGG 0.456689 3_3:+71165740 Msa0469350:CDS
GAACATCAAGGCGATCTAGT+AGG 0.457073 3_3:+71162491 Msa0469350:five_prime_UTR
CAAAGTAATGTTCTCCTTCA+GGG 0.463000 3_3:-71162813 None:intergenic
AAAAGAGCCTTTAGCTACTT+GGG 0.466028 3_3:+71165769 Msa0469350:CDS
TTCCCTATTCAAGCTGCTTG+AGG 0.469530 3_3:+71167081 Msa0469350:three_prime_UTR
CAGAGATCTTGTAAGTAAAA+CGG 0.469640 3_3:-71162464 None:intergenic
TTGTGCACCCAAGTAGCTAA+AGG 0.471803 3_3:-71165776 None:intergenic
TTTGCAGTAGTTGTCCATGT+TGG 0.472175 3_3:+71166777 Msa0469350:CDS
ACAAATAGTTCAAGAACTCA+TGG 0.473994 3_3:-71165625 None:intergenic
CAGACATAATGTCCGTGGTT+GGG 0.501159 3_3:-71166807 None:intergenic
GCTTGAGGTGTTATACCTCC+TGG 0.508191 3_3:+71167096 Msa0469350:three_prime_UTR
AAAGAGACCTCCACGTGTCT+TGG 0.509264 3_3:+71166623 Msa0469350:CDS
TAAATACGCGTACGTGTGTG+TGG 0.518147 3_3:+71162542 Msa0469350:five_prime_UTR
GCGATCTAGTAGGGAAATAA+CGG 0.521066 3_3:+71162501 Msa0469350:five_prime_UTR
TAGTTGTCCATGTTGGGAGT+GGG 0.524445 3_3:+71166784 Msa0469350:CDS
AACATCAAGGCGATCTAGTA+GGG 0.525605 3_3:+71162492 Msa0469350:five_prime_UTR
TCTAAACTCGAGAAGGCTCT+CGG 0.528934 3_3:+71162781 Msa0469350:CDS
AGTTCCCAGAAGAGGAAGAC+AGG 0.531654 3_3:+71164765 Msa0469350:CDS
AGAAAGAAAGAAAGAAAACA+AGG 0.537899 3_3:-71162649 None:intergenic
GTAGTTGTCCATGTTGGGAG+TGG 0.545060 3_3:+71166783 Msa0469350:CDS
GGTTGGGCCCACTCCCAACA+TGG 0.549398 3_3:-71166791 None:intergenic
TAACACCATGAACACATTGT+CGG 0.550479 3_3:-71167263 None:intergenic
GTTTGCAAGAAGCTCAGAAG+AGG 0.550711 3_3:+71166592 Msa0469350:intron
ATCACTCAACCTGAGTTCAA+GGG 0.571357 3_3:-71166721 None:intergenic
GCAGACATAATGTCCGTGGT+TGG 0.577071 3_3:-71166808 None:intergenic
CTCCCAAACGATTTGTACAG+AGG 0.577523 3_3:+71164796 Msa0469350:CDS
TATAGATAAGTTCCCAGAAG+AGG 0.577641 3_3:+71164757 Msa0469350:intron
CGGTTGTGAAAATGTATGCT+AGG 0.583852 3_3:+71167127 Msa0469350:three_prime_UTR
CTTCCGTAGCTATATGCACC+AGG 0.590612 3_3:+71164839 Msa0469350:CDS
TTCTGGTTCTAAACTCGAGA+AGG 0.590698 3_3:+71162774 Msa0469350:CDS
CAAATAGTTCAAGAACTCAT+GGG 0.594052 3_3:-71165624 None:intergenic
GTTGGGAGTGGGCCCAACCA+CGG 0.596385 3_3:+71166795 Msa0469350:CDS
AATGTGAAACTGTTACCGCT+AGG 0.596426 3_3:+71166038 Msa0469350:CDS
TATACCTCCTGGAAAGGATA+CGG 0.596449 3_3:+71167107 Msa0469350:three_prime_UTR
CCATTCGCAATCTTCTCAGA+AGG 0.599118 3_3:-71165716 None:intergenic
CAATTCAACGCGCTTATGGG+TGG 0.601033 3_3:+71162751 Msa0469350:exon
TTTAAGTACATGGAACAGCT+GGG 0.603531 3_3:+71166663 Msa0469350:CDS
GTACCTGGTGCATATAGCTA+CGG 0.605797 3_3:-71164842 None:intergenic
ATTGCGAATGGACCAAAGAG+TGG 0.607250 3_3:+71165728 Msa0469350:CDS
GAAAGAAAGAAAGAAAACAA+GGG 0.607288 3_3:-71162648 None:intergenic
GATCTCTGTTTCGAACATCA+AGG 0.612310 3_3:+71162479 Msa0469350:five_prime_UTR
AGGTGTTATACCTCCTGGAA+AGG 0.616671 3_3:+71167101 Msa0469350:three_prime_UTR
CGTAAAACAAAATGTAACCA+TGG 0.617281 3_3:-71166947 None:intergenic
GTCAAATGCAGAAAATTGAG+AGG 0.618528 3_3:-71162598 None:intergenic
AGATACGACAGTATACATGC+TGG 0.621357 3_3:+71167230 Msa0469350:three_prime_UTR
CTCGGCGATAATTTCCCTGA+AGG 0.623448 3_3:+71162799 Msa0469350:CDS
TCACTCAACCTGAGTTCAAG+GGG 0.625682 3_3:-71166720 None:intergenic
AAATACGCGTACGTGTGTGT+GGG 0.626278 3_3:+71162543 Msa0469350:five_prime_UTR
TTCAACAATAATACAGACCA+TGG 0.626392 3_3:+71166930 Msa0469350:CDS
CCTTCTGAGAAGATTGCGAA+TGG 0.627827 3_3:+71165716 Msa0469350:CDS
CGTCGTCAAAACATAACCAG+TGG 0.628688 3_3:-71166848 None:intergenic
ATGTGAAACTGTTACCGCTA+GGG 0.633533 3_3:+71166039 Msa0469350:CDS
CGCGTATTTATAAGTGATTG+CGG 0.634750 3_3:-71162529 None:intergenic
CAAGGCAGACATAATGTCCG+TGG 0.637860 3_3:-71166812 None:intergenic
GAAAATGTATGCTAGGTGGT+TGG 0.667742 3_3:+71167134 Msa0469350:three_prime_UTR
TGACGACGAAACTGTCGAGG+TGG 0.668810 3_3:+71166863 Msa0469350:CDS
TGAATGACCAAGACACGTGG+AGG 0.677606 3_3:-71166630 None:intergenic
AAGTATTGCCGAAATTCTCG+AGG 0.684941 3_3:-71162837 None:intergenic
CATTAACAGAAACTAGACAG+TGG 0.687135 3_3:+71166974 Msa0469350:exon
GGTAAGACAGCTTCTTGTAG+CGG 0.692354 3_3:-71166686 None:intergenic
AGATGAATGACCAAGACACG+TGG 0.706612 3_3:-71166633 None:intergenic
GTTCAAGGGGAAAGACAACA+CGG 0.707575 3_3:-71166707 None:intergenic
ACAGAAACTAGACAGTGGAG+AGG 0.717214 3_3:+71166979 Msa0469350:exon
ACAACCGTATCCTTTCCAGG+AGG 0.737627 3_3:-71167111 None:intergenic
GAATACTTACCAATGAGACA+AGG 0.751910 3_3:+71166008 Msa0469350:CDS
TTGTGAAAATGTATGCTAGG+TGG 0.766619 3_3:+71167130 Msa0469350:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTATTTATTATATGTATT+TGG + chr3_3:71163408-71163427 Msa0469350:intron 10.0%
!! ACTATTTATTATATGTATTT+GGG + chr3_3:71163409-71163428 Msa0469350:intron 10.0%
!!! AGATTTTTAAATTTTCATTT+CGG + chr3_3:71165954-71165973 Msa0469350:intron 10.0%
!! TTAAAAAAAAGTAGTAAAAT+AGG - chr3_3:71166226-71166245 None:intergenic 10.0%
!!! ATTTTACTACTTTTTTTTAA+AGG + chr3_3:71166226-71166245 Msa0469350:intron 10.0%
!!! TTTTACTACTTTTTTTTAAA+GGG + chr3_3:71166227-71166246 Msa0469350:intron 10.0%
!! ATTAAAAACGAAAATAAAAA+AGG - chr3_3:71167197-71167216 None:intergenic 10.0%
!!! TTTACTCTAAAATAAACTTA+AGG - chr3_3:71163102-71163121 None:intergenic 15.0%
!! TTATGATTATAGAATTTATC+TGG + chr3_3:71163840-71163859 Msa0469350:intron 15.0%
!!! TCTCTTTTTTAATAATATCT+GGG - chr3_3:71163978-71163997 None:intergenic 15.0%
!! AGATATTATTAAAAAAGAGA+CGG + chr3_3:71163978-71163997 Msa0469350:intron 15.0%
!! TAAATCAGAATAATAAACAA+TGG - chr3_3:71164128-71164147 None:intergenic 15.0%
!!! GTTATTTTATTTTTGTTAGA+AGG + chr3_3:71165350-71165369 Msa0469350:intron 15.0%
!!! TTTTTATTACTTTTAGTAAG+AGG + chr3_3:71166250-71166269 Msa0469350:intron 15.0%
!!! TATTTTCTAAATTCTGAATC+TGG - chr3_3:71162913-71162932 None:intergenic 20.0%
!!! ATTATTGTTTTGCTGAATTT+AGG + chr3_3:71163020-71163039 Msa0469350:intron 20.0%
!! TTGAAACATTCATTTCATAA+TGG - chr3_3:71163163-71163182 None:intergenic 20.0%
!! ATGAAATGAATGTTTCAAAA+AGG + chr3_3:71163165-71163184 Msa0469350:intron 20.0%
!! GATAGTAAGTTGTTAAAATA+CGG + chr3_3:71163249-71163268 Msa0469350:intron 20.0%
!! ATAGTAAGTTGTTAAAATAC+GGG + chr3_3:71163250-71163269 Msa0469350:intron 20.0%
!! GAGATTATGAATATATCAAA+AGG - chr3_3:71163338-71163357 None:intergenic 20.0%
!! TTGATATATTCATAATCTCA+AGG + chr3_3:71163339-71163358 Msa0469350:intron 20.0%
!!! CTAATTTTTAGTCTTACTAT+TGG + chr3_3:71163478-71163497 Msa0469350:intron 20.0%
!! TTAAAAAGTTACTAATTTGG+TGG - chr3_3:71163929-71163948 None:intergenic 20.0%
!! TGGTTAAAAAGTTACTAATT+TGG - chr3_3:71163932-71163951 None:intergenic 20.0%
!!! CTCTTTTTTAATAATATCTG+GGG - chr3_3:71163977-71163996 None:intergenic 20.0%
!!! GTCTCTTTTTTAATAATATC+TGG - chr3_3:71163979-71163998 None:intergenic 20.0%
!! AAATACAATAGCTAACAAAA+AGG - chr3_3:71164349-71164368 None:intergenic 20.0%
!!! TTTTTGTTAGCTATTGTATT+TGG + chr3_3:71164348-71164367 Msa0469350:intron 20.0%
!! ATCTATATCAAGAAATAACA+TGG - chr3_3:71164744-71164763 None:intergenic 20.0%
!!! TAAAAATATTTTCTGCTCAA+GGG - chr3_3:71165245-71165264 None:intergenic 20.0%
!!! TTAAAAATATTTTCTGCTCA+AGG - chr3_3:71165246-71165265 None:intergenic 20.0%
!!! TTAATCTTCTCATATTTTGT+AGG + chr3_3:71165598-71165617 Msa0469350:intron 20.0%
!! ATTAACAACTTCACAATTTA+TGG - chr3_3:71165872-71165891 None:intergenic 20.0%
!!! TCTTATTTTTGTGATCATTA+TGG - chr3_3:71165937-71165956 None:intergenic 20.0%
! GAAAGAAAGAAAGAAAACAA+GGG - chr3_3:71162651-71162670 None:intergenic 25.0%
! AGAAAGAAAGAAAGAAAACA+AGG - chr3_3:71162652-71162671 None:intergenic 25.0%
! TTCGTCAAACAATGAATATT+AGG + chr3_3:71163046-71163065 Msa0469350:intron 25.0%
! AACATTCATTTCATAATGGT+GGG - chr3_3:71163159-71163178 None:intergenic 25.0%
! AAACATTCATTTCATAATGG+TGG - chr3_3:71163160-71163179 None:intergenic 25.0%
! ATGAATATATCAAAAGGTTC+CGG - chr3_3:71163332-71163351 None:intergenic 25.0%
!!! TTTGTAGGTCACTTTTAAAT+AGG - chr3_3:71163366-71163385 None:intergenic 25.0%
!! ATGTATGTACTTTGTTTATG+AGG + chr3_3:71163434-71163453 Msa0469350:intron 25.0%
!!! TTTTAGTCTTACTATTGGAA+AGG + chr3_3:71163483-71163502 Msa0469350:intron 25.0%
! ATACCTTGTAACTAAATTTG+TGG + chr3_3:71163599-71163618 Msa0469350:intron 25.0%
! AAACCACAAATTTAGTTACA+AGG - chr3_3:71163605-71163624 None:intergenic 25.0%
! GAACAATTGCTACAATATTA+TGG + chr3_3:71163670-71163689 Msa0469350:CDS 25.0%
! TTAGTCAATCAAATACGAAA+AGG - chr3_3:71163812-71163831 None:intergenic 25.0%
!! AAAATTAGTTGGTCTAAGTA+TGG - chr3_3:71163952-71163971 None:intergenic 25.0%
!! AAATGATGCCATTCTAATTT+TGG - chr3_3:71164045-71164064 None:intergenic 25.0%
! GATAAACTTAACCAATAGTA+GGG - chr3_3:71164267-71164286 None:intergenic 25.0%
! TGATAAACTTAACCAATAGT+AGG - chr3_3:71164268-71164287 None:intergenic 25.0%
!! TACTATTGGTTAAGTTTATC+AGG + chr3_3:71164267-71164286 Msa0469350:intron 25.0%
!! TAACTAAGGAAACAGATTTT+AGG - chr3_3:71164315-71164334 None:intergenic 25.0%
! AGGAACATAAATGTTAACTA+AGG - chr3_3:71164329-71164348 None:intergenic 25.0%
!!! TGTCTTGTTTATTTCTTTCA+TGG + chr3_3:71164707-71164726 Msa0469350:intron 25.0%
! AAACTACACATTTGAAAAAC+AGG - chr3_3:71165502-71165521 None:intergenic 25.0%
!!! TGTTTTAAATTGCTTTGATC+AGG + chr3_3:71165985-71166004 Msa0469350:intron 25.0%
!!! GTTTTAAATTGCTTTGATCA+GGG + chr3_3:71165986-71166005 Msa0469350:intron 25.0%
! TAGATAATATTGAAGCCATT+TGG - chr3_3:71166304-71166323 None:intergenic 25.0%
!! ACTAGTAATATGATGTTTTC+TGG + chr3_3:71166385-71166404 Msa0469350:intron 25.0%
!! CTAGTAATATGATGTTTTCT+GGG + chr3_3:71166386-71166405 Msa0469350:intron 25.0%
! ATTATATTCATAACCCTTTC+AGG - chr3_3:71166491-71166510 None:intergenic 25.0%
! TCAAAAGAAAGATTGCATTT+CGG - chr3_3:71166567-71166586 None:intergenic 25.0%
!!! TTTTAGGTACTTGAATCTTT+TGG + chr3_3:71167010-71167029 Msa0469350:three_prime_UTR 25.0%
!!! TTTTGGACTAGTCTTTTTAT+CGG + chr3_3:71167027-71167046 Msa0469350:three_prime_UTR 25.0%
AAAGAAAGAAAACAAGGGTT+TGG - chr3_3:71162646-71162665 None:intergenic 30.0%
ACAACAAATCAACCGAATAA+TGG + chr3_3:71162675-71162694 Msa0469350:five_prime_UTR 30.0%
CAAAAACTTAGATCTTTCTC+CGG - chr3_3:71162727-71162746 None:intergenic 30.0%
GTTTGTTTGACATTAGCATT+TGG + chr3_3:71163073-71163092 Msa0469350:intron 30.0%
TAAACCACCAAATTCTTTGT+AGG + chr3_3:71163118-71163137 Msa0469350:intron 30.0%
AAACCACCAAATTCTTTGTA+GGG + chr3_3:71163119-71163138 Msa0469350:intron 30.0%
TTAACCACTTACCATCAATT+AGG - chr3_3:71163277-71163296 None:intergenic 30.0%
TAAAAGTGACCTACAAAATG+AGG + chr3_3:71163369-71163388 Msa0469350:intron 30.0%
AAAAGTGACCTACAAAATGA+GGG + chr3_3:71163370-71163389 Msa0469350:intron 30.0%
! ATATTAGTCCCTCATTTTGT+AGG - chr3_3:71163381-71163400 None:intergenic 30.0%
TACAAAATGAGGGACTAATA+TGG + chr3_3:71163380-71163399 Msa0469350:intron 30.0%
ACAAAATGAGGGACTAATAT+GGG + chr3_3:71163381-71163400 Msa0469350:intron 30.0%
!!! AAATTAGTTTTGCTACTCGT+TGG - chr3_3:71163465-71163484 None:intergenic 30.0%
GCATATTCAGAATATCTAGA+CGG + chr3_3:71163543-71163562 Msa0469350:intron 30.0%
!!! GTTTTTTCTTCTCATTCTAC+AGG + chr3_3:71163621-71163640 Msa0469350:intron 30.0%
GATTATAGAATTTATCTGGC+TGG + chr3_3:71163844-71163863 Msa0469350:intron 30.0%
CACATGTTATTGATGTTACA+TGG + chr3_3:71163888-71163907 Msa0469350:intron 30.0%
TATTGATGTTACATGGATGA+AGG + chr3_3:71163895-71163914 Msa0469350:intron 30.0%
! AAGTTACTAATTTGGTGGAT+TGG - chr3_3:71163924-71163943 None:intergenic 30.0%
! TATCTGGGGTAAAAATTAGT+TGG - chr3_3:71163963-71163982 None:intergenic 30.0%
ATCATTTGCAAATTGTAGCT+AGG + chr3_3:71164058-71164077 Msa0469350:intron 30.0%
CAGAATAATAAACAATGGCA+TGG - chr3_3:71164123-71164142 None:intergenic 30.0%
! GTGTTTTACACTATCAATGT+GGG - chr3_3:71164155-71164174 None:intergenic 30.0%
ACACATGTAGAATGAATAGT+GGG - chr3_3:71164199-71164218 None:intergenic 30.0%
AACACATGTAGAATGAATAG+TGG - chr3_3:71164200-71164219 None:intergenic 30.0%
TTCTACAAGGGAAACAAAAA+AGG - chr3_3:71164376-71164395 None:intergenic 30.0%
!! TTTTTGTTTCCCTTGTAGAA+TGG + chr3_3:71164376-71164395 Msa0469350:intron 30.0%
ATTCTATGCATTACTCTTGA+AGG - chr3_3:71164934-71164953 None:intergenic 30.0%
CAATGATCTACCAATTGAAA+TGG - chr3_3:71165093-71165112 None:intergenic 30.0%
CATTTCAATTGGTAGATCAT+TGG + chr3_3:71165091-71165110 Msa0469350:intron 30.0%
!! CTAAAAACAGTTTTGCTATC+GGG - chr3_3:71165151-71165170 None:intergenic 30.0%
!! GCTAAAAACAGTTTTGCTAT+CGG - chr3_3:71165152-71165171 None:intergenic 30.0%
TAGCTTATAGTTGAACTTGA+TGG + chr3_3:71165168-71165187 Msa0469350:intron 30.0%
! TATAGTTGAACTTGATGGTT+AGG + chr3_3:71165173-71165192 Msa0469350:intron 30.0%
ATCACTTTCTACAAATGTTC+CGG - chr3_3:71165291-71165310 None:intergenic 30.0%
TGAATGTGTTATGGAAACAA+AGG - chr3_3:71165394-71165413 None:intergenic 30.0%
CAAATAGTTCAAGAACTCAT+GGG - chr3_3:71165627-71165646 None:intergenic 30.0%
ACAAATAGTTCAAGAACTCA+TGG - chr3_3:71165628-71165647 None:intergenic 30.0%
!! AAATGAACTTGTTGACATTC+TGG + chr3_3:71165649-71165668 Msa0469350:CDS 30.0%
GCTCAATTAAATCTAGTATG+CGG + chr3_3:71165893-71165912 Msa0469350:intron 30.0%
AATTAAATCTAGTATGCGGT+GGG + chr3_3:71165897-71165916 Msa0469350:intron 30.0%
AAAAAACATTTCATCCCTAG+CGG - chr3_3:71166056-71166075 None:intergenic 30.0%
! TATGATGTTTTCTGGGTATA+TGG + chr3_3:71166393-71166412 Msa0469350:intron 30.0%
TAGGTTAACAATCCATTGAT+TGG + chr3_3:71166446-71166465 Msa0469350:intron 30.0%
TGAGAAAAATTGCCAATCAA+TGG - chr3_3:71166461-71166480 None:intergenic 30.0%
! TTTCTCATTGATTACCTGAA+AGG + chr3_3:71166474-71166493 Msa0469350:intron 30.0%
! TTCTCATTGATTACCTGAAA+GGG + chr3_3:71166475-71166494 Msa0469350:intron 30.0%
!! TCTTAAGCGTTTTAAGTACA+TGG + chr3_3:71166653-71166672 Msa0469350:CDS 30.0%
!!! AGTGGTTATGGTTTTTTACA+AGG - chr3_3:71166833-71166852 None:intergenic 30.0%
TTGTAAAAAACCATAACCAC+TGG + chr3_3:71166832-71166851 Msa0469350:CDS 30.0%
TTCAACAATAATACAGACCA+TGG + chr3_3:71166930-71166949 Msa0469350:CDS 30.0%
CGTAAAACAAAATGTAACCA+TGG - chr3_3:71166950-71166969 None:intergenic 30.0%
CGCGTATTTATAAGTGATTG+CGG - chr3_3:71162532-71162551 None:intergenic 35.0%
GCAGAAAATTGAGAGGTTTA+CGG - chr3_3:71162594-71162613 None:intergenic 35.0%
GTCAAATGCAGAAAATTGAG+AGG - chr3_3:71162601-71162620 None:intergenic 35.0%
CAAAGTAATGTTCTCCTTCA+GGG - chr3_3:71162816-71162835 None:intergenic 35.0%
GATCTTCTGATAGCATATGA+AGG + chr3_3:71163218-71163237 Msa0469350:intron 35.0%
AAAATACGGGACCTAATTGA+TGG + chr3_3:71163263-71163282 Msa0469350:intron 35.0%
CTTGACAGTTTAATAGAGTC+CGG + chr3_3:71163310-71163329 Msa0469350:intron 35.0%
CAAAATGAGGGACTAATATG+GGG + chr3_3:71163382-71163401 Msa0469350:intron 35.0%
! TGTACTTTGTTTATGAGGTC+AGG + chr3_3:71163439-71163458 Msa0469350:intron 35.0%
TGTAGCAATTGTTCTCGAAA+TGG - chr3_3:71163664-71163683 None:intergenic 35.0%
! CTTAGCTGAACTATTTTCAC+AGG + chr3_3:71163738-71163757 Msa0469350:CDS 35.0%
! CTAATTTTGGATGGTCACAA+AGG - chr3_3:71164032-71164051 None:intergenic 35.0%
GTGACCATCCAAAATTAGAA+TGG + chr3_3:71164034-71164053 Msa0469350:intron 35.0%
! GATGCCATTCTAATTTTGGA+TGG - chr3_3:71164041-71164060 None:intergenic 35.0%
AATAAACAATGGCATGGAGA+TGG - chr3_3:71164117-71164136 None:intergenic 35.0%
! GGTGTTTTACACTATCAATG+TGG - chr3_3:71164156-71164175 None:intergenic 35.0%
TAGTAACAACTGGAGAGAAA+AGG - chr3_3:71164231-71164250 None:intergenic 35.0%
TTTCTCTCCAGTTGTTACTA+AGG + chr3_3:71164231-71164250 Msa0469350:intron 35.0%
TTCTCTCCAGTTGTTACTAA+GGG + chr3_3:71164232-71164251 Msa0469350:intron 35.0%
GAAATTCCCTTAGTAACAAC+TGG - chr3_3:71164241-71164260 None:intergenic 35.0%
GGAATTTCATACCCTACTAT+TGG + chr3_3:71164253-71164272 Msa0469350:intron 35.0%
! GACATGACTAGTTACTTGTA+GGG + chr3_3:71164289-71164308 Msa0469350:intron 35.0%
! TTCTCCCTTTTTGTGCTTTT+CGG + chr3_3:71164543-71164562 Msa0469350:intron 35.0%
! TCAACCGAAAAGCACAAAAA+GGG - chr3_3:71164550-71164569 None:intergenic 35.0%
TCGGTTGAGGTATAAGAAAT+TGG + chr3_3:71164562-71164581 Msa0469350:intron 35.0%
GAGGTATAAGAAATTGGAAG+AGG + chr3_3:71164568-71164587 Msa0469350:intron 35.0%
!!! AAATTGGAAGAGGTGCTTTT+CGG + chr3_3:71164578-71164597 Msa0469350:intron 35.0%
TATAGATAAGTTCCCAGAAG+AGG + chr3_3:71164757-71164776 Msa0469350:intron 35.0%
AACCTCTGTACAAATCGTTT+GGG - chr3_3:71164801-71164820 None:intergenic 35.0%
TGTCAGTTTGAAAATGTACC+TGG - chr3_3:71164860-71164879 None:intergenic 35.0%
TTGTACATGTGTACAGTGTT+TGG + chr3_3:71164960-71164979 Msa0469350:intron 35.0%
CAAAGTTGCACCATTTCAAT+TGG + chr3_3:71165080-71165099 Msa0469350:intron 35.0%
TACAATGATATGAGTCGCTT+GGG - chr3_3:71165122-71165141 None:intergenic 35.0%
ATACAATGATATGAGTCGCT+TGG - chr3_3:71165123-71165142 None:intergenic 35.0%
TTTCCATAACACATTCAGTG+AGG + chr3_3:71165397-71165416 Msa0469350:intron 35.0%
CATTCAGTGAGGTTGAATAA+CGG + chr3_3:71165408-71165427 Msa0469350:intron 35.0%
AAAAAGAGCCTTTAGCTACT+TGG + chr3_3:71165768-71165787 Msa0469350:CDS 35.0%
AAAAGAGCCTTTAGCTACTT+GGG + chr3_3:71165769-71165788 Msa0469350:CDS 35.0%
CAATTAAATCTAGTATGCGG+TGG + chr3_3:71165896-71165915 Msa0469350:intron 35.0%
GAATACTTACCAATGAGACA+AGG + chr3_3:71166008-71166027 Msa0469350:CDS 35.0%
TGATGAGCATGAATCTTGAT+AGG + chr3_3:71166427-71166446 Msa0469350:intron 35.0%
!! TTTTAAGTACATGGAACAGC+TGG + chr3_3:71166662-71166681 Msa0469350:CDS 35.0%
TTTAAGTACATGGAACAGCT+GGG + chr3_3:71166663-71166682 Msa0469350:CDS 35.0%
CAAAACATAACCAGTGGTTA+TGG - chr3_3:71166845-71166864 None:intergenic 35.0%
CATTAACAGAAACTAGACAG+TGG + chr3_3:71166974-71166993 Msa0469350:exon 35.0%
TTGTGAAAATGTATGCTAGG+TGG + chr3_3:71167130-71167149 Msa0469350:three_prime_UTR 35.0%
TAACACCATGAACACATTGT+CGG - chr3_3:71167266-71167285 None:intergenic 35.0%
GATCTCTGTTTCGAACATCA+AGG + chr3_3:71162479-71162498 Msa0469350:five_prime_UTR 40.0%
AACATCAAGGCGATCTAGTA+GGG + chr3_3:71162492-71162511 Msa0469350:five_prime_UTR 40.0%
GCGATCTAGTAGGGAAATAA+CGG + chr3_3:71162501-71162520 Msa0469350:five_prime_UTR 40.0%
TGGAATCGCAGTCCATTATT+CGG - chr3_3:71162690-71162709 None:intergenic 40.0%
! TTCCATTCACTGAGTTGAAC+CGG + chr3_3:71162705-71162724 Msa0469350:five_prime_UTR 40.0%
TGATCAATTCAACGCGCTTA+TGG + chr3_3:71162747-71162766 Msa0469350:exon 40.0%
GATCAATTCAACGCGCTTAT+GGG + chr3_3:71162748-71162767 Msa0469350:exon 40.0%
!! TTCTGGTTCTAAACTCGAGA+AGG + chr3_3:71162774-71162793 Msa0469350:CDS 40.0%
CCAAAGTAATGTTCTCCTTC+AGG - chr3_3:71162817-71162836 None:intergenic 40.0%
CCTGAAGGAGAACATTACTT+TGG + chr3_3:71162814-71162833 Msa0469350:CDS 40.0%
TACTTTGGCCTCGAGAATTT+CGG + chr3_3:71162829-71162848 Msa0469350:CDS 40.0%
! AAGTATTGCCGAAATTCTCG+AGG - chr3_3:71162840-71162859 None:intergenic 40.0%
! TTATTGCAACAGCGTTTTGC+AGG + chr3_3:71162861-71162880 Msa0469350:CDS 40.0%
GGCTACGTTGTTTGTGAATA+TGG + chr3_3:71163865-71163884 Msa0469350:intron 40.0%
GTCTAGAGAACTGGATCTAA+AGG - chr3_3:71164095-71164114 None:intergenic 40.0%
GATAGTGTAAAACACCACAC+TGG + chr3_3:71164160-71164179 Msa0469350:intron 40.0%
TAAAACACCACACTGGAACT+TGG + chr3_3:71164167-71164186 Msa0469350:intron 40.0%
! GGACATGACTAGTTACTTGT+AGG + chr3_3:71164288-71164307 Msa0469350:intron 40.0%
CCTGCAAATCCATTCTACAA+GGG - chr3_3:71164388-71164407 None:intergenic 40.0%
! TTGTAGAATGGATTTGCAGG+CGG + chr3_3:71164388-71164407 Msa0469350:intron 40.0%
! CTCAACCGAAAAGCACAAAA+AGG - chr3_3:71164551-71164570 None:intergenic 40.0%
! CTTTTTGTGCTTTTCGGTTG+AGG + chr3_3:71164549-71164568 Msa0469350:intron 40.0%
CAACCTCTGTACAAATCGTT+TGG - chr3_3:71164802-71164821 None:intergenic 40.0%
! GAACTTGATGGTTAGGATGA+TGG + chr3_3:71165180-71165199 Msa0469350:intron 40.0%
AAAGATCTCTCTACCTGAAC+CGG + chr3_3:71165269-71165288 Msa0469350:intron 40.0%
TTCTACAAATGTTCCGGTTC+AGG - chr3_3:71165285-71165304 None:intergenic 40.0%
ACGTAGATTGCATTTCTGAC+AGG - chr3_3:71165332-71165351 None:intergenic 40.0%
CAACCTCACTGAATGTGTTA+TGG - chr3_3:71165403-71165422 None:intergenic 40.0%
!!! TTGATCGTCTTTTTCAGCAC+GGG - chr3_3:71165684-71165703 None:intergenic 40.0%
!!! CTTGATCGTCTTTTTCAGCA+CGG - chr3_3:71165685-71165704 None:intergenic 40.0%
CCATTAGCTAAACCACTCTT+TGG - chr3_3:71165743-71165762 None:intergenic 40.0%
CCAAAGAGTGGTTTAGCTAA+TGG + chr3_3:71165740-71165759 Msa0469350:CDS 40.0%
TTGGGTGCACAAAAACTTTC+AGG + chr3_3:71165787-71165806 Msa0469350:CDS 40.0%
ATCTTTCTTGCAGCAAAGCT+TGG + chr3_3:71165841-71165860 Msa0469350:intron 40.0%
AATGTGAAACTGTTACCGCT+AGG + chr3_3:71166038-71166057 Msa0469350:CDS 40.0%
ATGTGAAACTGTTACCGCTA+GGG + chr3_3:71166039-71166058 Msa0469350:CDS 40.0%
TGATGAGCAAAGATGCCAAA+TGG + chr3_3:71166286-71166305 Msa0469350:intron 40.0%
ATCACTCAACCTGAGTTCAA+GGG - chr3_3:71166724-71166743 None:intergenic 40.0%
TATCACTCAACCTGAGTTCA+AGG - chr3_3:71166725-71166744 None:intergenic 40.0%
TTTGCAGTAGTTGTCCATGT+TGG + chr3_3:71166777-71166796 Msa0469350:CDS 40.0%
TTGCAGTAGTTGTCCATGTT+GGG + chr3_3:71166778-71166797 Msa0469350:CDS 40.0%
CTTCAGTGCAGACATTCTTT+GGG + chr3_3:71166895-71166914 Msa0469350:CDS 40.0%
AGCAGCTTGAATAGGGAAAA+TGG - chr3_3:71167079-71167098 None:intergenic 40.0%
TATACCTCCTGGAAAGGATA+CGG + chr3_3:71167107-71167126 Msa0469350:three_prime_UTR 40.0%
CGGTTGTGAAAATGTATGCT+AGG + chr3_3:71167127-71167146 Msa0469350:three_prime_UTR 40.0%
GAAAATGTATGCTAGGTGGT+TGG + chr3_3:71167134-71167153 Msa0469350:three_prime_UTR 40.0%
AGATACGACAGTATACATGC+TGG + chr3_3:71167230-71167249 Msa0469350:three_prime_UTR 40.0%
TTTCACCGACAATGTGTTCA+TGG + chr3_3:71167258-71167277 Msa0469350:three_prime_UTR 40.0%
GAACATCAAGGCGATCTAGT+AGG + chr3_3:71162491-71162510 Msa0469350:five_prime_UTR 45.0%
TAAATACGCGTACGTGTGTG+TGG + chr3_3:71162542-71162561 Msa0469350:five_prime_UTR 45.0%
AAATACGCGTACGTGTGTGT+GGG + chr3_3:71162543-71162562 Msa0469350:five_prime_UTR 45.0%
! GAAAACAAGGGTTTGGTTGC+AGG - chr3_3:71162639-71162658 None:intergenic 45.0%
TCTAAACTCGAGAAGGCTCT+CGG + chr3_3:71162781-71162800 Msa0469350:CDS 45.0%
AGGCCCTACAAAGAATTTGG+TGG - chr3_3:71163125-71163144 None:intergenic 45.0%
GAGAGGCCCTACAAAGAATT+TGG - chr3_3:71163128-71163147 None:intergenic 45.0%
! GGGACCTAATTGATGGTAAG+TGG + chr3_3:71163270-71163289 Msa0469350:intron 45.0%
CCTCATATGCAAGCAATGTC+AGG - chr3_3:71163789-71163808 None:intergenic 45.0%
CCTGACATTGCTTGCATATG+AGG + chr3_3:71163786-71163805 Msa0469350:intron 45.0%
ATGGAGATGGTCTAGAGAAC+TGG - chr3_3:71164104-71164123 None:intergenic 45.0%
! CCCTTGTAGAATGGATTTGC+AGG + chr3_3:71164385-71164404 Msa0469350:intron 45.0%
GCCTGCAAATCCATTCTACA+AGG - chr3_3:71164389-71164408 None:intergenic 45.0%
CTCCCAAACGATTTGTACAG+AGG + chr3_3:71164796-71164815 Msa0469350:CDS 45.0%
GTACCTGGTGCATATAGCTA+CGG - chr3_3:71164845-71164864 None:intergenic 45.0%
AGCTGAGAAGCAACTAAGCA+GGG - chr3_3:71165021-71165040 None:intergenic 45.0%
! TAGGATGATGGTTCACTAGC+TGG + chr3_3:71165192-71165211 Msa0469350:intron 45.0%
! AGGATGATGGTTCACTAGCT+GGG + chr3_3:71165193-71165212 Msa0469350:intron 45.0%
TGAGTTACCTTCACAGGTGA+AGG + chr3_3:71165471-71165490 Msa0469350:intron 45.0%
CGTGCTGAAAAAGACGATCA+AGG + chr3_3:71165683-71165702 Msa0469350:CDS 45.0%
CCATTCGCAATCTTCTCAGA+AGG - chr3_3:71165719-71165738 None:intergenic 45.0%
! CCTTCTGAGAAGATTGCGAA+TGG + chr3_3:71165716-71165735 Msa0469350:CDS 45.0%
ATTGCGAATGGACCAAAGAG+TGG + chr3_3:71165728-71165747 Msa0469350:CDS 45.0%
TTGTGCACCCAAGTAGCTAA+AGG - chr3_3:71165779-71165798 None:intergenic 45.0%
TTGCAAGCACCTTGTCTCAT+TGG - chr3_3:71166020-71166039 None:intergenic 45.0%
!! TTTTCTGTGACAAGTGCTGC+AGG + chr3_3:71166167-71166186 Msa0469350:CDS 45.0%
CAAGATTCATGCTCATCACG+TGG - chr3_3:71166425-71166444 None:intergenic 45.0%
GTTTGCAAGAAGCTCAGAAG+AGG + chr3_3:71166592-71166611 Msa0469350:intron 45.0%
AGATGAATGACCAAGACACG+TGG - chr3_3:71166636-71166655 None:intergenic 45.0%
GGTAAGACAGCTTCTTGTAG+CGG - chr3_3:71166689-71166708 None:intergenic 45.0%
GTTCAAGGGGAAAGACAACA+CGG - chr3_3:71166710-71166729 None:intergenic 45.0%
TTGTCTTTCCCCTTGAACTC+AGG + chr3_3:71166712-71166731 Msa0469350:CDS 45.0%
TCACTCAACCTGAGTTCAAG+GGG - chr3_3:71166723-71166742 None:intergenic 45.0%
TAGTTGTCCATGTTGGGAGT+GGG + chr3_3:71166784-71166803 Msa0469350:CDS 45.0%
CAGACATAATGTCCGTGGTT+GGG - chr3_3:71166810-71166829 None:intergenic 45.0%
CGTCGTCAAAACATAACCAG+TGG - chr3_3:71166851-71166870 None:intergenic 45.0%
! TTTTGACGACGAAACTGTCG+AGG + chr3_3:71166860-71166879 Msa0469350:CDS 45.0%
GCTTCAGTGCAGACATTCTT+TGG + chr3_3:71166894-71166913 Msa0469350:CDS 45.0%
ACAGAAACTAGACAGTGGAG+AGG + chr3_3:71166979-71166998 Msa0469350:exon 45.0%
TTCCCTATTCAAGCTGCTTG+AGG + chr3_3:71167081-71167100 Msa0469350:three_prime_UTR 45.0%
CACCTCAAGCAGCTTGAATA+GGG - chr3_3:71167086-71167105 None:intergenic 45.0%
ACACCTCAAGCAGCTTGAAT+AGG - chr3_3:71167087-71167106 None:intergenic 45.0%
! AGGTGTTATACCTCCTGGAA+AGG + chr3_3:71167101-71167120 Msa0469350:three_prime_UTR 45.0%
TTCACAACCGTATCCTTTCC+AGG - chr3_3:71167117-71167136 None:intergenic 45.0%
! GGGTTTGGTTGCAGGAGAAA+TGG - chr3_3:71162631-71162650 None:intergenic 50.0%
CTCCGGTTCAACTCAGTGAA+TGG - chr3_3:71162710-71162729 None:intergenic 50.0%
CAATTCAACGCGCTTATGGG+TGG + chr3_3:71162751-71162770 Msa0469350:exon 50.0%
CTCGGCGATAATTTCCCTGA+AGG + chr3_3:71162799-71162818 Msa0469350:CDS 50.0%
CTTTGTAGGGCCTCTCAAAC+AGG + chr3_3:71163132-71163151 Msa0469350:intron 50.0%
! AATGGTGGGACCTGTTTGAG+AGG - chr3_3:71163145-71163164 None:intergenic 50.0%
GTGTTTGCCAAGTTCCAGTG+TGG - chr3_3:71164177-71164196 None:intergenic 50.0%
! TAGAATGGATTTGCAGGCGG+TGG + chr3_3:71164391-71164410 Msa0469350:intron 50.0%
AGTTCCCAGAAGAGGAAGAC+AGG + chr3_3:71164765-71164784 Msa0469350:CDS 50.0%
CACACCTGTCTTCCTCTTCT+GGG - chr3_3:71164772-71164791 None:intergenic 50.0%
TCACACCTGTCTTCCTCTTC+TGG - chr3_3:71164773-71164792 None:intergenic 50.0%
CTTCCGTAGCTATATGCACC+AGG + chr3_3:71164839-71164858 Msa0469350:CDS 50.0%
CAGCTGAGAAGCAACTAAGC+AGG - chr3_3:71165022-71165041 None:intergenic 50.0%
ATGATGGTTCACTAGCTGGG+CGG + chr3_3:71165196-71165215 Msa0469350:intron 50.0%
GAAGGTAACTCAGACGAGGA+AGG - chr3_3:71165463-71165482 None:intergenic 50.0%
CTGTGAAGGTAACTCAGACG+AGG - chr3_3:71165467-71165486 None:intergenic 50.0%
CTCGTCTGAGTTACCTTCAC+AGG + chr3_3:71165465-71165484 Msa0469350:intron 50.0%
GGAATGACCTTCACCTGTGA+AGG - chr3_3:71165481-71165500 None:intergenic 50.0%
AAAGAGACCTCCACGTGTCT+TGG + chr3_3:71166623-71166642 Msa0469350:CDS 50.0%
TGAATGACCAAGACACGTGG+AGG - chr3_3:71166633-71166652 None:intergenic 50.0%
GTAGTTGTCCATGTTGGGAG+TGG + chr3_3:71166783-71166802 Msa0469350:CDS 50.0%
GCAGACATAATGTCCGTGGT+TGG - chr3_3:71166811-71166830 None:intergenic 50.0%
CAAGGCAGACATAATGTCCG+TGG - chr3_3:71166815-71166834 None:intergenic 50.0%
! TGGAGAGGCTGACGACTTTT+AGG + chr3_3:71166994-71167013 Msa0469350:three_prime_UTR 50.0%
! GCTTGAGGTGTTATACCTCC+TGG + chr3_3:71167096-71167115 Msa0469350:three_prime_UTR 50.0%
ACAACCGTATCCTTTCCAGG+AGG - chr3_3:71167114-71167133 None:intergenic 50.0%
AACGCGCTTATGGGTGGTTC+TGG + chr3_3:71162757-71162776 Msa0469350:exon 55.0%
CTAGCTGGGCGGTCAATAGA+AGG + chr3_3:71165207-71165226 Msa0469350:intron 55.0%
TGACGACGAAACTGTCGAGG+TGG + chr3_3:71166863-71166882 Msa0469350:CDS 55.0%
GGTTGGGCCCACTCCCAACA+TGG - chr3_3:71166794-71166813 None:intergenic 65.0%
GTTGGGAGTGGGCCCAACCA+CGG + chr3_3:71166795-71166814 Msa0469350:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 71162466 71167313 71162466 ID=Msa0469350;Name=Msa0469350
chr3_3 mRNA 71162466 71167313 71162466 ID=Msa0469350-mRNA-1;Parent=Msa0469350;Name=Msa0469350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=300|1|1|1|1|1|6|324|366
chr3_3 exon 71162466 71162882 71162466 ID=Msa0469350-mRNA-1:exon:17442;Parent=Msa0469350-mRNA-1
chr3_3 exon 71163643 71163759 71163643 ID=Msa0469350-mRNA-1:exon:17443;Parent=Msa0469350-mRNA-1
chr3_3 exon 71164762 71164860 71164762 ID=Msa0469350-mRNA-1:exon:17444;Parent=Msa0469350-mRNA-1
chr3_3 exon 71165620 71165808 71165620 ID=Msa0469350-mRNA-1:exon:17445;Parent=Msa0469350-mRNA-1
chr3_3 exon 71166007 71166188 71166007 ID=Msa0469350-mRNA-1:exon:17446;Parent=Msa0469350-mRNA-1
chr3_3 exon 71166593 71167313 71166593 ID=Msa0469350-mRNA-1:exon:17447;Parent=Msa0469350-mRNA-1
chr3_3 five_prime_UTR 71162466 71162765 71162466 ID=Msa0469350-mRNA-1:five_prime_utr;Parent=Msa0469350-mRNA-1
chr3_3 CDS 71162766 71162882 71162766 ID=Msa0469350-mRNA-1:cds;Parent=Msa0469350-mRNA-1
chr3_3 CDS 71163643 71163759 71163643 ID=Msa0469350-mRNA-1:cds;Parent=Msa0469350-mRNA-1
chr3_3 CDS 71164762 71164860 71164762 ID=Msa0469350-mRNA-1:cds;Parent=Msa0469350-mRNA-1
chr3_3 CDS 71165620 71165808 71165620 ID=Msa0469350-mRNA-1:cds;Parent=Msa0469350-mRNA-1
chr3_3 CDS 71166007 71166188 71166007 ID=Msa0469350-mRNA-1:cds;Parent=Msa0469350-mRNA-1
chr3_3 CDS 71166593 71166989 71166593 ID=Msa0469350-mRNA-1:cds;Parent=Msa0469350-mRNA-1
chr3_3 three_prime_UTR 71166990 71167313 71166990 ID=Msa0469350-mRNA-1:three_prime_utr;Parent=Msa0469350-mRNA-1
Gene Sequence

>Msa0469350

ATGGGTGGTTCTGGTTCTAAACTCGAGAAGGCTCTCGGCGATAATTTCCCTGAAGGAGAACATTACTTTGGCCTCGAGAATTTCGGCAATACTTGTTATTGCAACAGCGTTTTGCAGGCTCTATACTTCTGTGTTCCATTTCGAGAACAATTGCTACAATATTATGGAAAAAACAAAAACATAGCAGATGCAGAAGAAAATCTTTTGACTTGCTTAGCTGAACTATTTTCACAGATAAGTTCCCAGAAGAGGAAGACAGGTGTGATTGCTCCCAAACGATTTGTACAGAGGTTGAAAAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGACGCCCATGAGTTCTTGAACTATTTGTTAAATGAACTTGTTGACATTCTGGAGAGAGATGCCCGTGCTGAAAAAGACGATCAAGGTACATTACTACCTTCTGAGAAGATTGCGAATGGACCAAAGAGTGGTTTAGCTAATGGTACTAAAAAAGAGCCTTTAGCTACTTGGGTGCACAAAAACTTTCAGGGAATACTTACCAATGAGACAAGGTGCTTGCAATGTGAAACTGTTACCGCTAGGGATGAAATGTTTTTTGACTTGAGTCTTGATATTGAACAAAATAGTTCAATTACAAGTTGTTTGAAAAATTTCAGTTCAACTGAGACATTGAATGCAGAAGACAAATTTTTCTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAGACCTCCACGTGTCTTGGTCATTCATCTTAAGCGTTTTAAGTACATGGAACAGCTGGGCCGCTACAAGAAGCTGTCTTACCGTGTTGTCTTTCCCCTTGAACTCAGGTTGAGTGATACAGATGAAGAAGCAGATATCGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGGAGTGGGCCCAACCACGGACATTATGTCTGCCTTGTAAAAAACCATAACCACTGGTTATGTTTTGACGACGAAACTGTCGAGGTGGTTGATGAAGCTTCAGTGCAGACATTCTTTGGGTCGACACAAGACTTCAACAATAATACAGACCATGGTTACATTTTGTTTTACGAGAGCATTAACAGAAACTAG
Protein sequence

>Msa0469350

MGGSGSKLEKALGDNFPEGEHYFGLENFGNTCYCNSVLQALYFCVPFREQLLQYYGKNKNIADAEENLLTCLAELFSQISSQKRKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNELVDILERDARAEKDDQGTLLPSEKIANGPKSGLANGTKKEPLATWVHKNFQGILTNETRCLQCETVTARDEMFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKRPPRVLVIHLKRFKYMEQLGRYKKLSYRVVFPLELRLSDTDEEADIEYSLFAVVVHVGSGPNHGHYVCLVKNHNHWLCFDDETVEVVDEASVQTFFGSTQDFNNNTDHGYILFYESINRN*