AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127050 MtrunA17_Chr1g0186011 96.680 512 17 0 1 512 1 512 0.0 1008
Msa0127050 MtrunA17_Chr2g0286181 45.109 184 91 3 308 488 302 478 1.40e-37 146
Msa0127050 MtrunA17_Chr1g0155741 39.827 231 117 5 250 472 202 418 7.21e-32 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127050 AT1G07615.1 55.078 512 194 6 9 512 10 493 4.82e-167 482
Msa0127050 AT5G18570.1 44.022 184 93 3 308 488 362 538 1.65e-36 144

Find 145 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACCCTTAGGCCGAATTT+AGG 0.211294 1_3:-56267214 Msa0127050:CDS
CTTTGCTGTGAGTGCTGTTT+TGG 0.221466 1_3:-56266861 Msa0127050:CDS
GTCTAAGCTTGCCCCTTTGC+AGG 0.266746 1_3:-56269126 Msa0127050:intron
TGATATTCCTGGACTTATAA+AGG 0.274187 1_3:-56267155 Msa0127050:CDS
ACAAAGATTGTTTGTTGTTT+TGG 0.279384 1_3:+56269730 None:intergenic
TGGAATGCTCTCGTAGAGTT+TGG 0.302804 1_3:-56268209 Msa0127050:CDS
AGACGTGGCTGCTGCTTTAC+CGG 0.311080 1_3:-56267056 Msa0127050:CDS
CTACCCTTAGGCCGAATTTA+GGG 0.313913 1_3:-56267213 Msa0127050:CDS
TTAAACGTAGCACATCTAAA+TGG 0.315270 1_3:+56266581 None:intergenic
GGTAGGTGGTGATGTAATTC+TGG 0.326577 1_3:-56268229 Msa0127050:CDS
TTAGACCCTTGGGATGTTCC+TGG 0.330001 1_3:-56267805 Msa0127050:CDS
CATGTCCAAGTCCACGATTT+TGG 0.354076 1_3:+56267125 None:intergenic
TTGTTTACTTCCCCTGTACT+TGG 0.357043 1_3:-56266672 Msa0127050:three_prime_UTR
GGAATGCTCTCGTAGAGTTT+GGG 0.359105 1_3:-56268208 Msa0127050:CDS
CACATCTAAATGGTTTGATT+AGG 0.361830 1_3:+56266591 None:intergenic
TATATCCTCTGAACCAAGTT+CGG 0.363030 1_3:+56267585 None:intergenic
CATAGAACGCACGAAGGTTC+TGG 0.366062 1_3:-56267089 Msa0127050:CDS
AACATTTGCTTCAGTAGCTT+GGG 0.369905 1_3:+56267681 None:intergenic
TAGTTCAAATTCCCTAAATT+CGG 0.374007 1_3:+56267202 None:intergenic
CTCACGAATGTGTGAAGGAT+TGG 0.377200 1_3:+56269637 None:intergenic
TCACGAATGTGTGAAGGATT+GGG 0.377372 1_3:+56269638 None:intergenic
ATAATTGTGGCTGATATTCC+TGG 0.394031 1_3:-56267166 Msa0127050:CDS
CAACATTTGCTTCAGTAGCT+TGG 0.398231 1_3:+56267680 None:intergenic
GCTGGTAAAAGCACTTTACT+TGG 0.404940 1_3:-56267280 Msa0127050:CDS
GGTGGCAGTGGTGGGGTAGG+TGG 0.417686 1_3:-56268243 Msa0127050:CDS
ATATCCTCTGAACCAAGTTC+GGG 0.422031 1_3:+56267586 None:intergenic
AGGAACCAGGGGTGCTGATA+AGG 0.429683 1_3:-56268032 Msa0127050:intron
GCAACATTACTAAGGATCTC+TGG 0.430664 1_3:+56267553 None:intergenic
AATTCCCTAAATTCGGCCTA+AGG 0.438327 1_3:+56267209 None:intergenic
AATCATGCGATATTTGATCT+AGG 0.444427 1_3:+56266768 None:intergenic
GTTAACTCTTCCTTAAGTAC+AGG 0.447102 1_3:-56267379 Msa0127050:CDS
CCTCGGCAGATTTAGACCCT+TGG 0.450051 1_3:-56267816 Msa0127050:CDS
TCTAATGAAACTCCCGAACT+TGG 0.450853 1_3:-56267598 Msa0127050:CDS
TCAACACGTAACCAATGTTC+AGG 0.450928 1_3:-56267413 Msa0127050:CDS
ACCAGGTAAACCTGTACTTA+AGG 0.451987 1_3:+56267369 None:intergenic
AATCTTATTTGCGACTATCA+AGG 0.455534 1_3:+56266946 None:intergenic
CTCGGCAGATTTAGACCCTT+GGG 0.455712 1_3:-56267815 Msa0127050:CDS
AAGCCTCCGACTACGAAGGC+AGG 0.456383 1_3:-56267442 Msa0127050:CDS
ACAGCACTCACAGCAAAGAT+AGG 0.456403 1_3:+56266866 None:intergenic
GTGAAGGATTGGGGTCGAAT+TGG 0.460916 1_3:+56269648 None:intergenic
GATATTCCTGGACTTATAAA+GGG 0.465243 1_3:-56267154 Msa0127050:CDS
TTAATTCAGCAACATTACTA+AGG 0.467623 1_3:+56267545 None:intergenic
GTTAAGATATTTGCAAAAGC+AGG 0.467802 1_3:-56268974 Msa0127050:CDS
ATCTGGAGGGTTTATCCAAT+CGG 0.468500 1_3:-56266973 Msa0127050:CDS
TTTAATGTAGGTGGCAGTGG+TGG 0.468806 1_3:-56268252 Msa0127050:intron
AGAGTTAAAGAGAAGAGTCC+AGG 0.470720 1_3:-56266894 Msa0127050:CDS
TTAATGTAGGTGGCAGTGGT+GGG 0.470839 1_3:-56268251 Msa0127050:intron
ACTGTACTTCATCTTGTTAG+TGG 0.471105 1_3:-56267871 Msa0127050:CDS
ATGTCGACTGCGGCGAGAGC+TGG 0.471508 1_3:+56268931 None:intergenic
TTCGTAGTCGGAGGCTTCCT+AGG 0.478808 1_3:+56267448 None:intergenic
GTCAATGCAATACATCCTAC+TGG 0.486779 1_3:-56267715 Msa0127050:CDS
TCCTTAAGTACAGGTTTACC+TGG 0.491918 1_3:-56267370 Msa0127050:CDS
TCTAGAGCTTGAGTACCATC+TGG 0.493988 1_3:-56266990 Msa0127050:CDS
GCTGCTTTACCGGGAAGAAA+AGG 0.495442 1_3:-56267046 Msa0127050:CDS
GCACACCAAAATCGTGGACT+TGG 0.496498 1_3:-56267130 Msa0127050:CDS
GTAGGTGGCAGTGGTGGGGT+AGG 0.497438 1_3:-56268246 Msa0127050:intron
TTGGAGTTGAGTGTGTTGCT+TGG 0.504348 1_3:-56266653 Msa0127050:three_prime_UTR
TACTTCCAACGTTACAAAGC+AGG 0.504969 1_3:-56267743 Msa0127050:CDS
TTGTTTAATGTAGGTGGCAG+TGG 0.505030 1_3:-56268255 Msa0127050:intron
CCTACCCCTGCCTTCGTAGT+CGG 0.510088 1_3:+56267436 None:intergenic
GTTGCTGAATTAACAGAAGA+AGG 0.511848 1_3:-56267535 Msa0127050:CDS
CACGAAGGTTCTGGCTTATG+TGG 0.512150 1_3:-56267080 Msa0127050:CDS
GATTGATGAGGAAGGTGCTG+AGG 0.515849 1_3:-56266927 Msa0127050:CDS
CTAAGACCAGCTTTAAGCTC+TGG 0.516203 1_3:+56266827 None:intergenic
ACACACTCAACTCCAAGTAC+AGG 0.520460 1_3:+56266660 None:intergenic
GATATTTGATCTAGGTAAAG+TGG 0.520840 1_3:+56266776 None:intergenic
TGTGCACCCTTTATAAGTCC+AGG 0.526218 1_3:+56267148 None:intergenic
ATTGTTGCTCGTGGAGGAGA+AGG 0.529077 1_3:-56267502 Msa0127050:CDS
CGTGGAGGAGAAGGTGGTCT+CGG 0.529675 1_3:-56267493 Msa0127050:CDS
GCATGGTAGATAGCAGGTAA+TGG 0.541441 1_3:-56268082 Msa0127050:intron
CAACAGATTATTGTTGCTCG+TGG 0.544802 1_3:-56267511 Msa0127050:CDS
ATTGGAGATGAACCTGCAAA+GGG 0.544998 1_3:+56269114 None:intergenic
AGAAAATGCACCATCAGCTA+TGG 0.545941 1_3:+56268898 None:intergenic
AATAACCTTATCAGCACCCC+TGG 0.546348 1_3:+56268027 None:intergenic
CTCGAACTTGTGTATCGAGA+TGG 0.547124 1_3:-56269193 Msa0127050:CDS
CACACTCAACTCCAAGTACA+GGG 0.547752 1_3:+56266661 None:intergenic
GGTCTTAGAGTGCTTGTCAA+TGG 0.548551 1_3:-56266812 Msa0127050:CDS
TAATGTAGGTGGCAGTGGTG+GGG 0.549379 1_3:-56268250 Msa0127050:intron
GACGTGGCTGCTGCTTTACC+GGG 0.552200 1_3:-56267055 Msa0127050:CDS
CGTAGAGTTTGGGATTTCAG+TGG 0.552303 1_3:-56268198 Msa0127050:CDS
TAGGTTGTTCGTGTACCGAT+TGG 0.553618 1_3:-56267895 Msa0127050:CDS
ATTCCCTAAATTCGGCCTAA+GGG 0.555377 1_3:+56267210 None:intergenic
AGGATTGGGGTCGAATTGGT+TGG 0.557475 1_3:+56269652 None:intergenic
GATTGGAGATGAACCTGCAA+AGG 0.558258 1_3:+56269113 None:intergenic
AGTAGAACCATCGCGAGGGT+CGG 0.558484 1_3:+56267762 None:intergenic
AACGGTGCATGGTAGATAGC+AGG 0.561820 1_3:-56268088 Msa0127050:intron
AAGGCATAGTGACCAACAGC+AGG 0.566091 1_3:+56267238 None:intergenic
GGGATACCAGAGCTTAAAGC+TGG 0.567066 1_3:-56266833 Msa0127050:CDS
AGATGAAGTACAGTGCCAAT+CGG 0.571977 1_3:+56267880 None:intergenic
CCGCAGTCGACATGATAGAA+AGG 0.572937 1_3:-56268921 Msa0127050:CDS
CACGAATGTGTGAAGGATTG+GGG 0.572990 1_3:+56269639 None:intergenic
TCGAGAGCTAAGCCTGCTGT+TGG 0.575285 1_3:-56267250 Msa0127050:CDS
GAGTTAAAGAGAAGAGTCCA+GGG 0.575569 1_3:-56266893 Msa0127050:CDS
GACTATCAAGGATGGCCGAT+TGG 0.580706 1_3:+56266958 None:intergenic
AGCCTCCGACTACGAAGGCA+GGG 0.582496 1_3:-56267441 Msa0127050:CDS
AAGTCTTTCAGTTGTTCCCA+CGG 0.582651 1_3:+56267016 None:intergenic
CAGATTATTGTTGCTCGTGG+AGG 0.584571 1_3:-56267508 Msa0127050:CDS
GAACCTTCGTGCGTTCTATG+TGG 0.589370 1_3:+56267092 None:intergenic
GATAGAAAGGCCATAGCTGA+TGG 0.590848 1_3:-56268908 Msa0127050:intron
TAAGTATGAGCAAGATAGAG+TGG 0.592098 1_3:-56266719 Msa0127050:three_prime_UTR
ACTGTCAGTGTCCTGAACAT+TGG 0.594372 1_3:+56267402 None:intergenic
ATAGCAGGTAATGGAGGACA+TGG 0.597504 1_3:-56268073 Msa0127050:CDS
GATCATTCCGACCCTCGCGA+TGG 0.602902 1_3:-56267769 Msa0127050:CDS
ATTCGGCCTAAGGGTAGTGA+AGG 0.603401 1_3:+56267219 None:intergenic
AGAGCTTGAGTACCATCTGG+AGG 0.604807 1_3:-56266987 Msa0127050:CDS
TTATTTGCGACTATCAAGGA+TGG 0.608281 1_3:+56266950 None:intergenic
ATAAGAACAGTTTCAGAACC+AGG 0.610177 1_3:+56267352 None:intergenic
AAAGCAGGAGATGGTGGTAA+CGG 0.611800 1_3:-56268959 Msa0127050:CDS
ACCCCTGCCTTCGTAGTCGG+AGG 0.611843 1_3:+56267439 None:intergenic
ATATTTGATCTAGGTAAAGT+GGG 0.612494 1_3:+56266777 None:intergenic
TTTGTGGGAATGCCTAATGC+TGG 0.612770 1_3:-56267298 Msa0127050:CDS
GAAAACTCACGAATGTGTGA+AGG 0.614531 1_3:+56269632 None:intergenic
GCAAATAAGATTGATGAGGA+AGG 0.615672 1_3:-56266935 Msa0127050:CDS
GTTGCTCGTGGAGGAGAAGG+TGG 0.615939 1_3:-56267499 Msa0127050:CDS
AACTCCCGAACTTGGTTCAG+AGG 0.616094 1_3:-56267590 Msa0127050:CDS
CCGACTACGAAGGCAGGGGT+AGG 0.616125 1_3:-56267436 Msa0127050:CDS
AGTACACCAGGAACATCCCA+AGG 0.617161 1_3:+56267799 None:intergenic
ATATTTGCAAAAGCAGGAGA+TGG 0.618455 1_3:-56268968 Msa0127050:CDS
TTTGCAAAAGCAGGAGATGG+TGG 0.621662 1_3:-56268965 Msa0127050:CDS
GAGCTTGAGTACCATCTGGA+GGG 0.622668 1_3:-56266986 Msa0127050:CDS
ACTATGCCTTCACTACCCTT+AGG 0.622794 1_3:-56267225 Msa0127050:CDS
TGGTAGATAGCAGGTAATGG+AGG 0.626963 1_3:-56268079 Msa0127050:intron
TGATGATATGTCGATAATTG+TGG 0.627592 1_3:-56267179 Msa0127050:CDS
GTGGGAACAACTGAAAGACT+TGG 0.628785 1_3:-56267014 Msa0127050:CDS
ATCTTGCTCATACTTACAAG+AGG 0.629556 1_3:+56266726 None:intergenic
TGGGATGAAGAGCAGCCAGT+AGG 0.630566 1_3:+56267700 None:intergenic
GCCTCCGACTACGAAGGCAG+GGG 0.633957 1_3:-56267440 Msa0127050:CDS
TGATCATCTACAAGTACACC+AGG 0.639058 1_3:+56267787 None:intergenic
CCAAGGGTCTAAATCTGCCG+AGG 0.648440 1_3:+56267816 None:intergenic
TAGGAAGCCTCCGACTACGA+AGG 0.650216 1_3:-56267446 Msa0127050:CDS
CAGCAAAGATAGGAACACCC+TGG 0.655094 1_3:+56266876 None:intergenic
AGTCGCAAATAAGATTGATG+AGG 0.657149 1_3:-56266939 Msa0127050:CDS
AAGGGTGCACACCAAAATCG+TGG 0.658610 1_3:-56267136 Msa0127050:CDS
AAGAAAAGGAATTTCACCGT+GGG 0.658650 1_3:-56267032 Msa0127050:CDS
GATTGGATAAACCCTCCAGA+TGG 0.671658 1_3:+56266975 None:intergenic
TGGAAGTAGAACCATCGCGA+GGG 0.675258 1_3:+56267758 None:intergenic
TTGGAAGTAGAACCATCGCG+AGG 0.677202 1_3:+56267757 None:intergenic
TCTGGCTTATGTGGTAGACG+TGG 0.716654 1_3:-56267071 Msa0127050:CDS
CCTTTCTATCATGTCGACTG+CGG 0.723582 1_3:+56268921 None:intergenic
TTGGAGATGAACCTGCAAAG+GGG 0.725714 1_3:+56269115 None:intergenic
GTACACCAGGAACATCCCAA+GGG 0.738023 1_3:+56267800 None:intergenic
ACACTCAACTCCAAGTACAG+GGG 0.739351 1_3:+56266662 None:intergenic
GCAAGCTTAGACTTGCTGTG+AGG 0.740111 1_3:+56269137 None:intergenic
GAAGAAAAGGAATTTCACCG+TGG 0.751479 1_3:-56267033 Msa0127050:CDS
GCGCCACATAGAACGCACGA+AGG 0.760320 1_3:-56267095 Msa0127050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTATTTTTTAAGAATT+TGG - chr1_3:56266656-56266675 Msa0127050:three_prime_UTR 10.0%
!!! ATATTTTGAATAGTTAATTT+TGG + chr1_3:56266864-56266883 None:intergenic 10.0%
!!! AAAAAAGAAACTTTATTTAT+AGG + chr1_3:56266959-56266978 None:intergenic 10.0%
!!! TTTTTTGACATAATTTTTTT+TGG + chr1_3:56268206-56268225 None:intergenic 10.0%
!!! TATTTTTATTTTCTTCTATT+TGG - chr1_3:56268376-56268395 Msa0127050:intron 10.0%
!!! ATTTTTTAAGAATTTGGTTT+CGG - chr1_3:56266662-56266681 Msa0127050:three_prime_UTR 15.0%
!! AACAAACAAAATATAAGAAA+TGG + chr1_3:56266774-56266793 None:intergenic 15.0%
!! TATTTGTTTAAGAGAAAAAA+TGG + chr1_3:56266837-56266856 None:intergenic 15.0%
!!! TTTTGAATTATTGAAAATGT+GGG + chr1_3:56267715-56267734 None:intergenic 15.0%
!!! ATTTTGAATTGTTAGTAATT+TGG - chr1_3:56267926-56267945 Msa0127050:intron 15.0%
!! ATAATTAAATCCGTATATAT+AGG + chr1_3:56267971-56267990 None:intergenic 15.0%
!!! AAATACGAAACAATTTTTAA+AGG + chr1_3:56268361-56268380 None:intergenic 15.0%
!! AATGGAAAATAAAAAAATGC+TGG + chr1_3:56266756-56266775 None:intergenic 20.0%
!! TATTTATAGGATTTCTCATT+GGG + chr1_3:56266946-56266965 None:intergenic 20.0%
!! TTATTTATAGGATTTCTCAT+TGG + chr1_3:56266947-56266966 None:intergenic 20.0%
!! TTAATATTTACTCATTTGTC+CGG + chr1_3:56267580-56267599 None:intergenic 20.0%
!! AATTGAGTAAATAACCAATT+TGG - chr1_3:56267655-56267674 Msa0127050:CDS 20.0%
!! TATAATTTCAAAGACCAAAT+TGG + chr1_3:56267672-56267691 None:intergenic 20.0%
!!! AATTTGGTCTTTGAAATTAT+AGG - chr1_3:56267671-56267690 Msa0127050:CDS 20.0%
!!! GTTTTGAATTATTGAAAATG+TGG + chr1_3:56267716-56267735 None:intergenic 20.0%
!! TATATTGAAAAATGTCAGTA+AGG - chr1_3:56267742-56267761 Msa0127050:CDS 20.0%
!!! TAATGATAATGACATTAAGT+TGG - chr1_3:56267796-56267815 Msa0127050:CDS 20.0%
!!! TTTGATAATAATCTATGCAT+AGG - chr1_3:56267867-56267886 Msa0127050:CDS 20.0%
!!! TTGATAATAATCTATGCATA+GGG - chr1_3:56267868-56267887 Msa0127050:CDS 20.0%
!!! TATTAACATTTTGCAATTTC+AGG - chr1_3:56267899-56267918 Msa0127050:intron 20.0%
!! TTGATGTTAAGAAATTTAGA+TGG - chr1_3:56268037-56268056 Msa0127050:CDS 20.0%
!!! TGAACTTTTTTTACTATAGA+AGG + chr1_3:56268504-56268523 None:intergenic 20.0%
!!! ACAAAGATTGTTTGTTGTTT+TGG + chr1_3:56266615-56266634 None:intergenic 25.0%
!! TATGCATAGCCAAATTTTAA+GGG + chr1_3:56266903-56266922 None:intergenic 25.0%
!! TTATGCATAGCCAAATTTTA+AGG + chr1_3:56266904-56266923 None:intergenic 25.0%
! ATTTATAGGATTTCTCATTG+GGG + chr1_3:56266945-56266964 None:intergenic 25.0%
!!! CAAAATGTCGTTTTTTTTCA+TGG + chr1_3:56267272-56267291 None:intergenic 25.0%
! TAATATTTACTCATTTGTCC+GGG + chr1_3:56267579-56267598 None:intergenic 25.0%
! CTATTGTAAACATTAATGAG+GGG + chr1_3:56267773-56267792 None:intergenic 25.0%
! GCTATTGTAAACATTAATGA+GGG + chr1_3:56267774-56267793 None:intergenic 25.0%
! AGCTATTGTAAACATTAATG+AGG + chr1_3:56267775-56267794 None:intergenic 25.0%
!!! TGACATTAAGTTGGAAATAT+CGG - chr1_3:56267805-56267824 Msa0127050:CDS 25.0%
!! GGAATGAATTTAAAGTTAAG+TGG - chr1_3:56267827-56267846 Msa0127050:CDS 25.0%
! AAAGTTAAGTGGATAGTATA+AGG - chr1_3:56267838-56267857 Msa0127050:CDS 25.0%
! AAGTTAAGTGGATAGTATAA+GGG - chr1_3:56267839-56267858 Msa0127050:CDS 25.0%
! TTGAATTGTTAGTAATTTGG+AGG - chr1_3:56267929-56267948 Msa0127050:intron 25.0%
! TCGATACAAACCTATATATA+CGG - chr1_3:56267958-56267977 Msa0127050:intron 25.0%
! CTAAATTTCTTAACATCAAC+TGG + chr1_3:56268036-56268055 None:intergenic 25.0%
! GGATCATCAAAAAATAAGAT+AGG - chr1_3:56268290-56268309 Msa0127050:intron 25.0%
! AAAAAATAAGATAGGAACCA+GGG - chr1_3:56268298-56268317 Msa0127050:intron 25.0%
! AGTAAAAAAAGTTCAATCCT+CGG - chr1_3:56268509-56268528 Msa0127050:intron 25.0%
! TTAATTCAGCAACATTACTA+AGG + chr1_3:56268800-56268819 None:intergenic 25.0%
! TAGTTCAAATTCCCTAAATT+CGG + chr1_3:56269143-56269162 None:intergenic 25.0%
! ATATTTGATCTAGGTAAAGT+GGG + chr1_3:56269568-56269587 None:intergenic 25.0%
!! TTTTAAGAATTTGGTTTCGG+CGG - chr1_3:56266665-56266684 Msa0127050:three_prime_UTR 30.0%
AACGCAAAACCCTTAAAATT+TGG - chr1_3:56266891-56266910 Msa0127050:CDS 30.0%
! CTTTGTTCAGTTCATTTTGA+AGG - chr1_3:56267022-56267041 Msa0127050:CDS 30.0%
ACAAACACAGACAAAAATGT+TGG - chr1_3:56267087-56267106 Msa0127050:CDS 30.0%
!!! AATGTCGTTTTTTTTCATGG+TGG + chr1_3:56267269-56267288 None:intergenic 30.0%
GTTAAGATATTTGCAAAAGC+AGG - chr1_3:56267368-56267387 Msa0127050:CDS 30.0%
ATCTTCTAGATTTGACAATG+CGG - chr1_3:56267490-56267509 Msa0127050:CDS 30.0%
!! GACATTAAGTTGGAAATATC+GGG - chr1_3:56267806-56267825 Msa0127050:CDS 30.0%
ACAATGTGCTTGTTTAATGT+AGG - chr1_3:56268078-56268097 Msa0127050:intron 30.0%
CAAAAAATAAGATAGGAACC+AGG - chr1_3:56268297-56268316 Msa0127050:intron 30.0%
AAAAATAAGATAGGAACCAG+GGG - chr1_3:56268299-56268318 Msa0127050:intron 30.0%
! AAAGCAAGTTAGTTTGGATA+AGG + chr1_3:56268425-56268444 None:intergenic 30.0%
CCTATTAAAGCAAGTTAGTT+TGG + chr1_3:56268431-56268450 None:intergenic 30.0%
!! CCAAACTAACTTGCTTTAAT+AGG - chr1_3:56268428-56268447 Msa0127050:intron 30.0%
TGTCTATTCAAAAAGATCCT+AGG - chr1_3:56268877-56268896 Msa0127050:intron 30.0%
!!! ATTGCTGATGTTAGTTTTGT+GGG - chr1_3:56269029-56269048 Msa0127050:intron 30.0%
TGATGATATGTCGATAATTG+TGG - chr1_3:56269163-56269182 Msa0127050:CDS 30.0%
TGATATTCCTGGACTTATAA+AGG - chr1_3:56269187-56269206 Msa0127050:CDS 30.0%
GATATTCCTGGACTTATAAA+GGG - chr1_3:56269188-56269207 Msa0127050:CDS 30.0%
! AATCTTATTTGCGACTATCA+AGG + chr1_3:56269399-56269418 None:intergenic 30.0%
GATATTTGATCTAGGTAAAG+TGG + chr1_3:56269569-56269588 None:intergenic 30.0%
AATCATGCGATATTTGATCT+AGG + chr1_3:56269577-56269596 None:intergenic 30.0%
!! AGGTTATGACCATTGTTTTT+GGG + chr1_3:56269734-56269753 None:intergenic 30.0%
! TAGGTTATGACCATTGTTTT+TGG + chr1_3:56269735-56269754 None:intergenic 30.0%
CACATCTAAATGGTTTGATT+AGG + chr1_3:56269754-56269773 None:intergenic 30.0%
TTAAACGTAGCACATCTAAA+TGG + chr1_3:56269764-56269783 None:intergenic 30.0%
TAAAAAAATGCTGGCAGAGA+AGG + chr1_3:56266747-56266766 None:intergenic 35.0%
! TGGTAGAAAATGAGTTGGAT+TGG + chr1_3:56267249-56267268 None:intergenic 35.0%
TGTAATTACTCACTGCATTG+AGG - chr1_3:56267311-56267330 Msa0127050:CDS 35.0%
!! GCATTGAGGTTTTTGTTTGT+AGG - chr1_3:56267325-56267344 Msa0127050:CDS 35.0%
ATATTTGCAAAAGCAGGAGA+TGG - chr1_3:56267374-56267393 Msa0127050:CDS 35.0%
TCTTCTAGATTTGACAATGC+GGG - chr1_3:56267491-56267510 Msa0127050:CDS 35.0%
TGAGCTAAGGGATAAAAAGT+TGG - chr1_3:56267537-56267556 Msa0127050:CDS 35.0%
GATAAAAAGTTGGAGGTCTT+GGG - chr1_3:56267547-56267566 Msa0127050:CDS 35.0%
TCTTAACATCAACTGGATGA+TGG + chr1_3:56268029-56268048 None:intergenic 35.0%
ATGTGCTTGTTTAATGTAGG+TGG - chr1_3:56268081-56268100 Msa0127050:intron 35.0%
TTTCATGTCAGTGACACTAA+CGG - chr1_3:56268236-56268255 Msa0127050:CDS 35.0%
ACTGTACTTCATCTTGTTAG+TGG - chr1_3:56268471-56268490 Msa0127050:intron 35.0%
! TTTTTCCTGCTTTGTAACGT+TGG + chr1_3:56268607-56268626 None:intergenic 35.0%
AACATTTGCTTCAGTAGCTT+GGG + chr1_3:56268664-56268683 None:intergenic 35.0%
TATATCCTCTGAACCAAGTT+CGG + chr1_3:56268760-56268779 None:intergenic 35.0%
GTTGCTGAATTAACAGAAGA+AGG - chr1_3:56268807-56268826 Msa0127050:intron 35.0%
GTTAACTCTTCCTTAAGTAC+AGG - chr1_3:56268963-56268982 Msa0127050:CDS 35.0%
ATAAGAACAGTTTCAGAACC+AGG + chr1_3:56268993-56269012 None:intergenic 35.0%
!!! CATTGCTGATGTTAGTTTTG+TGG - chr1_3:56269028-56269047 Msa0127050:intron 35.0%
!! AAAGTGCTTTTACCAGCATT+AGG + chr1_3:56269059-56269078 None:intergenic 35.0%
ATAATTGTGGCTGATATTCC+TGG - chr1_3:56269176-56269195 Msa0127050:CDS 35.0%
AAGAAAAGGAATTTCACCGT+GGG - chr1_3:56269310-56269329 Msa0127050:five_prime_UTR 35.0%
TTATTTGCGACTATCAAGGA+TGG + chr1_3:56269395-56269414 None:intergenic 35.0%
AGTCGCAAATAAGATTGATG+AGG - chr1_3:56269403-56269422 Msa0127050:intron 35.0%
GCAAATAAGATTGATGAGGA+AGG - chr1_3:56269407-56269426 Msa0127050:intron 35.0%
ATCTTGCTCATACTTACAAG+AGG + chr1_3:56269619-56269638 None:intergenic 35.0%
TAAGTATGAGCAAGATAGAG+TGG - chr1_3:56269623-56269642 Msa0127050:intron 35.0%
!!! TTGTTTTTGGGAGTTCAGTT+TGG + chr1_3:56269722-56269741 None:intergenic 35.0%
AACTGAACTCCCAAAAACAA+TGG - chr1_3:56269722-56269741 Msa0127050:five_prime_UTR 35.0%
! TCAACATTTTACCGATACCC+TGG - chr1_3:56266587-56266606 Msa0127050:three_prime_UTR 40.0%
!!! TGTTTGTTGTTTTGGTGCCA+GGG + chr1_3:56266607-56266626 None:intergenic 40.0%
!!! TTGTTTGTTGTTTTGGTGCC+AGG + chr1_3:56266608-56266627 None:intergenic 40.0%
TCACGAATGTGTGAAGGATT+GGG + chr1_3:56266707-56266726 None:intergenic 40.0%
GAAAACTCACGAATGTGTGA+AGG + chr1_3:56266713-56266732 None:intergenic 40.0%
ATTGGAGATGAACCTGCAAA+GGG + chr1_3:56267231-56267250 None:intergenic 40.0%
CATGGTGGTAGAAAATGAGT+TGG + chr1_3:56267254-56267273 None:intergenic 40.0%
AGAAAATGCACCATCAGCTA+TGG + chr1_3:56267447-56267466 None:intergenic 40.0%
CTTCTAGATTTGACAATGCG+GGG - chr1_3:56267492-56267511 Msa0127050:CDS 40.0%
TTCTAGATTTGACAATGCGG+GGG - chr1_3:56267493-56267512 Msa0127050:CDS 40.0%
!! CTCTAACTGGTTTGAGCTAA+GGG - chr1_3:56267525-56267544 Msa0127050:CDS 40.0%
GCTAAGGGATAAAAAGTTGG+AGG - chr1_3:56267540-56267559 Msa0127050:CDS 40.0%
GGATAAAAAGTTGGAGGTCT+TGG - chr1_3:56267546-56267565 Msa0127050:CDS 40.0%
TTGTTTAATGTAGGTGGCAG+TGG - chr1_3:56268087-56268106 Msa0127050:intron 40.0%
AGATGAAGTACAGTGCCAAT+CGG + chr1_3:56268465-56268484 None:intergenic 40.0%
TGATCATCTACAAGTACACC+AGG + chr1_3:56268558-56268577 None:intergenic 40.0%
TACTTCCAACGTTACAAAGC+AGG - chr1_3:56268599-56268618 Msa0127050:intron 40.0%
GTCAATGCAATACATCCTAC+TGG - chr1_3:56268627-56268646 Msa0127050:intron 40.0%
CAACATTTGCTTCAGTAGCT+TGG + chr1_3:56268665-56268684 None:intergenic 40.0%
TCTAATGAAACTCCCGAACT+TGG - chr1_3:56268744-56268763 Msa0127050:intron 40.0%
ATATCCTCTGAACCAAGTTC+GGG + chr1_3:56268759-56268778 None:intergenic 40.0%
GCAACATTACTAAGGATCTC+TGG + chr1_3:56268792-56268811 None:intergenic 40.0%
CAACAGATTATTGTTGCTCG+TGG - chr1_3:56268831-56268850 Msa0127050:intron 40.0%
TCAACACGTAACCAATGTTC+AGG - chr1_3:56268929-56268948 Msa0127050:CDS 40.0%
TCCTTAAGTACAGGTTTACC+TGG - chr1_3:56268972-56268991 Msa0127050:CDS 40.0%
ACCAGGTAAACCTGTACTTA+AGG + chr1_3:56268976-56268995 None:intergenic 40.0%
!! GCTGGTAAAAGCACTTTACT+TGG - chr1_3:56269062-56269081 Msa0127050:intron 40.0%
ATTCCCTAAATTCGGCCTAA+GGG + chr1_3:56269135-56269154 None:intergenic 40.0%
AATTCCCTAAATTCGGCCTA+AGG + chr1_3:56269136-56269155 None:intergenic 40.0%
! GGTGAAATTCCTTTTCTTCC+CGG + chr1_3:56269308-56269327 None:intergenic 40.0%
GAAGAAAAGGAATTTCACCG+TGG - chr1_3:56269309-56269328 Msa0127050:five_prime_UTR 40.0%
AAGTCTTTCAGTTGTTCCCA+CGG + chr1_3:56269329-56269348 None:intergenic 40.0%
ATCTGGAGGGTTTATCCAAT+CGG - chr1_3:56269369-56269388 Msa0127050:intron 40.0%
AGAGTTAAAGAGAAGAGTCC+AGG - chr1_3:56269448-56269467 Msa0127050:intron 40.0%
GAGTTAAAGAGAAGAGTCCA+GGG - chr1_3:56269449-56269468 Msa0127050:intron 40.0%
TTGTTTACTTCCCCTGTACT+TGG - chr1_3:56269670-56269689 Msa0127050:five_prime_UTR 40.0%
!!! TTGTTTTGGTGCCAGGGTAT+CGG + chr1_3:56266601-56266620 None:intergenic 45.0%
CACGAATGTGTGAAGGATTG+GGG + chr1_3:56266706-56266725 None:intergenic 45.0%
CTCACGAATGTGTGAAGGAT+TGG + chr1_3:56266708-56266727 None:intergenic 45.0%
! ATTGGGGAATTTTGTCGAGC+AGG + chr1_3:56266929-56266948 None:intergenic 45.0%
CTCGAACTTGTGTATCGAGA+TGG - chr1_3:56267149-56267168 Msa0127050:CDS 45.0%
TTGGAGATGAACCTGCAAAG+GGG + chr1_3:56267230-56267249 None:intergenic 45.0%
GATTGGAGATGAACCTGCAA+AGG + chr1_3:56267232-56267251 None:intergenic 45.0%
TTTGCAAAAGCAGGAGATGG+TGG - chr1_3:56267377-56267396 Msa0127050:CDS 45.0%
! AAAGCAGGAGATGGTGGTAA+CGG - chr1_3:56267383-56267402 Msa0127050:CDS 45.0%
! CCTTTCTATCATGTCGACTG+CGG + chr1_3:56267424-56267443 None:intergenic 45.0%
GATAGAAAGGCCATAGCTGA+TGG - chr1_3:56267434-56267453 Msa0127050:CDS 45.0%
!! GCTCTAACTGGTTTGAGCTA+AGG - chr1_3:56267524-56267543 Msa0127050:CDS 45.0%
TTTAATGTAGGTGGCAGTGG+TGG - chr1_3:56268090-56268109 Msa0127050:intron 45.0%
TTAATGTAGGTGGCAGTGGT+GGG - chr1_3:56268091-56268110 Msa0127050:intron 45.0%
! GGTAGGTGGTGATGTAATTC+TGG - chr1_3:56268113-56268132 Msa0127050:intron 45.0%
TGGAATGCTCTCGTAGAGTT+TGG - chr1_3:56268133-56268152 Msa0127050:intron 45.0%
GGAATGCTCTCGTAGAGTTT+GGG - chr1_3:56268134-56268153 Msa0127050:intron 45.0%
! CGTAGAGTTTGGGATTTCAG+TGG - chr1_3:56268144-56268163 Msa0127050:intron 45.0%
GCATGGTAGATAGCAGGTAA+TGG - chr1_3:56268260-56268279 Msa0127050:intron 45.0%
! TGGTAGATAGCAGGTAATGG+AGG - chr1_3:56268263-56268282 Msa0127050:intron 45.0%
!! ATAGCAGGTAATGGAGGACA+TGG - chr1_3:56268269-56268288 Msa0127050:intron 45.0%
AATAACCTTATCAGCACCCC+TGG + chr1_3:56268318-56268337 None:intergenic 45.0%
! TAGGTTGTTCGTGTACCGAT+TGG - chr1_3:56268447-56268466 Msa0127050:intron 45.0%
CAGATTATTGTTGCTCGTGG+AGG - chr1_3:56268834-56268853 Msa0127050:intron 45.0%
ACTGTCAGTGTCCTGAACAT+TGG + chr1_3:56268943-56268962 None:intergenic 45.0%
TTTGTGGGAATGCCTAATGC+TGG - chr1_3:56269044-56269063 Msa0127050:intron 45.0%
ACTATGCCTTCACTACCCTT+AGG - chr1_3:56269117-56269136 Msa0127050:intron 45.0%
ACTACCCTTAGGCCGAATTT+AGG - chr1_3:56269128-56269147 Msa0127050:CDS 45.0%
CTACCCTTAGGCCGAATTTA+GGG - chr1_3:56269129-56269148 Msa0127050:CDS 45.0%
TGTGCACCCTTTATAAGTCC+AGG + chr1_3:56269197-56269216 None:intergenic 45.0%
! CATGTCCAAGTCCACGATTT+TGG + chr1_3:56269220-56269239 None:intergenic 45.0%
GTGGGAACAACTGAAAGACT+TGG - chr1_3:56269328-56269347 Msa0127050:intron 45.0%
! TCTAGAGCTTGAGTACCATC+TGG - chr1_3:56269352-56269371 Msa0127050:intron 45.0%
GATTGGATAAACCCTCCAGA+TGG + chr1_3:56269370-56269389 None:intergenic 45.0%
ACAGCACTCACAGCAAAGAT+AGG + chr1_3:56269479-56269498 None:intergenic 45.0%
!!! CTTTGCTGTGAGTGCTGTTT+TGG - chr1_3:56269481-56269500 Msa0127050:intron 45.0%
!!! TGAGTGCTGTTTTGGAGGAA+GGG - chr1_3:56269489-56269508 Msa0127050:intron 45.0%
!! CTAAGACCAGCTTTAAGCTC+TGG + chr1_3:56269518-56269537 None:intergenic 45.0%
! GGTCTTAGAGTGCTTGTCAA+TGG - chr1_3:56269530-56269549 Msa0127050:intron 45.0%
ACACTCAACTCCAAGTACAG+GGG + chr1_3:56269683-56269702 None:intergenic 45.0%
CACACTCAACTCCAAGTACA+GGG + chr1_3:56269684-56269703 None:intergenic 45.0%
ACACACTCAACTCCAAGTAC+AGG + chr1_3:56269685-56269704 None:intergenic 45.0%
! TTGGAGTTGAGTGTGTTGCT+TGG - chr1_3:56269689-56269708 Msa0127050:five_prime_UTR 45.0%
AGGATTGGGGTCGAATTGGT+TGG + chr1_3:56266693-56266712 None:intergenic 50.0%
GTGAAGGATTGGGGTCGAAT+TGG + chr1_3:56266697-56266716 None:intergenic 50.0%
!! GCAAGCTTAGACTTGCTGTG+AGG + chr1_3:56267208-56267227 None:intergenic 50.0%
CCGCAGTCGACATGATAGAA+AGG - chr1_3:56267421-56267440 Msa0127050:CDS 50.0%
GATTTGACAATGCGGGGGAT+CGG - chr1_3:56267498-56267517 Msa0127050:CDS 50.0%
ATTTGACAATGCGGGGGATC+GGG - chr1_3:56267499-56267518 Msa0127050:CDS 50.0%
TAATGTAGGTGGCAGTGGTG+GGG - chr1_3:56268092-56268111 Msa0127050:intron 50.0%
TCAGTGACACTAACGGTGCA+TGG - chr1_3:56268243-56268262 Msa0127050:CDS 50.0%
AACGGTGCATGGTAGATAGC+AGG - chr1_3:56268254-56268273 Msa0127050:intron 50.0%
CTCGGCAGATTTAGACCCTT+GGG - chr1_3:56268527-56268546 Msa0127050:intron 50.0%
TTAGACCCTTGGGATGTTCC+TGG - chr1_3:56268537-56268556 Msa0127050:intron 50.0%
GTACACCAGGAACATCCCAA+GGG + chr1_3:56268545-56268564 None:intergenic 50.0%
AGTACACCAGGAACATCCCA+AGG + chr1_3:56268546-56268565 None:intergenic 50.0%
TGGAAGTAGAACCATCGCGA+GGG + chr1_3:56268587-56268606 None:intergenic 50.0%
TTGGAAGTAGAACCATCGCG+AGG + chr1_3:56268588-56268607 None:intergenic 50.0%
AACTCCCGAACTTGGTTCAG+AGG - chr1_3:56268752-56268771 Msa0127050:intron 50.0%
ATTGTTGCTCGTGGAGGAGA+AGG - chr1_3:56268840-56268859 Msa0127050:intron 50.0%
AAGGCATAGTGACCAACAGC+AGG + chr1_3:56269107-56269126 None:intergenic 50.0%
ATTCGGCCTAAGGGTAGTGA+AGG + chr1_3:56269126-56269145 None:intergenic 50.0%
! AAGGGTGCACACCAAAATCG+TGG - chr1_3:56269206-56269225 Msa0127050:CDS 50.0%
GCACACCAAAATCGTGGACT+TGG - chr1_3:56269212-56269231 Msa0127050:CDS 50.0%
GAACCTTCGTGCGTTCTATG+TGG + chr1_3:56269253-56269272 None:intergenic 50.0%
CATAGAACGCACGAAGGTTC+TGG - chr1_3:56269253-56269272 Msa0127050:exon 50.0%
!! CACGAAGGTTCTGGCTTATG+TGG - chr1_3:56269262-56269281 Msa0127050:five_prime_UTR 50.0%
! TCTGGCTTATGTGGTAGACG+TGG - chr1_3:56269271-56269290 Msa0127050:five_prime_UTR 50.0%
! GCTGCTTTACCGGGAAGAAA+AGG - chr1_3:56269296-56269315 Msa0127050:five_prime_UTR 50.0%
AGAGCTTGAGTACCATCTGG+AGG - chr1_3:56269355-56269374 Msa0127050:intron 50.0%
GAGCTTGAGTACCATCTGGA+GGG - chr1_3:56269356-56269375 Msa0127050:intron 50.0%
GACTATCAAGGATGGCCGAT+TGG + chr1_3:56269387-56269406 None:intergenic 50.0%
!! GATTGATGAGGAAGGTGCTG+AGG - chr1_3:56269415-56269434 Msa0127050:intron 50.0%
CAGCAAAGATAGGAACACCC+TGG + chr1_3:56269469-56269488 None:intergenic 50.0%
!!! TGCTGTGAGTGCTGTTTTGG+AGG - chr1_3:56269484-56269503 Msa0127050:intron 50.0%
!!! GTGAGTGCTGTTTTGGAGGA+AGG - chr1_3:56269488-56269507 Msa0127050:intron 50.0%
GGGATACCAGAGCTTAAAGC+TGG - chr1_3:56269509-56269528 Msa0127050:intron 50.0%
GTCTAAGCTTGCCCCTTTGC+AGG - chr1_3:56267216-56267235 Msa0127050:CDS 55.0%
GGAGGTCTTGGGTTCAAACC+CGG - chr1_3:56267558-56267577 Msa0127050:CDS 55.0%
!! AGGAACCAGGGGTGCTGATA+AGG - chr1_3:56268310-56268329 Msa0127050:intron 55.0%
CCAAGGGTCTAAATCTGCCG+AGG + chr1_3:56268529-56268548 None:intergenic 55.0%
CCTCGGCAGATTTAGACCCT+TGG - chr1_3:56268526-56268545 Msa0127050:intron 55.0%
AGTAGAACCATCGCGAGGGT+CGG + chr1_3:56268583-56268602 None:intergenic 55.0%
TGGGATGAAGAGCAGCCAGT+AGG + chr1_3:56268645-56268664 None:intergenic 55.0%
TTCGTAGTCGGAGGCTTCCT+AGG + chr1_3:56268897-56268916 None:intergenic 55.0%
TAGGAAGCCTCCGACTACGA+AGG - chr1_3:56268896-56268915 Msa0127050:intron 55.0%
TCGAGAGCTAAGCCTGCTGT+TGG - chr1_3:56269092-56269111 Msa0127050:intron 55.0%
!! AGACGTGGCTGCTGCTTTAC+CGG - chr1_3:56269286-56269305 Msa0127050:five_prime_UTR 55.0%
!! GGGGATCGGGTAGCTCTAAC+TGG - chr1_3:56267512-56267531 Msa0127050:CDS 60.0%
GATCATTCCGACCCTCGCGA+TGG - chr1_3:56268573-56268592 Msa0127050:intron 60.0%
GTTGCTCGTGGAGGAGAAGG+TGG - chr1_3:56268843-56268862 Msa0127050:intron 60.0%
CGTGGAGGAGAAGGTGGTCT+CGG - chr1_3:56268849-56268868 Msa0127050:intron 60.0%
AAGCCTCCGACTACGAAGGC+AGG - chr1_3:56268900-56268919 Msa0127050:intron 60.0%
AGCCTCCGACTACGAAGGCA+GGG - chr1_3:56268901-56268920 Msa0127050:intron 60.0%
CCTACCCCTGCCTTCGTAGT+CGG + chr1_3:56268909-56268928 None:intergenic 60.0%
GCGCCACATAGAACGCACGA+AGG - chr1_3:56269247-56269266 Msa0127050:exon 60.0%
!! GACGTGGCTGCTGCTTTACC+GGG - chr1_3:56269287-56269306 Msa0127050:five_prime_UTR 60.0%
! ATGTCGACTGCGGCGAGAGC+TGG + chr1_3:56267414-56267433 None:intergenic 65.0%
! GTAGGTGGCAGTGGTGGGGT+AGG - chr1_3:56268096-56268115 Msa0127050:intron 65.0%
GCCTCCGACTACGAAGGCAG+GGG - chr1_3:56268902-56268921 Msa0127050:intron 65.0%
ACCCCTGCCTTCGTAGTCGG+AGG + chr1_3:56268906-56268925 None:intergenic 65.0%
CCGACTACGAAGGCAGGGGT+AGG - chr1_3:56268906-56268925 Msa0127050:intron 65.0%
! GGTGGCAGTGGTGGGGTAGG+TGG - chr1_3:56268099-56268118 Msa0127050:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56266563 56269801 56266563 ID=Msa0127050;Name=Msa0127050
chr1_3 mRNA 56266563 56269801 56266563 ID=Msa0127050-mRNA-1;Parent=Msa0127050;Name=Msa0127050-mRNA-1;_AED=0.03;_eAED=0.03;_QI=231|1|1|1|0.8|0.66|6|203|512
chr1_3 exon 56266563 56267914 56266563 ID=Msa0127050-mRNA-1:exon:17677;Parent=Msa0127050-mRNA-1
chr1_3 exon 56268033 56268095 56268033 ID=Msa0127050-mRNA-1:exon:17676;Parent=Msa0127050-mRNA-1
chr1_3 exon 56268182 56268264 56268182 ID=Msa0127050-mRNA-1:exon:17675;Parent=Msa0127050-mRNA-1
chr1_3 exon 56268909 56269017 56268909 ID=Msa0127050-mRNA-1:exon:17674;Parent=Msa0127050-mRNA-1
chr1_3 exon 56269127 56269332 56269127 ID=Msa0127050-mRNA-1:exon:17673;Parent=Msa0127050-mRNA-1
chr1_3 exon 56269642 56269801 56269642 ID=Msa0127050-mRNA-1:exon:17672;Parent=Msa0127050-mRNA-1
chr1_3 five_prime_UTR 56269642 56269801 56269642 ID=Msa0127050-mRNA-1:five_prime_utr;Parent=Msa0127050-mRNA-1
chr1_3 five_prime_UTR 56269262 56269332 56269262 ID=Msa0127050-mRNA-1:five_prime_utr;Parent=Msa0127050-mRNA-1
chr1_3 CDS 56269127 56269261 56269127 ID=Msa0127050-mRNA-1:cds;Parent=Msa0127050-mRNA-1
chr1_3 CDS 56268909 56269017 56268909 ID=Msa0127050-mRNA-1:cds;Parent=Msa0127050-mRNA-1
chr1_3 CDS 56268182 56268264 56268182 ID=Msa0127050-mRNA-1:cds;Parent=Msa0127050-mRNA-1
chr1_3 CDS 56268033 56268095 56268033 ID=Msa0127050-mRNA-1:cds;Parent=Msa0127050-mRNA-1
chr1_3 CDS 56266766 56267914 56266766 ID=Msa0127050-mRNA-1:cds;Parent=Msa0127050-mRNA-1
chr1_3 three_prime_UTR 56266563 56266765 56266563 ID=Msa0127050-mRNA-1:three_prime_utr;Parent=Msa0127050-mRNA-1
Gene Sequence

>Msa0127050

ATGTTGGTGTTTGAAGCAAGATATGTTCGACAAGTAGAAGCTTTTACTCGAACTTGTGTATCGAGATGGTCTACTGTATTTTATTCTTGTTATTCAGATTCTCCTCACAGCAAGTCTAAGCTTGCCCCTTTGCAGGAGAGAAGAATGATTGACAAAGTTAAGATATTTGCAAAAGCAGGAGATGGTGGTAACGGTTGCACCAGCTCTCGCCGCAGTCGACATGATAGAAAGGCCATAGCTGATGGTGGCAGTGGTGGGGTAGGTGGTGATGTAATTCTGGAATGCTCTCGTAGAGTTTGGGATTTCAGTGGTCTGCAGCGTCATCTAATAGCAGGTAATGGAGGACATGGATCATCAAAAAATAAGATAGGAACCAGGGGTGCTGATAAGGTTGTTCGTGTACCGATTGGCACTGTACTTCATCTTGTTAGTGGTGATATTCCTTCTATAGTAAAAAAAGTTCAATCCTCGGCAGATTTAGACCCTTGGGATGTTCCTGGTGTACTTGTAGATGATCATTCCGACCCTCGCGATGGTTCTACTTCCAACGTTACAAAGCAGGAAAAAGTCAATGCAATACATCCTACTGGCTGCTCTTCATCCCAAGCTACTGAAGCAAATGTTGAGAAGTCTGTAAAATCTACATGTGTTGCATCAGCAGATGTACTTTCTCAACTTTCATCTTCTAATGAAACTCCCGAACTTGGTTCAGAGGATATAGAAGAGAAACCAGAGATCCTTAGTAATGTTGCTGAATTAACAGAAGAAGGTCAACAGATTATTGTTGCTCGTGGAGGAGAAGGTGGTCTCGGTAATGTGTCTATTCAAAAAGATCCTAGGAAGCCTCCGACTACGAAGGCAGGGGTAGGTCAACACGTAACCAATGTTCAGGACACTGACAGTGTTAACTCTTCCTTAAGTACAGGTTTACCTGGTTCTGAAACTGTTCTTATATTAGAATTGAAGTGCATTGCTGATGTTAGTTTTGTGGGAATGCCTAATGCTGGTAAAAGCACTTTACTTGGAGCTATATCGAGAGCTAAGCCTGCTGTTGGTCACTATGCCTTCACTACCCTTAGGCCGAATTTAGGGAATTTGAACTATGATGATATGTCGATAATTGTGGCTGATATTCCTGGACTTATAAAGGGTGCACACCAAAATCGTGGACTTGGACATGCATTTCTGCGCCACATAGAACGCACGAAGGTTCTGGCTTATGTGGTAGACGTGGCTGCTGCTTTACCGGGAAGAAAAGGAATTTCACCGTGGGAACAACTGAAAGACTTGGTTCTAGAGCTTGAGTACCATCTGGAGGGTTTATCCAATCGGCCATCCTTGATAGTCGCAAATAAGATTGATGAGGAAGGTGCTGAGGAAGTGTATGAAGAGTTAAAGAGAAGAGTCCAGGGTGTTCCTATCTTTGCTGTGAGTGCTGTTTTGGAGGAAGGGATACCAGAGCTTAAAGCTGGTCTTAGAGTGCTTGTCAATGGTGAAACTTCATGCCCACTTTACCTAGATCAAATATCGCATGATTAG

Protein sequence

>Msa0127050

MLVFEARYVRQVEAFTRTCVSRWSTVFYSCYSDSPHSKSKLAPLQERRMIDKVKIFAKAGDGGNGCTSSRRSRHDRKAIADGGSGGVGGDVILECSRRVWDFSGLQRHLIAGNGGHGSSKNKIGTRGADKVVRVPIGTVLHLVSGDIPSIVKKVQSSADLDPWDVPGVLVDDHSDPRDGSTSNVTKQEKVNAIHPTGCSSSQATEANVEKSVKSTCVASADVLSQLSSSNETPELGSEDIEEKPEILSNVAELTEEGQQIIVARGGEGGLGNVSIQKDPRKPPTTKAGVGQHVTNVQDTDSVNSSLSTGLPGSETVLILELKCIADVSFVGMPNAGKSTLLGAISRAKPAVGHYAFTTLRPNLGNLNYDDMSIIVADIPGLIKGAHQNRGLGHAFLRHIERTKVLAYVVDVAAALPGRKGISPWEQLKDLVLELEYHLEGLSNRPSLIVANKIDEEGAEEVYEELKRRVQGVPIFAVSAVLEEGIPELKAGLRVLVNGETSCPLYLDQISHD*