Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387830 | XP_003601522.1 | 99.027 | 411 | 4 | 0 | 1 | 411 | 1 | 411 | 0.0 | 845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387830 | sp|Q9SSE5|COL9_ARATH | 52.719 | 423 | 137 | 10 | 1 | 411 | 1 | 372 | 1.34e-141 | 411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387830 | G7J8U1 | 99.027 | 411 | 4 | 0 | 1 | 411 | 1 | 411 | 0.0 | 845 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0387830 | TF | C2C2-CO-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001810 | Msa0387830 | 0.921140 | 5.238175e-88 | -8.615850e-47 |
| Msa0074100 | Msa0387830 | 0.802680 | 5.000544e-49 | -8.615850e-47 |
| Msa0140630 | Msa0387830 | 0.807415 | 5.111194e-50 | -8.615850e-47 |
| Msa0145080 | Msa0387830 | 0.801259 | 9.799137e-49 | -8.615850e-47 |
| Msa0369210 | Msa0387830 | 0.826689 | 2.363761e-54 | -8.615850e-47 |
| Msa0381500 | Msa0387830 | 0.823944 | 1.054170e-53 | -8.615850e-47 |
| Msa0387830 | Msa0402210 | 0.844380 | 7.836169e-59 | -8.615850e-47 |
| Msa0387830 | Msa0420790 | 0.927056 | 1.998563e-91 | -8.615850e-47 |
| Msa0387830 | Msa0438470 | 0.957650 | 1.622520e-115 | -8.615850e-47 |
| Msa0387830 | Msa0483770 | 0.853173 | 2.846129e-61 | -8.615850e-47 |
| Msa0387830 | Msa0512350 | 0.942988 | 2.701013e-102 | -8.615850e-47 |
| Msa0387830 | Msa0519950 | 0.811530 | 6.684385e-51 | -8.615850e-47 |
| Msa0387830 | Msa0550130 | 0.849535 | 3.037678e-60 | -8.615850e-47 |
| Msa0387830 | Msa0550150 | 0.852424 | 4.659134e-61 | -8.615850e-47 |
| Msa0387830 | Msa0574910 | 0.924337 | 8.064076e-90 | -8.615850e-47 |
| Msa0387830 | Msa0605630 | 0.837725 | 4.386527e-57 | -8.615850e-47 |
| Msa0387830 | Msa0605640 | 0.844922 | 5.599570e-59 | -8.615850e-47 |
| Msa0387830 | Msa0646580 | 0.845720 | 3.404677e-59 | -8.615850e-47 |
| Msa0387830 | Msa0686210 | 0.804040 | 2.613670e-49 | -8.615850e-47 |
| Msa0387830 | Msa0686220 | 0.846280 | 2.398003e-59 | -8.615850e-47 |
| Msa0387830 | Msa0686230 | 0.820057 | 8.388368e-53 | -8.615850e-47 |
| Msa0387830 | Msa0708930 | 0.802010 | 6.872429e-49 | -8.615850e-47 |
| Msa0387830 | Msa0758300 | -0.801611 | 8.298064e-49 | -8.615850e-47 |
| Msa0387830 | Msa0867720 | 0.875645 | 2.616628e-68 | -8.615850e-47 |
| Msa0387830 | Msa0867730 | 0.846896 | 1.628097e-59 | -8.615850e-47 |
| Msa0387830 | Msa0930760 | 0.923160 | 3.826189e-89 | -8.615850e-47 |
| Msa0387830 | Msa0959480 | 0.800905 | 1.157595e-48 | -8.615850e-47 |
| Msa0387830 | Msa0968610 | 0.823053 | 1.703706e-53 | -8.615850e-47 |
| Msa0387830 | Msa1039820 | 0.811904 | 5.542723e-51 | -8.615850e-47 |
| Msa0387830 | Msa1128260 | 0.813037 | 3.134441e-51 | -8.615850e-47 |
| Msa0387830 | Msa1130820 | -0.908767 | 1.193055e-81 | -8.615850e-47 |
| Msa0387830 | Msa1212190 | 0.900625 | 6.072279e-78 | -8.615850e-47 |
| Msa0387830 | Msa1212270 | 0.905532 | 3.888116e-80 | -8.615850e-47 |
| Msa0387830 | Msa1259910 | 0.901977 | 1.550447e-78 | -8.615850e-47 |
| Msa0387830 | Msa1353750 | 0.806446 | 8.194066e-50 | -8.615850e-47 |
| Msa0387830 | Msa1406670 | -0.909976 | 3.135376e-82 | -8.615850e-47 |
| Msa0387830 | Msa1448870 | -0.908212 | 2.186900e-81 | -8.615850e-47 |
| Msa0355140 | Msa0387830 | 0.848355 | 6.461510e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387830 | MtrunA17_Chr3g0120711 | 99.027 | 411 | 4 | 0 | 1 | 411 | 1 | 411 | 0.0 | 845 |
| Msa0387830 | MtrunA17_Chr5g0429341 | 68.675 | 415 | 119 | 7 | 1 | 410 | 1 | 409 | 0.0 | 513 |
| Msa0387830 | MtrunA17_Chr2g0322941 | 51.818 | 110 | 52 | 1 | 1 | 110 | 40 | 148 | 1.03e-32 | 123 |
| Msa0387830 | MtrunA17_Chr7g0268691 | 50.000 | 100 | 50 | 0 | 5 | 104 | 20 | 119 | 2.20e-29 | 117 |
| Msa0387830 | MtrunA17_Chr7g0268691 | 62.500 | 48 | 18 | 0 | 348 | 395 | 322 | 369 | 6.90e-12 | 66.6 |
| Msa0387830 | MtrunA17_Chr1g0209071 | 44.860 | 107 | 57 | 1 | 1 | 107 | 1 | 105 | 1.06e-24 | 103 |
| Msa0387830 | MtrunA17_Chr2g0322951 | 49.550 | 111 | 40 | 3 | 303 | 405 | 41 | 143 | 1.54e-24 | 98.6 |
| Msa0387830 | MtrunA17_Chr7g0251781 | 35.971 | 139 | 81 | 2 | 1 | 132 | 1 | 138 | 1.06e-21 | 95.9 |
| Msa0387830 | MtrunA17_Chr7g0251781 | 56.061 | 66 | 29 | 0 | 331 | 396 | 318 | 383 | 1.27e-14 | 75.1 |
| Msa0387830 | MtrunA17_Chr1g0150471 | 44.048 | 84 | 46 | 1 | 4 | 86 | 5 | 88 | 5.03e-17 | 81.3 |
| Msa0387830 | MtrunA17_Chr3g0136701 | 39.216 | 102 | 61 | 1 | 4 | 104 | 5 | 106 | 3.77e-16 | 78.6 |
| Msa0387830 | MtrunA17_Chr3g0136701 | 45.833 | 72 | 36 | 1 | 333 | 401 | 208 | 279 | 3.16e-11 | 63.9 |
| Msa0387830 | MtrunA17_Chr4g0072871 | 38.889 | 90 | 54 | 1 | 4 | 92 | 21 | 110 | 3.67e-15 | 76.6 |
| Msa0387830 | MtrunA17_Chr7g0220721 | 41.758 | 91 | 52 | 1 | 5 | 94 | 26 | 116 | 1.57e-14 | 74.7 |
| Msa0387830 | MtrunA17_Chr4g0033641 | 38.542 | 96 | 49 | 2 | 1 | 86 | 1 | 96 | 1.05e-13 | 70.5 |
| Msa0387830 | MtrunA17_Chr5g0405151 | 38.095 | 84 | 44 | 1 | 1 | 76 | 1 | 84 | 2.15e-11 | 62.8 |
| Msa0387830 | MtrunA17_Chr1g0155811 | 34.021 | 97 | 53 | 2 | 1 | 86 | 1 | 97 | 3.02e-11 | 63.5 |
| Msa0387830 | MtrunA17_Chr4g0035651 | 35.052 | 97 | 52 | 2 | 1 | 86 | 1 | 97 | 4.14e-11 | 62.4 |
| Msa0387830 | MtrunA17_Chr3g0142221 | 33.673 | 98 | 53 | 2 | 1 | 86 | 1 | 98 | 6.70e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387830 | AT3G07650.3 | 52.719 | 423 | 137 | 10 | 1 | 411 | 1 | 372 | 1.36e-142 | 411 |
| Msa0387830 | AT3G07650.2 | 52.719 | 423 | 137 | 10 | 1 | 411 | 1 | 372 | 1.36e-142 | 411 |
| Msa0387830 | AT3G07650.4 | 52.719 | 423 | 137 | 10 | 1 | 411 | 1 | 372 | 1.36e-142 | 411 |
| Msa0387830 | AT3G07650.1 | 52.719 | 423 | 137 | 10 | 1 | 411 | 1 | 372 | 1.36e-142 | 411 |
| Msa0387830 | AT5G48250.1 | 53.810 | 420 | 138 | 11 | 1 | 411 | 1 | 373 | 8.60e-141 | 406 |
| Msa0387830 | AT3G21880.3 | 34.063 | 411 | 210 | 11 | 5 | 408 | 9 | 365 | 2.36e-61 | 203 |
| Msa0387830 | AT3G21880.2 | 34.063 | 411 | 210 | 11 | 5 | 408 | 9 | 365 | 2.36e-61 | 203 |
| Msa0387830 | AT3G21880.1 | 34.063 | 411 | 210 | 11 | 5 | 408 | 5 | 361 | 2.76e-61 | 202 |
| Msa0387830 | AT4G15250.1 | 53.153 | 111 | 50 | 2 | 5 | 115 | 5 | 113 | 6.60e-34 | 129 |
| Msa0387830 | AT4G15250.1 | 51.020 | 98 | 45 | 1 | 307 | 404 | 232 | 326 | 7.69e-20 | 90.1 |
| Msa0387830 | AT2G33500.2 | 47.170 | 106 | 55 | 1 | 5 | 109 | 12 | 117 | 2.99e-30 | 120 |
| Msa0387830 | AT2G33500.2 | 60.784 | 51 | 20 | 0 | 346 | 396 | 348 | 398 | 1.51e-12 | 69.3 |
| Msa0387830 | AT2G33500.1 | 47.170 | 106 | 55 | 1 | 5 | 109 | 12 | 117 | 3.03e-30 | 120 |
| Msa0387830 | AT2G33500.1 | 60.784 | 51 | 20 | 0 | 346 | 396 | 349 | 399 | 1.51e-12 | 69.3 |
| Msa0387830 | AT1G68190.1 | 31.395 | 258 | 141 | 6 | 1 | 227 | 10 | 262 | 3.36e-29 | 117 |
| Msa0387830 | AT1G68190.3 | 31.395 | 258 | 141 | 6 | 1 | 227 | 10 | 262 | 3.36e-29 | 117 |
| Msa0387830 | AT1G68190.2 | 31.395 | 258 | 141 | 6 | 1 | 227 | 39 | 291 | 3.78e-29 | 117 |
| Msa0387830 | AT1G28050.1 | 39.041 | 146 | 86 | 2 | 5 | 147 | 9 | 154 | 6.45e-29 | 117 |
| Msa0387830 | AT1G28050.1 | 61.111 | 54 | 21 | 0 | 346 | 399 | 377 | 430 | 4.54e-13 | 70.9 |
| Msa0387830 | AT2G47890.2 | 36.478 | 159 | 93 | 3 | 4 | 162 | 12 | 162 | 2.45e-25 | 103 |
| Msa0387830 | AT2G47890.3 | 36.478 | 159 | 93 | 3 | 4 | 162 | 12 | 162 | 7.45e-25 | 103 |
| Msa0387830 | AT2G47890.1 | 36.478 | 159 | 93 | 3 | 4 | 162 | 12 | 162 | 9.57e-25 | 104 |
| Msa0387830 | AT5G24930.1 | 43.333 | 90 | 50 | 1 | 4 | 92 | 5 | 94 | 4.14e-17 | 82.8 |
| Msa0387830 | AT5G24930.1 | 55.769 | 52 | 23 | 0 | 344 | 395 | 285 | 336 | 3.13e-11 | 65.1 |
| Msa0387830 | AT2G24790.2 | 42.222 | 90 | 51 | 1 | 4 | 92 | 7 | 96 | 8.87e-16 | 76.6 |
| Msa0387830 | AT2G24790.1 | 40.187 | 107 | 62 | 2 | 4 | 108 | 7 | 113 | 9.47e-16 | 77.8 |
| Msa0387830 | AT2G24790.1 | 50.877 | 57 | 28 | 0 | 347 | 403 | 222 | 278 | 4.77e-11 | 63.9 |
| Msa0387830 | AT5G15840.1 | 43.956 | 91 | 50 | 1 | 5 | 94 | 20 | 110 | 9.85e-15 | 75.5 |
| Msa0387830 | AT5G15840.2 | 43.956 | 91 | 50 | 1 | 5 | 94 | 20 | 110 | 1.60e-14 | 73.9 |
| Msa0387830 | AT5G15850.1 | 44.186 | 86 | 47 | 1 | 5 | 89 | 12 | 97 | 2.36e-14 | 74.3 |
| Msa0387830 | AT3G02380.1 | 40.000 | 100 | 53 | 2 | 5 | 97 | 16 | 115 | 1.36e-13 | 72.0 |
| Msa0387830 | AT3G02380.1 | 62.500 | 48 | 18 | 0 | 348 | 395 | 272 | 319 | 5.26e-12 | 67.0 |
| Msa0387830 | AT5G57660.1 | 30.216 | 139 | 92 | 2 | 5 | 142 | 22 | 156 | 2.59e-12 | 68.2 |
| Msa0387830 | AT2G31380.1 | 36.458 | 96 | 51 | 2 | 1 | 86 | 1 | 96 | 2.66e-12 | 66.6 |
| Msa0387830 | AT1G06040.2 | 37.500 | 96 | 50 | 2 | 1 | 86 | 1 | 96 | 3.70e-12 | 65.1 |
| Msa0387830 | AT1G06040.1 | 37.500 | 96 | 50 | 2 | 1 | 86 | 1 | 96 | 4.39e-12 | 66.2 |
| Msa0387830 | AT4G38960.1 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 6.97e-11 | 61.6 |
| Msa0387830 | AT4G38960.6 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 6.97e-11 | 61.6 |
| Msa0387830 | AT2G21320.1 | 39.286 | 84 | 43 | 1 | 1 | 76 | 1 | 84 | 6.97e-11 | 61.2 |
| Msa0387830 | AT1G75540.1 | 34.343 | 99 | 52 | 2 | 1 | 86 | 1 | 99 | 8.62e-11 | 63.2 |
Find 90 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGATTTAACAGTTTATT+TGG | 0.095234 | 3_1:+91927717 | Msa0387830:CDS |
| GTGGATTTAACAGTTTATTT+GGG | 0.284402 | 3_1:+91927718 | Msa0387830:CDS |
| CGCGGTTCTTTGCTTGATTC+GGG | 0.309949 | 3_1:-91927266 | None:intergenic |
| AGCTACTGATCTACCTGATT+TGG | 0.310422 | 3_1:+91927214 | Msa0387830:CDS |
| ACGCGGTTCTTTGCTTGATT+CGG | 0.339112 | 3_1:-91927267 | None:intergenic |
| GGATGAAATGGATATAAATA+TGG | 0.347846 | 3_1:+91927635 | Msa0387830:CDS |
| CGATTTCGATATGGATGAAA+TGG | 0.355447 | 3_1:+91927623 | Msa0387830:CDS |
| TACCTTTGGTACACATTCAT+TGG | 0.361210 | 3_1:-91927315 | None:intergenic |
| GATGCTGCAGTGCTGCATGC+TGG | 0.368884 | 3_1:-91928227 | None:intergenic |
| TATGTTCAGGGTTCATCAAT+TGG | 0.370264 | 3_1:+91928185 | Msa0387830:intron |
| ATTATACACTCAGTAGCTTC+TGG | 0.377897 | 3_1:-91928992 | None:intergenic |
| CAGCCGAACTTTCTTCGATA+TGG | 0.382675 | 3_1:+91927063 | Msa0387830:CDS |
| ACCGGCCCTTCACGCGCCTT+CGG | 0.385614 | 3_1:-91928924 | None:intergenic |
| TCATCATCATCGCTTGCGTC+AGG | 0.392076 | 3_1:-91927588 | None:intergenic |
| GATCGTTTGCCTCTTATGAT+TGG | 0.395417 | 3_1:-91927015 | None:intergenic |
| CACTTTGTCAGAATTGTGAT+TGG | 0.398736 | 3_1:+91926967 | Msa0387830:CDS |
| ATGCAGTTCACAACCTGCTT+TGG | 0.404101 | 3_1:+91926920 | Msa0387830:CDS |
| CCTCAGCAGCATTAGCATCT+TGG | 0.411307 | 3_1:-91927773 | None:intergenic |
| GTTCACAACCTGCTTTGGTT+AGG | 0.412214 | 3_1:+91926925 | Msa0387830:CDS |
| TAGCTTCTGGTTTGGCTCAA+AGG | 0.415587 | 3_1:-91928979 | None:intergenic |
| ACACTCAGTAGCTTCTGGTT+TGG | 0.416653 | 3_1:-91928987 | None:intergenic |
| CATTCATTGGTAGATCCATC+TGG | 0.421154 | 3_1:-91927302 | None:intergenic |
| AGCTTCTTCAATGCTTCTCA+TGG | 0.422785 | 3_1:+91928376 | Msa0387830:CDS |
| AGCTTCTGGTTTGGCTCAAA+GGG | 0.425533 | 3_1:-91928978 | None:intergenic |
| CTACATCTTCCAATCATAAG+AGG | 0.437225 | 3_1:+91927006 | Msa0387830:CDS |
| CAGAAAAGGAAAGGCTCGAT+TGG | 0.437549 | 3_1:-91928310 | None:intergenic |
| GCTCAAAGGGTCATAATCAT+AGG | 0.437780 | 3_1:-91928965 | None:intergenic |
| AGCATTAGCATCTTGGCAAT+TGG | 0.442849 | 3_1:-91927766 | None:intergenic |
| TGTCAGAATTGTGATTGGTT+AGG | 0.444655 | 3_1:+91926972 | Msa0387830:CDS |
| GCGAAAGACTTATCCAAATC+AGG | 0.451210 | 3_1:-91927227 | None:intergenic |
| TGTAGTTGTAGCTCATTCTC+AGG | 0.468722 | 3_1:-91928425 | None:intergenic |
| AGACCATATCGAAGAAAGTT+CGG | 0.481106 | 3_1:-91927066 | None:intergenic |
| TCCGAAGGCGCGTGAAGGGC+CGG | 0.483385 | 3_1:+91928923 | Msa0387830:CDS |
| TTTGCAGTAATACAAAGATT+CGG | 0.484517 | 3_1:-91928281 | None:intergenic |
| GGGGCAAAAGCCATGTCTGC+TGG | 0.484909 | 3_1:+91927738 | Msa0387830:CDS |
| TTCTCATGGGAGAACCTCCT+TGG | 0.487490 | 3_1:+91928390 | Msa0387830:CDS |
| TCATGAGTATTAATGAGAAT+AGG | 0.491713 | 3_1:+91927144 | Msa0387830:CDS |
| TCTGTATGGCGATTTCGATA+TGG | 0.492638 | 3_1:+91927614 | Msa0387830:CDS |
| AGAAAAGGAAAGGCTCGATT+GGG | 0.501130 | 3_1:-91928309 | None:intergenic |
| ATTAATGAAGACGGTGGTGC+TGG | 0.505210 | 3_1:+91928335 | Msa0387830:CDS |
| GCGTCAGGGCAATTTGTAGC+AGG | 0.511320 | 3_1:-91927573 | None:intergenic |
| GTCTTCATTAATACCAGAAA+AGG | 0.513355 | 3_1:-91928324 | None:intergenic |
| ATATGCCTCTCGCAAGGAAA+GGG | 0.514733 | 3_1:+91928894 | Msa0387830:CDS |
| TAATGAGAATAGGAGTGCTT+GGG | 0.516509 | 3_1:+91927154 | Msa0387830:CDS |
| CCCTTGCTCGAAGACATTCA+AGG | 0.516832 | 3_1:+91926880 | Msa0387830:CDS |
| TGATGTCCGAAGGCGCGTGA+AGG | 0.519956 | 3_1:+91928918 | Msa0387830:CDS |
| GTCATAATCATAGGCCTCGC+CGG | 0.520189 | 3_1:-91928956 | None:intergenic |
| TTAATGAGAATAGGAGTGCT+TGG | 0.522192 | 3_1:+91927153 | Msa0387830:CDS |
| CAAACGATCAATTGCTACTC+AGG | 0.524349 | 3_1:+91927029 | Msa0387830:CDS |
| CCTCGCCGGCTTTAACAAAC+CGG | 0.526175 | 3_1:-91928942 | None:intergenic |
| ACTACATGTGAGCAAGAACT+AGG | 0.526382 | 3_1:+91927119 | Msa0387830:CDS |
| AAGAAAGTTCGGCTGACGAA+GGG | 0.532257 | 3_1:-91927055 | None:intergenic |
| TCCTTGAATGTCTTCGAGCA+AGG | 0.533062 | 3_1:-91926881 | None:intergenic |
| GATGTCCGAAGGCGCGTGAA+GGG | 0.533693 | 3_1:+91928919 | Msa0387830:CDS |
| AAGGGCCGGTTTGTTAAAGC+CGG | 0.538044 | 3_1:+91928937 | Msa0387830:CDS |
| CGTATGCTCGACCGCCCAGA+TGG | 0.548257 | 3_1:+91927287 | Msa0387830:CDS |
| AATTGTGATTGGTTAGGTCA+TGG | 0.558365 | 3_1:+91926978 | Msa0387830:CDS |
| GAAGAAAGTTCGGCTGACGA+AGG | 0.562664 | 3_1:-91927056 | None:intergenic |
| ATTGGAATCTCCAGCAGACA+TGG | 0.566425 | 3_1:-91927748 | None:intergenic |
| GCTTCTTCAATGCTTCTCAT+GGG | 0.566506 | 3_1:+91928377 | Msa0387830:CDS |
| TCAGAACACCTAACCAAAGC+AGG | 0.567607 | 3_1:-91926933 | None:intergenic |
| CATGTAGTTTCACTCAGAGA+AGG | 0.576596 | 3_1:-91927104 | None:intergenic |
| CAAACATAGACACGCTGCAT+CGG | 0.578296 | 3_1:-91926826 | None:intergenic |
| TAGTGCTGTTATGCGATACA+AGG | 0.579883 | 3_1:+91928463 | Msa0387830:CDS |
| TACCAATGAATGTGTACCAA+AGG | 0.580738 | 3_1:+91927313 | Msa0387830:CDS |
| CCTTGAATGTCTTCGAGCAA+GGG | 0.583830 | 3_1:-91926880 | None:intergenic |
| GATATGCCTCTCGCAAGGAA+AGG | 0.583865 | 3_1:+91928893 | Msa0387830:CDS |
| TTCGGGCATTGAGAATGTAC+CGG | 0.588538 | 3_1:-91927249 | None:intergenic |
| TGGATTTAACAGTTTATTTG+GGG | 0.588596 | 3_1:+91927719 | Msa0387830:CDS |
| TTGTGGAGATCAGAGGTCGA+TGG | 0.588789 | 3_1:+91926791 | Msa0387830:CDS |
| GATTTGGATAAGTCTTTCGC+CGG | 0.589605 | 3_1:+91927230 | Msa0387830:CDS |
| CATTAATACCAGAAAAGGAA+AGG | 0.592524 | 3_1:-91928319 | None:intergenic |
| AGGAAAGGGCTGATGTCCGA+AGG | 0.595717 | 3_1:+91928908 | Msa0387830:CDS |
| ATGTAGTTTCACTCAGAGAA+GGG | 0.599442 | 3_1:-91927103 | None:intergenic |
| CCAAGATGCTAATGCTGCTG+AGG | 0.599606 | 3_1:+91927773 | Msa0387830:CDS |
| CATCATCATCGCTTGCGTCA+GGG | 0.601417 | 3_1:-91927587 | None:intergenic |
| ATCAGCCCTTTCCTTGCGAG+AGG | 0.604664 | 3_1:-91928899 | None:intergenic |
| ATTCATTGGTAGATCCATCT+GGG | 0.610627 | 3_1:-91927301 | None:intergenic |
| AAAGCTCTTCAGAATGAGTG+AGG | 0.617795 | 3_1:-91927686 | None:intergenic |
| GCTGGAGACTATCAAGATTG+TGG | 0.619737 | 3_1:+91928353 | Msa0387830:CDS |
| AGTGAGATATGCCTCTCGCA+AGG | 0.625277 | 3_1:+91928888 | Msa0387830:CDS |
| TCTGGTATTAATGAAGACGG+TGG | 0.629157 | 3_1:+91928329 | Msa0387830:CDS |
| CCGGTTTGTTAAAGCCGGCG+AGG | 0.638136 | 3_1:+91928942 | Msa0387830:CDS |
| TCTGGGCGGTCGAGCATACG+CGG | 0.641340 | 3_1:-91927284 | None:intergenic |
| TCAGGACAAGTGTTTAACCA+AGG | 0.666255 | 3_1:-91928407 | None:intergenic |
| AAGCTCTTCAGAATGAGTGA+GGG | 0.667176 | 3_1:-91927685 | None:intergenic |
| GGACAAGTGTTTAACCAAGG+AGG | 0.698616 | 3_1:-91928404 | None:intergenic |
| ATCGCATAACAGCACTACAG+CGG | 0.703445 | 3_1:-91928457 | None:intergenic |
| ATAGACACGCTGCATCGGAG+CGG | 0.713055 | 3_1:-91926821 | None:intergenic |
| CATTGGTAGATCCATCTGGG+CGG | 0.761162 | 3_1:-91927298 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATTGTTATTATCTTTT+AGG | + | chr3_1:91928802-91928821 | Msa0387830:intron | 15.0% |
| !!! | ATTGATTGTTATTATCTTTT+AGG | + | chr3_1:91928802-91928821 | Msa0387830:intron | 15.0% |
| !! | TCTAATTGGATAAAAATGTA+AGG | - | chr3_1:91927517-91927536 | None:intergenic | 20.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | - | chr3_1:91927940-91927959 | None:intergenic | 20.0% |
| !!! | TACATCTAATTTTTATGTTC+AGG | + | chr3_1:91928172-91928191 | Msa0387830:intron | 20.0% |
| !!! | ACATCTAATTTTTATGTTCA+GGG | + | chr3_1:91928173-91928192 | Msa0387830:intron | 20.0% |
| !! | TCTAATTGGATAAAAATGTA+AGG | - | chr3_1:91927517-91927536 | None:intergenic | 20.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | - | chr3_1:91927940-91927959 | None:intergenic | 20.0% |
| !!! | TACATCTAATTTTTATGTTC+AGG | + | chr3_1:91928172-91928191 | Msa0387830:intron | 20.0% |
| !!! | ACATCTAATTTTTATGTTCA+GGG | + | chr3_1:91928173-91928192 | Msa0387830:intron | 20.0% |
| ! | TCATGAGTATTAATGAGAAT+AGG | + | chr3_1:91927144-91927163 | Msa0387830:CDS | 25.0% |
| ! | AACATTCAGATATATACCTT+TGG | - | chr3_1:91927332-91927351 | None:intergenic | 25.0% |
| ! | GGATGAAATGGATATAAATA+TGG | + | chr3_1:91927635-91927654 | Msa0387830:CDS | 25.0% |
| ! | GTGGATTTAACAGTTTATTT+GGG | + | chr3_1:91927718-91927737 | Msa0387830:CDS | 25.0% |
| ! | TGGATTTAACAGTTTATTTG+GGG | + | chr3_1:91927719-91927738 | Msa0387830:CDS | 25.0% |
| ! | TTATATATTAGCATAAGCAC+TGG | + | chr3_1:91927871-91927890 | Msa0387830:intron | 25.0% |
| ! | ATACAAATTGTTTACACCTT+CGG | + | chr3_1:91928122-91928141 | Msa0387830:intron | 25.0% |
| ! | TTTGCAGTAATACAAAGATT+CGG | - | chr3_1:91928284-91928303 | None:intergenic | 25.0% |
| !!! | TTTTCTGGTATTAATGAAGA+CGG | + | chr3_1:91928326-91928345 | Msa0387830:CDS | 25.0% |
| ! | ACTTTCCCTTAAAAGATATA+AGG | + | chr3_1:91928618-91928637 | Msa0387830:intron | 25.0% |
| !! | TCAGACCTTATATCTTTTAA+GGG | - | chr3_1:91928626-91928645 | None:intergenic | 25.0% |
| !! | TTCAGACCTTATATCTTTTA+AGG | - | chr3_1:91928627-91928646 | None:intergenic | 25.0% |
| ! | GGTAACATGATAATCAAATT+AGG | - | chr3_1:91928702-91928721 | None:intergenic | 25.0% |
| ! | TCATGAGTATTAATGAGAAT+AGG | + | chr3_1:91927144-91927163 | Msa0387830:CDS | 25.0% |
| ! | AACATTCAGATATATACCTT+TGG | - | chr3_1:91927332-91927351 | None:intergenic | 25.0% |
| ! | GGATGAAATGGATATAAATA+TGG | + | chr3_1:91927635-91927654 | Msa0387830:CDS | 25.0% |
| ! | GTGGATTTAACAGTTTATTT+GGG | + | chr3_1:91927718-91927737 | Msa0387830:CDS | 25.0% |
| ! | TGGATTTAACAGTTTATTTG+GGG | + | chr3_1:91927719-91927738 | Msa0387830:CDS | 25.0% |
| ! | TTATATATTAGCATAAGCAC+TGG | + | chr3_1:91927871-91927890 | Msa0387830:intron | 25.0% |
| ! | ATACAAATTGTTTACACCTT+CGG | + | chr3_1:91928122-91928141 | Msa0387830:intron | 25.0% |
| ! | TTTGCAGTAATACAAAGATT+CGG | - | chr3_1:91928284-91928303 | None:intergenic | 25.0% |
| !!! | TTTTCTGGTATTAATGAAGA+CGG | + | chr3_1:91928326-91928345 | Msa0387830:CDS | 25.0% |
| ! | ACTTTCCCTTAAAAGATATA+AGG | + | chr3_1:91928618-91928637 | Msa0387830:intron | 25.0% |
| !! | TCAGACCTTATATCTTTTAA+GGG | - | chr3_1:91928626-91928645 | None:intergenic | 25.0% |
| !! | TTCAGACCTTATATCTTTTA+AGG | - | chr3_1:91928627-91928646 | None:intergenic | 25.0% |
| ! | GGTAACATGATAATCAAATT+AGG | - | chr3_1:91928702-91928721 | None:intergenic | 25.0% |
| ! | GGTTACATATGTGATTTTTG+TGG | + | chr3_1:91926774-91926793 | Msa0387830:CDS | 30.0% |
| ATGATTAAGCTATTGCTCTA+TGG | - | chr3_1:91927412-91927431 | None:intergenic | 30.0% | |
| TAGAGCAATAGCTTAATCAT+TGG | + | chr3_1:91927412-91927431 | Msa0387830:intron | 30.0% | |
| GGATTTCAATTATAAACCTC+AGG | - | chr3_1:91927496-91927515 | None:intergenic | 30.0% | |
| ATGAGAGTTAGCTATCTAAT+TGG | - | chr3_1:91927531-91927550 | None:intergenic | 30.0% | |
| ! | GAGAACTATGATGAACTTTT+TGG | + | chr3_1:91927657-91927676 | Msa0387830:CDS | 30.0% |
| !! | CTATGATGAACTTTTTGGTA+TGG | + | chr3_1:91927662-91927681 | Msa0387830:CDS | 30.0% |
| !! | TCTGAAGAGCTTTTTGAAAA+TGG | + | chr3_1:91927696-91927715 | Msa0387830:CDS | 30.0% |
| ! | GGTGGATTTAACAGTTTATT+TGG | + | chr3_1:91927717-91927736 | Msa0387830:CDS | 30.0% |
| ACGCAATCAAATGATAGAAA+AGG | - | chr3_1:91927837-91927856 | None:intergenic | 30.0% | |
| TTTCTATCATTTGATTGCGT+TGG | + | chr3_1:91927837-91927856 | Msa0387830:intron | 30.0% | |
| ! | CTGTTTTCATAAGCTTATCT+TGG | - | chr3_1:91927975-91927994 | None:intergenic | 30.0% |
| !! | TTCAGTTTTAGTGCTCAATA+TGG | - | chr3_1:91928261-91928280 | None:intergenic | 30.0% |
| CATTAATACCAGAAAAGGAA+AGG | - | chr3_1:91928322-91928341 | None:intergenic | 30.0% | |
| GTCTTCATTAATACCAGAAA+AGG | - | chr3_1:91928327-91928346 | None:intergenic | 30.0% | |
| AGAGGAAAAACACATTCAAT+AGG | - | chr3_1:91928561-91928580 | None:intergenic | 30.0% | |
| ! | GCGTTTTTCATTCAAAAAAG+AGG | - | chr3_1:91928579-91928598 | None:intergenic | 30.0% |
| TGAAAAGAGTTTCTAAACAG+TGG | + | chr3_1:91928643-91928662 | Msa0387830:intron | 30.0% | |
| TGCTAACAAGTTAGGAATTA+CGG | + | chr3_1:91928727-91928746 | Msa0387830:intron | 30.0% | |
| ! | GGTTACATATGTGATTTTTG+TGG | + | chr3_1:91926774-91926793 | Msa0387830:CDS | 30.0% |
| ATGATTAAGCTATTGCTCTA+TGG | - | chr3_1:91927412-91927431 | None:intergenic | 30.0% | |
| TAGAGCAATAGCTTAATCAT+TGG | + | chr3_1:91927412-91927431 | Msa0387830:intron | 30.0% | |
| GGATTTCAATTATAAACCTC+AGG | - | chr3_1:91927496-91927515 | None:intergenic | 30.0% | |
| ATGAGAGTTAGCTATCTAAT+TGG | - | chr3_1:91927531-91927550 | None:intergenic | 30.0% | |
| ! | GAGAACTATGATGAACTTTT+TGG | + | chr3_1:91927657-91927676 | Msa0387830:CDS | 30.0% |
| !! | CTATGATGAACTTTTTGGTA+TGG | + | chr3_1:91927662-91927681 | Msa0387830:CDS | 30.0% |
| !! | TCTGAAGAGCTTTTTGAAAA+TGG | + | chr3_1:91927696-91927715 | Msa0387830:CDS | 30.0% |
| ! | GGTGGATTTAACAGTTTATT+TGG | + | chr3_1:91927717-91927736 | Msa0387830:CDS | 30.0% |
| ACGCAATCAAATGATAGAAA+AGG | - | chr3_1:91927837-91927856 | None:intergenic | 30.0% | |
| TTTCTATCATTTGATTGCGT+TGG | + | chr3_1:91927837-91927856 | Msa0387830:intron | 30.0% | |
| ! | CTGTTTTCATAAGCTTATCT+TGG | - | chr3_1:91927975-91927994 | None:intergenic | 30.0% |
| !! | TTCAGTTTTAGTGCTCAATA+TGG | - | chr3_1:91928261-91928280 | None:intergenic | 30.0% |
| CATTAATACCAGAAAAGGAA+AGG | - | chr3_1:91928322-91928341 | None:intergenic | 30.0% | |
| GTCTTCATTAATACCAGAAA+AGG | - | chr3_1:91928327-91928346 | None:intergenic | 30.0% | |
| AGAGGAAAAACACATTCAAT+AGG | - | chr3_1:91928561-91928580 | None:intergenic | 30.0% | |
| ! | GCGTTTTTCATTCAAAAAAG+AGG | - | chr3_1:91928579-91928598 | None:intergenic | 30.0% |
| TGAAAAGAGTTTCTAAACAG+TGG | + | chr3_1:91928643-91928662 | Msa0387830:intron | 30.0% | |
| TGCTAACAAGTTAGGAATTA+CGG | + | chr3_1:91928727-91928746 | Msa0387830:intron | 30.0% | |
| CACTTTGTCAGAATTGTGAT+TGG | + | chr3_1:91926967-91926986 | Msa0387830:CDS | 35.0% | |
| ! | TGTCAGAATTGTGATTGGTT+AGG | + | chr3_1:91926972-91926991 | Msa0387830:CDS | 35.0% |
| ! | AATTGTGATTGGTTAGGTCA+TGG | + | chr3_1:91926978-91926997 | Msa0387830:CDS | 35.0% |
| CTACATCTTCCAATCATAAG+AGG | + | chr3_1:91927006-91927025 | Msa0387830:CDS | 35.0% | |
| AGACCATATCGAAGAAAGTT+CGG | - | chr3_1:91927069-91927088 | None:intergenic | 35.0% | |
| ATGTAGTTTCACTCAGAGAA+GGG | - | chr3_1:91927106-91927125 | None:intergenic | 35.0% | |
| !! | TTAATGAGAATAGGAGTGCT+TGG | + | chr3_1:91927153-91927172 | Msa0387830:CDS | 35.0% |
| !! | TAATGAGAATAGGAGTGCTT+GGG | + | chr3_1:91927154-91927173 | Msa0387830:CDS | 35.0% |
| ! | TCAGACACGTTCTGATTTTT+CGG | - | chr3_1:91927185-91927204 | None:intergenic | 35.0% |
| ATTCATTGGTAGATCCATCT+GGG | - | chr3_1:91927304-91927323 | None:intergenic | 35.0% | |
| TACCAATGAATGTGTACCAA+AGG | + | chr3_1:91927313-91927332 | Msa0387830:CDS | 35.0% | |
| TACCTTTGGTACACATTCAT+TGG | - | chr3_1:91927318-91927337 | None:intergenic | 35.0% | |
| !! | AACTCTCATTGTTGATTTCC+AGG | + | chr3_1:91927542-91927561 | Msa0387830:intron | 35.0% |
| ! | GATGATGATGATGATCTGTA+TGG | + | chr3_1:91927600-91927619 | Msa0387830:CDS | 35.0% |
| CGATTTCGATATGGATGAAA+TGG | + | chr3_1:91927623-91927642 | Msa0387830:CDS | 35.0% | |
| !! | GAAGAGCTTTTTGAAAATGG+TGG | + | chr3_1:91927699-91927718 | Msa0387830:CDS | 35.0% |
| AGCTTATCTTGGAGAACTTA+TGG | - | chr3_1:91927964-91927983 | None:intergenic | 35.0% | |
| TAGTAGACATAAGCTCTGTT+TGG | - | chr3_1:91928083-91928102 | None:intergenic | 35.0% | |
| ACAGAGCTTATGTCTACTAT+TGG | + | chr3_1:91928084-91928103 | Msa0387830:intron | 35.0% | |
| CTCTACTTAAAATCAACCGA+AGG | - | chr3_1:91928141-91928160 | None:intergenic | 35.0% | |
| TATGTTCAGGGTTCATCAAT+TGG | + | chr3_1:91928185-91928204 | Msa0387830:intron | 35.0% | |
| TGAATGAAAAACGCCTAACA+AGG | + | chr3_1:91928585-91928604 | Msa0387830:intron | 35.0% | |
| GAATGAAAAACGCCTAACAA+GGG | + | chr3_1:91928586-91928605 | Msa0387830:intron | 35.0% | |
| GCATTACTCACTTTACAAAC+TGG | + | chr3_1:91928665-91928684 | Msa0387830:intron | 35.0% | |
| !! | TCCTAACTTGTTAGCAAAGA+CGG | - | chr3_1:91928723-91928742 | None:intergenic | 35.0% |
| GCTAACAAGTTAGGAATTAC+GGG | + | chr3_1:91928728-91928747 | Msa0387830:intron | 35.0% | |
| CACTTTGTCAGAATTGTGAT+TGG | + | chr3_1:91926967-91926986 | Msa0387830:CDS | 35.0% | |
| ! | TGTCAGAATTGTGATTGGTT+AGG | + | chr3_1:91926972-91926991 | Msa0387830:CDS | 35.0% |
| ! | AATTGTGATTGGTTAGGTCA+TGG | + | chr3_1:91926978-91926997 | Msa0387830:CDS | 35.0% |
| CTACATCTTCCAATCATAAG+AGG | + | chr3_1:91927006-91927025 | Msa0387830:CDS | 35.0% | |
| AGACCATATCGAAGAAAGTT+CGG | - | chr3_1:91927069-91927088 | None:intergenic | 35.0% | |
| ATGTAGTTTCACTCAGAGAA+GGG | - | chr3_1:91927106-91927125 | None:intergenic | 35.0% | |
| !! | TTAATGAGAATAGGAGTGCT+TGG | + | chr3_1:91927153-91927172 | Msa0387830:CDS | 35.0% |
| !! | TAATGAGAATAGGAGTGCTT+GGG | + | chr3_1:91927154-91927173 | Msa0387830:CDS | 35.0% |
| ! | TCAGACACGTTCTGATTTTT+CGG | - | chr3_1:91927185-91927204 | None:intergenic | 35.0% |
| ATTCATTGGTAGATCCATCT+GGG | - | chr3_1:91927304-91927323 | None:intergenic | 35.0% | |
| TACCAATGAATGTGTACCAA+AGG | + | chr3_1:91927313-91927332 | Msa0387830:CDS | 35.0% | |
| TACCTTTGGTACACATTCAT+TGG | - | chr3_1:91927318-91927337 | None:intergenic | 35.0% | |
| !! | AACTCTCATTGTTGATTTCC+AGG | + | chr3_1:91927542-91927561 | Msa0387830:intron | 35.0% |
| ! | GATGATGATGATGATCTGTA+TGG | + | chr3_1:91927600-91927619 | Msa0387830:CDS | 35.0% |
| CGATTTCGATATGGATGAAA+TGG | + | chr3_1:91927623-91927642 | Msa0387830:CDS | 35.0% | |
| !! | GAAGAGCTTTTTGAAAATGG+TGG | + | chr3_1:91927699-91927718 | Msa0387830:CDS | 35.0% |
| AGCTTATCTTGGAGAACTTA+TGG | - | chr3_1:91927964-91927983 | None:intergenic | 35.0% | |
| TAGTAGACATAAGCTCTGTT+TGG | - | chr3_1:91928083-91928102 | None:intergenic | 35.0% | |
| ACAGAGCTTATGTCTACTAT+TGG | + | chr3_1:91928084-91928103 | Msa0387830:intron | 35.0% | |
| CTCTACTTAAAATCAACCGA+AGG | - | chr3_1:91928141-91928160 | None:intergenic | 35.0% | |
| TATGTTCAGGGTTCATCAAT+TGG | + | chr3_1:91928185-91928204 | Msa0387830:intron | 35.0% | |
| TGAATGAAAAACGCCTAACA+AGG | + | chr3_1:91928585-91928604 | Msa0387830:intron | 35.0% | |
| GAATGAAAAACGCCTAACAA+GGG | + | chr3_1:91928586-91928605 | Msa0387830:intron | 35.0% | |
| GCATTACTCACTTTACAAAC+TGG | + | chr3_1:91928665-91928684 | Msa0387830:intron | 35.0% | |
| !! | TCCTAACTTGTTAGCAAAGA+CGG | - | chr3_1:91928723-91928742 | None:intergenic | 35.0% |
| GCTAACAAGTTAGGAATTAC+GGG | + | chr3_1:91928728-91928747 | Msa0387830:intron | 35.0% | |
| ! | GTGATTTTTGTGGAGATCAG+AGG | + | chr3_1:91926784-91926803 | Msa0387830:CDS | 40.0% |
| GATCGTTTGCCTCTTATGAT+TGG | - | chr3_1:91927018-91927037 | None:intergenic | 40.0% | |
| CAAACGATCAATTGCTACTC+AGG | + | chr3_1:91927029-91927048 | Msa0387830:CDS | 40.0% | |
| CATGTAGTTTCACTCAGAGA+AGG | - | chr3_1:91927107-91927126 | None:intergenic | 40.0% | |
| ACTACATGTGAGCAAGAACT+AGG | + | chr3_1:91927119-91927138 | Msa0387830:CDS | 40.0% | |
| AGCTACTGATCTACCTGATT+TGG | + | chr3_1:91927214-91927233 | Msa0387830:CDS | 40.0% | |
| GCGAAAGACTTATCCAAATC+AGG | - | chr3_1:91927230-91927249 | None:intergenic | 40.0% | |
| GATTTGGATAAGTCTTTCGC+CGG | + | chr3_1:91927230-91927249 | Msa0387830:CDS | 40.0% | |
| CATTCATTGGTAGATCCATC+TGG | - | chr3_1:91927305-91927324 | None:intergenic | 40.0% | |
| TAAACGAGTTTCACTACCTG+AGG | + | chr3_1:91927477-91927496 | Msa0387830:intron | 40.0% | |
| TCTGTATGGCGATTTCGATA+TGG | + | chr3_1:91927614-91927633 | Msa0387830:CDS | 40.0% | |
| AAGCTCTTCAGAATGAGTGA+GGG | - | chr3_1:91927688-91927707 | None:intergenic | 40.0% | |
| AAAGCTCTTCAGAATGAGTG+AGG | - | chr3_1:91927689-91927708 | None:intergenic | 40.0% | |
| AGCATTAGCATCTTGGCAAT+TGG | - | chr3_1:91927769-91927788 | None:intergenic | 40.0% | |
| AGAAAAGGAAAGGCTCGATT+GGG | - | chr3_1:91928312-91928331 | None:intergenic | 40.0% | |
| TCTGGTATTAATGAAGACGG+TGG | + | chr3_1:91928329-91928348 | Msa0387830:CDS | 40.0% | |
| AGCTTCTTCAATGCTTCTCA+TGG | + | chr3_1:91928376-91928395 | Msa0387830:CDS | 40.0% | |
| GCTTCTTCAATGCTTCTCAT+GGG | + | chr3_1:91928377-91928396 | Msa0387830:CDS | 40.0% | |
| TCAGGACAAGTGTTTAACCA+AGG | - | chr3_1:91928410-91928429 | None:intergenic | 40.0% | |
| TGTAGTTGTAGCTCATTCTC+AGG | - | chr3_1:91928428-91928447 | None:intergenic | 40.0% | |
| ! | TAGTGCTGTTATGCGATACA+AGG | + | chr3_1:91928463-91928482 | Msa0387830:CDS | 40.0% |
| ACCGTCTTTGCTAACAAGTT+AGG | + | chr3_1:91928719-91928738 | Msa0387830:intron | 40.0% | |
| GCTCAAAGGGTCATAATCAT+AGG | - | chr3_1:91928968-91928987 | None:intergenic | 40.0% | |
| ! | GTGATTTTTGTGGAGATCAG+AGG | + | chr3_1:91926784-91926803 | Msa0387830:CDS | 40.0% |
| GATCGTTTGCCTCTTATGAT+TGG | - | chr3_1:91927018-91927037 | None:intergenic | 40.0% | |
| CAAACGATCAATTGCTACTC+AGG | + | chr3_1:91927029-91927048 | Msa0387830:CDS | 40.0% | |
| CATGTAGTTTCACTCAGAGA+AGG | - | chr3_1:91927107-91927126 | None:intergenic | 40.0% | |
| ACTACATGTGAGCAAGAACT+AGG | + | chr3_1:91927119-91927138 | Msa0387830:CDS | 40.0% | |
| AGCTACTGATCTACCTGATT+TGG | + | chr3_1:91927214-91927233 | Msa0387830:CDS | 40.0% | |
| GCGAAAGACTTATCCAAATC+AGG | - | chr3_1:91927230-91927249 | None:intergenic | 40.0% | |
| GATTTGGATAAGTCTTTCGC+CGG | + | chr3_1:91927230-91927249 | Msa0387830:CDS | 40.0% | |
| CATTCATTGGTAGATCCATC+TGG | - | chr3_1:91927305-91927324 | None:intergenic | 40.0% | |
| TAAACGAGTTTCACTACCTG+AGG | + | chr3_1:91927477-91927496 | Msa0387830:intron | 40.0% | |
| TCTGTATGGCGATTTCGATA+TGG | + | chr3_1:91927614-91927633 | Msa0387830:CDS | 40.0% | |
| AAGCTCTTCAGAATGAGTGA+GGG | - | chr3_1:91927688-91927707 | None:intergenic | 40.0% | |
| AAAGCTCTTCAGAATGAGTG+AGG | - | chr3_1:91927689-91927708 | None:intergenic | 40.0% | |
| AGCATTAGCATCTTGGCAAT+TGG | - | chr3_1:91927769-91927788 | None:intergenic | 40.0% | |
| AGAAAAGGAAAGGCTCGATT+GGG | - | chr3_1:91928312-91928331 | None:intergenic | 40.0% | |
| TCTGGTATTAATGAAGACGG+TGG | + | chr3_1:91928329-91928348 | Msa0387830:CDS | 40.0% | |
| AGCTTCTTCAATGCTTCTCA+TGG | + | chr3_1:91928376-91928395 | Msa0387830:CDS | 40.0% | |
| GCTTCTTCAATGCTTCTCAT+GGG | + | chr3_1:91928377-91928396 | Msa0387830:CDS | 40.0% | |
| TCAGGACAAGTGTTTAACCA+AGG | - | chr3_1:91928410-91928429 | None:intergenic | 40.0% | |
| TGTAGTTGTAGCTCATTCTC+AGG | - | chr3_1:91928428-91928447 | None:intergenic | 40.0% | |
| ! | TAGTGCTGTTATGCGATACA+AGG | + | chr3_1:91928463-91928482 | Msa0387830:CDS | 40.0% |
| ACCGTCTTTGCTAACAAGTT+AGG | + | chr3_1:91928719-91928738 | Msa0387830:intron | 40.0% | |
| GCTCAAAGGGTCATAATCAT+AGG | - | chr3_1:91928968-91928987 | None:intergenic | 40.0% | |
| CAAACATAGACACGCTGCAT+CGG | - | chr3_1:91926829-91926848 | None:intergenic | 45.0% | |
| CCTTGAATGTCTTCGAGCAA+GGG | - | chr3_1:91926883-91926902 | None:intergenic | 45.0% | |
| TCCTTGAATGTCTTCGAGCA+AGG | - | chr3_1:91926884-91926903 | None:intergenic | 45.0% | |
| ATGCAGTTCACAACCTGCTT+TGG | + | chr3_1:91926920-91926939 | Msa0387830:CDS | 45.0% | |
| GTTCACAACCTGCTTTGGTT+AGG | + | chr3_1:91926925-91926944 | Msa0387830:CDS | 45.0% | |
| TCAGAACACCTAACCAAAGC+AGG | - | chr3_1:91926936-91926955 | None:intergenic | 45.0% | |
| AAGAAAGTTCGGCTGACGAA+GGG | - | chr3_1:91927058-91927077 | None:intergenic | 45.0% | |
| CAGCCGAACTTTCTTCGATA+TGG | + | chr3_1:91927063-91927082 | Msa0387830:CDS | 45.0% | |
| !! | TTCGGGCATTGAGAATGTAC+CGG | - | chr3_1:91927252-91927271 | None:intergenic | 45.0% |
| ACGCGGTTCTTTGCTTGATT+CGG | - | chr3_1:91927270-91927289 | None:intergenic | 45.0% | |
| AGCTTAATCATTGGCGAAGC+AGG | + | chr3_1:91927421-91927440 | Msa0387830:intron | 45.0% | |
| TTGTAGCAGGACAGTATACC+TGG | - | chr3_1:91927563-91927582 | None:intergenic | 45.0% | |
| ATTGGAATCTCCAGCAGACA+TGG | - | chr3_1:91927751-91927770 | None:intergenic | 45.0% | |
| !! | TAAGCACTGGTGAGACTGTT+TGG | + | chr3_1:91927884-91927903 | Msa0387830:intron | 45.0% |
| !! | AAGCACTGGTGAGACTGTTT+GGG | + | chr3_1:91927885-91927904 | Msa0387830:intron | 45.0% |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr3_1:91927896-91927915 | Msa0387830:intron | 45.0% | |
| CAGAAAAGGAAAGGCTCGAT+TGG | - | chr3_1:91928313-91928332 | None:intergenic | 45.0% | |
| ! | CAATCGAGCCTTTCCTTTTC+TGG | + | chr3_1:91928311-91928330 | Msa0387830:CDS | 45.0% |
| ATTAATGAAGACGGTGGTGC+TGG | + | chr3_1:91928335-91928354 | Msa0387830:CDS | 45.0% | |
| GCTGGAGACTATCAAGATTG+TGG | + | chr3_1:91928353-91928372 | Msa0387830:CDS | 45.0% | |
| GGACAAGTGTTTAACCAAGG+AGG | - | chr3_1:91928407-91928426 | None:intergenic | 45.0% | |
| ATCGCATAACAGCACTACAG+CGG | - | chr3_1:91928460-91928479 | None:intergenic | 45.0% | |
| TGAAAAACGCCTAACAAGGG+TGG | + | chr3_1:91928589-91928608 | Msa0387830:intron | 45.0% | |
| GAAAAACGCCTAACAAGGGT+GGG | + | chr3_1:91928590-91928609 | Msa0387830:intron | 45.0% | |
| AAAAACGCCTAACAAGGGTG+GGG | + | chr3_1:91928591-91928610 | Msa0387830:intron | 45.0% | |
| ATATGCCTCTCGCAAGGAAA+GGG | + | chr3_1:91928894-91928913 | Msa0387830:CDS | 45.0% | |
| !! | AGCTTCTGGTTTGGCTCAAA+GGG | - | chr3_1:91928981-91929000 | None:intergenic | 45.0% |
| !! | TAGCTTCTGGTTTGGCTCAA+AGG | - | chr3_1:91928982-91929001 | None:intergenic | 45.0% |
| CAAACATAGACACGCTGCAT+CGG | - | chr3_1:91926829-91926848 | None:intergenic | 45.0% | |
| CCTTGAATGTCTTCGAGCAA+GGG | - | chr3_1:91926883-91926902 | None:intergenic | 45.0% | |
| TCCTTGAATGTCTTCGAGCA+AGG | - | chr3_1:91926884-91926903 | None:intergenic | 45.0% | |
| ATGCAGTTCACAACCTGCTT+TGG | + | chr3_1:91926920-91926939 | Msa0387830:CDS | 45.0% | |
| GTTCACAACCTGCTTTGGTT+AGG | + | chr3_1:91926925-91926944 | Msa0387830:CDS | 45.0% | |
| TCAGAACACCTAACCAAAGC+AGG | - | chr3_1:91926936-91926955 | None:intergenic | 45.0% | |
| AAGAAAGTTCGGCTGACGAA+GGG | - | chr3_1:91927058-91927077 | None:intergenic | 45.0% | |
| CAGCCGAACTTTCTTCGATA+TGG | + | chr3_1:91927063-91927082 | Msa0387830:CDS | 45.0% | |
| !! | TTCGGGCATTGAGAATGTAC+CGG | - | chr3_1:91927252-91927271 | None:intergenic | 45.0% |
| ACGCGGTTCTTTGCTTGATT+CGG | - | chr3_1:91927270-91927289 | None:intergenic | 45.0% | |
| AGCTTAATCATTGGCGAAGC+AGG | + | chr3_1:91927421-91927440 | Msa0387830:intron | 45.0% | |
| TTGTAGCAGGACAGTATACC+TGG | - | chr3_1:91927563-91927582 | None:intergenic | 45.0% | |
| ATTGGAATCTCCAGCAGACA+TGG | - | chr3_1:91927751-91927770 | None:intergenic | 45.0% | |
| !! | TAAGCACTGGTGAGACTGTT+TGG | + | chr3_1:91927884-91927903 | Msa0387830:intron | 45.0% |
| !! | AAGCACTGGTGAGACTGTTT+GGG | + | chr3_1:91927885-91927904 | Msa0387830:intron | 45.0% |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr3_1:91927896-91927915 | Msa0387830:intron | 45.0% | |
| CAGAAAAGGAAAGGCTCGAT+TGG | - | chr3_1:91928313-91928332 | None:intergenic | 45.0% | |
| ! | CAATCGAGCCTTTCCTTTTC+TGG | + | chr3_1:91928311-91928330 | Msa0387830:CDS | 45.0% |
| ATTAATGAAGACGGTGGTGC+TGG | + | chr3_1:91928335-91928354 | Msa0387830:CDS | 45.0% | |
| GCTGGAGACTATCAAGATTG+TGG | + | chr3_1:91928353-91928372 | Msa0387830:CDS | 45.0% | |
| GGACAAGTGTTTAACCAAGG+AGG | - | chr3_1:91928407-91928426 | None:intergenic | 45.0% | |
| ATCGCATAACAGCACTACAG+CGG | - | chr3_1:91928460-91928479 | None:intergenic | 45.0% | |
| TGAAAAACGCCTAACAAGGG+TGG | + | chr3_1:91928589-91928608 | Msa0387830:intron | 45.0% | |
| GAAAAACGCCTAACAAGGGT+GGG | + | chr3_1:91928590-91928609 | Msa0387830:intron | 45.0% | |
| AAAAACGCCTAACAAGGGTG+GGG | + | chr3_1:91928591-91928610 | Msa0387830:intron | 45.0% | |
| ATATGCCTCTCGCAAGGAAA+GGG | + | chr3_1:91928894-91928913 | Msa0387830:CDS | 45.0% | |
| !! | AGCTTCTGGTTTGGCTCAAA+GGG | - | chr3_1:91928981-91929000 | None:intergenic | 45.0% |
| !! | TAGCTTCTGGTTTGGCTCAA+AGG | - | chr3_1:91928982-91929001 | None:intergenic | 45.0% |
| TTGTGGAGATCAGAGGTCGA+TGG | + | chr3_1:91926791-91926810 | Msa0387830:CDS | 50.0% | |
| CCCTTGCTCGAAGACATTCA+AGG | + | chr3_1:91926880-91926899 | Msa0387830:CDS | 50.0% | |
| GAAGAAAGTTCGGCTGACGA+AGG | - | chr3_1:91927059-91927078 | None:intergenic | 50.0% | |
| CGCGGTTCTTTGCTTGATTC+GGG | - | chr3_1:91927269-91927288 | None:intergenic | 50.0% | |
| CATTGGTAGATCCATCTGGG+CGG | - | chr3_1:91927301-91927320 | None:intergenic | 50.0% | |
| CATCATCATCGCTTGCGTCA+GGG | - | chr3_1:91927590-91927609 | None:intergenic | 50.0% | |
| TCATCATCATCGCTTGCGTC+AGG | - | chr3_1:91927591-91927610 | None:intergenic | 50.0% | |
| CCTCAGCAGCATTAGCATCT+TGG | - | chr3_1:91927776-91927795 | None:intergenic | 50.0% | |
| CCAAGATGCTAATGCTGCTG+AGG | + | chr3_1:91927773-91927792 | Msa0387830:CDS | 50.0% | |
| TTCTCATGGGAGAACCTCCT+TGG | + | chr3_1:91928390-91928409 | Msa0387830:CDS | 50.0% | |
| AGTGAGATATGCCTCTCGCA+AGG | + | chr3_1:91928888-91928907 | Msa0387830:CDS | 50.0% | |
| GATATGCCTCTCGCAAGGAA+AGG | + | chr3_1:91928893-91928912 | Msa0387830:CDS | 50.0% | |
| !! | AAGGGCCGGTTTGTTAAAGC+CGG | + | chr3_1:91928937-91928956 | Msa0387830:CDS | 50.0% |
| GTCATAATCATAGGCCTCGC+CGG | - | chr3_1:91928959-91928978 | None:intergenic | 50.0% | |
| TTGTGGAGATCAGAGGTCGA+TGG | + | chr3_1:91926791-91926810 | Msa0387830:CDS | 50.0% | |
| CCCTTGCTCGAAGACATTCA+AGG | + | chr3_1:91926880-91926899 | Msa0387830:CDS | 50.0% | |
| GAAGAAAGTTCGGCTGACGA+AGG | - | chr3_1:91927059-91927078 | None:intergenic | 50.0% | |
| CGCGGTTCTTTGCTTGATTC+GGG | - | chr3_1:91927269-91927288 | None:intergenic | 50.0% | |
| CATTGGTAGATCCATCTGGG+CGG | - | chr3_1:91927301-91927320 | None:intergenic | 50.0% | |
| CATCATCATCGCTTGCGTCA+GGG | - | chr3_1:91927590-91927609 | None:intergenic | 50.0% | |
| TCATCATCATCGCTTGCGTC+AGG | - | chr3_1:91927591-91927610 | None:intergenic | 50.0% | |
| CCTCAGCAGCATTAGCATCT+TGG | - | chr3_1:91927776-91927795 | None:intergenic | 50.0% | |
| CCAAGATGCTAATGCTGCTG+AGG | + | chr3_1:91927773-91927792 | Msa0387830:CDS | 50.0% | |
| TTCTCATGGGAGAACCTCCT+TGG | + | chr3_1:91928390-91928409 | Msa0387830:CDS | 50.0% | |
| AGTGAGATATGCCTCTCGCA+AGG | + | chr3_1:91928888-91928907 | Msa0387830:CDS | 50.0% | |
| GATATGCCTCTCGCAAGGAA+AGG | + | chr3_1:91928893-91928912 | Msa0387830:CDS | 50.0% | |
| !! | AAGGGCCGGTTTGTTAAAGC+CGG | + | chr3_1:91928937-91928956 | Msa0387830:CDS | 50.0% |
| GTCATAATCATAGGCCTCGC+CGG | - | chr3_1:91928959-91928978 | None:intergenic | 50.0% | |
| ATAGACACGCTGCATCGGAG+CGG | - | chr3_1:91926824-91926843 | None:intergenic | 55.0% | |
| GCGTCAGGGCAATTTGTAGC+AGG | - | chr3_1:91927576-91927595 | None:intergenic | 55.0% | |
| AGTTCGTCCCCACCCTTGTT+AGG | - | chr3_1:91928601-91928620 | None:intergenic | 55.0% | |
| ATCAGCCCTTTCCTTGCGAG+AGG | - | chr3_1:91928902-91928921 | None:intergenic | 55.0% | |
| AGGAAAGGGCTGATGTCCGA+AGG | + | chr3_1:91928908-91928927 | Msa0387830:CDS | 55.0% | |
| !! | CCTCGCCGGCTTTAACAAAC+CGG | - | chr3_1:91928945-91928964 | None:intergenic | 55.0% |
| ATAGACACGCTGCATCGGAG+CGG | - | chr3_1:91926824-91926843 | None:intergenic | 55.0% | |
| GCGTCAGGGCAATTTGTAGC+AGG | - | chr3_1:91927576-91927595 | None:intergenic | 55.0% | |
| AGTTCGTCCCCACCCTTGTT+AGG | - | chr3_1:91928601-91928620 | None:intergenic | 55.0% | |
| ATCAGCCCTTTCCTTGCGAG+AGG | - | chr3_1:91928902-91928921 | None:intergenic | 55.0% | |
| AGGAAAGGGCTGATGTCCGA+AGG | + | chr3_1:91928908-91928927 | Msa0387830:CDS | 55.0% | |
| !! | CCTCGCCGGCTTTAACAAAC+CGG | - | chr3_1:91928945-91928964 | None:intergenic | 55.0% |
| GGGGCAAAAGCCATGTCTGC+TGG | + | chr3_1:91927738-91927757 | Msa0387830:CDS | 60.0% | |
| GATGCTGCAGTGCTGCATGC+TGG | - | chr3_1:91928230-91928249 | None:intergenic | 60.0% | |
| ! | TGATGTCCGAAGGCGCGTGA+AGG | + | chr3_1:91928918-91928937 | Msa0387830:CDS | 60.0% |
| ! | GATGTCCGAAGGCGCGTGAA+GGG | + | chr3_1:91928919-91928938 | Msa0387830:CDS | 60.0% |
| !! | CCGGTTTGTTAAAGCCGGCG+AGG | + | chr3_1:91928942-91928961 | Msa0387830:CDS | 60.0% |
| GGGGCAAAAGCCATGTCTGC+TGG | + | chr3_1:91927738-91927757 | Msa0387830:CDS | 60.0% | |
| GATGCTGCAGTGCTGCATGC+TGG | - | chr3_1:91928230-91928249 | None:intergenic | 60.0% | |
| ! | TGATGTCCGAAGGCGCGTGA+AGG | + | chr3_1:91928918-91928937 | Msa0387830:CDS | 60.0% |
| ! | GATGTCCGAAGGCGCGTGAA+GGG | + | chr3_1:91928919-91928938 | Msa0387830:CDS | 60.0% |
| !! | CCGGTTTGTTAAAGCCGGCG+AGG | + | chr3_1:91928942-91928961 | Msa0387830:CDS | 60.0% |
| TCTGGGCGGTCGAGCATACG+CGG | - | chr3_1:91927287-91927306 | None:intergenic | 65.0% | |
| CGTATGCTCGACCGCCCAGA+TGG | + | chr3_1:91927287-91927306 | Msa0387830:CDS | 65.0% | |
| TCTGGGCGGTCGAGCATACG+CGG | - | chr3_1:91927287-91927306 | None:intergenic | 65.0% | |
| CGTATGCTCGACCGCCCAGA+TGG | + | chr3_1:91927287-91927306 | Msa0387830:CDS | 65.0% | |
| ! | TCCGAAGGCGCGTGAAGGGC+CGG | + | chr3_1:91928923-91928942 | Msa0387830:CDS | 70.0% |
| ACCGGCCCTTCACGCGCCTT+CGG | - | chr3_1:91928927-91928946 | None:intergenic | 70.0% | |
| ! | TCCGAAGGCGCGTGAAGGGC+CGG | + | chr3_1:91928923-91928942 | Msa0387830:CDS | 70.0% |
| ACCGGCCCTTCACGCGCCTT+CGG | - | chr3_1:91928927-91928946 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 91926771 | 91929005 | 91926771 | ID=Msa0387830;Name=Msa0387830 |
| chr3_1 | mRNA | 91926771 | 91929005 | 91926771 | ID=Msa0387830-mRNA-1;Parent=Msa0387830;Name=Msa0387830-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.33|0|1|1|1|4|0|411 |
| chr3_1 | exon | 91926771 | 91927334 | 91926771 | ID=Msa0387830-mRNA-1:exon:25747;Parent=Msa0387830-mRNA-1 |
| chr3_1 | exon | 91927564 | 91927794 | 91927564 | ID=Msa0387830-mRNA-1:exon:25748;Parent=Msa0387830-mRNA-1 |
| chr3_1 | exon | 91928194 | 91928504 | 91928194 | ID=Msa0387830-mRNA-1:exon:25749;Parent=Msa0387830-mRNA-1 |
| chr3_1 | exon | 91928876 | 91929005 | 91928876 | ID=Msa0387830-mRNA-1:exon:25750;Parent=Msa0387830-mRNA-1 |
| chr3_1 | CDS | 91926771 | 91927334 | 91926771 | ID=Msa0387830-mRNA-1:cds;Parent=Msa0387830-mRNA-1 |
| chr3_1 | CDS | 91927564 | 91927794 | 91927564 | ID=Msa0387830-mRNA-1:cds;Parent=Msa0387830-mRNA-1 |
| chr3_1 | CDS | 91928194 | 91928504 | 91928194 | ID=Msa0387830-mRNA-1:cds;Parent=Msa0387830-mRNA-1 |
| chr3_1 | CDS | 91928876 | 91929005 | 91928876 | ID=Msa0387830-mRNA-1:cds;Parent=Msa0387830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
