Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077000 | XP_003590724.1 | 96.875 | 512 | 16 | 0 | 1 | 512 | 1 | 512 | 0.0 | 1009 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077000 | sp|F4HSD4|OBGM_ARATH | 55.078 | 512 | 194 | 6 | 9 | 512 | 10 | 493 | 4.35e-166 | 482 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077000 | G7I2N7 | 96.875 | 512 | 16 | 0 | 1 | 512 | 1 | 512 | 0.0 | 1009 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029270 | Msa0077000 | 0.875039 | 4.218494e-68 | -8.615850e-47 |
| Msa0032430 | Msa0077000 | 0.802991 | 4.312873e-49 | -8.615850e-47 |
| Msa0077000 | Msa0127050 | 0.873744 | 1.159696e-67 | -8.615850e-47 |
| Msa0077000 | Msa0169310 | 0.867143 | 1.700436e-65 | -8.615850e-47 |
| Msa0077000 | Msa0172070 | 0.806687 | 7.287372e-50 | -8.615850e-47 |
| Msa0077000 | Msa0327330 | 0.803473 | 3.428073e-49 | -8.615850e-47 |
| Msa0077000 | Msa1043690 | 0.822986 | 1.766048e-53 | -8.615850e-47 |
| Msa0077000 | Msa1374120 | 0.822623 | 2.145180e-53 | -8.615850e-47 |
| Msa0077000 | Msa1382620 | 0.817812 | 2.715464e-52 | -8.615850e-47 |
| Msa0077000 | Msa1399530 | 0.807021 | 6.194797e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077000 | MtrunA17_Chr1g0186011 | 96.875 | 512 | 16 | 0 | 1 | 512 | 1 | 512 | 0.0 | 1009 |
| Msa0077000 | MtrunA17_Chr2g0286181 | 45.109 | 184 | 91 | 3 | 308 | 488 | 302 | 478 | 1.24e-37 | 146 |
| Msa0077000 | MtrunA17_Chr1g0155741 | 39.827 | 231 | 117 | 5 | 250 | 472 | 202 | 418 | 6.93e-32 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077000 | AT1G07615.1 | 55.078 | 512 | 194 | 6 | 9 | 512 | 10 | 493 | 4.42e-167 | 482 |
| Msa0077000 | AT5G18570.1 | 44.022 | 184 | 93 | 3 | 308 | 488 | 362 | 538 | 1.71e-36 | 144 |
Find 145 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTACCCTTAGGCCGAATTT+AGG | 0.211294 | 1_2:+53447397 | Msa0077000:CDS |
| CTTTGCTGTGAGTGCTGTTT+TGG | 0.221466 | 1_2:+53447750 | Msa0077000:CDS |
| GTCTAAGCTTGCCCCTTTGC+AGG | 0.266746 | 1_2:+53445483 | Msa0077000:CDS |
| TGATATTCCTGGACTTATAA+AGG | 0.274187 | 1_2:+53447456 | Msa0077000:CDS |
| ACAAAGATTGTTTGTTGTTT+TGG | 0.279384 | 1_2:-53444874 | None:intergenic |
| TGGAATGCTCTCGTAGAGTT+TGG | 0.302804 | 1_2:+53446403 | Msa0077000:CDS |
| AGACGTGGCTGCTGCTTTAC+CGG | 0.311080 | 1_2:+53447555 | Msa0077000:CDS |
| CTACCCTTAGGCCGAATTTA+GGG | 0.313913 | 1_2:+53447398 | Msa0077000:CDS |
| TTAAACGTAGCACATCTAAA+TGG | 0.315270 | 1_2:-53448030 | None:intergenic |
| GGTAGGTGGTGATGTAATTC+TGG | 0.326577 | 1_2:+53446383 | Msa0077000:CDS |
| TTAGACCCTTGGGATGTTCC+TGG | 0.330001 | 1_2:+53446806 | Msa0077000:CDS |
| CATGTCCAAGTCCACGATTT+TGG | 0.354076 | 1_2:-53447486 | None:intergenic |
| TTGTTTACTTCCCCTGTACT+TGG | 0.357043 | 1_2:+53447939 | Msa0077000:three_prime_UTR |
| GGAATGCTCTCGTAGAGTTT+GGG | 0.359105 | 1_2:+53446404 | Msa0077000:CDS |
| CACATCTAAATGGTTTGATT+AGG | 0.361830 | 1_2:-53448020 | None:intergenic |
| TATATCCTCTGAACCAAGTT+CGG | 0.363030 | 1_2:-53447026 | None:intergenic |
| CATAGAACGCACGAAGGTTC+TGG | 0.366062 | 1_2:+53447522 | Msa0077000:CDS |
| AACATTTGCTTCAGTAGCTT+GGG | 0.369905 | 1_2:-53446930 | None:intergenic |
| TAGTTCAAATTCCCTAAATT+CGG | 0.374007 | 1_2:-53447409 | None:intergenic |
| CTCACGAATGTGTGAAGGAT+TGG | 0.377200 | 1_2:-53444972 | None:intergenic |
| TCACGAATGTGTGAAGGATT+GGG | 0.377372 | 1_2:-53444971 | None:intergenic |
| ATAATTGTGGCTGATATTCC+TGG | 0.394031 | 1_2:+53447445 | Msa0077000:CDS |
| CAACATTTGCTTCAGTAGCT+TGG | 0.398231 | 1_2:-53446931 | None:intergenic |
| GCTGGTAAAAGCACTTTACT+TGG | 0.404940 | 1_2:+53447331 | Msa0077000:CDS |
| GGTGGCAGTGGTGGGGTAGG+TGG | 0.417686 | 1_2:+53446369 | Msa0077000:intron |
| ATATCCTCTGAACCAAGTTC+GGG | 0.422031 | 1_2:-53447025 | None:intergenic |
| AGGAACCAGGGGTGCTGATA+AGG | 0.429683 | 1_2:+53446579 | Msa0077000:CDS |
| GCAACATTACTAAGGATCTC+TGG | 0.430664 | 1_2:-53447058 | None:intergenic |
| AATTCCCTAAATTCGGCCTA+AGG | 0.438327 | 1_2:-53447402 | None:intergenic |
| AATCATGCGATATTTGATCT+AGG | 0.444427 | 1_2:-53447843 | None:intergenic |
| GTTAACTCTTCCTTAAGTAC+AGG | 0.447102 | 1_2:+53447232 | Msa0077000:CDS |
| CCTCGGCAGATTTAGACCCT+TGG | 0.450051 | 1_2:+53446795 | Msa0077000:CDS |
| TCTAATGAAACTCCCGAACT+TGG | 0.450853 | 1_2:+53447013 | Msa0077000:CDS |
| TCAACACGTAACCAATGTTC+AGG | 0.450928 | 1_2:+53447198 | Msa0077000:CDS |
| ACCAGGTAAACCTGTACTTA+AGG | 0.451987 | 1_2:-53447242 | None:intergenic |
| AATCTTATTTGCGACTATCA+AGG | 0.455534 | 1_2:-53447665 | None:intergenic |
| CTCGGCAGATTTAGACCCTT+GGG | 0.455712 | 1_2:+53446796 | Msa0077000:CDS |
| AAGCCTCCGACTACGAAGGC+AGG | 0.456383 | 1_2:+53447169 | Msa0077000:CDS |
| ACAGCACTCACAGCAAAGAT+AGG | 0.456403 | 1_2:-53447745 | None:intergenic |
| GTGAAGGATTGGGGTCGAAT+TGG | 0.460916 | 1_2:-53444961 | None:intergenic |
| GATATTCCTGGACTTATAAA+GGG | 0.465243 | 1_2:+53447457 | Msa0077000:CDS |
| TTAATTCAGCAACATTACTA+AGG | 0.467623 | 1_2:-53447066 | None:intergenic |
| GTTAAGATATTTGCAAAAGC+AGG | 0.467802 | 1_2:+53445638 | Msa0077000:CDS |
| ATCTGGAGGGTTTATCCAAT+CGG | 0.468500 | 1_2:+53447638 | Msa0077000:CDS |
| TTTAATGTAGGTGGCAGTGG+TGG | 0.468806 | 1_2:+53446360 | Msa0077000:intron |
| AGAGTTAAAGAGAAGAGTCC+AGG | 0.470720 | 1_2:+53447717 | Msa0077000:CDS |
| TTAATGTAGGTGGCAGTGGT+GGG | 0.470839 | 1_2:+53446361 | Msa0077000:intron |
| ACTGTACTTCATCTTGTTAG+TGG | 0.471105 | 1_2:+53446740 | Msa0077000:CDS |
| ATGTCGACTGCGGCGAGAGC+TGG | 0.471508 | 1_2:-53445681 | None:intergenic |
| TTCGTAGTCGGAGGCTTCCT+AGG | 0.478808 | 1_2:-53447163 | None:intergenic |
| GTCAATGCAATACATCCTAC+TGG | 0.486779 | 1_2:+53446896 | Msa0077000:CDS |
| TCCTTAAGTACAGGTTTACC+TGG | 0.491918 | 1_2:+53447241 | Msa0077000:CDS |
| TCTAGAGCTTGAGTACCATC+TGG | 0.493988 | 1_2:+53447621 | Msa0077000:CDS |
| ATTTGAGATGAACCTGCAAA+GGG | 0.495087 | 1_2:-53445495 | None:intergenic |
| GCTGCTTTACCGGGAAGAAA+AGG | 0.495442 | 1_2:+53447565 | Msa0077000:CDS |
| GCACACCAAAATCGTGGACT+TGG | 0.496498 | 1_2:+53447481 | Msa0077000:CDS |
| GTAGGTGGCAGTGGTGGGGT+AGG | 0.497438 | 1_2:+53446366 | Msa0077000:intron |
| TTGGAGTTGAGTGTGTTGCT+TGG | 0.504348 | 1_2:+53447958 | Msa0077000:three_prime_UTR |
| TACTTCCAACGTTACAAAGC+AGG | 0.504969 | 1_2:+53446868 | Msa0077000:CDS |
| TTGTTTAATGTAGGTGGCAG+TGG | 0.505030 | 1_2:+53446357 | Msa0077000:intron |
| CCTACCCCTGCCTTCGTAGT+CGG | 0.510088 | 1_2:-53447175 | None:intergenic |
| GTTGCTGAATTAACAGAAGA+AGG | 0.511848 | 1_2:+53447076 | Msa0077000:CDS |
| CACGAAGGTTCTGGCTTATG+TGG | 0.512150 | 1_2:+53447531 | Msa0077000:CDS |
| GATTGATGAGGAAGGTGCTG+AGG | 0.515849 | 1_2:+53447684 | Msa0077000:CDS |
| CTAAGACCAGCTTTAAGCTC+TGG | 0.516203 | 1_2:-53447784 | None:intergenic |
| ACACACTCAACTCCAAGTAC+AGG | 0.520460 | 1_2:-53447951 | None:intergenic |
| GATATTTGATCTAGGTAAAG+TGG | 0.520840 | 1_2:-53447835 | None:intergenic |
| TGTGCACCCTTTATAAGTCC+AGG | 0.526218 | 1_2:-53447463 | None:intergenic |
| ATTGTTGCTCGTGGAGGAGA+AGG | 0.529077 | 1_2:+53447109 | Msa0077000:CDS |
| CGTGGAGGAGAAGGTGGTCT+CGG | 0.529675 | 1_2:+53447118 | Msa0077000:CDS |
| GATTTGAGATGAACCTGCAA+AGG | 0.535063 | 1_2:-53445496 | None:intergenic |
| GCATGGTAGATAGCAGGTAA+TGG | 0.541441 | 1_2:+53446529 | Msa0077000:intron |
| CAACAGATTATTGTTGCTCG+TGG | 0.544802 | 1_2:+53447100 | Msa0077000:CDS |
| AGAAAATGCACCATCAGCTA+TGG | 0.545941 | 1_2:-53445714 | None:intergenic |
| AATAACCTTATCAGCACCCC+TGG | 0.546348 | 1_2:-53446584 | None:intergenic |
| CACACTCAACTCCAAGTACA+GGG | 0.547752 | 1_2:-53447950 | None:intergenic |
| GGTCTTAGAGTGCTTGTCAA+TGG | 0.548551 | 1_2:+53447799 | Msa0077000:CDS |
| TAATGTAGGTGGCAGTGGTG+GGG | 0.549379 | 1_2:+53446362 | Msa0077000:intron |
| GACGTGGCTGCTGCTTTACC+GGG | 0.552200 | 1_2:+53447556 | Msa0077000:CDS |
| CGTAGAGTTTGGGATTTCAG+TGG | 0.552303 | 1_2:+53446414 | Msa0077000:CDS |
| TAGGTTGTTCGTGTACCGAT+TGG | 0.553618 | 1_2:+53446716 | Msa0077000:intron |
| ATTCCCTAAATTCGGCCTAA+GGG | 0.555377 | 1_2:-53447401 | None:intergenic |
| AGGATTGGGGTCGAATTGGT+TGG | 0.557475 | 1_2:-53444957 | None:intergenic |
| AGTAGAACCATCGCGAGGGT+CGG | 0.558484 | 1_2:-53446849 | None:intergenic |
| AACGGTGCATGGTAGATAGC+AGG | 0.561820 | 1_2:+53446523 | Msa0077000:intron |
| AAGGCATAGTGACCAACAGC+AGG | 0.566091 | 1_2:-53447373 | None:intergenic |
| GGGATACCAGAGCTTAAAGC+TGG | 0.567066 | 1_2:+53447778 | Msa0077000:CDS |
| AGATGAAGTACAGTGCCAAT+CGG | 0.571977 | 1_2:-53446731 | None:intergenic |
| CCGCAGTCGACATGATAGAA+AGG | 0.572937 | 1_2:+53445691 | Msa0077000:CDS |
| CACGAATGTGTGAAGGATTG+GGG | 0.572990 | 1_2:-53444970 | None:intergenic |
| TCGAGAGCTAAGCCTGCTGT+TGG | 0.575285 | 1_2:+53447361 | Msa0077000:CDS |
| GAGTTAAAGAGAAGAGTCCA+GGG | 0.575569 | 1_2:+53447718 | Msa0077000:CDS |
| CTCGAACTTGTGTATCGAGA+TGG | 0.580297 | 1_2:+53445416 | Msa0077000:CDS |
| GACTATCAAGGATGGCCGAT+TGG | 0.580706 | 1_2:-53447653 | None:intergenic |
| AGCCTCCGACTACGAAGGCA+GGG | 0.582496 | 1_2:+53447170 | Msa0077000:CDS |
| AAGTCTTTCAGTTGTTCCCA+CGG | 0.582651 | 1_2:-53447595 | None:intergenic |
| CAGATTATTGTTGCTCGTGG+AGG | 0.584571 | 1_2:+53447103 | Msa0077000:CDS |
| AAAGCAGGAGATGGTGGTAA+TGG | 0.587463 | 1_2:+53445653 | Msa0077000:CDS |
| GAACCTTCGTGCGTTCTATG+TGG | 0.589370 | 1_2:-53447519 | None:intergenic |
| GATAGAAAGGCCATAGCTGA+TGG | 0.590848 | 1_2:+53445704 | Msa0077000:CDS |
| TAAGTATGAGCAAGATAGAG+TGG | 0.592098 | 1_2:+53447892 | Msa0077000:three_prime_UTR |
| ACTGTCAGTGTCCTGAACAT+TGG | 0.594372 | 1_2:-53447209 | None:intergenic |
| ATAGCAGGTAATGGAGGACA+TGG | 0.597504 | 1_2:+53446538 | Msa0077000:CDS |
| GATCATTCCGACCCTCGCGA+TGG | 0.602902 | 1_2:+53446842 | Msa0077000:CDS |
| ATTCGGCCTAAGGGTAGTGA+AGG | 0.603401 | 1_2:-53447392 | None:intergenic |
| AGAGCTTGAGTACCATCTGG+AGG | 0.604807 | 1_2:+53447624 | Msa0077000:CDS |
| TTATTTGCGACTATCAAGGA+TGG | 0.608281 | 1_2:-53447661 | None:intergenic |
| ATAAGAACAGTTTCAGAACC+AGG | 0.610177 | 1_2:-53447259 | None:intergenic |
| ACCCCTGCCTTCGTAGTCGG+AGG | 0.611843 | 1_2:-53447172 | None:intergenic |
| ATATTTGATCTAGGTAAAGT+GGG | 0.612494 | 1_2:-53447834 | None:intergenic |
| TTTGTGGGAATGCCTAATGC+TGG | 0.612770 | 1_2:+53447313 | Msa0077000:CDS |
| GAAAACTCACGAATGTGTGA+AGG | 0.614531 | 1_2:-53444977 | None:intergenic |
| GCAAATAAGATTGATGAGGA+AGG | 0.615672 | 1_2:+53447676 | Msa0077000:CDS |
| GTTGCTCGTGGAGGAGAAGG+TGG | 0.615939 | 1_2:+53447112 | Msa0077000:CDS |
| AACTCCCGAACTTGGTTCAG+AGG | 0.616094 | 1_2:+53447021 | Msa0077000:CDS |
| CCGACTACGAAGGCAGGGGT+AGG | 0.616125 | 1_2:+53447175 | Msa0077000:CDS |
| AGTACACCAGGAACATCCCA+AGG | 0.617161 | 1_2:-53446812 | None:intergenic |
| ATATTTGCAAAAGCAGGAGA+TGG | 0.618455 | 1_2:+53445644 | Msa0077000:CDS |
| TTTGCAAAAGCAGGAGATGG+TGG | 0.621662 | 1_2:+53445647 | Msa0077000:CDS |
| GAGCTTGAGTACCATCTGGA+GGG | 0.622668 | 1_2:+53447625 | Msa0077000:CDS |
| ACTATGCCTTCACTACCCTT+AGG | 0.622794 | 1_2:+53447386 | Msa0077000:CDS |
| TGGTAGATAGCAGGTAATGG+AGG | 0.626963 | 1_2:+53446532 | Msa0077000:intron |
| TGATGATATGTCGATAATTG+TGG | 0.627592 | 1_2:+53447432 | Msa0077000:CDS |
| GTGGGAACAACTGAAAGACT+TGG | 0.628785 | 1_2:+53447597 | Msa0077000:CDS |
| ATCTTGCTCATACTTACAAG+AGG | 0.629556 | 1_2:-53447885 | None:intergenic |
| TGGGATGAAGAGCAGCCAGT+AGG | 0.630566 | 1_2:-53446911 | None:intergenic |
| GCCTCCGACTACGAAGGCAG+GGG | 0.633957 | 1_2:+53447171 | Msa0077000:CDS |
| TGATCATCTACAAGTACACC+AGG | 0.639058 | 1_2:-53446824 | None:intergenic |
| CCAAGGGTCTAAATCTGCCG+AGG | 0.648440 | 1_2:-53446795 | None:intergenic |
| TAGGAAGCCTCCGACTACGA+AGG | 0.650216 | 1_2:+53447165 | Msa0077000:CDS |
| CAGCAAAGATAGGAACACCC+TGG | 0.655094 | 1_2:-53447735 | None:intergenic |
| AGTCGCAAATAAGATTGATG+AGG | 0.657149 | 1_2:+53447672 | Msa0077000:CDS |
| AAGGGTGCACACCAAAATCG+TGG | 0.658610 | 1_2:+53447475 | Msa0077000:CDS |
| AAGAAAAGGAATTTCACCGT+GGG | 0.658650 | 1_2:+53447579 | Msa0077000:CDS |
| GATTGGATAAACCCTCCAGA+TGG | 0.671658 | 1_2:-53447636 | None:intergenic |
| TGGAAGTAGAACCATCGCGA+GGG | 0.675258 | 1_2:-53446853 | None:intergenic |
| TTGGAAGTAGAACCATCGCG+AGG | 0.677202 | 1_2:-53446854 | None:intergenic |
| TCTGGCTTATGTGGTAGACG+TGG | 0.716654 | 1_2:+53447540 | Msa0077000:CDS |
| CCTTTCTATCATGTCGACTG+CGG | 0.723582 | 1_2:-53445691 | None:intergenic |
| TTTGAGATGAACCTGCAAAG+GGG | 0.725714 | 1_2:-53445494 | None:intergenic |
| GTACACCAGGAACATCCCAA+GGG | 0.738023 | 1_2:-53446811 | None:intergenic |
| ACACTCAACTCCAAGTACAG+GGG | 0.739351 | 1_2:-53447949 | None:intergenic |
| GCAAGCTTAGACTTGCTGTG+AGG | 0.740111 | 1_2:-53445472 | None:intergenic |
| GAAGAAAAGGAATTTCACCG+TGG | 0.751479 | 1_2:+53447578 | Msa0077000:CDS |
| GCGCCACATAGAACGCACGA+AGG | 0.760320 | 1_2:+53447516 | Msa0077000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTATTTTTTAAGAATT+TGG | + | chr1_2:53444923-53444942 | Msa0077000:five_prime_UTR | 10.0% |
| !!! | ATATTTTGAATAGTTAATTT+TGG | - | chr1_2:53445131-53445150 | None:intergenic | 10.0% |
| !!! | AAAAAAGAAACTTTATTTAT+AGG | - | chr1_2:53445226-53445245 | None:intergenic | 10.0% |
| !!! | ATTTTTTGACATAATTTTTT+TGG | - | chr1_2:53446476-53446495 | None:intergenic | 10.0% |
| !!! | TATTTTTATTTTCTTCTATT+TGG | + | chr1_2:53446645-53446664 | Msa0077000:intron | 10.0% |
| !!! | ATTTTTTAAGAATTTGGTTT+CGG | + | chr1_2:53444929-53444948 | Msa0077000:five_prime_UTR | 15.0% |
| !! | AACAAACAAAATATAAGAAA+TGG | - | chr1_2:53445041-53445060 | None:intergenic | 15.0% |
| !! | TATTTGTTTAAGAGAAAAAA+TGG | - | chr1_2:53445104-53445123 | None:intergenic | 15.0% |
| !!! | AAATGTCATTTTTTTTTTCA+TGG | - | chr1_2:53445539-53445558 | None:intergenic | 15.0% |
| !!! | TTTTGAATTATTGAAAATGT+GGG | - | chr1_2:53445985-53446004 | None:intergenic | 15.0% |
| !!! | ATTTTGAATTGTTAGTAATT+TGG | + | chr1_2:53446196-53446215 | Msa0077000:intron | 15.0% |
| !! | ATAATTAAATCCGTATATAT+AGG | - | chr1_2:53446241-53446260 | None:intergenic | 15.0% |
| !!! | AAATACGAAACAATTTTTAA+AGG | - | chr1_2:53446630-53446649 | None:intergenic | 15.0% |
| !! | TATTTATAGGATTTCTCATT+GGG | - | chr1_2:53445213-53445232 | None:intergenic | 20.0% |
| !! | TTATTTATAGGATTTCTCAT+TGG | - | chr1_2:53445214-53445233 | None:intergenic | 20.0% |
| !! | TTAATATTTACTCATTTGTC+CGG | - | chr1_2:53445850-53445869 | None:intergenic | 20.0% |
| !! | AATTGAGTAAATAACCAATT+TGG | + | chr1_2:53445925-53445944 | Msa0077000:intron | 20.0% |
| !! | TATAATTTCAAAGACCAAAT+TGG | - | chr1_2:53445942-53445961 | None:intergenic | 20.0% |
| !!! | AATTTGGTCTTTGAAATTAT+AGG | + | chr1_2:53445941-53445960 | Msa0077000:intron | 20.0% |
| !!! | GTTTTGAATTATTGAAAATG+TGG | - | chr1_2:53445986-53446005 | None:intergenic | 20.0% |
| !! | TATATTGAAAAATGTCAGTA+AGG | + | chr1_2:53446012-53446031 | Msa0077000:intron | 20.0% |
| !!! | TAATGATAATGACATTAAGT+TGG | + | chr1_2:53446066-53446085 | Msa0077000:intron | 20.0% |
| !!! | TTTGATAATAATCTATGCAT+AGG | + | chr1_2:53446137-53446156 | Msa0077000:intron | 20.0% |
| !!! | TTGATAATAATCTATGCATA+GGG | + | chr1_2:53446138-53446157 | Msa0077000:intron | 20.0% |
| !!! | TATTAACATTTTGCAATTTC+AGG | + | chr1_2:53446169-53446188 | Msa0077000:intron | 20.0% |
| !! | TTGATGTTAAGAAATTTAGA+TGG | + | chr1_2:53446307-53446326 | Msa0077000:intron | 20.0% |
| !!! | TGAACTTTTTTTACTATAGA+AGG | - | chr1_2:53446773-53446792 | None:intergenic | 20.0% |
| !!! | ACAAAGATTGTTTGTTGTTT+TGG | - | chr1_2:53444877-53444896 | None:intergenic | 25.0% |
| !! | TATGCATAGCCAAATTTTAA+GGG | - | chr1_2:53445170-53445189 | None:intergenic | 25.0% |
| !! | TTATGCATAGCCAAATTTTA+AGG | - | chr1_2:53445171-53445190 | None:intergenic | 25.0% |
| ! | ATTTATAGGATTTCTCATTG+GGG | - | chr1_2:53445212-53445231 | None:intergenic | 25.0% |
| !!! | TGTCATTTTTTTTTTCATGG+TGG | - | chr1_2:53445536-53445555 | None:intergenic | 25.0% |
| ! | TAATATTTACTCATTTGTCC+GGG | - | chr1_2:53445849-53445868 | None:intergenic | 25.0% |
| ! | CTATTGTAAACATTAATGAG+GGG | - | chr1_2:53446043-53446062 | None:intergenic | 25.0% |
| ! | GCTATTGTAAACATTAATGA+GGG | - | chr1_2:53446044-53446063 | None:intergenic | 25.0% |
| ! | AGCTATTGTAAACATTAATG+AGG | - | chr1_2:53446045-53446064 | None:intergenic | 25.0% |
| !!! | TGACATTAAGTTGGAAATAT+CGG | + | chr1_2:53446075-53446094 | Msa0077000:intron | 25.0% |
| !! | GGAATGAATTTAAAGTTAAG+TGG | + | chr1_2:53446097-53446116 | Msa0077000:intron | 25.0% |
| ! | AAAGTTAAGTGGATAGTATA+AGG | + | chr1_2:53446108-53446127 | Msa0077000:intron | 25.0% |
| ! | AAGTTAAGTGGATAGTATAA+GGG | + | chr1_2:53446109-53446128 | Msa0077000:intron | 25.0% |
| ! | TTGAATTGTTAGTAATTTGG+AGG | + | chr1_2:53446199-53446218 | Msa0077000:intron | 25.0% |
| ! | TCGATACAAACCTATATATA+CGG | + | chr1_2:53446228-53446247 | Msa0077000:intron | 25.0% |
| ! | CTAAATTTCTTAACATCAAC+TGG | - | chr1_2:53446306-53446325 | None:intergenic | 25.0% |
| ! | GGATCATCAAAAAATAAGAT+AGG | + | chr1_2:53446559-53446578 | Msa0077000:CDS | 25.0% |
| ! | AAAAAATAAGATAGGAACCA+GGG | + | chr1_2:53446567-53446586 | Msa0077000:CDS | 25.0% |
| ! | AGTAAAAAAAGTTCAATCCT+CGG | + | chr1_2:53446778-53446797 | Msa0077000:CDS | 25.0% |
| ! | TTAATTCAGCAACATTACTA+AGG | - | chr1_2:53447069-53447088 | None:intergenic | 25.0% |
| ! | TAGTTCAAATTCCCTAAATT+CGG | - | chr1_2:53447412-53447431 | None:intergenic | 25.0% |
| ! | ATATTTGATCTAGGTAAAGT+GGG | - | chr1_2:53447837-53447856 | None:intergenic | 25.0% |
| !! | TTTTAAGAATTTGGTTTCGG+CGG | + | chr1_2:53444932-53444951 | Msa0077000:five_prime_UTR | 30.0% |
| TAAAAAAATGCTAGCAGAGA+AGG | - | chr1_2:53445014-53445033 | None:intergenic | 30.0% | |
| AACGCAAAACCCTTAAAATT+TGG | + | chr1_2:53445158-53445177 | Msa0077000:intron | 30.0% | |
| ! | CTTTGTTCAGTTCATTTTGA+AGG | + | chr1_2:53445289-53445308 | Msa0077000:intron | 30.0% |
| ATACACAGAGACAAAAATGT+TGG | + | chr1_2:53445354-53445373 | Msa0077000:exon | 30.0% | |
| GTTAAGATATTTGCAAAAGC+AGG | + | chr1_2:53445638-53445657 | Msa0077000:CDS | 30.0% | |
| ATCTTCTAGATTTGACAATG+TGG | + | chr1_2:53445760-53445779 | Msa0077000:intron | 30.0% | |
| TCTTCTAGATTTGACAATGT+GGG | + | chr1_2:53445761-53445780 | Msa0077000:intron | 30.0% | |
| !! | GACATTAAGTTGGAAATATC+GGG | + | chr1_2:53446076-53446095 | Msa0077000:intron | 30.0% |
| ACAATGTGCTTGTTTAATGT+AGG | + | chr1_2:53446348-53446367 | Msa0077000:intron | 30.0% | |
| CAAAAAATAAGATAGGAACC+AGG | + | chr1_2:53446566-53446585 | Msa0077000:CDS | 30.0% | |
| AAAAATAAGATAGGAACCAG+GGG | + | chr1_2:53446568-53446587 | Msa0077000:CDS | 30.0% | |
| ! | AAAGCAAGTTAGTTTGGATA+AGG | - | chr1_2:53446694-53446713 | None:intergenic | 30.0% |
| CCTATTAAAGCAAGTTAGTT+TGG | - | chr1_2:53446700-53446719 | None:intergenic | 30.0% | |
| !! | CCAAACTAACTTGCTTTAAT+AGG | + | chr1_2:53446697-53446716 | Msa0077000:intron | 30.0% |
| TGTCTATTCAAAAAGATCCT+AGG | + | chr1_2:53447146-53447165 | Msa0077000:CDS | 30.0% | |
| !!! | ATTGCTGATGTTAGTTTTGT+GGG | + | chr1_2:53447298-53447317 | Msa0077000:CDS | 30.0% |
| TGATGATATGTCGATAATTG+TGG | + | chr1_2:53447432-53447451 | Msa0077000:CDS | 30.0% | |
| TGATATTCCTGGACTTATAA+AGG | + | chr1_2:53447456-53447475 | Msa0077000:CDS | 30.0% | |
| GATATTCCTGGACTTATAAA+GGG | + | chr1_2:53447457-53447476 | Msa0077000:CDS | 30.0% | |
| ! | AATCTTATTTGCGACTATCA+AGG | - | chr1_2:53447668-53447687 | None:intergenic | 30.0% |
| GATATTTGATCTAGGTAAAG+TGG | - | chr1_2:53447838-53447857 | None:intergenic | 30.0% | |
| AATCATGCGATATTTGATCT+AGG | - | chr1_2:53447846-53447865 | None:intergenic | 30.0% | |
| !! | AGGTTATGACCATTGTTTTT+GGG | - | chr1_2:53448003-53448022 | None:intergenic | 30.0% |
| ! | TAGGTTATGACCATTGTTTT+TGG | - | chr1_2:53448004-53448023 | None:intergenic | 30.0% |
| CACATCTAAATGGTTTGATT+AGG | - | chr1_2:53448023-53448042 | None:intergenic | 30.0% | |
| TTAAACGTAGCACATCTAAA+TGG | - | chr1_2:53448033-53448052 | None:intergenic | 30.0% | |
| ! | ATTTGAGATGAACCTGCAAA+GGG | - | chr1_2:53445498-53445517 | None:intergenic | 35.0% |
| !! | GCATTGAGGTTTTTGTTTGT+AGG | + | chr1_2:53445595-53445614 | Msa0077000:intron | 35.0% |
| ATATTTGCAAAAGCAGGAGA+TGG | + | chr1_2:53445644-53445663 | Msa0077000:CDS | 35.0% | |
| CTTCTAGATTTGACAATGTG+GGG | + | chr1_2:53445762-53445781 | Msa0077000:intron | 35.0% | |
| TTCTAGATTTGACAATGTGG+GGG | + | chr1_2:53445763-53445782 | Msa0077000:intron | 35.0% | |
| TGAGCTAAGGGATAAAAAGT+TGG | + | chr1_2:53445807-53445826 | Msa0077000:intron | 35.0% | |
| GATAAAAAGTTGGAGGTCTT+GGG | + | chr1_2:53445817-53445836 | Msa0077000:intron | 35.0% | |
| TCTTAACATCAACTGGATGA+TGG | - | chr1_2:53446299-53446318 | None:intergenic | 35.0% | |
| ATGTGCTTGTTTAATGTAGG+TGG | + | chr1_2:53446351-53446370 | Msa0077000:intron | 35.0% | |
| TTTCATGTCAGTGACACTAA+CGG | + | chr1_2:53446505-53446524 | Msa0077000:intron | 35.0% | |
| ACTGTACTTCATCTTGTTAG+TGG | + | chr1_2:53446740-53446759 | Msa0077000:CDS | 35.0% | |
| ! | TTTTTCCTGCTTTGTAACGT+TGG | - | chr1_2:53446876-53446895 | None:intergenic | 35.0% |
| AACATTTGCTTCAGTAGCTT+GGG | - | chr1_2:53446933-53446952 | None:intergenic | 35.0% | |
| TATATCCTCTGAACCAAGTT+CGG | - | chr1_2:53447029-53447048 | None:intergenic | 35.0% | |
| GTTGCTGAATTAACAGAAGA+AGG | + | chr1_2:53447076-53447095 | Msa0077000:CDS | 35.0% | |
| GTTAACTCTTCCTTAAGTAC+AGG | + | chr1_2:53447232-53447251 | Msa0077000:CDS | 35.0% | |
| ATAAGAACAGTTTCAGAACC+AGG | - | chr1_2:53447262-53447281 | None:intergenic | 35.0% | |
| !!! | CATTGCTGATGTTAGTTTTG+TGG | + | chr1_2:53447297-53447316 | Msa0077000:CDS | 35.0% |
| !! | AAAGTGCTTTTACCAGCATT+AGG | - | chr1_2:53447328-53447347 | None:intergenic | 35.0% |
| ATAATTGTGGCTGATATTCC+TGG | + | chr1_2:53447445-53447464 | Msa0077000:CDS | 35.0% | |
| AAGAAAAGGAATTTCACCGT+GGG | + | chr1_2:53447579-53447598 | Msa0077000:CDS | 35.0% | |
| TTATTTGCGACTATCAAGGA+TGG | - | chr1_2:53447664-53447683 | None:intergenic | 35.0% | |
| AGTCGCAAATAAGATTGATG+AGG | + | chr1_2:53447672-53447691 | Msa0077000:CDS | 35.0% | |
| GCAAATAAGATTGATGAGGA+AGG | + | chr1_2:53447676-53447695 | Msa0077000:CDS | 35.0% | |
| ATCTTGCTCATACTTACAAG+AGG | - | chr1_2:53447888-53447907 | None:intergenic | 35.0% | |
| TAAGTATGAGCAAGATAGAG+TGG | + | chr1_2:53447892-53447911 | Msa0077000:three_prime_UTR | 35.0% | |
| !!! | TTGTTTTTGGGAGTTCAGTT+TGG | - | chr1_2:53447991-53448010 | None:intergenic | 35.0% |
| AACTGAACTCCCAAAAACAA+TGG | + | chr1_2:53447991-53448010 | Msa0077000:three_prime_UTR | 35.0% | |
| ! | TCAACATTTTACCGATACCC+TGG | + | chr1_2:53444849-53444868 | Msa0077000:five_prime_UTR | 40.0% |
| !!! | TGTTTGTTGTTTTGGTGCCA+GGG | - | chr1_2:53444869-53444888 | None:intergenic | 40.0% |
| !!! | TTGTTTGTTGTTTTGGTGCC+AGG | - | chr1_2:53444870-53444889 | None:intergenic | 40.0% |
| TCACGAATGTGTGAAGGATT+GGG | - | chr1_2:53444974-53444993 | None:intergenic | 40.0% | |
| GAAAACTCACGAATGTGTGA+AGG | - | chr1_2:53444980-53444999 | None:intergenic | 40.0% | |
| ! | TTTGAGATGAACCTGCAAAG+GGG | - | chr1_2:53445497-53445516 | None:intergenic | 40.0% |
| ! | GATTTGAGATGAACCTGCAA+AGG | - | chr1_2:53445499-53445518 | None:intergenic | 40.0% |
| CATGGTGGTAGAAAATGAGT+TGG | - | chr1_2:53445521-53445540 | None:intergenic | 40.0% | |
| TGTAAGTACTCACTGCATTG+AGG | + | chr1_2:53445581-53445600 | Msa0077000:intron | 40.0% | |
| AGAAAATGCACCATCAGCTA+TGG | - | chr1_2:53445717-53445736 | None:intergenic | 40.0% | |
| !! | CTCTAACTGGTTTGAGCTAA+GGG | + | chr1_2:53445795-53445814 | Msa0077000:intron | 40.0% |
| GCTAAGGGATAAAAAGTTGG+AGG | + | chr1_2:53445810-53445829 | Msa0077000:intron | 40.0% | |
| GGATAAAAAGTTGGAGGTCT+TGG | + | chr1_2:53445816-53445835 | Msa0077000:intron | 40.0% | |
| TTGTTTAATGTAGGTGGCAG+TGG | + | chr1_2:53446357-53446376 | Msa0077000:intron | 40.0% | |
| AGATGAAGTACAGTGCCAAT+CGG | - | chr1_2:53446734-53446753 | None:intergenic | 40.0% | |
| TGATCATCTACAAGTACACC+AGG | - | chr1_2:53446827-53446846 | None:intergenic | 40.0% | |
| TACTTCCAACGTTACAAAGC+AGG | + | chr1_2:53446868-53446887 | Msa0077000:CDS | 40.0% | |
| GTCAATGCAATACATCCTAC+TGG | + | chr1_2:53446896-53446915 | Msa0077000:CDS | 40.0% | |
| CAACATTTGCTTCAGTAGCT+TGG | - | chr1_2:53446934-53446953 | None:intergenic | 40.0% | |
| TCTAATGAAACTCCCGAACT+TGG | + | chr1_2:53447013-53447032 | Msa0077000:CDS | 40.0% | |
| ATATCCTCTGAACCAAGTTC+GGG | - | chr1_2:53447028-53447047 | None:intergenic | 40.0% | |
| GCAACATTACTAAGGATCTC+TGG | - | chr1_2:53447061-53447080 | None:intergenic | 40.0% | |
| CAACAGATTATTGTTGCTCG+TGG | + | chr1_2:53447100-53447119 | Msa0077000:CDS | 40.0% | |
| TCAACACGTAACCAATGTTC+AGG | + | chr1_2:53447198-53447217 | Msa0077000:CDS | 40.0% | |
| TCCTTAAGTACAGGTTTACC+TGG | + | chr1_2:53447241-53447260 | Msa0077000:CDS | 40.0% | |
| ACCAGGTAAACCTGTACTTA+AGG | - | chr1_2:53447245-53447264 | None:intergenic | 40.0% | |
| !! | GCTGGTAAAAGCACTTTACT+TGG | + | chr1_2:53447331-53447350 | Msa0077000:CDS | 40.0% |
| ATTCCCTAAATTCGGCCTAA+GGG | - | chr1_2:53447404-53447423 | None:intergenic | 40.0% | |
| AATTCCCTAAATTCGGCCTA+AGG | - | chr1_2:53447405-53447424 | None:intergenic | 40.0% | |
| ! | GGTGAAATTCCTTTTCTTCC+CGG | - | chr1_2:53447577-53447596 | None:intergenic | 40.0% |
| GAAGAAAAGGAATTTCACCG+TGG | + | chr1_2:53447578-53447597 | Msa0077000:CDS | 40.0% | |
| AAGTCTTTCAGTTGTTCCCA+CGG | - | chr1_2:53447598-53447617 | None:intergenic | 40.0% | |
| ATCTGGAGGGTTTATCCAAT+CGG | + | chr1_2:53447638-53447657 | Msa0077000:CDS | 40.0% | |
| AGAGTTAAAGAGAAGAGTCC+AGG | + | chr1_2:53447717-53447736 | Msa0077000:CDS | 40.0% | |
| GAGTTAAAGAGAAGAGTCCA+GGG | + | chr1_2:53447718-53447737 | Msa0077000:CDS | 40.0% | |
| TTGTTTACTTCCCCTGTACT+TGG | + | chr1_2:53447939-53447958 | Msa0077000:three_prime_UTR | 40.0% | |
| !!! | TTGTTTTGGTGCCAGGGTAT+CGG | - | chr1_2:53444863-53444882 | None:intergenic | 45.0% |
| CACGAATGTGTGAAGGATTG+GGG | - | chr1_2:53444973-53444992 | None:intergenic | 45.0% | |
| CTCACGAATGTGTGAAGGAT+TGG | - | chr1_2:53444975-53444994 | None:intergenic | 45.0% | |
| ! | ATTGGGGAATTTTGTCGAGC+AGG | - | chr1_2:53445196-53445215 | None:intergenic | 45.0% |
| CTCGAACTTGTGTATCGAGA+TGG | + | chr1_2:53445416-53445435 | Msa0077000:CDS | 45.0% | |
| TTTGCAAAAGCAGGAGATGG+TGG | + | chr1_2:53445647-53445666 | Msa0077000:CDS | 45.0% | |
| ! | AAAGCAGGAGATGGTGGTAA+TGG | + | chr1_2:53445653-53445672 | Msa0077000:CDS | 45.0% |
| ! | CCTTTCTATCATGTCGACTG+CGG | - | chr1_2:53445694-53445713 | None:intergenic | 45.0% |
| GATAGAAAGGCCATAGCTGA+TGG | + | chr1_2:53445704-53445723 | Msa0077000:CDS | 45.0% | |
| GATTTGACAATGTGGGGGAT+CGG | + | chr1_2:53445768-53445787 | Msa0077000:intron | 45.0% | |
| ATTTGACAATGTGGGGGATC+GGG | + | chr1_2:53445769-53445788 | Msa0077000:intron | 45.0% | |
| !! | GCTCTAACTGGTTTGAGCTA+AGG | + | chr1_2:53445794-53445813 | Msa0077000:intron | 45.0% |
| TTTAATGTAGGTGGCAGTGG+TGG | + | chr1_2:53446360-53446379 | Msa0077000:intron | 45.0% | |
| TTAATGTAGGTGGCAGTGGT+GGG | + | chr1_2:53446361-53446380 | Msa0077000:intron | 45.0% | |
| ! | GGTAGGTGGTGATGTAATTC+TGG | + | chr1_2:53446383-53446402 | Msa0077000:CDS | 45.0% |
| TGGAATGCTCTCGTAGAGTT+TGG | + | chr1_2:53446403-53446422 | Msa0077000:CDS | 45.0% | |
| GGAATGCTCTCGTAGAGTTT+GGG | + | chr1_2:53446404-53446423 | Msa0077000:CDS | 45.0% | |
| ! | CGTAGAGTTTGGGATTTCAG+TGG | + | chr1_2:53446414-53446433 | Msa0077000:CDS | 45.0% |
| GCATGGTAGATAGCAGGTAA+TGG | + | chr1_2:53446529-53446548 | Msa0077000:intron | 45.0% | |
| ! | TGGTAGATAGCAGGTAATGG+AGG | + | chr1_2:53446532-53446551 | Msa0077000:intron | 45.0% |
| !! | ATAGCAGGTAATGGAGGACA+TGG | + | chr1_2:53446538-53446557 | Msa0077000:CDS | 45.0% |
| AATAACCTTATCAGCACCCC+TGG | - | chr1_2:53446587-53446606 | None:intergenic | 45.0% | |
| ! | TAGGTTGTTCGTGTACCGAT+TGG | + | chr1_2:53446716-53446735 | Msa0077000:intron | 45.0% |
| CAGATTATTGTTGCTCGTGG+AGG | + | chr1_2:53447103-53447122 | Msa0077000:CDS | 45.0% | |
| ACTGTCAGTGTCCTGAACAT+TGG | - | chr1_2:53447212-53447231 | None:intergenic | 45.0% | |
| TTTGTGGGAATGCCTAATGC+TGG | + | chr1_2:53447313-53447332 | Msa0077000:CDS | 45.0% | |
| ACTATGCCTTCACTACCCTT+AGG | + | chr1_2:53447386-53447405 | Msa0077000:CDS | 45.0% | |
| ACTACCCTTAGGCCGAATTT+AGG | + | chr1_2:53447397-53447416 | Msa0077000:CDS | 45.0% | |
| CTACCCTTAGGCCGAATTTA+GGG | + | chr1_2:53447398-53447417 | Msa0077000:CDS | 45.0% | |
| TGTGCACCCTTTATAAGTCC+AGG | - | chr1_2:53447466-53447485 | None:intergenic | 45.0% | |
| ! | CATGTCCAAGTCCACGATTT+TGG | - | chr1_2:53447489-53447508 | None:intergenic | 45.0% |
| GTGGGAACAACTGAAAGACT+TGG | + | chr1_2:53447597-53447616 | Msa0077000:CDS | 45.0% | |
| ! | TCTAGAGCTTGAGTACCATC+TGG | + | chr1_2:53447621-53447640 | Msa0077000:CDS | 45.0% |
| GATTGGATAAACCCTCCAGA+TGG | - | chr1_2:53447639-53447658 | None:intergenic | 45.0% | |
| ACAGCACTCACAGCAAAGAT+AGG | - | chr1_2:53447748-53447767 | None:intergenic | 45.0% | |
| !!! | CTTTGCTGTGAGTGCTGTTT+TGG | + | chr1_2:53447750-53447769 | Msa0077000:CDS | 45.0% |
| !!! | TGAGTGCTGTTTTGGAGGAA+GGG | + | chr1_2:53447758-53447777 | Msa0077000:CDS | 45.0% |
| !! | CTAAGACCAGCTTTAAGCTC+TGG | - | chr1_2:53447787-53447806 | None:intergenic | 45.0% |
| ! | GGTCTTAGAGTGCTTGTCAA+TGG | + | chr1_2:53447799-53447818 | Msa0077000:CDS | 45.0% |
| ACACTCAACTCCAAGTACAG+GGG | - | chr1_2:53447952-53447971 | None:intergenic | 45.0% | |
| CACACTCAACTCCAAGTACA+GGG | - | chr1_2:53447953-53447972 | None:intergenic | 45.0% | |
| ACACACTCAACTCCAAGTAC+AGG | - | chr1_2:53447954-53447973 | None:intergenic | 45.0% | |
| ! | TTGGAGTTGAGTGTGTTGCT+TGG | + | chr1_2:53447958-53447977 | Msa0077000:three_prime_UTR | 45.0% |
| AGGATTGGGGTCGAATTGGT+TGG | - | chr1_2:53444960-53444979 | None:intergenic | 50.0% | |
| GTGAAGGATTGGGGTCGAAT+TGG | - | chr1_2:53444964-53444983 | None:intergenic | 50.0% | |
| !! | GCAAGCTTAGACTTGCTGTG+AGG | - | chr1_2:53445475-53445494 | None:intergenic | 50.0% |
| CCGCAGTCGACATGATAGAA+AGG | + | chr1_2:53445691-53445710 | Msa0077000:CDS | 50.0% | |
| TAATGTAGGTGGCAGTGGTG+GGG | + | chr1_2:53446362-53446381 | Msa0077000:intron | 50.0% | |
| TCAGTGACACTAACGGTGCA+TGG | + | chr1_2:53446512-53446531 | Msa0077000:intron | 50.0% | |
| AACGGTGCATGGTAGATAGC+AGG | + | chr1_2:53446523-53446542 | Msa0077000:intron | 50.0% | |
| CTCGGCAGATTTAGACCCTT+GGG | + | chr1_2:53446796-53446815 | Msa0077000:CDS | 50.0% | |
| TTAGACCCTTGGGATGTTCC+TGG | + | chr1_2:53446806-53446825 | Msa0077000:CDS | 50.0% | |
| GTACACCAGGAACATCCCAA+GGG | - | chr1_2:53446814-53446833 | None:intergenic | 50.0% | |
| AGTACACCAGGAACATCCCA+AGG | - | chr1_2:53446815-53446834 | None:intergenic | 50.0% | |
| TGGAAGTAGAACCATCGCGA+GGG | - | chr1_2:53446856-53446875 | None:intergenic | 50.0% | |
| TTGGAAGTAGAACCATCGCG+AGG | - | chr1_2:53446857-53446876 | None:intergenic | 50.0% | |
| AACTCCCGAACTTGGTTCAG+AGG | + | chr1_2:53447021-53447040 | Msa0077000:CDS | 50.0% | |
| ATTGTTGCTCGTGGAGGAGA+AGG | + | chr1_2:53447109-53447128 | Msa0077000:CDS | 50.0% | |
| AAGGCATAGTGACCAACAGC+AGG | - | chr1_2:53447376-53447395 | None:intergenic | 50.0% | |
| ATTCGGCCTAAGGGTAGTGA+AGG | - | chr1_2:53447395-53447414 | None:intergenic | 50.0% | |
| ! | AAGGGTGCACACCAAAATCG+TGG | + | chr1_2:53447475-53447494 | Msa0077000:CDS | 50.0% |
| GCACACCAAAATCGTGGACT+TGG | + | chr1_2:53447481-53447500 | Msa0077000:CDS | 50.0% | |
| GAACCTTCGTGCGTTCTATG+TGG | - | chr1_2:53447522-53447541 | None:intergenic | 50.0% | |
| CATAGAACGCACGAAGGTTC+TGG | + | chr1_2:53447522-53447541 | Msa0077000:CDS | 50.0% | |
| !! | CACGAAGGTTCTGGCTTATG+TGG | + | chr1_2:53447531-53447550 | Msa0077000:CDS | 50.0% |
| ! | TCTGGCTTATGTGGTAGACG+TGG | + | chr1_2:53447540-53447559 | Msa0077000:CDS | 50.0% |
| ! | GCTGCTTTACCGGGAAGAAA+AGG | + | chr1_2:53447565-53447584 | Msa0077000:CDS | 50.0% |
| AGAGCTTGAGTACCATCTGG+AGG | + | chr1_2:53447624-53447643 | Msa0077000:CDS | 50.0% | |
| GAGCTTGAGTACCATCTGGA+GGG | + | chr1_2:53447625-53447644 | Msa0077000:CDS | 50.0% | |
| GACTATCAAGGATGGCCGAT+TGG | - | chr1_2:53447656-53447675 | None:intergenic | 50.0% | |
| !! | GATTGATGAGGAAGGTGCTG+AGG | + | chr1_2:53447684-53447703 | Msa0077000:CDS | 50.0% |
| CAGCAAAGATAGGAACACCC+TGG | - | chr1_2:53447738-53447757 | None:intergenic | 50.0% | |
| !!! | TGCTGTGAGTGCTGTTTTGG+AGG | + | chr1_2:53447753-53447772 | Msa0077000:CDS | 50.0% |
| !!! | GTGAGTGCTGTTTTGGAGGA+AGG | + | chr1_2:53447757-53447776 | Msa0077000:CDS | 50.0% |
| GGGATACCAGAGCTTAAAGC+TGG | + | chr1_2:53447778-53447797 | Msa0077000:CDS | 50.0% | |
| GTCTAAGCTTGCCCCTTTGC+AGG | + | chr1_2:53445483-53445502 | Msa0077000:CDS | 55.0% | |
| GGAGGTCTTGGGTTCAAACC+CGG | + | chr1_2:53445828-53445847 | Msa0077000:intron | 55.0% | |
| !! | AGGAACCAGGGGTGCTGATA+AGG | + | chr1_2:53446579-53446598 | Msa0077000:CDS | 55.0% |
| CCAAGGGTCTAAATCTGCCG+AGG | - | chr1_2:53446798-53446817 | None:intergenic | 55.0% | |
| CCTCGGCAGATTTAGACCCT+TGG | + | chr1_2:53446795-53446814 | Msa0077000:CDS | 55.0% | |
| AGTAGAACCATCGCGAGGGT+CGG | - | chr1_2:53446852-53446871 | None:intergenic | 55.0% | |
| TGGGATGAAGAGCAGCCAGT+AGG | - | chr1_2:53446914-53446933 | None:intergenic | 55.0% | |
| TTCGTAGTCGGAGGCTTCCT+AGG | - | chr1_2:53447166-53447185 | None:intergenic | 55.0% | |
| TAGGAAGCCTCCGACTACGA+AGG | + | chr1_2:53447165-53447184 | Msa0077000:CDS | 55.0% | |
| TCGAGAGCTAAGCCTGCTGT+TGG | + | chr1_2:53447361-53447380 | Msa0077000:CDS | 55.0% | |
| !! | AGACGTGGCTGCTGCTTTAC+CGG | + | chr1_2:53447555-53447574 | Msa0077000:CDS | 55.0% |
| !! | GGGGATCGGGTAGCTCTAAC+TGG | + | chr1_2:53445782-53445801 | Msa0077000:intron | 60.0% |
| GATCATTCCGACCCTCGCGA+TGG | + | chr1_2:53446842-53446861 | Msa0077000:CDS | 60.0% | |
| GTTGCTCGTGGAGGAGAAGG+TGG | + | chr1_2:53447112-53447131 | Msa0077000:CDS | 60.0% | |
| CGTGGAGGAGAAGGTGGTCT+CGG | + | chr1_2:53447118-53447137 | Msa0077000:CDS | 60.0% | |
| AAGCCTCCGACTACGAAGGC+AGG | + | chr1_2:53447169-53447188 | Msa0077000:CDS | 60.0% | |
| AGCCTCCGACTACGAAGGCA+GGG | + | chr1_2:53447170-53447189 | Msa0077000:CDS | 60.0% | |
| CCTACCCCTGCCTTCGTAGT+CGG | - | chr1_2:53447178-53447197 | None:intergenic | 60.0% | |
| GCGCCACATAGAACGCACGA+AGG | + | chr1_2:53447516-53447535 | Msa0077000:CDS | 60.0% | |
| !! | GACGTGGCTGCTGCTTTACC+GGG | + | chr1_2:53447556-53447575 | Msa0077000:CDS | 60.0% |
| ! | ATGTCGACTGCGGCGAGAGC+TGG | - | chr1_2:53445684-53445703 | None:intergenic | 65.0% |
| ! | GTAGGTGGCAGTGGTGGGGT+AGG | + | chr1_2:53446366-53446385 | Msa0077000:intron | 65.0% |
| GCCTCCGACTACGAAGGCAG+GGG | + | chr1_2:53447171-53447190 | Msa0077000:CDS | 65.0% | |
| ACCCCTGCCTTCGTAGTCGG+AGG | - | chr1_2:53447175-53447194 | None:intergenic | 65.0% | |
| CCGACTACGAAGGCAGGGGT+AGG | + | chr1_2:53447175-53447194 | Msa0077000:CDS | 65.0% | |
| ! | GGTGGCAGTGGTGGGGTAGG+TGG | + | chr1_2:53446369-53446388 | Msa0077000:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 53444825 | 53448070 | 53444825 | ID=Msa0077000;Name=Msa0077000 |
| chr1_2 | mRNA | 53444825 | 53448070 | 53444825 | ID=Msa0077000-mRNA-1;Parent=Msa0077000;Name=Msa0077000-mRNA-1;_AED=0.03;_eAED=0.03;_QI=236|1|1|1|0.8|0.66|6|203|512 |
| chr1_2 | exon | 53444825 | 53444989 | 53444825 | ID=Msa0077000-mRNA-1:exon:16524;Parent=Msa0077000-mRNA-1 |
| chr1_2 | exon | 53445299 | 53445504 | 53445299 | ID=Msa0077000-mRNA-1:exon:16525;Parent=Msa0077000-mRNA-1 |
| chr1_2 | exon | 53445617 | 53445725 | 53445617 | ID=Msa0077000-mRNA-1:exon:16526;Parent=Msa0077000-mRNA-1 |
| chr1_2 | exon | 53446370 | 53446452 | 53446370 | ID=Msa0077000-mRNA-1:exon:16527;Parent=Msa0077000-mRNA-1 |
| chr1_2 | exon | 53446538 | 53446600 | 53446538 | ID=Msa0077000-mRNA-1:exon:16528;Parent=Msa0077000-mRNA-1 |
| chr1_2 | exon | 53446719 | 53448070 | 53446719 | ID=Msa0077000-mRNA-1:exon:16529;Parent=Msa0077000-mRNA-1 |
| chr1_2 | five_prime_UTR | 53444825 | 53444989 | 53444825 | ID=Msa0077000-mRNA-1:five_prime_utr;Parent=Msa0077000-mRNA-1 |
| chr1_2 | five_prime_UTR | 53445299 | 53445369 | 53445299 | ID=Msa0077000-mRNA-1:five_prime_utr;Parent=Msa0077000-mRNA-1 |
| chr1_2 | CDS | 53445370 | 53445504 | 53445370 | ID=Msa0077000-mRNA-1:cds;Parent=Msa0077000-mRNA-1 |
| chr1_2 | CDS | 53445617 | 53445725 | 53445617 | ID=Msa0077000-mRNA-1:cds;Parent=Msa0077000-mRNA-1 |
| chr1_2 | CDS | 53446370 | 53446452 | 53446370 | ID=Msa0077000-mRNA-1:cds;Parent=Msa0077000-mRNA-1 |
| chr1_2 | CDS | 53446538 | 53446600 | 53446538 | ID=Msa0077000-mRNA-1:cds;Parent=Msa0077000-mRNA-1 |
| chr1_2 | CDS | 53446719 | 53447867 | 53446719 | ID=Msa0077000-mRNA-1:cds;Parent=Msa0077000-mRNA-1 |
| chr1_2 | three_prime_UTR | 53447868 | 53448070 | 53447868 | ID=Msa0077000-mRNA-1:three_prime_utr;Parent=Msa0077000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
