AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1048160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1048160 MtrunA17_Chr7g0216481 90.299 134 10 1 1 131 1 134 1.49e-79 230
Msa1048160 MtrunA17_Chr5g0415771 55.385 130 54 1 1 130 1 126 7.21e-41 132
Msa1048160 MtrunA17_Chr5g0415761 56.034 116 51 0 15 130 12 127 6.08e-39 127
Msa1048160 MtrunA17_Chr5g0415741 54.701 117 53 0 14 130 9 125 6.45e-39 127
Msa1048160 MtrunA17_Chr1g0155721 48.214 112 58 0 19 130 2 113 1.35e-38 126
Msa1048160 MtrunA17_Chr3g0142051 46.847 111 59 0 19 129 2 112 9.38e-36 119
Msa1048160 MtrunA17_Chr5g0404831 46.018 113 61 0 19 131 4 116 7.90e-35 117
Msa1048160 MtrunA17_Chr8g0393201 42.574 101 58 0 29 129 233 333 9.66e-27 101
Msa1048160 MtrunA17_Chr7g0245141 38.095 105 65 0 22 126 23 127 1.88e-25 93.6
Msa1048160 MtrunA17_Chr8g0334481 35.238 105 68 0 22 126 25 129 1.58e-24 91.3
Msa1048160 MtrunA17_Chr2g0280411 37.143 105 66 0 23 127 9 113 4.52e-24 89.7
Msa1048160 MtrunA17_Chr4g0042051 36.697 109 69 0 18 126 5 113 7.78e-24 89.4
Msa1048160 MtrunA17_Chr2g0319291 35.398 113 73 0 14 126 1 113 2.23e-23 87.8
Msa1048160 MtrunA17_Chr1g0201781 35.955 89 55 2 41 127 74 162 1.20e-18 77.0
Msa1048160 MtrunA17_Chr1g0211871 38.298 94 53 3 35 127 77 166 9.79e-18 75.1
Msa1048160 MtrunA17_Chr3g0125821 36.082 97 55 4 38 129 78 172 1.05e-17 74.7
Msa1048160 MtrunA17_Chr2g0317731 36.145 83 51 2 48 128 89 171 1.23e-16 72.0
Msa1048160 MtrunA17_Chr7g0264661 29.508 122 82 2 8 129 10 127 4.63e-16 69.3
Msa1048160 MtrunA17_Chr7g0249461 35.484 124 69 5 2 122 61 176 1.21e-15 69.7
Msa1048160 MtrunA17_Chr8g0360031 34.343 99 60 4 32 128 79 174 1.36e-15 69.3
Msa1048160 MtrunA17_Chr4g0052481 31.707 82 54 1 49 128 85 166 3.90e-15 67.8
Msa1048160 MtrunA17_Chr4g0044731 36.842 76 47 1 48 122 84 159 2.80e-14 65.9
Msa1048160 MtrunA17_Chr4g0047431 35.000 80 52 0 49 128 25 104 2.55e-12 62.4
Msa1048160 MtrunA17_Chr1g0173181 32.468 77 51 1 43 118 425 501 2.25e-11 59.7
Msa1048160 MtrunA17_Chr3g0142031 56.098 41 18 0 79 119 5 45 3.08e-11 54.7
Msa1048160 MtrunA17_Chr2g0317701 34.667 75 47 2 44 116 61 135 4.79e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1048160 AT5G39950.1 59.398 133 52 1 1 131 1 133 1.10e-56 173
Msa1048160 AT1G45145.1 52.475 101 48 0 29 129 11 111 9.20e-36 119
Msa1048160 AT3G51030.1 46.018 113 61 0 19 131 2 114 2.75e-34 115
Msa1048160 AT1G59730.1 42.748 131 71 2 1 130 1 128 6.75e-34 115
Msa1048160 AT1G19730.1 46.429 112 59 1 19 129 2 113 1.97e-33 113
Msa1048160 AT1G69880.1 51.546 97 47 0 33 129 47 143 3.07e-33 114
Msa1048160 AT5G42980.1 47.059 102 54 0 29 130 11 112 2.54e-31 108
Msa1048160 AT3G17880.2 40.000 105 63 0 25 129 265 369 1.01e-25 99.8
Msa1048160 AT3G17880.1 40.000 105 63 0 25 129 272 376 1.24e-25 99.8
Msa1048160 AT3G08710.2 39.062 128 74 2 1 126 1 126 2.19e-24 91.3
Msa1048160 AT3G08710.3 39.062 128 74 2 1 126 1 126 2.19e-24 91.3
Msa1048160 AT3G08710.1 39.062 128 74 2 1 126 1 126 2.19e-24 91.3
Msa1048160 AT3G56420.1 38.298 94 58 0 33 126 50 143 2.79e-24 91.7
Msa1048160 AT3G56420.2 38.298 94 58 0 33 126 50 143 2.79e-24 91.7
Msa1048160 AT3G56420.3 38.298 94 58 0 33 126 50 143 2.79e-24 91.7
Msa1048160 AT2G40790.2 38.298 94 58 0 33 126 50 143 1.34e-21 84.7
Msa1048160 AT2G40790.1 38.298 94 58 0 33 126 50 143 1.34e-21 84.7
Msa1048160 AT1G11530.1 38.144 97 60 0 30 126 9 105 2.50e-21 82.8
Msa1048160 AT1G43560.1 36.697 109 66 3 12 117 41 149 8.88e-20 80.1
Msa1048160 AT1G76760.1 39.744 78 46 1 41 117 77 154 6.54e-19 78.2
Msa1048160 AT1G50320.1 44.286 70 38 1 43 111 85 154 4.26e-17 73.6
Msa1048160 AT3G02730.1 36.782 87 54 1 46 131 88 174 6.01e-17 73.2
Msa1048160 AT3G15360.1 32.673 101 63 4 30 128 92 189 1.89e-16 72.4
Msa1048160 AT1G03680.1 36.145 83 51 2 48 128 95 177 5.65e-16 70.9
Msa1048160 AT4G03520.1 36.620 71 44 1 48 117 101 171 1.65e-15 69.7
Msa1048160 AT3G53220.1 26.549 113 81 1 17 129 15 125 1.65e-15 68.2
Msa1048160 AT1G31020.1 30.000 110 75 1 21 128 47 156 4.33e-15 67.8
Msa1048160 AT2G35010.2 34.146 82 52 1 49 128 110 191 4.97e-15 68.6
Msa1048160 AT2G35010.1 34.146 82 52 1 49 128 110 191 4.97e-15 68.6
Msa1048160 AT5G16400.1 32.184 87 58 1 46 131 98 184 1.71e-14 67.0
Msa1048160 AT4G04950.1 33.645 107 67 1 22 128 2 104 4.46e-14 67.8
Msa1048160 AT4G32580.1 31.868 91 62 0 38 128 14 104 4.68e-14 65.1
Msa1048160 AT1G52990.1 32.632 95 63 1 36 129 218 312 1.53e-13 65.9
Msa1048160 AT4G26160.1 32.292 96 61 2 38 129 105 200 2.32e-12 62.0
Msa1048160 AT2G41680.1 28.889 90 62 2 43 130 440 529 1.11e-11 61.2

Find 51 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATGTGGCACAAGAGTTTA+AGG 0.257673 7_2:-9722812 Msa1048160:CDS
ATGTAGAAAGTTAAGTTATA+TGG 0.292169 7_2:+9722348 None:intergenic
TGAAACCCTCTGTCCTGTTT+TGG 0.295085 7_2:-9722405 Msa1048160:three_prime_UTR
AAGCAAAATTGATATGTAAT+TGG 0.301166 7_2:-9722500 Msa1048160:three_prime_UTR
GTTGTATAATTTGAATTTGT+TGG 0.301363 7_2:-9722589 Msa1048160:three_prime_UTR
GTTTCCAACGATTGATTCAT+AGG 0.344164 7_2:-9722325 Msa1048160:three_prime_UTR
AATCGATGTTGATGAATTAT+CGG 0.348841 7_2:-9723452 Msa1048160:intron
CTCACCAATATGATGTTCAT+TGG 0.357644 7_2:-9722561 Msa1048160:three_prime_UTR
ATTGTCAATTGCAACTGTTT+TGG 0.366693 7_2:-9722437 Msa1048160:three_prime_UTR
TGTGGTTGACTTTACTTGCT+TGG 0.384738 7_2:+9723851 None:intergenic
AAAGAGGTTGATAAGGTTGT+TGG 0.418770 7_2:-9722751 Msa1048160:CDS
CTATCCAATGAACATCATAT+TGG 0.430880 7_2:+9722557 None:intergenic
GACAAAGAAGACTCCAAAAC+AGG 0.433535 7_2:+9722392 None:intergenic
CTTCTTTGTCACTTGTTTCG+CGG 0.436751 7_2:-9722379 Msa1048160:three_prime_UTR
GCTGTCTTTGTGCTGAATGT+TGG 0.441277 7_2:+9723819 None:intergenic
TTAGCCATGGCTTGAAGAAT+CGG 0.442279 7_2:+9723502 None:intergenic
CGTTTGTGTTGTTGAAGAAT+GGG 0.453169 7_2:-9722774 Msa1048160:CDS
TTGTATAATTTGAATTTGTT+GGG 0.455935 7_2:-9722588 Msa1048160:three_prime_UTR
ACGTTTGTGTTGTTGAAGAA+TGG 0.456074 7_2:-9722775 Msa1048160:CDS
TTCTCCTCCTTAGTCGGCAG+TGG 0.459284 7_2:-9723783 Msa1048160:CDS
TAAGGTTGTTGGAGCAAAGA+AGG 0.462298 7_2:-9722740 Msa1048160:CDS
TACGGGGCCACTGCCGACTA+AGG 0.463959 7_2:+9723776 None:intergenic
TTCAGCACAAAGACAGCAAT+GGG 0.470933 7_2:-9723813 Msa1048160:exon
TGATTGATTTCTCTGCTACA+TGG 0.471205 7_2:-9723549 Msa1048160:CDS
TGATGATTCTGATGACTGTA+CGG 0.487264 7_2:+9723758 None:intergenic
GAATGGGAAAGAGGTTGATA+AGG 0.491854 7_2:-9722758 Msa1048160:CDS
GATGATTCTGATGACTGTAC+GGG 0.500909 7_2:+9723759 None:intergenic
GATTTCTCTGCTACATGGTG+TGG 0.519111 7_2:-9723544 Msa1048160:CDS
GGCACAAGAGTTTAAGGTGC+AGG 0.519916 7_2:-9722806 Msa1048160:CDS
TTGACCTATGAATCAATCGT+TGG 0.520994 7_2:+9722321 None:intergenic
TTATAAAGATACATGTCATA+AGG 0.526271 7_2:-9723882 Msa1048160:five_prime_UTR
ATCAGTGAATTCATTAGCCA+TGG 0.533887 7_2:+9723489 None:intergenic
GTGTGGACCTTGTAAAATGA+TGG 0.541235 7_2:-9723527 Msa1048160:CDS
CCTTCCACTCATCTGCTCGC+TGG 0.549073 7_2:-9723716 Msa1048160:CDS
GTTGTTGAAGAATGGGAAAG+AGG 0.553595 7_2:-9722767 Msa1048160:CDS
AGATGAGTGGAAGGTCTTGA+CGG 0.570930 7_2:+9723725 None:intergenic
ACAACTTTATCATCATCACC+AGG 0.581059 7_2:+9722607 None:intergenic
GAATGTTGGAGTTGTTCTTG+TGG 0.588851 7_2:+9723833 None:intergenic
GGGGCCACTGCCGACTAAGG+AGG 0.594415 7_2:+9723779 None:intergenic
GTTGCCAGCGAGCAGATGAG+TGG 0.605035 7_2:+9723712 None:intergenic
TTCTTCAACAACACAAACGT+TGG 0.610426 7_2:+9722778 None:intergenic
ATTCAGCACAAAGACAGCAA+TGG 0.613497 7_2:-9723814 Msa1048160:exon
AGACTCCAAAACAGGACAGA+GGG 0.617670 7_2:+9722400 None:intergenic
CCAGCGAGCAGATGAGTGGA+AGG 0.627549 7_2:+9723716 None:intergenic
GGAACCGATTCTTCAAGCCA+TGG 0.630372 7_2:-9723506 Msa1048160:CDS
ATGATACTGTGAATGTGATG+TGG 0.634907 7_2:-9722461 Msa1048160:three_prime_UTR
TGAGTATAATCTTATCACCC+TGG 0.659551 7_2:-9722625 Msa1048160:three_prime_UTR
ACTTTGAGCAGATATGATGT+GGG 0.676948 7_2:+9722288 None:intergenic
CAACTTTATCATCATCACCA+GGG 0.698748 7_2:+9722608 None:intergenic
AAGACTCCAAAACAGGACAG+AGG 0.709414 7_2:+9722399 None:intergenic
ATGATTCTGATGACTGTACG+GGG 0.715538 7_2:+9723760 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAATAGAAAAATAAAA+TGG + chr7_2:9722568-9722587 None:intergenic 10.0%
!!! CATTTTATTTTTCTATTTTT+TGG - chr7_2:9722566-9722585 Msa1048160:three_prime_UTR 10.0%
!!! AATTATGTTATTTGTTAAAA+TGG - chr7_2:9722904-9722923 Msa1048160:intron 10.0%
!!! TCATTTTTACAAATTATTAT+CGG - chr7_2:9723261-9723280 Msa1048160:intron 10.0%
!! CAAAAAATAGAAAAATAAAA+TGG + chr7_2:9722568-9722587 None:intergenic 10.0%
!!! CATTTTATTTTTCTATTTTT+TGG - chr7_2:9722566-9722585 Msa1048160:three_prime_UTR 10.0%
!!! AATTATGTTATTTGTTAAAA+TGG - chr7_2:9722904-9722923 Msa1048160:intron 10.0%
!!! TCATTTTTACAAATTATTAT+CGG - chr7_2:9723261-9723280 Msa1048160:intron 10.0%
!!! ATTGTATGTTATTTTTTTGA+GGG - chr7_2:9722877-9722896 Msa1048160:intron 15.0%
!!! AATTATACAAAAAGCATTTA+AGG - chr7_2:9723035-9723054 Msa1048160:intron 15.0%
!!! TGATAATGGTAAATTTTAAA+AGG + chr7_2:9723080-9723099 None:intergenic 15.0%
!!! ATAATGATTTAATTTTTGTG+TGG - chr7_2:9723328-9723347 Msa1048160:intron 15.0%
!!! TTGTATAATTTGAATTTGTT+GGG - chr7_2:9723594-9723613 Msa1048160:intron 15.0%
!!! ATTGTATGTTATTTTTTTGA+GGG - chr7_2:9722877-9722896 Msa1048160:intron 15.0%
!!! AATTATACAAAAAGCATTTA+AGG - chr7_2:9723035-9723054 Msa1048160:intron 15.0%
!!! TGATAATGGTAAATTTTAAA+AGG + chr7_2:9723080-9723099 None:intergenic 15.0%
!!! ATAATGATTTAATTTTTGTG+TGG - chr7_2:9723328-9723347 Msa1048160:intron 15.0%
!!! TTGTATAATTTGAATTTGTT+GGG - chr7_2:9723594-9723613 Msa1048160:intron 15.0%
!!! CATTGTATGTTATTTTTTTG+AGG - chr7_2:9722876-9722895 Msa1048160:intron 20.0%
!!! ATGTTATTTGTTAAAATGGA+TGG - chr7_2:9722908-9722927 Msa1048160:intron 20.0%
!!! AACTAAAAATACATTTTTGC+CGG - chr7_2:9722971-9722990 Msa1048160:intron 20.0%
!!! ATTTTAAAAGGAAAAAGGTT+AGG + chr7_2:9723068-9723087 None:intergenic 20.0%
!!! GGTAAATTTTAAAAGGAAAA+AGG + chr7_2:9723073-9723092 None:intergenic 20.0%
!!! TTAATTTTTGTGTGGTTTTT+TGG - chr7_2:9723336-9723355 Msa1048160:intron 20.0%
!! GTTGTATAATTTGAATTTGT+TGG - chr7_2:9723593-9723612 Msa1048160:intron 20.0%
!! AAGCAAAATTGATATGTAAT+TGG - chr7_2:9723682-9723701 Msa1048160:CDS 20.0%
!! ATGTAGAAAGTTAAGTTATA+TGG + chr7_2:9723837-9723856 None:intergenic 20.0%
!!! CATTGTATGTTATTTTTTTG+AGG - chr7_2:9722876-9722895 Msa1048160:intron 20.0%
!!! ATGTTATTTGTTAAAATGGA+TGG - chr7_2:9722908-9722927 Msa1048160:intron 20.0%
!!! AACTAAAAATACATTTTTGC+CGG - chr7_2:9722971-9722990 Msa1048160:intron 20.0%
!!! ATTTTAAAAGGAAAAAGGTT+AGG + chr7_2:9723068-9723087 None:intergenic 20.0%
!!! GGTAAATTTTAAAAGGAAAA+AGG + chr7_2:9723073-9723092 None:intergenic 20.0%
!!! TTAATTTTTGTGTGGTTTTT+TGG - chr7_2:9723336-9723355 Msa1048160:intron 20.0%
!! GTTGTATAATTTGAATTTGT+TGG - chr7_2:9723593-9723612 Msa1048160:intron 20.0%
!! AAGCAAAATTGATATGTAAT+TGG - chr7_2:9723682-9723701 Msa1048160:CDS 20.0%
!! ATGTAGAAAGTTAAGTTATA+TGG + chr7_2:9723837-9723856 None:intergenic 20.0%
! ATTGAGATCTAAAGAGATAT+GGG + chr7_2:9722537-9722556 None:intergenic 25.0%
! TATTGAGATCTAAAGAGATA+TGG + chr7_2:9722538-9722557 None:intergenic 25.0%
!!! TTTTGATTTTCTGTTTGTGA+AGG - chr7_2:9722607-9722626 Msa1048160:three_prime_UTR 25.0%
!! AATCGATGTTGATGAATTAT+CGG - chr7_2:9722730-9722749 Msa1048160:CDS 25.0%
! ACAGTATAGTTGATCAAATT+GGG + chr7_2:9722769-9722788 None:intergenic 25.0%
! AACAGTATAGTTGATCAAAT+TGG + chr7_2:9722770-9722789 None:intergenic 25.0%
! TTCTCAAAGTTTATTATAGC+CGG + chr7_2:9722993-9723012 None:intergenic 25.0%
!! ACCATATTTTACTTACTTGA+CGG + chr7_2:9723121-9723140 None:intergenic 25.0%
! CAAATAATAACACATCGAAT+CGG + chr7_2:9723160-9723179 None:intergenic 25.0%
! ATTGAGATCTAAAGAGATAT+GGG + chr7_2:9722537-9722556 None:intergenic 25.0%
! TATTGAGATCTAAAGAGATA+TGG + chr7_2:9722538-9722557 None:intergenic 25.0%
!!! TTTTGATTTTCTGTTTGTGA+AGG - chr7_2:9722607-9722626 Msa1048160:three_prime_UTR 25.0%
!! AATCGATGTTGATGAATTAT+CGG - chr7_2:9722730-9722749 Msa1048160:CDS 25.0%
! ACAGTATAGTTGATCAAATT+GGG + chr7_2:9722769-9722788 None:intergenic 25.0%
! AACAGTATAGTTGATCAAAT+TGG + chr7_2:9722770-9722789 None:intergenic 25.0%
! TTCTCAAAGTTTATTATAGC+CGG + chr7_2:9722993-9723012 None:intergenic 25.0%
!! ACCATATTTTACTTACTTGA+CGG + chr7_2:9723121-9723140 None:intergenic 25.0%
! CAAATAATAACACATCGAAT+CGG + chr7_2:9723160-9723179 None:intergenic 25.0%
! TTCTTTAGATGTTTTTCGTG+TGG - chr7_2:9722943-9722962 Msa1048160:intron 30.0%
TTAAAAGGAAAAAGGTTAGG+TGG + chr7_2:9723065-9723084 None:intergenic 30.0%
ACCGTCAAGTAAGTAAAATA+TGG - chr7_2:9723117-9723136 Msa1048160:intron 30.0%
AGAAGCAATAACAACACATA+TGG + chr7_2:9723298-9723317 None:intergenic 30.0%
!! ATTTTTGTGTGGTTTTTTGG+TGG - chr7_2:9723339-9723358 Msa1048160:intron 30.0%
!! TTTTTGTGTGGTTTTTTGGT+GGG - chr7_2:9723340-9723359 Msa1048160:intron 30.0%
GAAGGATGAACTTAAAAACA+AGG - chr7_2:9723460-9723479 Msa1048160:CDS 30.0%
CTATCCAATGAACATCATAT+TGG + chr7_2:9723628-9723647 None:intergenic 30.0%
! ATTGTCAATTGCAACTGTTT+TGG - chr7_2:9723745-9723764 Msa1048160:CDS 30.0%
! TTCTTTAGATGTTTTTCGTG+TGG - chr7_2:9722943-9722962 Msa1048160:intron 30.0%
TTAAAAGGAAAAAGGTTAGG+TGG + chr7_2:9723065-9723084 None:intergenic 30.0%
ACCGTCAAGTAAGTAAAATA+TGG - chr7_2:9723117-9723136 Msa1048160:intron 30.0%
AGAAGCAATAACAACACATA+TGG + chr7_2:9723298-9723317 None:intergenic 30.0%
!! ATTTTTGTGTGGTTTTTTGG+TGG - chr7_2:9723339-9723358 Msa1048160:intron 30.0%
!! TTTTTGTGTGGTTTTTTGGT+GGG - chr7_2:9723340-9723359 Msa1048160:intron 30.0%
GAAGGATGAACTTAAAAACA+AGG - chr7_2:9723460-9723479 Msa1048160:CDS 30.0%
CTATCCAATGAACATCATAT+TGG + chr7_2:9723628-9723647 None:intergenic 30.0%
! ATTGTCAATTGCAACTGTTT+TGG - chr7_2:9723745-9723764 Msa1048160:CDS 30.0%
!! TCATTTTTCTCCTCCTTAGT+CGG - chr7_2:9722393-9722412 Msa1048160:three_prime_UTR 35.0%
TGATGATTCTGATGACTGTA+CGG + chr7_2:9722427-9722446 None:intergenic 35.0%
! TGATTTTCTGTTTGTGAAGG+TGG - chr7_2:9722610-9722629 Msa1048160:three_prime_UTR 35.0%
! TGATTGATTTCTCTGCTACA+TGG - chr7_2:9722633-9722652 Msa1048160:three_prime_UTR 35.0%
!! ATCGGTTCCATCATTTTACA+AGG + chr7_2:9722665-9722684 None:intergenic 35.0%
ATCAGTGAATTCATTAGCCA+TGG + chr7_2:9722696-9722715 None:intergenic 35.0%
!!! AATTTTTAGCACCGACACTT+CGG - chr7_2:9722804-9722823 Msa1048160:CDS 35.0%
!!! GGTTTTTTGGTGGGAATTAT+AGG - chr7_2:9723349-9723368 Msa1048160:intron 35.0%
TTCTTCAACAACACAAACGT+TGG + chr7_2:9723407-9723426 None:intergenic 35.0%
! ACGTTTGTGTTGTTGAAGAA+TGG - chr7_2:9723407-9723426 Msa1048160:intron 35.0%
! CGTTTGTGTTGTTGAAGAAT+GGG - chr7_2:9723408-9723427 Msa1048160:intron 35.0%
!! AAAGAGGTTGATAAGGTTGT+TGG - chr7_2:9723431-9723450 Msa1048160:intron 35.0%
TGAGTATAATCTTATCACCC+TGG - chr7_2:9723557-9723576 Msa1048160:intron 35.0%
CAACTTTATCATCATCACCA+GGG + chr7_2:9723577-9723596 None:intergenic 35.0%
ACAACTTTATCATCATCACC+AGG + chr7_2:9723578-9723597 None:intergenic 35.0%
CTCACCAATATGATGTTCAT+TGG - chr7_2:9723621-9723640 Msa1048160:intron 35.0%
ATGATACTGTGAATGTGATG+TGG - chr7_2:9723721-9723740 Msa1048160:CDS 35.0%
!!! TTGCAACTGTTTTGGAGTTT+AGG - chr7_2:9723753-9723772 Msa1048160:CDS 35.0%
! GTTTCCAACGATTGATTCAT+AGG - chr7_2:9723857-9723876 Msa1048160:five_prime_UTR 35.0%
TTGACCTATGAATCAATCGT+TGG + chr7_2:9723864-9723883 None:intergenic 35.0%
!! TCATTTTTCTCCTCCTTAGT+CGG - chr7_2:9722393-9722412 Msa1048160:three_prime_UTR 35.0%
TGATGATTCTGATGACTGTA+CGG + chr7_2:9722427-9722446 None:intergenic 35.0%
! TGATTTTCTGTTTGTGAAGG+TGG - chr7_2:9722610-9722629 Msa1048160:three_prime_UTR 35.0%
! TGATTGATTTCTCTGCTACA+TGG - chr7_2:9722633-9722652 Msa1048160:three_prime_UTR 35.0%
!! ATCGGTTCCATCATTTTACA+AGG + chr7_2:9722665-9722684 None:intergenic 35.0%
ATCAGTGAATTCATTAGCCA+TGG + chr7_2:9722696-9722715 None:intergenic 35.0%
!!! AATTTTTAGCACCGACACTT+CGG - chr7_2:9722804-9722823 Msa1048160:CDS 35.0%
!!! GGTTTTTTGGTGGGAATTAT+AGG - chr7_2:9723349-9723368 Msa1048160:intron 35.0%
TTCTTCAACAACACAAACGT+TGG + chr7_2:9723407-9723426 None:intergenic 35.0%
! ACGTTTGTGTTGTTGAAGAA+TGG - chr7_2:9723407-9723426 Msa1048160:intron 35.0%
! CGTTTGTGTTGTTGAAGAAT+GGG - chr7_2:9723408-9723427 Msa1048160:intron 35.0%
!! AAAGAGGTTGATAAGGTTGT+TGG - chr7_2:9723431-9723450 Msa1048160:intron 35.0%
TGAGTATAATCTTATCACCC+TGG - chr7_2:9723557-9723576 Msa1048160:intron 35.0%
CAACTTTATCATCATCACCA+GGG + chr7_2:9723577-9723596 None:intergenic 35.0%
ACAACTTTATCATCATCACC+AGG + chr7_2:9723578-9723597 None:intergenic 35.0%
CTCACCAATATGATGTTCAT+TGG - chr7_2:9723621-9723640 Msa1048160:intron 35.0%
ATGATACTGTGAATGTGATG+TGG - chr7_2:9723721-9723740 Msa1048160:CDS 35.0%
!!! TTGCAACTGTTTTGGAGTTT+AGG - chr7_2:9723753-9723772 Msa1048160:CDS 35.0%
! GTTTCCAACGATTGATTCAT+AGG - chr7_2:9723857-9723876 Msa1048160:five_prime_UTR 35.0%
TTGACCTATGAATCAATCGT+TGG + chr7_2:9723864-9723883 None:intergenic 35.0%
! TGTGGTTGACTTTACTTGCT+TGG + chr7_2:9722334-9722353 None:intergenic 40.0%
GAATGTTGGAGTTGTTCTTG+TGG + chr7_2:9722352-9722371 None:intergenic 40.0%
ATTCAGCACAAAGACAGCAA+TGG - chr7_2:9722368-9722387 Msa1048160:three_prime_UTR 40.0%
TTCAGCACAAAGACAGCAAT+GGG - chr7_2:9722369-9722388 Msa1048160:three_prime_UTR 40.0%
ATGATTCTGATGACTGTACG+GGG + chr7_2:9722425-9722444 None:intergenic 40.0%
GATGATTCTGATGACTGTAC+GGG + chr7_2:9722426-9722445 None:intergenic 40.0%
GTGTGGACCTTGTAAAATGA+TGG - chr7_2:9722655-9722674 Msa1048160:three_prime_UTR 40.0%
TTAGCCATGGCTTGAAGAAT+CGG + chr7_2:9722683-9722702 None:intergenic 40.0%
ACACGGACAAGACATGATAA+TGG + chr7_2:9723094-9723113 None:intergenic 40.0%
ACTTACTTGACGGTCTAACA+CGG + chr7_2:9723111-9723130 None:intergenic 40.0%
TTGGTGGGAATTATAGGATG+TGG - chr7_2:9723355-9723374 Msa1048160:intron 40.0%
GTTGTTGAAGAATGGGAAAG+AGG - chr7_2:9723415-9723434 Msa1048160:intron 40.0%
!! GAATGGGAAAGAGGTTGATA+AGG - chr7_2:9723424-9723443 Msa1048160:intron 40.0%
TAAGGTTGTTGGAGCAAAGA+AGG - chr7_2:9723442-9723461 Msa1048160:intron 40.0%
GACAAAGAAGACTCCAAAAC+AGG + chr7_2:9723793-9723812 None:intergenic 40.0%
! CTTCTTTGTCACTTGTTTCG+CGG - chr7_2:9723803-9723822 Msa1048160:exon 40.0%
! TGTGGTTGACTTTACTTGCT+TGG + chr7_2:9722334-9722353 None:intergenic 40.0%
GAATGTTGGAGTTGTTCTTG+TGG + chr7_2:9722352-9722371 None:intergenic 40.0%
ATTCAGCACAAAGACAGCAA+TGG - chr7_2:9722368-9722387 Msa1048160:three_prime_UTR 40.0%
TTCAGCACAAAGACAGCAAT+GGG - chr7_2:9722369-9722388 Msa1048160:three_prime_UTR 40.0%
ATGATTCTGATGACTGTACG+GGG + chr7_2:9722425-9722444 None:intergenic 40.0%
GATGATTCTGATGACTGTAC+GGG + chr7_2:9722426-9722445 None:intergenic 40.0%
GTGTGGACCTTGTAAAATGA+TGG - chr7_2:9722655-9722674 Msa1048160:three_prime_UTR 40.0%
TTAGCCATGGCTTGAAGAAT+CGG + chr7_2:9722683-9722702 None:intergenic 40.0%
ACACGGACAAGACATGATAA+TGG + chr7_2:9723094-9723113 None:intergenic 40.0%
ACTTACTTGACGGTCTAACA+CGG + chr7_2:9723111-9723130 None:intergenic 40.0%
TTGGTGGGAATTATAGGATG+TGG - chr7_2:9723355-9723374 Msa1048160:intron 40.0%
GTTGTTGAAGAATGGGAAAG+AGG - chr7_2:9723415-9723434 Msa1048160:intron 40.0%
!! GAATGGGAAAGAGGTTGATA+AGG - chr7_2:9723424-9723443 Msa1048160:intron 40.0%
TAAGGTTGTTGGAGCAAAGA+AGG - chr7_2:9723442-9723461 Msa1048160:intron 40.0%
GACAAAGAAGACTCCAAAAC+AGG + chr7_2:9723793-9723812 None:intergenic 40.0%
! CTTCTTTGTCACTTGTTTCG+CGG - chr7_2:9723803-9723822 Msa1048160:exon 40.0%
GCTGTCTTTGTGCTGAATGT+TGG + chr7_2:9722366-9722385 None:intergenic 45.0%
AGATGAGTGGAAGGTCTTGA+CGG + chr7_2:9722460-9722479 None:intergenic 45.0%
! GATATGGGTTTTACGAGACG+AGG + chr7_2:9722522-9722541 None:intergenic 45.0%
GATTTCTCTGCTACATGGTG+TGG - chr7_2:9722638-9722657 Msa1048160:three_prime_UTR 45.0%
AAACCCTCTATCCGAAGTGT+CGG + chr7_2:9722818-9722837 None:intergenic 45.0%
GGATGTGGCACAAGAGTTTA+AGG - chr7_2:9723370-9723389 Msa1048160:intron 45.0%
! TGAAACCCTCTGTCCTGTTT+TGG - chr7_2:9723777-9723796 Msa1048160:CDS 45.0%
AGACTCCAAAACAGGACAGA+GGG + chr7_2:9723785-9723804 None:intergenic 45.0%
AAGACTCCAAAACAGGACAG+AGG + chr7_2:9723786-9723805 None:intergenic 45.0%
GCTGTCTTTGTGCTGAATGT+TGG + chr7_2:9722366-9722385 None:intergenic 45.0%
AGATGAGTGGAAGGTCTTGA+CGG + chr7_2:9722460-9722479 None:intergenic 45.0%
! GATATGGGTTTTACGAGACG+AGG + chr7_2:9722522-9722541 None:intergenic 45.0%
GATTTCTCTGCTACATGGTG+TGG - chr7_2:9722638-9722657 Msa1048160:three_prime_UTR 45.0%
AAACCCTCTATCCGAAGTGT+CGG + chr7_2:9722818-9722837 None:intergenic 45.0%
GGATGTGGCACAAGAGTTTA+AGG - chr7_2:9723370-9723389 Msa1048160:intron 45.0%
! TGAAACCCTCTGTCCTGTTT+TGG - chr7_2:9723777-9723796 Msa1048160:CDS 45.0%
AGACTCCAAAACAGGACAGA+GGG + chr7_2:9723785-9723804 None:intergenic 45.0%
AAGACTCCAAAACAGGACAG+AGG + chr7_2:9723786-9723805 None:intergenic 45.0%
! GGAACCGATTCTTCAAGCCA+TGG - chr7_2:9722676-9722695 Msa1048160:three_prime_UTR 50.0%
! GGCACAAGAGTTTAAGGTGC+AGG - chr7_2:9723376-9723395 Msa1048160:intron 50.0%
! GGAACCGATTCTTCAAGCCA+TGG - chr7_2:9722676-9722695 Msa1048160:three_prime_UTR 50.0%
! GGCACAAGAGTTTAAGGTGC+AGG - chr7_2:9723376-9723395 Msa1048160:intron 50.0%
TTCTCCTCCTTAGTCGGCAG+TGG - chr7_2:9722399-9722418 Msa1048160:three_prime_UTR 55.0%
!! AGCACCGACACTTCGGATAG+AGG - chr7_2:9722811-9722830 Msa1048160:CDS 55.0%
! GCACCGACACTTCGGATAGA+GGG - chr7_2:9722812-9722831 Msa1048160:CDS 55.0%
TTCTCCTCCTTAGTCGGCAG+TGG - chr7_2:9722399-9722418 Msa1048160:three_prime_UTR 55.0%
!! AGCACCGACACTTCGGATAG+AGG - chr7_2:9722811-9722830 Msa1048160:CDS 55.0%
! GCACCGACACTTCGGATAGA+GGG - chr7_2:9722812-9722831 Msa1048160:CDS 55.0%
CCAGCGAGCAGATGAGTGGA+AGG + chr7_2:9722469-9722488 None:intergenic 60.0%
CCTTCCACTCATCTGCTCGC+TGG - chr7_2:9722466-9722485 Msa1048160:three_prime_UTR 60.0%
GTTGCCAGCGAGCAGATGAG+TGG + chr7_2:9722473-9722492 None:intergenic 60.0%
CCAGCGAGCAGATGAGTGGA+AGG + chr7_2:9722469-9722488 None:intergenic 60.0%
CCTTCCACTCATCTGCTCGC+TGG - chr7_2:9722466-9722485 Msa1048160:three_prime_UTR 60.0%
GTTGCCAGCGAGCAGATGAG+TGG + chr7_2:9722473-9722492 None:intergenic 60.0%
! TACGGGGCCACTGCCGACTA+AGG + chr7_2:9722409-9722428 None:intergenic 65.0%
! TACGGGGCCACTGCCGACTA+AGG + chr7_2:9722409-9722428 None:intergenic 65.0%
! GGGGCCACTGCCGACTAAGG+AGG + chr7_2:9722406-9722425 None:intergenic 70.0%
! GGGGCCACTGCCGACTAAGG+AGG + chr7_2:9722406-9722425 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 9722303 9723901 9722303 ID=Msa1048160;Name=Msa1048160
chr7_2 mRNA 9722303 9723901 9722303 ID=Msa1048160-mRNA-1;Parent=Msa1048160;Name=Msa1048160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|1|1|1|1|1|3|399|131
chr7_2 exon 9722303 9722833 9722303 ID=Msa1048160-mRNA-1:exon:2530;Parent=Msa1048160-mRNA-1
chr7_2 exon 9723453 9723575 9723453 ID=Msa1048160-mRNA-1:exon:2529;Parent=Msa1048160-mRNA-1
chr7_2 exon 9723677 9723901 9723677 ID=Msa1048160-mRNA-1:exon:2528;Parent=Msa1048160-mRNA-1
chr7_2 five_prime_UTR 9723818 9723901 9723818 ID=Msa1048160-mRNA-1:five_prime_utr;Parent=Msa1048160-mRNA-1
chr7_2 CDS 9723677 9723817 9723677 ID=Msa1048160-mRNA-1:cds;Parent=Msa1048160-mRNA-1
chr7_2 CDS 9723453 9723575 9723453 ID=Msa1048160-mRNA-1:cds;Parent=Msa1048160-mRNA-1
chr7_2 CDS 9722702 9722833 9722702 ID=Msa1048160-mRNA-1:cds;Parent=Msa1048160-mRNA-1
chr7_2 three_prime_UTR 9722303 9722701 9722303 ID=Msa1048160-mRNA-1:three_prime_utr;Parent=Msa1048160-mRNA-1
Gene Sequence

>Msa1048160

ATGGGATCATTTTTCTCCTCCTTAGTCGGCAGTGGCCCCGTACAGTCATCAGAATCATCAGAGAGTTCTTCCGTCAAGACCTTCCACTCATCTGCTCGCTGGCAACTTCACTTCAACGAACTCAAAGATTCTCCTCGTCTCGTGGTGATTGATTTCTCTGCTACATGGTGTGGACCTTGTAAAATGATGGAACCGATTCTTCAAGCCATGGCTAATGAATTCACTGATGTTGAATTCATCAAAATCGATGTTGATGAATTATCGGATGTGGCACAAGAGTTTAAGGTGCAGGCTATGCCAACGTTTGTGTTGTTGAAGAATGGGAAAGAGGTTGATAAGGTTGTTGGAGCAAAGAAGGATGAACTTAAAAACAAGGTTCAAAAGCACAAAGCTTAG

Protein sequence

>Msa1048160

MGSFFSSLVGSGPVQSSESSESSSVKTFHSSARWQLHFNELKDSPRLVVIDFSATWCGPCKMMEPILQAMANEFTDVEFIKIDVDELSDVAQEFKVQAMPTFVLLKNGKEVDKVVGAKKDELKNKVQKHKA*