Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077360 | XP_003590794.1 | 94.118 | 255 | 15 | 0 | 1 | 255 | 1 | 255 | 2.07e-175 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077360 | sp|Q682V0|XRCC4_ARATH | 58.898 | 236 | 92 | 2 | 4 | 238 | 22 | 253 | 1.12e-95 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077360 | G7I3Z1 | 94.118 | 255 | 15 | 0 | 1 | 255 | 1 | 255 | 9.89e-176 | 493 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077360 | Msa0243090 | 0.808376 | 3.192252e-50 | -8.615850e-47 |
| Msa0077360 | Msa0698540 | 0.800450 | 1.432798e-48 | -8.615850e-47 |
| Msa0077360 | Msa0969810 | 0.800858 | 1.183089e-48 | -8.615850e-47 |
| Msa0077360 | Msa1048160 | 0.813174 | 2.924439e-51 | -8.615850e-47 |
| Msa0077360 | Msa1129730 | 0.801756 | 7.750426e-49 | -8.615850e-47 |
| Msa0077360 | Msa1225130 | 0.803818 | 2.907847e-49 | -8.615850e-47 |
| Msa0077360 | Msa1254730 | 0.804555 | 2.042398e-49 | -8.615850e-47 |
| Msa0077360 | Msa1454570 | 0.806006 | 1.014461e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077360 | MtrunA17_Chr1g0187151 | 94.118 | 255 | 15 | 0 | 1 | 255 | 1 | 255 | 1.90e-179 | 493 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077360 | AT3G23100.1 | 58.898 | 236 | 92 | 2 | 4 | 238 | 22 | 253 | 1.14e-96 | 284 |
| Msa0077360 | AT3G23100.2 | 58.898 | 236 | 92 | 2 | 4 | 238 | 22 | 253 | 1.14e-96 | 284 |
| Msa0077360 | AT1G61410.1 | 53.153 | 111 | 47 | 2 | 129 | 238 | 1 | 107 | 3.44e-28 | 104 |
Find 72 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGACTCACATGACAAATT+AGG | 0.200797 | 1_2:+54246430 | Msa0077360:exon |
| GGAATTGTCTGAGCGGTATT+TGG | 0.234417 | 1_2:+54242568 | Msa0077360:CDS |
| AAAAGTGTATTACTAGTTCT+TGG | 0.254859 | 1_2:+54246367 | Msa0077360:CDS |
| GTATTACCATGCTTGATTGT+AGG | 0.288679 | 1_2:-54246662 | None:intergenic |
| TAGACTCACATGACAAATTA+GGG | 0.306400 | 1_2:+54246431 | Msa0077360:exon |
| GAATTGTCTGAGCGGTATTT+GGG | 0.316473 | 1_2:+54242569 | Msa0077360:CDS |
| AAAAGTGAAACCATAGTTCT+AGG | 0.324553 | 1_2:-54246605 | None:intergenic |
| GAAAACTACGGCAGAAATAT+TGG | 0.327822 | 1_2:+54243472 | Msa0077360:CDS |
| TATTACCATGCTTGATTGTA+GGG | 0.329430 | 1_2:-54246661 | None:intergenic |
| TAAATGCACCCCTAGAACTA+TGG | 0.338765 | 1_2:+54246595 | Msa0077360:three_prime_UTR |
| TGATATCTCTGTCTCATAAT+TGG | 0.339902 | 1_2:+54246562 | Msa0077360:three_prime_UTR |
| TTCAAATTCCACCCTTTCAT+TGG | 0.363589 | 1_2:-54245854 | None:intergenic |
| CACGAATATTGATTCTTCTT+CGG | 0.369660 | 1_2:-54242324 | None:intergenic |
| TGTACAAAATTCACTTAAGT+TGG | 0.371961 | 1_2:+54246521 | Msa0077360:three_prime_UTR |
| TATTTGGGGTTTCGACAACC+TGG | 0.386028 | 1_2:+54242584 | Msa0077360:CDS |
| GTTTATGCATTTGCTGATGC+TGG | 0.406007 | 1_2:+54242611 | Msa0077360:CDS |
| TCACCGACGGTTTCACCGCT+TGG | 0.415773 | 1_2:+54242384 | Msa0077360:CDS |
| CAATATTCGTGAAGGGTACA+TGG | 0.456988 | 1_2:+54242336 | Msa0077360:CDS |
| ACTAGTTCTTGGAAGGATGT+TGG | 0.457050 | 1_2:+54246378 | Msa0077360:CDS |
| TGCTGCTCAGTGGGACCAGC+CGG | 0.460985 | 1_2:+54242532 | Msa0077360:CDS |
| AAAGTGAAACCATAGTTCTA+GGG | 0.462810 | 1_2:-54246604 | None:intergenic |
| TTCTCATGGATGCAAACATA+AGG | 0.465523 | 1_2:+54243498 | Msa0077360:CDS |
| CATGTGAGTCTAGTTCTCCT+TGG | 0.474048 | 1_2:-54246420 | None:intergenic |
| ATGCTGGTGATGCTCATAAG+AGG | 0.491015 | 1_2:+54242627 | Msa0077360:CDS |
| AGAAATATTGGACTTTCTCA+TGG | 0.495276 | 1_2:+54243484 | Msa0077360:CDS |
| AGCGGTGAAACCGTCGGTGA+TGG | 0.496517 | 1_2:-54242381 | None:intergenic |
| GAAGCAGCGTGCTGCTCAGT+GGG | 0.503408 | 1_2:+54242523 | Msa0077360:CDS |
| TCTATAATCTATAATATATG+TGG | 0.509011 | 1_2:+54246923 | Msa0077360:three_prime_UTR |
| AAATTACTGTAACAATTTGA+AGG | 0.515198 | 1_2:-54242228 | None:intergenic |
| GAATGACACTGCATTGGAGA+TGG | 0.516889 | 1_2:+54243423 | Msa0077360:CDS |
| GTGAGAGAATAGCCAATGAA+AGG | 0.523831 | 1_2:+54245842 | Msa0077360:CDS |
| TTGTACAAATATGAAATCCA+TGG | 0.537972 | 1_2:-54246505 | None:intergenic |
| AGGGAGGAATGACACTGCAT+TGG | 0.540751 | 1_2:+54243417 | Msa0077360:CDS |
| GTGTATTACTAGTTCTTGGA+AGG | 0.546840 | 1_2:+54246371 | Msa0077360:CDS |
| TGAGAGAATAGCCAATGAAA+GGG | 0.557370 | 1_2:+54245843 | Msa0077360:CDS |
| AGAAGAATCAATATTCGTGA+AGG | 0.557463 | 1_2:+54242328 | Msa0077360:CDS |
| CCACGTACTCTTCCACCGGC+TGG | 0.560726 | 1_2:-54242547 | None:intergenic |
| GTTGTCGTGGACGTTTGAGA+AGG | 0.561969 | 1_2:+54243397 | Msa0077360:intron |
| ATTAGAAGCTGAGAAGTGCT+TGG | 0.565059 | 1_2:+54245813 | Msa0077360:CDS |
| TATCTCTGTCTCATAATTGG+TGG | 0.571643 | 1_2:+54246565 | Msa0077360:three_prime_UTR |
| CAGCTGTCAAAACAAGATAA+CGG | 0.575664 | 1_2:+54246255 | Msa0077360:CDS |
| TTCAACCTCTCCATCACCGA+CGG | 0.579618 | 1_2:+54242371 | Msa0077360:CDS |
| ATTTGGGGTTTCGACAACCT+GGG | 0.580929 | 1_2:+54242585 | Msa0077360:CDS |
| TTGTCGTGGACGTTTGAGAA+GGG | 0.583754 | 1_2:+54243398 | Msa0077360:CDS |
| GAGATATCACAAGGGGCTTG+TGG | 0.585907 | 1_2:-54246548 | None:intergenic |
| TGTGAATGTTGCAGTTGTCG+TGG | 0.589936 | 1_2:+54243384 | Msa0077360:intron |
| TCCTGATTGTAAGAAAACTA+CGG | 0.591527 | 1_2:+54243460 | Msa0077360:CDS |
| CAAGTAAGCGTTCTCGTCCA+AGG | 0.592810 | 1_2:+54246403 | Msa0077360:CDS |
| TGCTCAGTGGGACCAGCCGG+TGG | 0.593157 | 1_2:+54242535 | Msa0077360:CDS |
| GAAGAATCAATATTCGTGAA+GGG | 0.593164 | 1_2:+54242329 | Msa0077360:CDS |
| CGGCAACAAATCTCTTCAAG+AGG | 0.596675 | 1_2:+54246275 | Msa0077360:CDS |
| AATTCCACGTACTCTTCCAC+CGG | 0.602320 | 1_2:-54242551 | None:intergenic |
| TGAATCTCAAATCTATACAA+AGG | 0.608331 | 1_2:+54245873 | Msa0077360:CDS |
| TGAAACCGTCGGTGATGGAG+AGG | 0.615675 | 1_2:-54242376 | None:intergenic |
| ATTACCATGCTTGATTGTAG+GGG | 0.617395 | 1_2:-54246660 | None:intergenic |
| TGAAGCAGCGTGCTGCTCAG+TGG | 0.619678 | 1_2:+54242522 | Msa0077360:CDS |
| CCAGCCGGTGGAAGAGTACG+TGG | 0.619854 | 1_2:+54242547 | Msa0077360:CDS |
| TCGTGGACGTTTGAGAAGGG+AGG | 0.620819 | 1_2:+54243401 | Msa0077360:CDS |
| GTTCCAAGCGGTGAAACCGT+CGG | 0.634326 | 1_2:-54242387 | None:intergenic |
| TTCACCGCTTGGAACTGCAA+CGG | 0.635648 | 1_2:+54242395 | Msa0077360:CDS |
| AAGTGAAACCATAGTTCTAG+GGG | 0.641999 | 1_2:-54246603 | None:intergenic |
| GCAAATGCATAAACAGACCC+AGG | 0.643154 | 1_2:-54242602 | None:intergenic |
| AATTGTCTGAGCGGTATTTG+GGG | 0.650141 | 1_2:+54242570 | Msa0077360:CDS |
| ACAACCCCTACAATCAAGCA+TGG | 0.654792 | 1_2:+54246656 | Msa0077360:three_prime_UTR |
| GAGAATAGCCAATGAAAGGG+TGG | 0.673255 | 1_2:+54245846 | Msa0077360:CDS |
| TATGAGACAGAGATATCACA+AGG | 0.676321 | 1_2:-54246557 | None:intergenic |
| TGCTGGTGATGCTCATAAGA+GGG | 0.680650 | 1_2:+54242628 | Msa0077360:CDS |
| TGAGACAGAGATATCACAAG+GGG | 0.681408 | 1_2:-54246555 | None:intergenic |
| AGACTCACATGACAAATTAG+GGG | 0.696348 | 1_2:+54246432 | Msa0077360:exon |
| ATGAGACAGAGATATCACAA+GGG | 0.714569 | 1_2:-54246556 | None:intergenic |
| AGTACCGTTGCAGTTCCAAG+CGG | 0.722808 | 1_2:-54242399 | None:intergenic |
| AGTACGTGGAATTGTCTGAG+CGG | 0.752537 | 1_2:+54242561 | Msa0077360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATATTTTTTTTTTGTTT+TGG | - | chr1_2:54242924-54242943 | None:intergenic | 10.0% |
| !! | ATCAAAAAAAAAAAAATTGT+TGG | - | chr1_2:54245111-54245130 | None:intergenic | 10.0% |
| !! | AATATCAAAAAAAAAATTGT+TGG | - | chr1_2:54245263-54245282 | None:intergenic | 10.0% |
| !!! | CTTTTCTCAAATTATTATTA+AGG | - | chr1_2:54242711-54242730 | None:intergenic | 15.0% |
| !!! | TAGTGTTAATTTTTTGAAAT+AGG | + | chr1_2:54242991-54243010 | Msa0077360:intron | 15.0% |
| !! | AAACAGAATGATATAAAAAA+TGG | - | chr1_2:54243303-54243322 | None:intergenic | 15.0% |
| !!! | ATTTAAAATTTCTACCTAAA+TGG | - | chr1_2:54244011-54244030 | None:intergenic | 15.0% |
| !!! | TAGAAATTTTAAATTACAGT+TGG | + | chr1_2:54244017-54244036 | Msa0077360:intron | 15.0% |
| !! | AAAAAAAAAAATTGTTGGAT+TGG | - | chr1_2:54245106-54245125 | None:intergenic | 15.0% |
| !!! | ATTTTTACAAAAGATGATTA+AGG | - | chr1_2:54245156-54245175 | None:intergenic | 15.0% |
| !!! | ATTTTTACAAAAGATGATTA+AGG | - | chr1_2:54245156-54245175 | None:intergenic | 15.0% |
| !! | ATGTTCAAAACTAAATAAAA+GGG | - | chr1_2:54245456-54245475 | None:intergenic | 15.0% |
| !! | TCTTCTATTTATGTATAAAA+GGG | - | chr1_2:54245539-54245558 | None:intergenic | 15.0% |
| !! | ATAAAAGTTAGTTAGTTAAT+TGG | - | chr1_2:54245701-54245720 | None:intergenic | 15.0% |
| !! | AAATTACTGTAACAATTTGA+AGG | - | chr1_2:54242231-54242250 | None:intergenic | 20.0% |
| !!! | TTGATTTTGATTTTGATTTG+TGG | + | chr1_2:54242463-54242482 | Msa0077360:intron | 20.0% |
| !!! | TGATTTTGATTTTGATTTGT+GGG | + | chr1_2:54242464-54242483 | Msa0077360:intron | 20.0% |
| !!! | GTTGAATTTTTTTTTAGCAT+CGG | + | chr1_2:54242490-54242509 | Msa0077360:intron | 20.0% |
| !! | TACAAAAAATAACAAACAGT+TGG | - | chr1_2:54242660-54242679 | None:intergenic | 20.0% |
| !! | ATAATATGAAGTGAAATAGA+AGG | + | chr1_2:54242964-54242983 | Msa0077360:intron | 20.0% |
| !! | AATAGGAATGTAATGTTTAA+CGG | + | chr1_2:54243672-54243691 | Msa0077360:intron | 20.0% |
| !!! | ACTACTTATTTTATGTGAAA+TGG | + | chr1_2:54243736-54243755 | Msa0077360:intron | 20.0% |
| !! | GAACACAATATGATTAAATA+AGG | - | chr1_2:54243980-54243999 | None:intergenic | 20.0% |
| !! | AAGGTAATTAATAATGTAAG+AGG | - | chr1_2:54244108-54244127 | None:intergenic | 20.0% |
| !!! | TATCAAAAAGATACATTTTG+TGG | - | chr1_2:54244430-54244449 | None:intergenic | 20.0% |
| !! | TCTTAAACTTGAGTAAATAT+GGG | + | chr1_2:54244494-54244513 | Msa0077360:intron | 20.0% |
| !! | AGTTTCAATATCCATAAAAT+AGG | - | chr1_2:54244580-54244599 | None:intergenic | 20.0% |
| !! | AAACTAGAAAAATAAGAAAC+AGG | - | chr1_2:54244645-54244664 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAACTGTTGGAT+TGG | - | chr1_2:54244894-54244913 | None:intergenic | 20.0% |
| !! | TGATCAAAAAAAAAAACTGT+TGG | - | chr1_2:54244899-54244918 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGATCATTCACA+TGG | + | chr1_2:54244905-54244924 | Msa0077360:intron | 20.0% |
| !! | AAAAAAAAAAACTGTTGGAT+TGG | - | chr1_2:54244894-54244913 | None:intergenic | 20.0% |
| !! | TGATCAAAAAAAAAAACTGT+TGG | - | chr1_2:54244899-54244918 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGATCATTCACA+TGG | + | chr1_2:54244905-54244924 | Msa0077360:intron | 20.0% |
| !! | CAAAAAAAAAATTGTTGGAT+TGG | - | chr1_2:54245258-54245277 | None:intergenic | 20.0% |
| !! | GATGTTCAAAACTAAATAAA+AGG | - | chr1_2:54245457-54245476 | None:intergenic | 20.0% |
| !! | AAAATGCATATAATCAAACA+TGG | - | chr1_2:54245488-54245507 | None:intergenic | 20.0% |
| !! | CTCTTCTATTTATGTATAAA+AGG | - | chr1_2:54245540-54245559 | None:intergenic | 20.0% |
| ! | CGATCAAAATTCAAAAATCT+GGG | - | chr1_2:54242261-54242280 | None:intergenic | 25.0% |
| ! | TCGATCAAAATTCAAAAATC+TGG | - | chr1_2:54242262-54242281 | None:intergenic | 25.0% |
| !!! | GATTTTTGAATTTTGATCGA+TGG | + | chr1_2:54242262-54242281 | Msa0077360:exon | 25.0% |
| ! | TGAAGATAGATTAGTGAAAA+GGG | - | chr1_2:54242439-54242458 | None:intergenic | 25.0% |
| ! | TTGAAGATAGATTAGTGAAA+AGG | - | chr1_2:54242440-54242459 | None:intergenic | 25.0% |
| !!! | GATTTTGATTTTGATTTGTG+GGG | + | chr1_2:54242465-54242484 | Msa0077360:intron | 25.0% |
| ! | GTAATTATATTTGTCAGTGT+CGG | + | chr1_2:54242744-54242763 | Msa0077360:intron | 25.0% |
| ! | TGATCCAGATATGTATTTAA+GGG | - | chr1_2:54242900-54242919 | None:intergenic | 25.0% |
| ! | TTGATCCAGATATGTATTTA+AGG | - | chr1_2:54242901-54242920 | None:intergenic | 25.0% |
| ! | GAAAAACAAATACATTGGTA+AGG | - | chr1_2:54243202-54243221 | None:intergenic | 25.0% |
| ! | TCGAAGAAAAACAAATACAT+TGG | - | chr1_2:54243207-54243226 | None:intergenic | 25.0% |
| !! | ATTGATTAGATATTTTCCGA+TGG | - | chr1_2:54243258-54243277 | None:intergenic | 25.0% |
| !! | GTTTCTCGATTTGTTTATTA+TGG | + | chr1_2:54243607-54243626 | Msa0077360:intron | 25.0% |
| ! | TGTTTATTATGGTTATTGCT+TGG | + | chr1_2:54243618-54243637 | Msa0077360:intron | 25.0% |
| !! | TATGTGAAATGGTTTTTGAT+AGG | + | chr1_2:54243747-54243766 | Msa0077360:intron | 25.0% |
| ! | ATTGAATACAACAACAAACT+GGG | - | chr1_2:54243808-54243827 | None:intergenic | 25.0% |
| ! | AATTGAATACAACAACAAAC+TGG | - | chr1_2:54243809-54243828 | None:intergenic | 25.0% |
| ! | AAACATAGCTAGAACTAAAT+TGG | + | chr1_2:54243942-54243961 | Msa0077360:intron | 25.0% |
| ! | AACATAGCTAGAACTAAATT+GGG | + | chr1_2:54243943-54243962 | Msa0077360:intron | 25.0% |
| ! | TCATGAAAATGTCAAATTTC+AGG | - | chr1_2:54244159-54244178 | None:intergenic | 25.0% |
| ! | TGAAATATGCTATACTATCA+AGG | + | chr1_2:54244176-54244195 | Msa0077360:intron | 25.0% |
| !! | AATAAGTTGGCTGTTATTTA+TGG | + | chr1_2:54244298-54244317 | Msa0077360:intron | 25.0% |
| ! | AGTGAGATGAAATTCAAAAA+AGG | - | chr1_2:54244463-54244482 | None:intergenic | 25.0% |
| ! | GTCTTAAACTTGAGTAAATA+TGG | + | chr1_2:54244493-54244512 | Msa0077360:intron | 25.0% |
| ! | CTTAAACTTGAGTAAATATG+GGG | + | chr1_2:54244495-54244514 | Msa0077360:intron | 25.0% |
| !! | GAATCAATATGCCTATTTTA+TGG | + | chr1_2:54244566-54244585 | Msa0077360:intron | 25.0% |
| ! | TGAAACTTAAAGTATGTCAA+TGG | + | chr1_2:54244593-54244612 | Msa0077360:intron | 25.0% |
| ! | GTTAATATCAACTACTGTAA+TGG | + | chr1_2:54244684-54244703 | Msa0077360:intron | 25.0% |
| ! | ATGTGAATAACTGTATGAAT+CGG | - | chr1_2:54244837-54244856 | None:intergenic | 25.0% |
| ! | TTCAAAACTAAATAAAAGGG+AGG | - | chr1_2:54245453-54245472 | None:intergenic | 25.0% |
| !!! | TTAGTTTTGAACATCATAGT+TGG | + | chr1_2:54245462-54245481 | Msa0077360:intron | 25.0% |
| !!! | GTATAAAAGGGTTATTTCTT+TGG | - | chr1_2:54245527-54245546 | None:intergenic | 25.0% |
| !! | AATTGGAGGTTGTTATTATA+GGG | - | chr1_2:54245684-54245703 | None:intergenic | 25.0% |
| !! | TAATTGGAGGTTGTTATTAT+AGG | - | chr1_2:54245685-54245704 | None:intergenic | 25.0% |
| ! | AAAGTTAGTTAGTTAATTGG+AGG | - | chr1_2:54245698-54245717 | None:intergenic | 25.0% |
| ! | TGAATCTCAAATCTATACAA+AGG | + | chr1_2:54245873-54245892 | Msa0077360:CDS | 25.0% |
| !! | ATACAGGTCAAAATTTTCAA+TGG | - | chr1_2:54245940-54245959 | None:intergenic | 25.0% |
| !!! | ATTGAAAATTTTGACCTGTA+TGG | + | chr1_2:54245939-54245958 | Msa0077360:intron | 25.0% |
| ! | TAAAACAACAAGGTAAAATG+AGG | - | chr1_2:54246081-54246100 | None:intergenic | 25.0% |
| !!! | AAAAGCATCATAAAACAACA+AGG | - | chr1_2:54246091-54246110 | None:intergenic | 25.0% |
| !!! | TGTTATTCTGTTTTAGTTTC+TGG | + | chr1_2:54246188-54246207 | Msa0077360:intron | 25.0% |
| !!! | GTTATTCTGTTTTAGTTTCT+GGG | + | chr1_2:54246189-54246208 | Msa0077360:intron | 25.0% |
| !! | AAAAGTGTATTACTAGTTCT+TGG | + | chr1_2:54246367-54246386 | Msa0077360:CDS | 25.0% |
| ! | TTGTACAAATATGAAATCCA+TGG | - | chr1_2:54246508-54246527 | None:intergenic | 25.0% |
| ! | TGTACAAAATTCACTTAAGT+TGG | + | chr1_2:54246521-54246540 | Msa0077360:three_prime_UTR | 25.0% |
| !!! | AACCATTTTTTGACAACTTT+TGG | + | chr1_2:54246709-54246728 | Msa0077360:intron | 25.0% |
| ! | TGCAAATCTAAAAACAATGT+CGG | + | chr1_2:54246892-54246911 | Msa0077360:three_prime_UTR | 25.0% |
| TCAAAATTCAAAAATCTGGG+TGG | - | chr1_2:54242258-54242277 | None:intergenic | 30.0% | |
| !! | TTTGAATTTTGATCGATGGA+AGG | + | chr1_2:54242266-54242285 | Msa0077360:exon | 30.0% |
| !! | TTGAATTTTGATCGATGGAA+GGG | + | chr1_2:54242267-54242286 | Msa0077360:exon | 30.0% |
| !! | CACGAATATTGATTCTTCTT+CGG | - | chr1_2:54242327-54242346 | None:intergenic | 30.0% |
| AGAAGAATCAATATTCGTGA+AGG | + | chr1_2:54242328-54242347 | Msa0077360:CDS | 30.0% | |
| GAAGAATCAATATTCGTGAA+GGG | + | chr1_2:54242329-54242348 | Msa0077360:CDS | 30.0% | |
| AAAAATAACAAACAGTTGGC+AGG | - | chr1_2:54242656-54242675 | None:intergenic | 30.0% | |
| CTGCAGTAAACATATTGTAA+AGG | + | chr1_2:54242826-54242845 | Msa0077360:intron | 30.0% | |
| ATTGTAAAGGCTTATCAAAC+CGG | + | chr1_2:54242839-54242858 | Msa0077360:intron | 30.0% | |
| GATCCAGATATGTATTTAAG+GGG | - | chr1_2:54242899-54242918 | None:intergenic | 30.0% | |
| !!! | ATTGGTAAGGTTTTAAACAG+AGG | - | chr1_2:54243189-54243208 | None:intergenic | 30.0% |
| !! | ATTTGTTTTTCTTCGATGTG+AGG | + | chr1_2:54243211-54243230 | Msa0077360:intron | 30.0% |
| !! | TTTGTTTTTCTTCGATGTGA+GGG | + | chr1_2:54243212-54243231 | Msa0077360:intron | 30.0% |
| TCCTGATTGTAAGAAAACTA+CGG | + | chr1_2:54243460-54243479 | Msa0077360:CDS | 30.0% | |
| AGAAATATTGGACTTTCTCA+TGG | + | chr1_2:54243484-54243503 | Msa0077360:CDS | 30.0% | |
| !! | GGATGATAATGGTAACAAAT+AGG | + | chr1_2:54243655-54243674 | Msa0077360:intron | 30.0% |
| AATGTTTAACGGTGTGAAAT+TGG | + | chr1_2:54243683-54243702 | Msa0077360:intron | 30.0% | |
| ! | ATGGTTTTTGATAGGTGAAA+TGG | + | chr1_2:54243755-54243774 | Msa0077360:intron | 30.0% |
| GGAATGAAACAATGATATAC+AGG | - | chr1_2:54243787-54243806 | None:intergenic | 30.0% | |
| TTCTCTCAAGATTAGAATTG+AGG | - | chr1_2:54243917-54243936 | None:intergenic | 30.0% | |
| GTGTTCAAATTCTACCATTT+AGG | + | chr1_2:54243994-54244013 | Msa0077360:intron | 30.0% | |
| AAGGCATGTGATATACAAAA+TGG | - | chr1_2:54244243-54244262 | None:intergenic | 30.0% | |
| GAAATGAGACACAAATAAGT+TGG | + | chr1_2:54244285-54244304 | Msa0077360:intron | 30.0% | |
| TATCAACAGATCATAACAGT+TGG | + | chr1_2:54244331-54244350 | Msa0077360:intron | 30.0% | |
| !! | GAAGTTGTCTTTTTCATCTT+TGG | - | chr1_2:54244392-54244411 | None:intergenic | 30.0% |
| ATATGGCAATAAGGAACATA+TGG | - | chr1_2:54244531-54244550 | None:intergenic | 30.0% | |
| AACTTAAAGTATGTCAATGG+AGG | + | chr1_2:54244596-54244615 | Msa0077360:intron | 30.0% | |
| ! | GTAGTTGATATTAACGATGT+GGG | - | chr1_2:54244679-54244698 | None:intergenic | 30.0% |
| ! | AGTAGTTGATATTAACGATG+TGG | - | chr1_2:54244680-54244699 | None:intergenic | 30.0% |
| GATTCATACAGTTATTCACA+TGG | + | chr1_2:54244836-54244855 | Msa0077360:intron | 30.0% | |
| ATGTGAATGACTGTATGAAT+CGG | - | chr1_2:54244980-54244999 | None:intergenic | 30.0% | |
| ! | TTTTCAAATCCTGCTTGATT+TGG | + | chr1_2:54245397-54245416 | Msa0077360:intron | 30.0% |
| AAACTAAATAAAAGGGAGGA+GGG | - | chr1_2:54245449-54245468 | None:intergenic | 30.0% | |
| AAAACTAAATAAAAGGGAGG+AGG | - | chr1_2:54245450-54245469 | None:intergenic | 30.0% | |
| !! | TTCTTTGGAATCGAATTCTT+GGG | - | chr1_2:54245512-54245531 | None:intergenic | 30.0% |
| !! | TTTCTTTGGAATCGAATTCT+TGG | - | chr1_2:54245513-54245532 | None:intergenic | 30.0% |
| AGTAGTGACTCTATTATGAA+GGG | - | chr1_2:54245585-54245604 | None:intergenic | 30.0% | |
| TAGTAGTGACTCTATTATGA+AGG | - | chr1_2:54245586-54245605 | None:intergenic | 30.0% | |
| !!! | TGTTTTGGGAGTTAGAATAA+TGG | - | chr1_2:54245745-54245764 | None:intergenic | 30.0% |
| GGAAGAAGTTGTCATAAAAA+CGG | + | chr1_2:54245771-54245790 | Msa0077360:intron | 30.0% | |
| AGGTAAAATGAGGTCAATAT+TGG | - | chr1_2:54246071-54246090 | None:intergenic | 30.0% | |
| !!! | CAAAACTCTCAGTTTTTTCT+GGG | - | chr1_2:54246308-54246327 | None:intergenic | 30.0% |
| !!! | TCAAAACTCTCAGTTTTTTC+TGG | - | chr1_2:54246309-54246328 | None:intergenic | 30.0% |
| ! | GAACTAGTAATACACTTTTG+AGG | - | chr1_2:54246366-54246385 | None:intergenic | 30.0% |
| TAGACTCACATGACAAATTA+GGG | + | chr1_2:54246431-54246450 | Msa0077360:exon | 30.0% | |
| TGATATCTCTGTCTCATAAT+TGG | + | chr1_2:54246562-54246581 | Msa0077360:three_prime_UTR | 30.0% | |
| ! | AAAGTGAAACCATAGTTCTA+GGG | - | chr1_2:54246607-54246626 | None:intergenic | 30.0% |
| AAAAGTGAAACCATAGTTCT+AGG | - | chr1_2:54246608-54246627 | None:intergenic | 30.0% | |
| TATTACCATGCTTGATTGTA+GGG | - | chr1_2:54246664-54246683 | None:intergenic | 30.0% | |
| GTCCAAAAGTTGTCAAAAAA+TGG | - | chr1_2:54246714-54246733 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGATAA+AGG | - | chr1_2:54246781-54246800 | None:intergenic | 30.0% | |
| TTCTCATTGGTCAAAAACAA+TGG | - | chr1_2:54246794-54246813 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCTCACTTCTCAT+TGG | - | chr1_2:54246807-54246826 | None:intergenic | 30.0% |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr1_2:54246832-54246851 | Msa0077360:intron | 30.0% | |
| AATCTAAAAACAATGTCGGT+AGG | + | chr1_2:54246896-54246915 | Msa0077360:three_prime_UTR | 30.0% | |
| !! | TGCCTTTTGATTAGAAGAGT+TGG | + | chr1_2:54242768-54242787 | Msa0077360:intron | 35.0% |
| CACCAACTCTTCTAATCAAA+AGG | - | chr1_2:54242773-54242792 | None:intergenic | 35.0% | |
| GTCATAGAATGTGGTATGAT+TGG | + | chr1_2:54242792-54242811 | Msa0077360:intron | 35.0% | |
| CAACCCCTTAAATACATATC+TGG | + | chr1_2:54242893-54242912 | Msa0077360:intron | 35.0% | |
| TTAAGTAGTGCTTGCGTTAA+TGG | + | chr1_2:54243071-54243090 | Msa0077360:intron | 35.0% | |
| ! | TCAAATATGGTTGATGTGTG+TGG | + | chr1_2:54243112-54243131 | Msa0077360:intron | 35.0% |
| !!! | TTCGATGTGAGGGTTTTTTT+TGG | + | chr1_2:54243222-54243241 | Msa0077360:intron | 35.0% |
| !!! | TCGATGTGAGGGTTTTTTTT+GGG | + | chr1_2:54243223-54243242 | Msa0077360:intron | 35.0% |
| !! | TTTTGGGCTAGATATTCCAT+CGG | + | chr1_2:54243239-54243258 | Msa0077360:intron | 35.0% |
| CACCATTGAATATTCAGTCA+CGG | + | chr1_2:54243327-54243346 | Msa0077360:intron | 35.0% | |
| CATTAATAGCCAGTAGTGAA+AGG | - | chr1_2:54243360-54243379 | None:intergenic | 35.0% | |
| GAAAACTACGGCAGAAATAT+TGG | + | chr1_2:54243472-54243491 | Msa0077360:CDS | 35.0% | |
| TTCTCATGGATGCAAACATA+AGG | + | chr1_2:54243498-54243517 | Msa0077360:CDS | 35.0% | |
| AAACACGAAACATACAAGTG+AGG | - | chr1_2:54243591-54243610 | None:intergenic | 35.0% | |
| GTGTGAAATTGGAGTTCAAA+AGG | + | chr1_2:54243694-54243713 | Msa0077360:intron | 35.0% | |
| TGAAATTGGAGTTCAAAAGG+AGG | + | chr1_2:54243697-54243716 | Msa0077360:intron | 35.0% | |
| AACATAACCTAATGCTAAGC+TGG | + | chr1_2:54244044-54244063 | Msa0077360:intron | 35.0% | |
| ACTATCAAGGATCTACTAAG+TGG | + | chr1_2:54244189-54244208 | Msa0077360:intron | 35.0% | |
| TGTATGAATATGACCAGACA+AGG | - | chr1_2:54244262-54244281 | None:intergenic | 35.0% | |
| ! | ACATTTTGTGGCTTTCTATG+AGG | - | chr1_2:54244418-54244437 | None:intergenic | 35.0% |
| TGTTCCTTATTGCCATATGA+TGG | + | chr1_2:54244533-54244552 | Msa0077360:intron | 35.0% | |
| AGAACCATCATATGGCAATA+AGG | - | chr1_2:54244540-54244559 | None:intergenic | 35.0% | |
| ! | ATGAATCGGCCAATTTTCTT+TGG | - | chr1_2:54244823-54244842 | None:intergenic | 35.0% |
| ! | ATGAATCGGCCAATTTTCTT+TGG | - | chr1_2:54244823-54244842 | None:intergenic | 35.0% |
| GATTCATACAGTCATTCACA+TGG | + | chr1_2:54244979-54244998 | Msa0077360:intron | 35.0% | |
| ! | TTTTCGTATGAACGAGATCA+GGG | + | chr1_2:54245356-54245375 | Msa0077360:intron | 35.0% |
| TATTATGAAGGGTAAACCCT+CGG | - | chr1_2:54245574-54245593 | None:intergenic | 35.0% | |
| TTTATGACAACTTCTTCCTG+TGG | - | chr1_2:54245769-54245788 | None:intergenic | 35.0% | |
| TGAGAGAATAGCCAATGAAA+GGG | + | chr1_2:54245843-54245862 | Msa0077360:CDS | 35.0% | |
| TTCAAATTCCACCCTTTCAT+TGG | - | chr1_2:54245857-54245876 | None:intergenic | 35.0% | |
| ! | TTTTGACCTGTATGGTTTAC+CGG | + | chr1_2:54245947-54245966 | Msa0077360:intron | 35.0% |
| CAGCTGTCAAAACAAGATAA+CGG | + | chr1_2:54246255-54246274 | Msa0077360:CDS | 35.0% | |
| ! | GTGTATTACTAGTTCTTGGA+AGG | + | chr1_2:54246371-54246390 | Msa0077360:CDS | 35.0% |
| CTAGACTCACATGACAAATT+AGG | + | chr1_2:54246430-54246449 | Msa0077360:exon | 35.0% | |
| AGACTCACATGACAAATTAG+GGG | + | chr1_2:54246432-54246451 | Msa0077360:exon | 35.0% | |
| ATGAGACAGAGATATCACAA+GGG | - | chr1_2:54246559-54246578 | None:intergenic | 35.0% | |
| TATGAGACAGAGATATCACA+AGG | - | chr1_2:54246560-54246579 | None:intergenic | 35.0% | |
| TATCTCTGTCTCATAATTGG+TGG | + | chr1_2:54246565-54246584 | Msa0077360:three_prime_UTR | 35.0% | |
| !! | AAGTGAAACCATAGTTCTAG+GGG | - | chr1_2:54246606-54246625 | None:intergenic | 35.0% |
| ATTACCATGCTTGATTGTAG+GGG | - | chr1_2:54246663-54246682 | None:intergenic | 35.0% | |
| GTATTACCATGCTTGATTGT+AGG | - | chr1_2:54246665-54246684 | None:intergenic | 35.0% | |
| ! | CAATATTCGTGAAGGGTACA+TGG | + | chr1_2:54242336-54242355 | Msa0077360:CDS | 40.0% |
| GAATTGTCTGAGCGGTATTT+GGG | + | chr1_2:54242569-54242588 | Msa0077360:CDS | 40.0% | |
| AATTGTCTGAGCGGTATTTG+GGG | + | chr1_2:54242570-54242589 | Msa0077360:CDS | 40.0% | |
| ! | GTTTATGCATTTGCTGATGC+TGG | + | chr1_2:54242611-54242630 | Msa0077360:CDS | 40.0% |
| !! | AGAGTTGGTGTCATAGAATG+TGG | + | chr1_2:54242783-54242802 | Msa0077360:intron | 40.0% |
| TGCTTGAAAGGTCTTCTGTT+TGG | + | chr1_2:54242864-54242883 | Msa0077360:intron | 40.0% | |
| CTACTTAAACCGTGGGTATT+GGG | - | chr1_2:54243059-54243078 | None:intergenic | 40.0% | |
| ACTACTTAAACCGTGGGTAT+TGG | - | chr1_2:54243060-54243079 | None:intergenic | 40.0% | |
| TTAATGGTTGCGGTTACGTT+GGG | + | chr1_2:54243087-54243106 | Msa0077360:intron | 40.0% | |
| CTCCGTGACTGAATATTCAA+TGG | - | chr1_2:54243332-54243351 | None:intergenic | 40.0% | |
| TGAATATTCAGTCACGGAGA+CGG | + | chr1_2:54243333-54243352 | Msa0077360:intron | 40.0% | |
| ! | GCCGTAGTTTTCTTACAATC+AGG | - | chr1_2:54243464-54243483 | None:intergenic | 40.0% |
| TGTCATGCTTGGGATGATAA+TGG | + | chr1_2:54243644-54243663 | Msa0077360:intron | 40.0% | |
| ! | CTTTTGACCAGCTTAGCATT+AGG | - | chr1_2:54244054-54244073 | None:intergenic | 40.0% |
| TGTATATCACATGCCTTGTC+TGG | + | chr1_2:54244246-54244265 | Msa0077360:intron | 40.0% | |
| ATTGCCATATGATGGTTCTC+AGG | + | chr1_2:54244541-54244560 | Msa0077360:intron | 40.0% | |
| !! | AGTATGTCAATGGAGGTGTT+TGG | + | chr1_2:54244603-54244622 | Msa0077360:intron | 40.0% |
| ! | ACACATGGATTGAGATGATG+TGG | + | chr1_2:54244739-54244758 | Msa0077360:intron | 40.0% |
| ! | ATGGATTGAGATGATGTGGA+TGG | + | chr1_2:54244743-54244762 | Msa0077360:intron | 40.0% |
| TGGATTGAGATGATGTGGAT+GGG | + | chr1_2:54244744-54244763 | Msa0077360:intron | 40.0% | |
| ! | AATCGGCCAATTTTCTTTGG+CGG | - | chr1_2:54244820-54244839 | None:intergenic | 40.0% |
| ! | AATCGGCCAATTTTCTTTGG+CGG | - | chr1_2:54244820-54244839 | None:intergenic | 40.0% |
| TCCTTGTGACTAACAGAACA+GGG | + | chr1_2:54245071-54245090 | Msa0077360:intron | 40.0% | |
| !! | CACGCTCTTTTTCATTCACA+TGG | + | chr1_2:54245200-54245219 | Msa0077360:intron | 40.0% |
| ! | CTTTTCGTATGAACGAGATC+AGG | + | chr1_2:54245355-54245374 | Msa0077360:intron | 40.0% |
| CTGACTATTCCAAATCAAGC+AGG | - | chr1_2:54245409-54245428 | None:intergenic | 40.0% | |
| ! | CTTCTTCCTGTGGATGTTTT+GGG | - | chr1_2:54245759-54245778 | None:intergenic | 40.0% |
| ! | ACTTCTTCCTGTGGATGTTT+TGG | - | chr1_2:54245760-54245779 | None:intergenic | 40.0% |
| !! | ATTAGAAGCTGAGAAGTGCT+TGG | + | chr1_2:54245813-54245832 | Msa0077360:CDS | 40.0% |
| GTGAGAGAATAGCCAATGAA+AGG | + | chr1_2:54245842-54245861 | Msa0077360:CDS | 40.0% | |
| ! | TGGCTTTTTACTGTGACACA+GGG | - | chr1_2:54245988-54246007 | None:intergenic | 40.0% |
| ! | ATGGCTTTTTACTGTGACAC+AGG | - | chr1_2:54245989-54246008 | None:intergenic | 40.0% |
| GTGTCACAGTAAAAAGCCAT+TGG | + | chr1_2:54245989-54246008 | Msa0077360:intron | 40.0% | |
| TTCAGCAATCTATCAGGAGT+AGG | - | chr1_2:54246016-54246035 | None:intergenic | 40.0% | |
| AGTTGCTTCAGCAATCTATC+AGG | - | chr1_2:54246022-54246041 | None:intergenic | 40.0% | |
| ! | ACTAGTTCTTGGAAGGATGT+TGG | + | chr1_2:54246378-54246397 | Msa0077360:CDS | 40.0% |
| ! | CAAGTGTTTCGTTTTCACCA+TGG | + | chr1_2:54246488-54246507 | Msa0077360:three_prime_UTR | 40.0% |
| TGAGACAGAGATATCACAAG+GGG | - | chr1_2:54246558-54246577 | None:intergenic | 40.0% | |
| TAAATGCACCCCTAGAACTA+TGG | + | chr1_2:54246595-54246614 | Msa0077360:three_prime_UTR | 40.0% | |
| AATTCCACGTACTCTTCCAC+CGG | - | chr1_2:54242554-54242573 | None:intergenic | 45.0% | |
| AGTACGTGGAATTGTCTGAG+CGG | + | chr1_2:54242561-54242580 | Msa0077360:CDS | 45.0% | |
| GGAATTGTCTGAGCGGTATT+TGG | + | chr1_2:54242568-54242587 | Msa0077360:CDS | 45.0% | |
| ! | TATTTGGGGTTTCGACAACC+TGG | + | chr1_2:54242584-54242603 | Msa0077360:CDS | 45.0% |
| ! | ATTTGGGGTTTCGACAACCT+GGG | + | chr1_2:54242585-54242604 | Msa0077360:CDS | 45.0% |
| GCAAATGCATAAACAGACCC+AGG | - | chr1_2:54242605-54242624 | None:intergenic | 45.0% | |
| ! | ATGCTGGTGATGCTCATAAG+AGG | + | chr1_2:54242627-54242646 | Msa0077360:CDS | 45.0% |
| ! | TGCTGGTGATGCTCATAAGA+GGG | + | chr1_2:54242628-54242647 | Msa0077360:CDS | 45.0% |
| ATCAAACCGGTGTGCTTGAA+AGG | + | chr1_2:54242852-54242871 | Msa0077360:intron | 45.0% | |
| AGAAGACCTTTCAAGCACAC+CGG | - | chr1_2:54242861-54242880 | None:intergenic | 45.0% | |
| TCACTTGAACCCAATACCCA+CGG | + | chr1_2:54243047-54243066 | Msa0077360:intron | 45.0% | |
| GCAAGCACTACTTAAACCGT+GGG | - | chr1_2:54243066-54243085 | None:intergenic | 45.0% | |
| AGTGCTTGCGTTAATGGTTG+CGG | + | chr1_2:54243077-54243096 | Msa0077360:intron | 45.0% | |
| GTTAATGGTTGCGGTTACGT+TGG | + | chr1_2:54243086-54243105 | Msa0077360:intron | 45.0% | |
| TAATGGTTGCGGTTACGTTG+GGG | + | chr1_2:54243088-54243107 | Msa0077360:intron | 45.0% | |
| GTTACGTTGGGGGTCAAATA+TGG | + | chr1_2:54243099-54243118 | Msa0077360:intron | 45.0% | |
| AGGTCTACAACTGCAACATC+AGG | - | chr1_2:54243169-54243188 | None:intergenic | 45.0% | |
| TGTGAATGTTGCAGTTGTCG+TGG | + | chr1_2:54243384-54243403 | Msa0077360:intron | 45.0% | |
| TTGTCGTGGACGTTTGAGAA+GGG | + | chr1_2:54243398-54243417 | Msa0077360:CDS | 45.0% | |
| GAATGACACTGCATTGGAGA+TGG | + | chr1_2:54243423-54243442 | Msa0077360:CDS | 45.0% | |
| TTGCTTGGAGATGTCATGCT+TGG | + | chr1_2:54243633-54243652 | Msa0077360:intron | 45.0% | |
| TGCTTGGAGATGTCATGCTT+GGG | + | chr1_2:54243634-54243653 | Msa0077360:intron | 45.0% | |
| ! | TCTACTAAGTGGCTTGTGAG+CGG | + | chr1_2:54244200-54244219 | Msa0077360:intron | 45.0% |
| TCCACCTGAGAACCATCATA+TGG | - | chr1_2:54244548-54244567 | None:intergenic | 45.0% | |
| AGTGCTCATAGTGCAACACA+TGG | + | chr1_2:54244724-54244743 | Msa0077360:intron | 45.0% | |
| GGTCCTTGTGACTAACAGAA+CGG | + | chr1_2:54244857-54244876 | Msa0077360:intron | 45.0% | |
| GTCCTTGTGACTAACAGAAC+GGG | + | chr1_2:54244858-54244877 | Msa0077360:intron | 45.0% | |
| TCCTTGTGACTAACAGAACG+GGG | + | chr1_2:54244859-54244878 | Msa0077360:intron | 45.0% | |
| GGTCCTTGTGACTAACAGAA+CGG | + | chr1_2:54244857-54244876 | Msa0077360:intron | 45.0% | |
| GTCCTTGTGACTAACAGAAC+GGG | + | chr1_2:54244858-54244877 | Msa0077360:intron | 45.0% | |
| TCCTTGTGACTAACAGAACG+GGG | + | chr1_2:54244859-54244878 | Msa0077360:intron | 45.0% | |
| GTCCTTGTGACTAACAGAAC+AGG | + | chr1_2:54244858-54244877 | Msa0077360:intron | 45.0% | |
| GGTCCTTGTGACTAACAGAA+CGG | + | chr1_2:54244857-54244876 | Msa0077360:intron | 45.0% | |
| GTCCTTGTGACTAACAGAAC+GGG | + | chr1_2:54244858-54244877 | Msa0077360:intron | 45.0% | |
| TCCTTGTGACTAACAGAACG+GGG | + | chr1_2:54244859-54244878 | Msa0077360:intron | 45.0% | |
| AAGAGAAATCGCTCTTCCGA+GGG | + | chr1_2:54245555-54245574 | Msa0077360:intron | 45.0% | |
| CTAACTCCCAAAACATCCAC+AGG | + | chr1_2:54245750-54245769 | Msa0077360:intron | 45.0% | |
| GAGAATAGCCAATGAAAGGG+TGG | + | chr1_2:54245846-54245865 | Msa0077360:CDS | 45.0% | |
| TATGGTTTACCGGCATAGCA+TGG | + | chr1_2:54245957-54245976 | Msa0077360:intron | 45.0% | |
| TCTATCAGGAGTAGGACCAA+TGG | - | chr1_2:54246008-54246027 | None:intergenic | 45.0% | |
| CGGCAACAAATCTCTTCAAG+AGG | + | chr1_2:54246275-54246294 | Msa0077360:CDS | 45.0% | |
| !! | CATGTGAGTCTAGTTCTCCT+TGG | - | chr1_2:54246423-54246442 | None:intergenic | 45.0% |
| ACAACCCCTACAATCAAGCA+TGG | + | chr1_2:54246656-54246675 | Msa0077360:three_prime_UTR | 45.0% | |
| !!! | AAAAAAAAATATGTTTTAAT+TGG | + | chr1_2:54242929-54242948 | Msa0077360:intron | 5.0% |
| !!! | AATTTTAATTTCAAATTTAA+AGG | - | chr1_2:54244127-54244146 | None:intergenic | 5.0% |
| TTCAACCTCTCCATCACCGA+CGG | + | chr1_2:54242371-54242390 | Msa0077360:CDS | 50.0% | |
| TTCACCGCTTGGAACTGCAA+CGG | + | chr1_2:54242395-54242414 | Msa0077360:CDS | 50.0% | |
| AGTACCGTTGCAGTTCCAAG+CGG | - | chr1_2:54242402-54242421 | None:intergenic | 50.0% | |
| CAACGTGTCAGTGTCAGTGT+TGG | - | chr1_2:54242687-54242706 | None:intergenic | 50.0% | |
| CGCAAGCACTACTTAAACCG+TGG | - | chr1_2:54243067-54243086 | None:intergenic | 50.0% | |
| AATGGTTGCGGTTACGTTGG+GGG | + | chr1_2:54243089-54243108 | Msa0077360:intron | 50.0% | |
| TGTCTCTGTGACTGCGATTG+GGG | - | chr1_2:54243138-54243157 | None:intergenic | 50.0% | |
| CTGTCTCTGTGACTGCGATT+GGG | - | chr1_2:54243139-54243158 | None:intergenic | 50.0% | |
| GTTGTCGTGGACGTTTGAGA+AGG | + | chr1_2:54243397-54243416 | Msa0077360:intron | 50.0% | |
| AGGGAGGAATGACACTGCAT+TGG | + | chr1_2:54243417-54243436 | Msa0077360:CDS | 50.0% | |
| ! | CTACTAAGTGGCTTGTGAGC+GGG | + | chr1_2:54244201-54244220 | Msa0077360:intron | 50.0% |
| GCCATATGATGGTTCTCAGG+TGG | + | chr1_2:54244544-54244563 | Msa0077360:intron | 50.0% | |
| GCAGTGCCGCCAAAGAAAAT+TGG | + | chr1_2:54244811-54244830 | Msa0077360:intron | 50.0% | |
| CATGGTCCTTGTGACAAGTG+TGG | + | chr1_2:54244923-54244942 | Msa0077360:intron | 50.0% | |
| AAGGCTCCACACTTGTCACA+AGG | - | chr1_2:54244932-54244951 | None:intergenic | 50.0% | |
| ! | CCAATTTTCTTTGGCGGCAC+TGG | - | chr1_2:54244814-54244833 | None:intergenic | 50.0% |
| CCAGTGCCGCCAAAGAAAAT+TGG | + | chr1_2:54244954-54244973 | Msa0077360:intron | 50.0% | |
| GCCCTGTTCTGTTAGTCACA+AGG | - | chr1_2:54245075-54245094 | None:intergenic | 50.0% | |
| GAAGAGAAATCGCTCTTCCG+AGG | + | chr1_2:54245554-54245573 | Msa0077360:intron | 50.0% | |
| GCTATGCCGGTAAACCATAC+AGG | - | chr1_2:54245956-54245975 | None:intergenic | 50.0% | |
| AGGGTGTAACCATGCTATGC+CGG | - | chr1_2:54245969-54245988 | None:intergenic | 50.0% | |
| CAAGTAAGCGTTCTCGTCCA+AGG | + | chr1_2:54246403-54246422 | Msa0077360:CDS | 50.0% | |
| GAGATATCACAAGGGGCTTG+TGG | - | chr1_2:54246551-54246570 | None:intergenic | 50.0% | |
| !! | TGAAACCGTCGGTGATGGAG+AGG | - | chr1_2:54242379-54242398 | None:intergenic | 55.0% |
| GTTCCAAGCGGTGAAACCGT+CGG | - | chr1_2:54242390-54242409 | None:intergenic | 55.0% | |
| GCTGTCTCTGTGACTGCGAT+TGG | - | chr1_2:54243140-54243159 | None:intergenic | 55.0% | |
| GGAGACGGTCCTTTCACTAC+TGG | + | chr1_2:54243348-54243367 | Msa0077360:intron | 55.0% | |
| TCGTGGACGTTTGAGAAGGG+AGG | + | chr1_2:54243401-54243420 | Msa0077360:CDS | 55.0% | |
| ! | TAAGTGGCTTGTGAGCGGGT+AGG | + | chr1_2:54244205-54244224 | Msa0077360:intron | 55.0% |
| ACTTTCCTGAGCCCAGCACT+TGG | - | chr1_2:54244776-54244795 | None:intergenic | 55.0% | |
| CTTTGGCGGCACTGCAGATT+GGG | - | chr1_2:54244806-54244825 | None:intergenic | 55.0% | |
| TCTTTGGCGGCACTGCAGAT+TGG | - | chr1_2:54244807-54244826 | None:intergenic | 55.0% | |
| GCCCCGTTCTGTTAGTCACA+AGG | - | chr1_2:54244863-54244882 | None:intergenic | 55.0% | |
| !! | TTCTTTGGCGGCACTGGCAA+AGG | - | chr1_2:54244951-54244970 | None:intergenic | 55.0% |
| GCCCCGTTCTGTTAGTCACA+AGG | - | chr1_2:54244863-54244882 | None:intergenic | 55.0% | |
| GCCCCGTTCTGTTAGTCACA+AGG | - | chr1_2:54244863-54244882 | None:intergenic | 55.0% | |
| AGCGGTGAAACCGTCGGTGA+TGG | - | chr1_2:54242384-54242403 | None:intergenic | 60.0% | |
| TCACCGACGGTTTCACCGCT+TGG | + | chr1_2:54242384-54242403 | Msa0077360:CDS | 60.0% | |
| ! | TGAAGCAGCGTGCTGCTCAG+TGG | + | chr1_2:54242522-54242541 | Msa0077360:CDS | 60.0% |
| ! | GAAGCAGCGTGCTGCTCAGT+GGG | + | chr1_2:54242523-54242542 | Msa0077360:CDS | 60.0% |
| ATGGGCCCATGCCAAGTGCT+GGG | + | chr1_2:54244762-54244781 | Msa0077360:intron | 60.0% | |
| CTGAGCCCAGCACTTGGCAT+GGG | - | chr1_2:54244770-54244789 | None:intergenic | 60.0% | |
| TGCTGCTCAGTGGGACCAGC+CGG | + | chr1_2:54242532-54242551 | Msa0077360:CDS | 65.0% | |
| CCACGTACTCTTCCACCGGC+TGG | - | chr1_2:54242550-54242569 | None:intergenic | 65.0% | |
| ! | CCAGCCGGTGGAAGAGTACG+TGG | + | chr1_2:54242547-54242566 | Msa0077360:CDS | 65.0% |
| GATGGGCCCATGCCAAGTGC+TGG | + | chr1_2:54244761-54244780 | Msa0077360:intron | 65.0% | |
| CCTGAGCCCAGCACTTGGCA+TGG | - | chr1_2:54244771-54244790 | None:intergenic | 65.0% | |
| !! | CCATGCCAAGTGCTGGGCTC+AGG | + | chr1_2:54244768-54244787 | Msa0077360:intron | 65.0% |
| GCTGGGCTCAGGAAAGTCCC+CGG | + | chr1_2:54244779-54244798 | Msa0077360:intron | 65.0% | |
| CTGGGCTCAGGAAAGTCCCC+GGG | + | chr1_2:54244780-54244799 | Msa0077360:intron | 65.0% | |
| TGCTCAGTGGGACCAGCCGG+TGG | + | chr1_2:54242535-54242554 | Msa0077360:CDS | 70.0% | |
| GGCACTGCAGATTGGGCCCG+GGG | - | chr1_2:54244799-54244818 | None:intergenic | 70.0% | |
| CGGCACTGCAGATTGGGCCC+GGG | - | chr1_2:54244800-54244819 | None:intergenic | 70.0% | |
| GCGGCACTGCAGATTGGGCC+CGG | - | chr1_2:54244801-54244820 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 54242213 | 54246945 | 54242213 | ID=Msa0077360;Name=Msa0077360 |
| chr1_2 | mRNA | 54242213 | 54246945 | 54242213 | ID=Msa0077360-mRNA-1;Parent=Msa0077360;Name=Msa0077360-mRNA-1;_AED=0.05;_eAED=0.05;_QI=68|1|1|1|0.8|0.66|6|309|256 |
| chr1_2 | exon | 54242213 | 54242416 | 54242213 | ID=Msa0077360-mRNA-1:exon:16724;Parent=Msa0077360-mRNA-1 |
| chr1_2 | exon | 54242507 | 54242649 | 54242507 | ID=Msa0077360-mRNA-1:exon:16725;Parent=Msa0077360-mRNA-1 |
| chr1_2 | exon | 54243398 | 54243526 | 54243398 | ID=Msa0077360-mRNA-1:exon:16726;Parent=Msa0077360-mRNA-1 |
| chr1_2 | exon | 54245772 | 54245894 | 54245772 | ID=Msa0077360-mRNA-1:exon:16727;Parent=Msa0077360-mRNA-1 |
| chr1_2 | exon | 54246204 | 54246688 | 54246204 | ID=Msa0077360-mRNA-1:exon:16728;Parent=Msa0077360-mRNA-1 |
| chr1_2 | exon | 54246882 | 54246945 | 54246882 | ID=Msa0077360-mRNA-1:exon:16729;Parent=Msa0077360-mRNA-1 |
| chr1_2 | five_prime_UTR | 54242213 | 54242280 | 54242213 | ID=Msa0077360-mRNA-1:five_prime_utr;Parent=Msa0077360-mRNA-1 |
| chr1_2 | CDS | 54242281 | 54242416 | 54242281 | ID=Msa0077360-mRNA-1:cds;Parent=Msa0077360-mRNA-1 |
| chr1_2 | CDS | 54242507 | 54242649 | 54242507 | ID=Msa0077360-mRNA-1:cds;Parent=Msa0077360-mRNA-1 |
| chr1_2 | CDS | 54243398 | 54243526 | 54243398 | ID=Msa0077360-mRNA-1:cds;Parent=Msa0077360-mRNA-1 |
| chr1_2 | CDS | 54245772 | 54245894 | 54245772 | ID=Msa0077360-mRNA-1:cds;Parent=Msa0077360-mRNA-1 |
| chr1_2 | CDS | 54246204 | 54246443 | 54246204 | ID=Msa0077360-mRNA-1:cds;Parent=Msa0077360-mRNA-1 |
| chr1_2 | three_prime_UTR | 54246444 | 54246688 | 54246444 | ID=Msa0077360-mRNA-1:three_prime_utr;Parent=Msa0077360-mRNA-1 |
| chr1_2 | three_prime_UTR | 54246882 | 54246945 | 54246882 | ID=Msa0077360-mRNA-1:three_prime_utr;Parent=Msa0077360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
