AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0059070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0059070 MtrunA17_Chr1g0157791 82.069 290 43 3 1 281 1 290 1.18e-172 494
Msa0059070 MtrunA17_Chr1g0158191 60.797 301 89 7 1 281 1 292 3.29e-114 345
Msa0059070 MtrunA17_Chr1g0158151 64.912 285 82 7 1 270 1 282 5.25e-113 342
Msa0059070 MtrunA17_Chr1g0157961 63.793 290 77 8 1 268 1 284 2.33e-109 319
Msa0059070 MtrunA17_Chr1g0157991 65.517 261 72 5 26 268 27 287 1.67e-106 325
Msa0059070 MtrunA17_Chr1g0158041 62.914 302 84 10 1 281 1 295 2.20e-104 320
Msa0059070 MtrunA17_Chr1g0158061 57.554 278 99 6 18 284 20 289 4.83e-100 295
Msa0059070 MtrunA17_Chr1g0157911 42.905 296 144 8 3 276 10 302 3.12e-68 225
Msa0059070 MtrunA17_Chr3g0088331 44.398 241 121 5 18 250 27 262 3.30e-62 198
Msa0059070 MtrunA17_Chr1g0157861 40.000 300 124 8 32 276 40 338 1.61e-61 207
Msa0059070 MtrunA17_Chr1g0158461 40.000 300 136 9 6 270 24 314 1.75e-61 197
Msa0059070 MtrunA17_Chr1g0158731 44.635 233 123 4 6 233 12 243 4.18e-61 196
Msa0059070 MtrunA17_Chr1g0157881 38.944 303 129 8 3 250 26 327 3.04e-60 204
Msa0059070 MtrunA17_Chr1g0158331 42.279 272 132 8 1 250 17 285 1.97e-59 192
Msa0059070 MtrunA17_Chr1g0158411 43.404 235 122 3 6 233 23 253 1.71e-58 199
Msa0059070 MtrunA17_Chr6g0467711 43.609 266 123 7 8 255 21 277 4.36e-57 195
Msa0059070 MtrunA17_Chr1g0158661 45.353 269 118 10 35 286 37 293 8.20e-52 180
Msa0059070 MtrunA17_Chr1g0158121 67.769 121 37 1 1 119 1 121 1.04e-48 159
Msa0059070 MtrunA17_Chr1g0158631 47.032 219 86 7 35 229 37 249 6.99e-46 164
Msa0059070 MtrunA17_Chr1g0158761 39.592 245 127 7 6 250 13 236 4.67e-43 156
Msa0059070 MtrunA17_Chr1g0158541 36.090 266 146 11 8 255 17 276 8.23e-41 150
Msa0059070 MtrunA17_Chr1g0158301 35.772 246 137 10 25 255 35 274 2.57e-36 137
Msa0059070 MtrunA17_Chr1g0158131 56.701 97 39 1 175 268 1 97 9.46e-30 116
Msa0059070 MtrunA17_Chr1g0157811 54.630 108 43 3 175 281 1 103 4.60e-28 113
Msa0059070 MtrunA17_Chr1g0160701 35.514 214 125 7 27 230 39 249 7.64e-25 104
Msa0059070 MtrunA17_Chr1g0160661 33.725 255 145 12 27 273 50 288 1.51e-23 100
Msa0059070 MtrunA17_Chr1g0160711 34.091 220 122 11 26 230 20 231 6.35e-23 98.6
Msa0059070 MtrunA17_Chr1g0160721 36.150 213 117 10 27 231 35 236 7.34e-23 98.6
Msa0059070 MtrunA17_Chr1g0160761 31.020 245 141 9 1 230 4 235 2.18e-21 94.4
Msa0059070 MtrunA17_Chr1g0160561 33.645 214 118 9 37 231 37 245 3.95e-19 87.4
Msa0059070 MtrunA17_Chr1g0157931 31.638 177 83 6 137 276 1 176 1.00e-17 83.2
Msa0059070 MtrunA17_Chr1g0158501 31.757 148 60 6 150 267 75 211 2.71e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 152 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAACTTTACTTTCCTTTA+TGG 0.074860 1_2:+15743638 Msa0059070:three_prime_UTR
TTCGTTTCTGCCATAATTTC+TGG 0.092423 1_2:+15739925 Msa0059070:CDS
AGGCTTTGGCACTGTGTTTA+AGG 0.143020 1_2:+15743033 Msa0059070:three_prime_UTR
AACATTATTACATATTAATT+AGG 0.167194 1_2:-15744114 None:intergenic
AAAACCACATTTCTAAATTT+AGG 0.193924 1_2:-15740683 None:intergenic
TTATGGATTTATGATCAATT+TGG 0.223578 1_2:+15743655 Msa0059070:three_prime_UTR
GCTATAAACATCGGCCTTAT+AGG 0.227896 1_2:-15743548 None:intergenic
TTGAATGTGGTGCAATTAAT+TGG 0.231001 1_2:+15743163 Msa0059070:three_prime_UTR
AATGCTCCGCTTGGGCATTT+AGG 0.256112 1_2:-15743612 None:intergenic
TGATGGAGATGGCAAGTAAA+AGG 0.288769 1_2:+15743584 Msa0059070:three_prime_UTR
GGATTACTTGAAATGATTAA+AGG 0.297220 1_2:+15742740 Msa0059070:intron
TTGCAGCTAGATTTCTGTTT+GGG 0.302420 1_2:+15742840 Msa0059070:three_prime_UTR
AAGGCCGATGTTTATAGCTT+TGG 0.317057 1_2:+15743553 Msa0059070:three_prime_UTR
CTCATTGAGGGGCGATCATC+TGG 0.317280 1_2:-15743775 None:intergenic
TGTTAGGTGTTCGAGGGATA+TGG 0.318709 1_2:+15740618 Msa0059070:intron
ACATTATTACATATTAATTA+GGG 0.319462 1_2:-15744113 None:intergenic
TGTGTAATTGTTGTAGTTGA+TGG 0.319864 1_2:-15739421 None:intergenic
ACTCCAAAAGTCTCTGACTT+TGG 0.320180 1_2:+15743415 Msa0059070:three_prime_UTR
TATGATTGTCTCTTACTTGA+TGG 0.321908 1_2:-15739614 None:intergenic
GATCTCCTCCCCAGAAATTA+TGG 0.324260 1_2:-15739935 None:intergenic
AATCCAAAGTCAGAGACTTT+TGG 0.327569 1_2:-15743418 None:intergenic
AGTTGGTTGTCATGTGAAAT+TGG 0.328105 1_2:+15739728 Msa0059070:CDS
TCTATGGATTTGATATTTCA+TGG 0.334116 1_2:+15739823 Msa0059070:CDS
AGGCCGATGTTTATAGCTTT+GGG 0.339884 1_2:+15743554 Msa0059070:three_prime_UTR
GGTGATGCAGAGTATATAAT+AGG 0.340687 1_2:+15742782 Msa0059070:three_prime_UTR
AATTGGTTACTCCAACTTCT+TGG 0.347039 1_2:+15739745 Msa0059070:CDS
AAGAGGTACCATTGGATATA+TGG 0.350856 1_2:+15743489 Msa0059070:three_prime_UTR
TCGTTTCTGCCATAATTTCT+GGG 0.358478 1_2:+15739926 Msa0059070:CDS
TGCGGATAAAGCGTTGGCTT+TGG 0.376171 1_2:-15743847 None:intergenic
GGCTTTGGCACTGTGTTTAA+GGG 0.378605 1_2:+15743034 Msa0059070:three_prime_UTR
CAACTGTGAACCTATCTATA+TGG 0.383452 1_2:+15744148 Msa0059070:three_prime_UTR
TTTGCAGCTAGATTTCTGTT+TGG 0.383696 1_2:+15742839 Msa0059070:three_prime_UTR
ATACTTCTTCCTGTGTCAAT+TGG 0.383819 1_2:+15739646 Msa0059070:CDS
CGACATTGTTCGGTCATAGT+TGG 0.385979 1_2:-15743896 None:intergenic
GAGAACAATCTCATGCCTAT+TGG 0.389340 1_2:+15742950 Msa0059070:three_prime_UTR
GATTACTTGAAATGATTAAA+GGG 0.393168 1_2:+15742741 Msa0059070:exon
CTGCTGTTACCGCAATGAAT+TGG 0.397102 1_2:-15739330 None:intergenic
TAATTTCTGGGGAGGAGATC+CGG 0.397935 1_2:+15739938 Msa0059070:CDS
CTCCACTACTTTGCTCATTG+AGG 0.402510 1_2:-15743788 None:intergenic
ATGCACAAAGCATTAGTCTA+TGG 0.403014 1_2:+15739807 Msa0059070:CDS
TCCACTACTTTGCTCATTGA+GGG 0.403776 1_2:-15743787 None:intergenic
CCTCCTACTGTGGCTTGGTA+TGG 0.409721 1_2:-15739543 None:intergenic
AGAGGTTTCAAAGACAAGTT+AGG 0.413468 1_2:+15743004 Msa0059070:three_prime_UTR
TCTTTGTATGAATATCCAAT+AGG 0.417086 1_2:-15742965 None:intergenic
TCCATAAAGGAAAGTAAAGT+TGG 0.422236 1_2:-15743639 None:intergenic
AATTGATCATAAATCCATAA+AGG 0.423106 1_2:-15743652 None:intergenic
TCTTACATTTAGCGTATAAA+CGG 0.424125 1_2:-15740649 None:intergenic
TGCTTTGTGCATGATATCAT+AGG 0.435028 1_2:-15739796 None:intergenic
TACTTGATTTCTTTGCAAAC+CGG 0.435798 1_2:-15739769 None:intergenic
CTTCCTTGTAAGAATCTTTG+TGG 0.437483 1_2:+15739852 Msa0059070:CDS
CTACCTTGTAGATGCAGAAA+TGG 0.438527 1_2:-15739210 None:intergenic
AACATATATATAATACCCTT+TGG 0.440332 1_2:-15739673 None:intergenic
CAGAAATCTAGCTGCAAAGA+AGG 0.440463 1_2:-15742834 None:intergenic
TTGCCTTGTTGATATTCAAA+TGG 0.448278 1_2:+15742876 Msa0059070:three_prime_UTR
TTGGGTAAGGCAAAAGGTAA+TGG 0.450273 1_2:+15743094 Msa0059070:three_prime_UTR
AAGTTAGGTGAAGGAGGCTT+TGG 0.451134 1_2:+15743019 Msa0059070:three_prime_UTR
TTTCTCAGTGGTAAAGTTGA+AGG 0.454643 1_2:-15739892 None:intergenic
TTGGCTTTGGAGGCATTTCA+AGG 0.458082 1_2:-15743834 None:intergenic
TTCCTTGTAAGAATCTTTGT+GGG 0.461145 1_2:+15739853 Msa0059070:CDS
AAGTTGAAGGAACAGTAGTC+TGG 0.468698 1_2:-15739879 None:intergenic
GTTACTCCAACTTCTTGGTC+CGG 0.469084 1_2:+15739750 Msa0059070:CDS
AAATTTATCAAGAGATCCAT+TGG 0.471926 1_2:-15743233 None:intergenic
AATCATCGCTCGACATTGTT+CGG 0.475285 1_2:-15743906 None:intergenic
CTGCCATTTCTGCATCTACA+AGG 0.478638 1_2:+15739207 Msa0059070:CDS
CTTCCATTGTTAGGTGTTCG+AGG 0.478760 1_2:+15740611 Msa0059070:intron
AACGCTTTATCCGCATGAAA+CGG 0.479287 1_2:+15743855 Msa0059070:three_prime_UTR
CAATTAGATTGTTGAACTCC+AGG 0.480248 1_2:-15739459 None:intergenic
AGGGTATTATATATATGTTA+TGG 0.481535 1_2:+15739677 Msa0059070:CDS
ATGATTGTCTCTTACTTGAT+GGG 0.484590 1_2:-15739613 None:intergenic
TTGGCTTGAATGCTCCGCTT+GGG 0.486985 1_2:-15743620 None:intergenic
ACAATCAGACTGGTTGATCC+TGG 0.487680 1_2:+15739441 Msa0059070:CDS
GGATAAAGCGTTGGCTTTGG+AGG 0.487764 1_2:-15743844 None:intergenic
TGCTAAATTACCATATAGAT+AGG 0.488293 1_2:-15744158 None:intergenic
AAATCTTCATTTCGCATCCA+TGG 0.492702 1_2:-15743345 None:intergenic
GATCTCCTCCTACTGTGGCT+TGG 0.492852 1_2:-15739548 None:intergenic
GTGACAATGCTATTCTCTAC+AGG 0.495280 1_2:-15743454 None:intergenic
TGGGTAAGGCAAAAGGTAAT+GGG 0.495958 1_2:+15743095 Msa0059070:three_prime_UTR
AATTTCTGGGGAGGAGATCC+GGG 0.498970 1_2:+15739939 Msa0059070:CDS
GTTGGCTTGAATGCTCCGCT+TGG 0.500331 1_2:-15743621 None:intergenic
TGCAAACCGGACCAAGAAGT+TGG 0.500979 1_2:-15739756 None:intergenic
GAGCAAAGTAGTGGAGATGC+TGG 0.504021 1_2:+15743795 Msa0059070:three_prime_UTR
AAGATGTTGGGTAAGGCAAA+AGG 0.505076 1_2:+15743088 Msa0059070:three_prime_UTR
CAATTCATTGCGGTAACAGC+AGG 0.506278 1_2:+15739331 Msa0059070:CDS
AAAAGTCTCTGACTTTGGAT+TGG 0.508062 1_2:+15743420 Msa0059070:three_prime_UTR
ATACAAAGAAATCAAGAAGA+TGG 0.509913 1_2:+15742979 Msa0059070:three_prime_UTR
GTTTATGAATTCATGCCCAA+TGG 0.512268 1_2:+15743217 Msa0059070:three_prime_UTR
ACTTGTCTACCTTCCTCTTG+TGG 0.514002 1_2:+15739264 Msa0059070:CDS
TTCCATTGTTAGGTGTTCGA+GGG 0.515614 1_2:+15740612 Msa0059070:intron
TTCAAAGACAAGTTAGGTGA+AGG 0.519939 1_2:+15743010 Msa0059070:three_prime_UTR
CCTTGTTGATATTCAAATGG+AGG 0.522716 1_2:+15742879 Msa0059070:three_prime_UTR
GAGTGAAGTTCTCGTCAAGA+AGG 0.534004 1_2:-15743396 None:intergenic
TATGATCAATTTGGACAAGA+GGG 0.540900 1_2:+15743664 Msa0059070:three_prime_UTR
GTGGTGGATGAGAATGATAT+TGG 0.544228 1_2:+15739176 Msa0059070:CDS
ATTGGGATCTCCTCCTACTG+TGG 0.545305 1_2:-15739553 None:intergenic
GTGTCAATTGGCACTCCAAA+GGG 0.547964 1_2:+15739658 Msa0059070:CDS
TTCTGCCATAATTTCTGGGG+AGG 0.549288 1_2:+15739930 Msa0059070:CDS
TATTATATATATGTTATGGC+TGG 0.551877 1_2:+15739681 Msa0059070:CDS
TGTGTCAATTGGCACTCCAA+AGG 0.556289 1_2:+15739657 Msa0059070:CDS
GGCAATCAAGATGTTGGGTA+AGG 0.556942 1_2:+15743081 Msa0059070:three_prime_UTR
TTGTGTGGCAATCAAGATGT+TGG 0.564999 1_2:+15743075 Msa0059070:three_prime_UTR
AAAGACAAGTTAGGTGAAGG+AGG 0.566717 1_2:+15743013 Msa0059070:three_prime_UTR
AGATGATCATAGTCGCACTT+TGG 0.568695 1_2:+15743737 Msa0059070:three_prime_UTR
CGTTTCTGCCATAATTTCTG+GGG 0.570126 1_2:+15739927 Msa0059070:CDS
CATTCTCATCCACCACATAG+TGG 0.570700 1_2:-15739169 None:intergenic
ACTGCGGCAAGAGGTACCAT+TGG 0.576430 1_2:+15743481 Msa0059070:three_prime_UTR
CCTCCATTTGAATATCAACA+AGG 0.576818 1_2:-15742879 None:intergenic
CATTCGATGTAGAACACAGT+GGG 0.580365 1_2:-15744062 None:intergenic
AATTTATCAAGAGATCCATT+GGG 0.580646 1_2:-15743232 None:intergenic
CAAATGATGTATCCTTCCGA+TGG 0.580655 1_2:-15743143 None:intergenic
CCATACCAAGCCACAGTAGG+AGG 0.581069 1_2:+15739543 Msa0059070:CDS
TTATGATCAATTTGGACAAG+AGG 0.581180 1_2:+15743663 Msa0059070:three_prime_UTR
ATTAGTGAAGTCGCAACCAT+CGG 0.582218 1_2:+15743127 Msa0059070:three_prime_UTR
AACATCTTGATTGCCACACA+AGG 0.585579 1_2:-15743073 None:intergenic
TGTGTGGCAATCAAGATGTT+GGG 0.595841 1_2:+15743076 Msa0059070:three_prime_UTR
CAACAATTACACAATCAGAC+TGG 0.598755 1_2:+15739431 Msa0059070:CDS
GTTTCATGCGGATAAAGCGT+TGG 0.600170 1_2:-15743853 None:intergenic
TAGCTGCAAAGAAGGATGGT+AGG 0.601172 1_2:-15742826 None:intergenic
TCCTTGTAAGAATCTTTGTG+GGG 0.601545 1_2:+15739854 Msa0059070:CDS
AAAGTAGTGGAGATGCTGGA+AGG 0.602910 1_2:+15743799 Msa0059070:three_prime_UTR
AATCTAGCTGCAAAGAAGGA+TGG 0.607068 1_2:-15742830 None:intergenic
GTCACAATGACTGCGGCAAG+AGG 0.607593 1_2:+15743472 Msa0059070:three_prime_UTR
CCCCTCAATGAGCAAAGTAG+TGG 0.607744 1_2:+15743786 Msa0059070:three_prime_UTR
AATAGAAGATGTCACAGAGG+AGG 0.608245 1_2:+15743696 Msa0059070:three_prime_UTR
CCTACGTAGCGGTCCTTGTG+TGG 0.609350 1_2:+15743060 Msa0059070:three_prime_UTR
TCCCCACAAAGATTCTTACA+AGG 0.615733 1_2:-15739855 None:intergenic
GTGAAGTCGCAACCATCGGA+AGG 0.619522 1_2:+15743131 Msa0059070:three_prime_UTR
ACAACAGTTTCGCCACTATG+TGG 0.620790 1_2:+15739157 Msa0059070:exon
CCACTACTTTGCTCATTGAG+GGG 0.622763 1_2:-15743786 None:intergenic
TTTGGAGTGCCAATTGACAC+AGG 0.623545 1_2:-15739655 None:intergenic
CTCAGGAGCCATATATCCAA+TGG 0.624853 1_2:-15743497 None:intergenic
ATATCGGTTGGAGTAGCTCG+TGG 0.638540 1_2:+15743307 Msa0059070:three_prime_UTR
GAAATCAAGAAGATGGCTAG+AGG 0.641252 1_2:+15742986 Msa0059070:three_prime_UTR
GGGATTGCTTATCTCCACCA+TGG 0.641481 1_2:+15743328 Msa0059070:three_prime_UTR
CATCCCAAAGCTATAAACAT+CGG 0.644640 1_2:-15743557 None:intergenic
AAGGATACATCATTTGAATG+TGG 0.644656 1_2:+15743150 Msa0059070:three_prime_UTR
TATCGGTTGGAGTAGCTCGT+GGG 0.645747 1_2:+15743308 Msa0059070:three_prime_UTR
GATCCATACCAAGCCACAGT+AGG 0.649940 1_2:+15739540 Msa0059070:CDS
CCACACAAGGACCGCTACGT+AGG 0.655536 1_2:-15743060 None:intergenic
ACAGTTTCGCCACTATGTGG+TGG 0.662476 1_2:+15739160 Msa0059070:exon
TCGTCTACAACCGTTTCATG+CGG 0.662778 1_2:-15743865 None:intergenic
TCGTCAAGAAGGATGTTGTG+AGG 0.664204 1_2:-15743385 None:intergenic
TCTTCATTTCGCATCCATGG+TGG 0.666723 1_2:-15743342 None:intergenic
AAAGATGATCCAATTCATTG+CGG 0.670718 1_2:+15739321 Msa0059070:CDS
TATATAATAGGATTACGCAC+AGG 0.671654 1_2:+15742794 Msa0059070:three_prime_UTR
AGAAATAGAAGATGTCACAG+AGG 0.685726 1_2:+15743693 Msa0059070:three_prime_UTR
GATCGAGACAAGAAATAACG+AGG 0.705984 1_2:-15739492 None:intergenic
AAAGCATTGAAGTTTCTCAG+TGG 0.714937 1_2:-15739904 None:intergenic
TTCGATGTAGAACACAGTGG+GGG 0.723055 1_2:-15744060 None:intergenic
TAGCATTGTCACAATGACTG+CGG 0.724852 1_2:+15743465 Msa0059070:three_prime_UTR
ATTCGATGTAGAACACAGTG+GGG 0.728413 1_2:-15744061 None:intergenic
TTTAAGGGAAACCTACGTAG+CGG 0.742705 1_2:+15743049 Msa0059070:three_prime_UTR
ACATTCGATGTAGAACACAG+TGG 0.750279 1_2:-15744063 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATAAATTAATAAAAAA+AGG + chr1_2:15740765-15740784 Msa0059070:intron 0.0%
!!! TATCATCATAATTTTTTTAT+GGG - chr1_2:15740961-15740980 None:intergenic 10.0%
!!! ATATCATCATAATTTTTTTA+TGG - chr1_2:15740962-15740981 None:intergenic 10.0%
!!! TAAAAATATATTTTATATGG+TGG - chr1_2:15741360-15741379 None:intergenic 10.0%
!!! ACCATATAAAATATATTTTT+AGG + chr1_2:15741359-15741378 Msa0059070:intron 10.0%
!!! ACCTAAAAATATATTTTATA+TGG - chr1_2:15741363-15741382 None:intergenic 10.0%
!!! TATAAAATATATTTTTAGGT+AGG + chr1_2:15741363-15741382 Msa0059070:intron 10.0%
!!! AAAAAATACTTTACTTATTT+TGG - chr1_2:15741606-15741625 None:intergenic 10.0%
!! TGTATATTATTAGAAAAATA+CGG + chr1_2:15741868-15741887 Msa0059070:intron 10.0%
!! TGTATATTATTAGAAAAATA+AGG + chr1_2:15741868-15741887 Msa0059070:intron 10.0%
!! ACATTATTACATATTAATTA+GGG - chr1_2:15744116-15744135 None:intergenic 10.0%
!! AACATTATTACATATTAATT+AGG - chr1_2:15744117-15744136 None:intergenic 10.0%
!!! GCAATTAAATTTTTTAACTA+AGG - chr1_2:15740037-15740056 None:intergenic 15.0%
!! TTGACGAAATTAAAAATTTA+AGG + chr1_2:15740350-15740369 Msa0059070:intron 15.0%
!! TGACGAAATTAAAAATTTAA+GGG + chr1_2:15740351-15740370 Msa0059070:intron 15.0%
!! TTTATTATGATATGATGATT+AGG - chr1_2:15740571-15740590 None:intergenic 15.0%
!!! TTGAATGGTTTTTTTTTTTT+TGG + chr1_2:15740991-15741010 Msa0059070:intron 15.0%
!!! TGAATGGTTTTTTTTTTTTT+GGG + chr1_2:15740992-15741011 Msa0059070:intron 15.0%
!!! ACTTTAAAACTTTCTTTTTT+AGG + chr1_2:15741114-15741133 Msa0059070:intron 15.0%
!!! TTTTTACTTATAATAATGAC+CGG - chr1_2:15741187-15741206 None:intergenic 15.0%
!! TAAGTAAAAAACAATATTGT+AGG + chr1_2:15741197-15741216 Msa0059070:intron 15.0%
!!! AAATCCAACTTATATTTTTA+AGG + chr1_2:15741455-15741474 Msa0059070:intron 15.0%
!!! AATCCAACTTATATTTTTAA+GGG + chr1_2:15741456-15741475 Msa0059070:intron 15.0%
!!! AAATCCAAGTTATATTTTTA+AGG + chr1_2:15741541-15741560 Msa0059070:intron 15.0%
!! ATGATTTAGTATATAACAAT+GGG - chr1_2:15742152-15742171 None:intergenic 15.0%
!! AATGATTTAGTATATAACAA+TGG - chr1_2:15742153-15742172 None:intergenic 15.0%
!!! TGATTTTTTTTCAAGAATAT+AGG + chr1_2:15742293-15742312 Msa0059070:intron 15.0%
!! ATAAGATGAAATGTTAATTA+AGG + chr1_2:15742519-15742538 Msa0059070:intron 15.0%
!!! TTTTTTTTTGAGTAATTGAA+AGG + chr1_2:15742629-15742648 Msa0059070:intron 15.0%
!!! AAATTTATTTTCTCTAAAGA+AGG + chr1_2:15743250-15743269 Msa0059070:three_prime_UTR 15.0%
!! AGTTGTTCTATAAAAATATA+GGG + chr1_2:15743518-15743537 Msa0059070:three_prime_UTR 15.0%
!! AACATATATATAATACCCTT+TGG - chr1_2:15739676-15739695 None:intergenic 20.0%
!!! AGGGTATTATATATATGTTA+TGG + chr1_2:15739677-15739696 Msa0059070:CDS 20.0%
!! TATTATATATATGTTATGGC+TGG + chr1_2:15739681-15739700 Msa0059070:CDS 20.0%
!!! AAATTTTTTAACTAAGGTGA+AGG - chr1_2:15740031-15740050 None:intergenic 20.0%
!! ATCAAAACTTAAGTTTCATT+AGG - chr1_2:15740123-15740142 None:intergenic 20.0%
!! AAAACCACATTTCTAAATTT+AGG - chr1_2:15740686-15740705 None:intergenic 20.0%
!!! TTTAGAAATGTGGTTTTTTA+TGG + chr1_2:15740689-15740708 Msa0059070:intron 20.0%
!!! TAAATATAGCAATTTTGCAT+TGG - chr1_2:15740898-15740917 None:intergenic 20.0%
!! AATGCAAAATTGCTATATTT+AGG + chr1_2:15740897-15740916 Msa0059070:intron 20.0%
!! TGATATGATATCATATTGAA+TGG + chr1_2:15740976-15740995 Msa0059070:intron 20.0%
!!! ATAAGCAAAAATCAACATTT+TGG - chr1_2:15741287-15741306 None:intergenic 20.0%
!! CTTAAAAGTAAGACAATTAT+AGG + chr1_2:15741431-15741450 Msa0059070:intron 20.0%
!!! ATCCAACTTATATTTTTAAG+GGG + chr1_2:15741457-15741476 Msa0059070:intron 20.0%
!! TTCTCCTTAAAAATATAACT+TGG - chr1_2:15741548-15741567 None:intergenic 20.0%
!!! ATAATTGCACATTTTCAAAT+GGG + chr1_2:15741972-15741991 Msa0059070:intron 20.0%
!! ATTAACTCAAGTGAATAAAA+GGG - chr1_2:15742192-15742211 None:intergenic 20.0%
!! AATTAACTCAAGTGAATAAA+AGG - chr1_2:15742193-15742212 None:intergenic 20.0%
!! ATATATAGCAGCAAAAATTT+AGG - chr1_2:15742692-15742711 None:intergenic 20.0%
!!! TGCTATATATCTATTTTTCT+TGG + chr1_2:15742702-15742721 Msa0059070:intron 20.0%
!! GATTACTTGAAATGATTAAA+GGG + chr1_2:15742741-15742760 Msa0059070:exon 20.0%
!!! TAGCCAAATTTTTGAAATAT+CGG + chr1_2:15743291-15743310 Msa0059070:three_prime_UTR 20.0%
!!! ATATTTTTATAGAACAACTC+AGG - chr1_2:15743517-15743536 None:intergenic 20.0%
!! GAGTTGTTCTATAAAAATAT+AGG + chr1_2:15743517-15743536 Msa0059070:three_prime_UTR 20.0%
!! GTTGTTCTATAAAAATATAG+GGG + chr1_2:15743519-15743538 Msa0059070:three_prime_UTR 20.0%
!! TTGTTCTATAAAAATATAGG+GGG + chr1_2:15743520-15743539 Msa0059070:three_prime_UTR 20.0%
!! AATTGATCATAAATCCATAA+AGG - chr1_2:15743655-15743674 None:intergenic 20.0%
!! TTATGGATTTATGATCAATT+TGG + chr1_2:15743655-15743674 Msa0059070:three_prime_UTR 20.0%
!! GATCATCTTTTAATCGAAAT+GGG - chr1_2:15739311-15739330 None:intergenic 25.0%
! AACTATATGCTCAAAAAGAA+GGG - chr1_2:15739580-15739599 None:intergenic 25.0%
! AAACTATATGCTCAAAAAGA+AGG - chr1_2:15739581-15739600 None:intergenic 25.0%
! TCTATGGATTTGATATTTCA+TGG + chr1_2:15739823-15739842 Msa0059070:CDS 25.0%
! AAATATTCTGCAATAGTAAG+AGG - chr1_2:15740304-15740323 None:intergenic 25.0%
! AGGGTGTGTATATATATATA+TGG + chr1_2:15740370-15740389 Msa0059070:intron 25.0%
! TCTTACATTTAGCGTATAAA+CGG - chr1_2:15740652-15740671 None:intergenic 25.0%
! ATCACCTAAATTTAGAAATG+TGG + chr1_2:15740679-15740698 Msa0059070:intron 25.0%
! CATTCATTTAATGATGTATG+TGG - chr1_2:15741222-15741241 None:intergenic 25.0%
! TTCCCCTTAAAAATATAAGT+TGG - chr1_2:15741462-15741481 None:intergenic 25.0%
! AATGTTAAACAATGTCATCA+GGG + chr1_2:15741480-15741499 Msa0059070:intron 25.0%
! CTTAAAAGTAAGACAACTAT+AGG + chr1_2:15741517-15741536 Msa0059070:intron 25.0%
! AAATAAGGTCAAAGTAAGTT+AGG + chr1_2:15741947-15741966 Msa0059070:intron 25.0%
!! CATAATTGCACATTTTCAAA+TGG + chr1_2:15741971-15741990 Msa0059070:intron 25.0%
!!! AAAAACACCAGGTTTATTTT+AGG + chr1_2:15742321-15742340 Msa0059070:intron 25.0%
! AATTTCTCCTAAAATAAACC+TGG - chr1_2:15742331-15742350 None:intergenic 25.0%
! TTTCAAGAGAAAATTAGAGT+TGG - chr1_2:15742355-15742374 None:intergenic 25.0%
!! CTCTAATTTTCTCTTGAAAT+CGG + chr1_2:15742356-15742375 Msa0059070:intron 25.0%
!! CATTTTTACAGAATAAGAGA+TGG - chr1_2:15742412-15742431 None:intergenic 25.0%
! GGATTACTTGAAATGATTAA+AGG + chr1_2:15742740-15742759 Msa0059070:intron 25.0%
!!! TCACCTTCATATTTTTTGTT+TGG - chr1_2:15742767-15742786 None:intergenic 25.0%
! TCTTTGTATGAATATCCAAT+AGG - chr1_2:15742968-15742987 None:intergenic 25.0%
! ATACAAAGAAATCAAGAAGA+TGG + chr1_2:15742979-15742998 Msa0059070:three_prime_UTR 25.0%
! AATTTATCAAGAGATCCATT+GGG - chr1_2:15743235-15743254 None:intergenic 25.0%
! AAATTTATCAAGAGATCCAT+TGG - chr1_2:15743236-15743255 None:intergenic 25.0%
! CAACCGATATTTCAAAAATT+TGG - chr1_2:15743297-15743316 None:intergenic 25.0%
!!! CAAATTTTTGAAATATCGGT+TGG + chr1_2:15743295-15743314 Msa0059070:three_prime_UTR 25.0%
! TTTTGATATTTTGCCACAAG+AGG - chr1_2:15739280-15739299 None:intergenic 30.0%
! GGATCATCTTTTAATCGAAA+TGG - chr1_2:15739312-15739331 None:intergenic 30.0%
AAAGATGATCCAATTCATTG+CGG + chr1_2:15739321-15739340 Msa0059070:CDS 30.0%
TGTGTAATTGTTGTAGTTGA+TGG - chr1_2:15739424-15739443 None:intergenic 30.0%
ATGATTGTCTCTTACTTGAT+GGG - chr1_2:15739616-15739635 None:intergenic 30.0%
TATGATTGTCTCTTACTTGA+TGG - chr1_2:15739617-15739636 None:intergenic 30.0%
!!! ATTGCTCAAGATTTTCAAGT+TGG + chr1_2:15739711-15739730 Msa0059070:CDS 30.0%
TACTTGATTTCTTTGCAAAC+CGG - chr1_2:15739772-15739791 None:intergenic 30.0%
TTCCTTGTAAGAATCTTTGT+GGG + chr1_2:15739853-15739872 Msa0059070:CDS 30.0%
!! AAAACAAACTTGCTAACAAG+TGG + chr1_2:15740077-15740096 Msa0059070:intron 30.0%
!! AAACAAACTTGCTAACAAGT+GGG + chr1_2:15740078-15740097 Msa0059070:intron 30.0%
! GTCTAAAATAAGCGATAATG+TGG - chr1_2:15740282-15740301 None:intergenic 30.0%
! TGACATTTTCTTCCATTGTT+AGG + chr1_2:15740602-15740621 Msa0059070:intron 30.0%
ATCGCAATTTAGTTGAGTAT+AGG + chr1_2:15740725-15740744 Msa0059070:intron 30.0%
AAATGTTAACCAGTGTCTTT+AGG + chr1_2:15741015-15741034 Msa0059070:intron 30.0%
AATGTTAACCAGTGTCTTTA+GGG + chr1_2:15741016-15741035 Msa0059070:intron 30.0%
!! TAGGGAATCAAGTATTGAAT+TGG + chr1_2:15741046-15741065 Msa0059070:intron 30.0%
! TTTTTGCTTATAACAGTGAC+CGG + chr1_2:15741296-15741315 Msa0059070:intron 30.0%
CTCTTTCTTTCTCAAAAGTT+TGG - chr1_2:15741402-15741421 None:intergenic 30.0%
!! ACTTTTGAGAAAGAAAGAGT+AGG + chr1_2:15741403-15741422 Msa0059070:intron 30.0%
GAATGTTAAACAATGTCATC+AGG + chr1_2:15741479-15741498 Msa0059070:intron 30.0%
AATGCTAAACAATGTCATCA+GGG + chr1_2:15741566-15741585 Msa0059070:intron 30.0%
TCAACTGTGTCAAGTATTAT+GGG - chr1_2:15741710-15741729 None:intergenic 30.0%
TATAGGAAAGAAAAAACACC+AGG + chr1_2:15742310-15742329 Msa0059070:intron 30.0%
CTTGAAATCGGAGTATATAA+AGG + chr1_2:15742368-15742387 Msa0059070:intron 30.0%
! TCTTGGTGATTATATGTTAC+AGG + chr1_2:15742719-15742738 Msa0059070:intron 30.0%
TATATAATAGGATTACGCAC+AGG + chr1_2:15742794-15742813 Msa0059070:three_prime_UTR 30.0%
! TTGCCTTGTTGATATTCAAA+TGG + chr1_2:15742876-15742895 Msa0059070:three_prime_UTR 30.0%
AAGGATACATCATTTGAATG+TGG + chr1_2:15743150-15743169 Msa0059070:three_prime_UTR 30.0%
TTGAATGTGGTGCAATTAAT+TGG + chr1_2:15743163-15743182 Msa0059070:three_prime_UTR 30.0%
! ATTAATTGGATTTTGTGCTG+AGG + chr1_2:15743177-15743196 Msa0059070:three_prime_UTR 30.0%
! TTAATTGGATTTTGTGCTGA+GGG + chr1_2:15743178-15743197 Msa0059070:three_prime_UTR 30.0%
TTATGATCAATTTGGACAAG+AGG + chr1_2:15743663-15743682 Msa0059070:three_prime_UTR 30.0%
TATGATCAATTTGGACAAGA+GGG + chr1_2:15743664-15743683 Msa0059070:three_prime_UTR 30.0%
CAACAATTACACAATCAGAC+TGG + chr1_2:15739431-15739450 Msa0059070:CDS 35.0%
CAATTAGATTGTTGAACTCC+AGG - chr1_2:15739462-15739481 None:intergenic 35.0%
ATACTTCTTCCTGTGTCAAT+TGG + chr1_2:15739646-15739665 Msa0059070:CDS 35.0%
AGTTGGTTGTCATGTGAAAT+TGG + chr1_2:15739728-15739747 Msa0059070:CDS 35.0%
AATTGGTTACTCCAACTTCT+TGG + chr1_2:15739745-15739764 Msa0059070:CDS 35.0%
TGCTTTGTGCATGATATCAT+AGG - chr1_2:15739799-15739818 None:intergenic 35.0%
! ATGCACAAAGCATTAGTCTA+TGG + chr1_2:15739807-15739826 Msa0059070:CDS 35.0%
CTTCCTTGTAAGAATCTTTG+TGG + chr1_2:15739852-15739871 Msa0059070:CDS 35.0%
TCCTTGTAAGAATCTTTGTG+GGG + chr1_2:15739854-15739873 Msa0059070:CDS 35.0%
TTTCTCAGTGGTAAAGTTGA+AGG - chr1_2:15739895-15739914 None:intergenic 35.0%
!! AAAGCATTGAAGTTTCTCAG+TGG - chr1_2:15739907-15739926 None:intergenic 35.0%
TTCGTTTCTGCCATAATTTC+TGG + chr1_2:15739925-15739944 Msa0059070:CDS 35.0%
TCGTTTCTGCCATAATTTCT+GGG + chr1_2:15739926-15739945 Msa0059070:CDS 35.0%
! TGGTAATATGAGGTTTTCCA+CGG - chr1_2:15740257-15740276 None:intergenic 35.0%
!! TAATGTGGCTTGGTAATATG+AGG - chr1_2:15740267-15740286 None:intergenic 35.0%
AAATAAGCGATAATGTGGCT+TGG - chr1_2:15740277-15740296 None:intergenic 35.0%
TATCTTAACATGTGCCTTGA+GGG - chr1_2:15740807-15740826 None:intergenic 35.0%
AGCTATCAAAATACACTGTC+CGG + chr1_2:15741165-15741184 Msa0059070:intron 35.0%
TGTTAAAATCCTACACCATC+CGG - chr1_2:15741318-15741337 None:intergenic 35.0%
GAATGCTAAACAATGTCATC+AGG + chr1_2:15741565-15741584 Msa0059070:intron 35.0%
GTCAACTGTGTCAAGTATTA+TGG - chr1_2:15741711-15741730 None:intergenic 35.0%
! ATGCATTGACATGCGTAATA+AGG - chr1_2:15741733-15741752 None:intergenic 35.0%
TTCAAATGGGTCATCTATTG+CGG + chr1_2:15741985-15742004 Msa0059070:intron 35.0%
GGGCCAAACAAAAAATATGA+AGG + chr1_2:15742761-15742780 Msa0059070:three_prime_UTR 35.0%
GGTGATGCAGAGTATATAAT+AGG + chr1_2:15742782-15742801 Msa0059070:three_prime_UTR 35.0%
TTTGCAGCTAGATTTCTGTT+TGG + chr1_2:15742839-15742858 Msa0059070:three_prime_UTR 35.0%
TTGCAGCTAGATTTCTGTTT+GGG + chr1_2:15742840-15742859 Msa0059070:three_prime_UTR 35.0%
CCTCCATTTGAATATCAACA+AGG - chr1_2:15742882-15742901 None:intergenic 35.0%
CCTTGTTGATATTCAAATGG+AGG + chr1_2:15742879-15742898 Msa0059070:three_prime_UTR 35.0%
AGAGGTTTCAAAGACAAGTT+AGG + chr1_2:15743004-15743023 Msa0059070:three_prime_UTR 35.0%
TTCAAAGACAAGTTAGGTGA+AGG + chr1_2:15743010-15743029 Msa0059070:three_prime_UTR 35.0%
GTTTATGAATTCATGCCCAA+TGG + chr1_2:15743217-15743236 Msa0059070:three_prime_UTR 35.0%
AAATCTTCATTTCGCATCCA+TGG - chr1_2:15743348-15743367 None:intergenic 35.0%
! AATCCAAAGTCAGAGACTTT+TGG - chr1_2:15743421-15743440 None:intergenic 35.0%
AAAAGTCTCTGACTTTGGAT+TGG + chr1_2:15743420-15743439 Msa0059070:three_prime_UTR 35.0%
!! AAGAGGTACCATTGGATATA+TGG + chr1_2:15743489-15743508 Msa0059070:three_prime_UTR 35.0%
CATCCCAAAGCTATAAACAT+CGG - chr1_2:15743560-15743579 None:intergenic 35.0%
AGAAATAGAAGATGTCACAG+AGG + chr1_2:15743693-15743712 Msa0059070:three_prime_UTR 35.0%
CAACTGTGAACCTATCTATA+TGG + chr1_2:15744148-15744167 Msa0059070:three_prime_UTR 35.0%
!! GTGGTGGATGAGAATGATAT+TGG + chr1_2:15739176-15739195 Msa0059070:CDS 40.0%
CTACCTTGTAGATGCAGAAA+TGG - chr1_2:15739213-15739232 None:intergenic 40.0%
! GATATTTTGCCACAAGAGGA+AGG - chr1_2:15739276-15739295 None:intergenic 40.0%
GATCGAGACAAGAAATAACG+AGG - chr1_2:15739495-15739514 None:intergenic 40.0%
!! TGCTCAAAAAGAAGGGCATT+GGG - chr1_2:15739573-15739592 None:intergenic 40.0%
! ATGCTCAAAAAGAAGGGCAT+TGG - chr1_2:15739574-15739593 None:intergenic 40.0%
TCCCCACAAAGATTCTTACA+AGG - chr1_2:15739858-15739877 None:intergenic 40.0%
AAGTTGAAGGAACAGTAGTC+TGG - chr1_2:15739882-15739901 None:intergenic 40.0%
CGTTTCTGCCATAATTTCTG+GGG + chr1_2:15739927-15739946 Msa0059070:CDS 40.0%
ATTGAGAATTGCGCCAAACA+CGG + chr1_2:15740168-15740187 Msa0059070:intron 40.0%
TTCAGCATCAATTCCGTGTT+TGG - chr1_2:15740184-15740203 None:intergenic 40.0%
GATTGCAAGAAAGTGGTTGA+CGG - chr1_2:15740220-15740239 None:intergenic 40.0%
CGAACTTGATTGCAAGAAAG+TGG - chr1_2:15740227-15740246 None:intergenic 40.0%
ATCAAGTTCGATAGATACCG+TGG + chr1_2:15740237-15740256 Msa0059070:intron 40.0%
TTCCATTGTTAGGTGTTCGA+GGG + chr1_2:15740612-15740631 Msa0059070:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG + chr1_2:15740790-15740809 Msa0059070:intron 40.0%
GTATCTTAACATGTGCCTTG+AGG - chr1_2:15740808-15740827 None:intergenic 40.0%
! TGTCTTTAGGGAACTGGTTA+GGG + chr1_2:15741028-15741047 Msa0059070:intron 40.0%
AAACAATGTCATCAGGGCAT+TGG + chr1_2:15741486-15741505 Msa0059070:intron 40.0%
AAACAATGTCATCAGGGCAT+TGG + chr1_2:15741486-15741505 Msa0059070:intron 40.0%
CTGTGTCAAGTATTATGGGA+CGG - chr1_2:15741706-15741725 None:intergenic 40.0%
TCAAATGGGTCATCTATTGC+GGG + chr1_2:15741986-15742005 Msa0059070:intron 40.0%
TTTGTCGTCTATGTGATCCA+TGG + chr1_2:15742053-15742072 Msa0059070:intron 40.0%
TTAGTCAGTCATCAAGTCCA+TGG - chr1_2:15742073-15742092 None:intergenic 40.0%
TCAAGTGAATAAAAGGGCGA+TGG - chr1_2:15742186-15742205 None:intergenic 40.0%
CAGATATTACGATCGCTATG+TGG + chr1_2:15742221-15742240 Msa0059070:intron 40.0%
ATTACGATCGCTATGTGGAT+AGG + chr1_2:15742226-15742245 Msa0059070:intron 40.0%
AAGTTTACTTGCCAACAAGC+AGG - chr1_2:15742658-15742677 None:intergenic 40.0%
AATCTAGCTGCAAAGAAGGA+TGG - chr1_2:15742833-15742852 None:intergenic 40.0%
CAGAAATCTAGCTGCAAAGA+AGG - chr1_2:15742837-15742856 None:intergenic 40.0%
GAGAACAATCTCATGCCTAT+TGG + chr1_2:15742950-15742969 Msa0059070:three_prime_UTR 40.0%
GAAATCAAGAAGATGGCTAG+AGG + chr1_2:15742986-15743005 Msa0059070:three_prime_UTR 40.0%
AAAGACAAGTTAGGTGAAGG+AGG + chr1_2:15743013-15743032 Msa0059070:three_prime_UTR 40.0%
TTTAAGGGAAACCTACGTAG+CGG + chr1_2:15743049-15743068 Msa0059070:three_prime_UTR 40.0%
AACATCTTGATTGCCACACA+AGG - chr1_2:15743076-15743095 None:intergenic 40.0%
TTGTGTGGCAATCAAGATGT+TGG + chr1_2:15743075-15743094 Msa0059070:three_prime_UTR 40.0%
TGTGTGGCAATCAAGATGTT+GGG + chr1_2:15743076-15743095 Msa0059070:three_prime_UTR 40.0%
AAGATGTTGGGTAAGGCAAA+AGG + chr1_2:15743088-15743107 Msa0059070:three_prime_UTR 40.0%
TTGGGTAAGGCAAAAGGTAA+TGG + chr1_2:15743094-15743113 Msa0059070:three_prime_UTR 40.0%
TGGGTAAGGCAAAAGGTAAT+GGG + chr1_2:15743095-15743114 Msa0059070:three_prime_UTR 40.0%
ATTAGTGAAGTCGCAACCAT+CGG + chr1_2:15743127-15743146 Msa0059070:three_prime_UTR 40.0%
CAAATGATGTATCCTTCCGA+TGG - chr1_2:15743146-15743165 None:intergenic 40.0%
ACTCCAAAAGTCTCTGACTT+TGG + chr1_2:15743415-15743434 Msa0059070:three_prime_UTR 40.0%
GTGACAATGCTATTCTCTAC+AGG - chr1_2:15743457-15743476 None:intergenic 40.0%
TAGCATTGTCACAATGACTG+CGG + chr1_2:15743465-15743484 Msa0059070:three_prime_UTR 40.0%
! GCTATAAACATCGGCCTTAT+AGG - chr1_2:15743551-15743570 None:intergenic 40.0%
AAGGCCGATGTTTATAGCTT+TGG + chr1_2:15743553-15743572 Msa0059070:three_prime_UTR 40.0%
AGGCCGATGTTTATAGCTTT+GGG + chr1_2:15743554-15743573 Msa0059070:three_prime_UTR 40.0%
!!! TAGCTTTGGGATGCTTTTGA+TGG + chr1_2:15743567-15743586 Msa0059070:three_prime_UTR 40.0%
TGATGGAGATGGCAAGTAAA+AGG + chr1_2:15743584-15743603 Msa0059070:three_prime_UTR 40.0%
GAAAAACCTAAATGCCCAAG+CGG + chr1_2:15743606-15743625 Msa0059070:three_prime_UTR 40.0%
AATAGAAGATGTCACAGAGG+AGG + chr1_2:15743696-15743715 Msa0059070:three_prime_UTR 40.0%
AGATGATCATAGTCGCACTT+TGG + chr1_2:15743737-15743756 Msa0059070:three_prime_UTR 40.0%
TCCACTACTTTGCTCATTGA+GGG - chr1_2:15743790-15743809 None:intergenic 40.0%
AACGCTTTATCCGCATGAAA+CGG + chr1_2:15743855-15743874 Msa0059070:three_prime_UTR 40.0%
AATCATCGCTCGACATTGTT+CGG - chr1_2:15743909-15743928 None:intergenic 40.0%
ATTCGATGTAGAACACAGTG+GGG - chr1_2:15744064-15744083 None:intergenic 40.0%
CATTCGATGTAGAACACAGT+GGG - chr1_2:15744065-15744084 None:intergenic 40.0%
ACATTCGATGTAGAACACAG+TGG - chr1_2:15744066-15744085 None:intergenic 40.0%
ACAACAGTTTCGCCACTATG+TGG + chr1_2:15739157-15739176 Msa0059070:exon 45.0%
CATTCTCATCCACCACATAG+TGG - chr1_2:15739172-15739191 None:intergenic 45.0%
! CTGCCATTTCTGCATCTACA+AGG + chr1_2:15739207-15739226 Msa0059070:CDS 45.0%
ACTTGTCTACCTTCCTCTTG+TGG + chr1_2:15739264-15739283 Msa0059070:CDS 45.0%
CTGCTGTTACCGCAATGAAT+TGG - chr1_2:15739333-15739352 None:intergenic 45.0%
CAATTCATTGCGGTAACAGC+AGG + chr1_2:15739331-15739350 Msa0059070:CDS 45.0%
! ACAATCAGACTGGTTGATCC+TGG + chr1_2:15739441-15739460 Msa0059070:CDS 45.0%
! TTTGGAGTGCCAATTGACAC+AGG - chr1_2:15739658-15739677 None:intergenic 45.0%
TGTGTCAATTGGCACTCCAA+AGG + chr1_2:15739657-15739676 Msa0059070:CDS 45.0%
GTGTCAATTGGCACTCCAAA+GGG + chr1_2:15739658-15739677 Msa0059070:CDS 45.0%
GTTACTCCAACTTCTTGGTC+CGG + chr1_2:15739750-15739769 Msa0059070:CDS 45.0%
! TTCTGCCATAATTTCTGGGG+AGG + chr1_2:15739930-15739949 Msa0059070:CDS 45.0%
GATCTCCTCCCCAGAAATTA+TGG - chr1_2:15739938-15739957 None:intergenic 45.0%
! TAATTTCTGGGGAGGAGATC+CGG + chr1_2:15739938-15739957 Msa0059070:CDS 45.0%
CTTCCATTGTTAGGTGTTCG+AGG + chr1_2:15740611-15740630 Msa0059070:intron 45.0%
ATCCCTCGAACACCTAACAA+TGG - chr1_2:15740617-15740636 None:intergenic 45.0%
TGTTAGGTGTTCGAGGGATA+TGG + chr1_2:15740618-15740637 Msa0059070:intron 45.0%
GTTGCTTAACATGTGCCCTT+GGG + chr1_2:15740919-15740938 Msa0059070:intron 45.0%
TTGCTTAACATGTGCCCTTG+GGG + chr1_2:15740920-15740939 Msa0059070:intron 45.0%
!! CATGTTAACTTGTGCCCCAA+GGG - chr1_2:15740937-15740956 None:intergenic 45.0%
!! TCATGTTAACTTGTGCCCCA+AGG - chr1_2:15740938-15740957 None:intergenic 45.0%
! AACCAGTGTCTTTAGGGAAC+TGG + chr1_2:15741022-15741041 Msa0059070:intron 45.0%
AACCAGTTCCCTAAAGACAC+TGG - chr1_2:15741027-15741046 None:intergenic 45.0%
! GTGTCTTTAGGGAACTGGTT+AGG + chr1_2:15741027-15741046 Msa0059070:intron 45.0%
TGCTTATAACAGTGACCGGA+TGG + chr1_2:15741300-15741319 Msa0059070:intron 45.0%
TGTCAAGTATTATGGGACGG+AGG - chr1_2:15741703-15741722 None:intergenic 45.0%
TTGAAAGGTCACCTGCTTGT+TGG + chr1_2:15742644-15742663 Msa0059070:intron 45.0%
TAGCTGCAAAGAAGGATGGT+AGG - chr1_2:15742829-15742848 None:intergenic 45.0%
AAGTTAGGTGAAGGAGGCTT+TGG + chr1_2:15743019-15743038 Msa0059070:three_prime_UTR 45.0%
! AGGCTTTGGCACTGTGTTTA+AGG + chr1_2:15743033-15743052 Msa0059070:three_prime_UTR 45.0%
! GGCTTTGGCACTGTGTTTAA+GGG + chr1_2:15743034-15743053 Msa0059070:three_prime_UTR 45.0%
GGCAATCAAGATGTTGGGTA+AGG + chr1_2:15743081-15743100 Msa0059070:three_prime_UTR 45.0%
TCTTCATTTCGCATCCATGG+TGG - chr1_2:15743345-15743364 None:intergenic 45.0%
TCGTCAAGAAGGATGTTGTG+AGG - chr1_2:15743388-15743407 None:intergenic 45.0%
GAGTGAAGTTCTCGTCAAGA+AGG - chr1_2:15743399-15743418 None:intergenic 45.0%
CTCAGGAGCCATATATCCAA+TGG - chr1_2:15743500-15743519 None:intergenic 45.0%
!! TATAGGGGGAGTGTCCTATA+AGG + chr1_2:15743534-15743553 Msa0059070:three_prime_UTR 45.0%
! TGGGATGCTTTTGATGGAGA+TGG + chr1_2:15743573-15743592 Msa0059070:three_prime_UTR 45.0%
CCACTACTTTGCTCATTGAG+GGG - chr1_2:15743789-15743808 None:intergenic 45.0%
CTCCACTACTTTGCTCATTG+AGG - chr1_2:15743791-15743810 None:intergenic 45.0%
! AAAGTAGTGGAGATGCTGGA+AGG + chr1_2:15743799-15743818 Msa0059070:three_prime_UTR 45.0%
!! TTGGCTTTGGAGGCATTTCA+AGG - chr1_2:15743837-15743856 None:intergenic 45.0%
GTTTCATGCGGATAAAGCGT+TGG - chr1_2:15743856-15743875 None:intergenic 45.0%
TCGTCTACAACCGTTTCATG+CGG - chr1_2:15743868-15743887 None:intergenic 45.0%
CGACATTGTTCGGTCATAGT+TGG - chr1_2:15743899-15743918 None:intergenic 45.0%
TTCGATGTAGAACACAGTGG+GGG - chr1_2:15744063-15744082 None:intergenic 45.0%
!!! AAAAGAATAATTTTTTTAAA+AGG + chr1_2:15740490-15740509 Msa0059070:intron 5.0%
!! CAAAAAAAAATAAAAAATAA+GGG - chr1_2:15742619-15742638 None:intergenic 5.0%
!! TCAAAAAAAAATAAAAAATA+AGG - chr1_2:15742620-15742639 None:intergenic 5.0%
ACAGTTTCGCCACTATGTGG+TGG + chr1_2:15739160-15739179 Msa0059070:exon 50.0%
GATCCATACCAAGCCACAGT+AGG + chr1_2:15739540-15739559 Msa0059070:CDS 50.0%
ATTGGGATCTCCTCCTACTG+TGG - chr1_2:15739556-15739575 None:intergenic 50.0%
TGCAAACCGGACCAAGAAGT+TGG - chr1_2:15739759-15739778 None:intergenic 50.0%
! AATTTCTGGGGAGGAGATCC+GGG + chr1_2:15739939-15739958 Msa0059070:CDS 50.0%
TTACCGCAAAAACGATCGCC+CGG - chr1_2:15739960-15739979 None:intergenic 50.0%
GGTTGCTTAACATGTGCCCT+TGG + chr1_2:15740918-15740937 Msa0059070:intron 50.0%
TAACAGTGACCGGATGGTGT+AGG + chr1_2:15741306-15741325 Msa0059070:intron 50.0%
ATGGGTCATCTATTGCGGGA+CGG + chr1_2:15741990-15742009 Msa0059070:intron 50.0%
! ATATCGGTTGGAGTAGCTCG+TGG + chr1_2:15743307-15743326 Msa0059070:three_prime_UTR 50.0%
! TATCGGTTGGAGTAGCTCGT+GGG + chr1_2:15743308-15743327 Msa0059070:three_prime_UTR 50.0%
GGGATTGCTTATCTCCACCA+TGG + chr1_2:15743328-15743347 Msa0059070:three_prime_UTR 50.0%
AATGCTCCGCTTGGGCATTT+AGG - chr1_2:15743615-15743634 None:intergenic 50.0%
! TTGGCTTGAATGCTCCGCTT+GGG - chr1_2:15743623-15743642 None:intergenic 50.0%
CCCCTCAATGAGCAAAGTAG+TGG + chr1_2:15743786-15743805 Msa0059070:three_prime_UTR 50.0%
! GAGCAAAGTAGTGGAGATGC+TGG + chr1_2:15743795-15743814 Msa0059070:three_prime_UTR 50.0%
!! GGATAAAGCGTTGGCTTTGG+AGG - chr1_2:15743847-15743866 None:intergenic 50.0%
!! TGCGGATAAAGCGTTGGCTT+TGG - chr1_2:15743850-15743869 None:intergenic 50.0%
GTAGAACACAGTGGGGGAAA+AGG - chr1_2:15744057-15744076 None:intergenic 50.0%
!! CCTCCTACTGTGGCTTGGTA+TGG - chr1_2:15739546-15739565 None:intergenic 55.0%
CCATACCAAGCCACAGTAGG+AGG + chr1_2:15739543-15739562 Msa0059070:CDS 55.0%
GATCTCCTCCTACTGTGGCT+TGG - chr1_2:15739551-15739570 None:intergenic 55.0%
!! GATCCGGGCGATCGTTTTTG+CGG + chr1_2:15739954-15739973 Msa0059070:CDS 55.0%
GTCATCTATTGCGGGACGGA+GGG + chr1_2:15741994-15742013 Msa0059070:intron 55.0%
GTGAAGTCGCAACCATCGGA+AGG + chr1_2:15743131-15743150 Msa0059070:three_prime_UTR 55.0%
GTCACAATGACTGCGGCAAG+AGG + chr1_2:15743472-15743491 Msa0059070:three_prime_UTR 55.0%
!! ACTGCGGCAAGAGGTACCAT+TGG + chr1_2:15743481-15743500 Msa0059070:three_prime_UTR 55.0%
!! GTTGGCTTGAATGCTCCGCT+TGG - chr1_2:15743624-15743643 None:intergenic 55.0%
CTCATTGAGGGGCGATCATC+TGG - chr1_2:15743778-15743797 None:intergenic 55.0%
GGTCATCTATTGCGGGACGG+AGG + chr1_2:15741993-15742012 Msa0059070:intron 60.0%
CCACACAAGGACCGCTACGT+AGG - chr1_2:15743063-15743082 None:intergenic 60.0%
CCTACGTAGCGGTCCTTGTG+TGG + chr1_2:15743060-15743079 Msa0059070:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 15739152 15744176 15739152 ID=Msa0059070;Name=Msa0059070
chr1_2 mRNA 15739152 15744176 15739152 ID=Msa0059070-mRNA-1;Parent=Msa0059070;Name=Msa0059070-mRNA-1;_AED=0.03;_eAED=0.03;_QI=22|0.5|0.66|1|0|0.66|3|1421|296
chr1_2 exon 15739152 15739975 15739152 ID=Msa0059070-mRNA-1:exon:6333;Parent=Msa0059070-mRNA-1
chr1_2 exon 15740624 15740697 15740624 ID=Msa0059070-mRNA-1:exon:6334;Parent=Msa0059070-mRNA-1
chr1_2 exon 15742741 15744176 15742741 ID=Msa0059070-mRNA-1:exon:6335;Parent=Msa0059070-mRNA-1
chr1_2 five_prime_UTR 15739152 15739173 15739152 ID=Msa0059070-mRNA-1:five_prime_utr;Parent=Msa0059070-mRNA-1
chr1_2 CDS 15739174 15739975 15739174 ID=Msa0059070-mRNA-1:cds;Parent=Msa0059070-mRNA-1
chr1_2 CDS 15740624 15740697 15740624 ID=Msa0059070-mRNA-1:cds;Parent=Msa0059070-mRNA-1
chr1_2 CDS 15742741 15742755 15742741 ID=Msa0059070-mRNA-1:cds;Parent=Msa0059070-mRNA-1
chr1_2 three_prime_UTR 15742756 15744176 15742756 ID=Msa0059070-mRNA-1:three_prime_utr;Parent=Msa0059070-mRNA-1
Gene Sequence

>Msa0059070

ATGTGGTGGATGAGAATGATATTGGTACTGTTGCTGCCATTTCTGCATCTACAAGGTAGTAGCAGTACTCTTATTATTGAGCAAGAGCATACTTGTCTACCTTCCTCTTGTGGCAAAATATCAAAAATAAGTTACCCATTTCGATTAAAAGATGATCCAATTCATTGCGGTAACAGCAGGTATGAGCTATCTTGTGAAAATAATGTGACAAGTTTATATTTATACTCTGCAAAATATCATGTGCAATCCATCAACTACAACAATTACACAATCAGACTGGTTGATCCTGGAGTTCAACAATCTAATTGCTCTTCACTTCCTCGTTATTTCTTGTCTCGATCAAATTTCTTTGATACTTATGTATACGATCCATACCAAGCCACAGTAGGAGGAGATCCCAATGCCCTTCTTTTTGAGCATATAGTTTACTTGAATTGTACCCATCAAGTAAGAGACAATCATAAATATGTTGATACTTCTTCCTGTGTCAATTGGCACTCCAAAGGGTATTATATATATGTTATGGCTGGTGATTTAATTGCTCAAGATTTTCAAGTTGGTTGTCATGTGAAATTGGTTACTCCAACTTCTTGGTCCGGTTTGCAAAGAAATCAAGTACTTTCCTATGATATCATGCACAAAGCATTAGTCTATGGATTTGATATTTCATGGTTTCATCTTCCTTGTAAGAATCTTTGTGGGGATCCAGACTACTGTTCCTTCAACTTTACCACTGAGAAACTTCAATGCTTTCGTTTCTGCCATAATTTCTGGGGAGGAGATCCGGGCGATCGTTTTTGCGGTGTTCGAGGGATATGGTATCAGCTCCGTTTATACGCTAAATGTAAGAATTCTACATCACCTAAATTTAGAAATGATTACTTGAAATGA
Protein sequence

>Msa0059070

MWWMRMILVLLLPFLHLQGSSSTLIIEQEHTCLPSSCGKISKISYPFRLKDDPIHCGNSRYELSCENNVTSLYLYSAKYHVQSINYNNYTIRLVDPGVQQSNCSSLPRYFLSRSNFFDTYVYDPYQATVGGDPNALLFEHIVYLNCTHQVRDNHKYVDTSSCVNWHSKGYYIYVMAGDLIAQDFQVGCHVKLVTPTSWSGLQRNQVLSYDIMHKALVYGFDISWFHLPCKNLCGDPDYCSFNFTTEKLQCFRFCHNFWGGDPGDRFCGVRGIWYQLRLYAKCKNSTSPKFRNDYLK*