AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1454570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454570 MtrunA17_Chr7g0216481 90.299 134 10 1 1 131 1 134 1.49e-79 230
Msa1454570 MtrunA17_Chr5g0415771 55.385 130 54 1 1 130 1 126 7.21e-41 132
Msa1454570 MtrunA17_Chr5g0415761 56.034 116 51 0 15 130 12 127 6.08e-39 127
Msa1454570 MtrunA17_Chr5g0415741 54.701 117 53 0 14 130 9 125 6.45e-39 127
Msa1454570 MtrunA17_Chr1g0155721 48.214 112 58 0 19 130 2 113 1.35e-38 126
Msa1454570 MtrunA17_Chr3g0142051 46.847 111 59 0 19 129 2 112 9.38e-36 119
Msa1454570 MtrunA17_Chr5g0404831 46.018 113 61 0 19 131 4 116 7.90e-35 117
Msa1454570 MtrunA17_Chr8g0393201 42.574 101 58 0 29 129 233 333 9.66e-27 101
Msa1454570 MtrunA17_Chr7g0245141 38.095 105 65 0 22 126 23 127 1.88e-25 93.6
Msa1454570 MtrunA17_Chr8g0334481 35.238 105 68 0 22 126 25 129 1.58e-24 91.3
Msa1454570 MtrunA17_Chr2g0280411 37.143 105 66 0 23 127 9 113 4.52e-24 89.7
Msa1454570 MtrunA17_Chr4g0042051 36.697 109 69 0 18 126 5 113 7.78e-24 89.4
Msa1454570 MtrunA17_Chr2g0319291 35.398 113 73 0 14 126 1 113 2.23e-23 87.8
Msa1454570 MtrunA17_Chr1g0201781 35.955 89 55 2 41 127 74 162 1.20e-18 77.0
Msa1454570 MtrunA17_Chr1g0211871 38.298 94 53 3 35 127 77 166 9.79e-18 75.1
Msa1454570 MtrunA17_Chr3g0125821 36.082 97 55 4 38 129 78 172 1.05e-17 74.7
Msa1454570 MtrunA17_Chr2g0317731 36.145 83 51 2 48 128 89 171 1.23e-16 72.0
Msa1454570 MtrunA17_Chr7g0264661 29.508 122 82 2 8 129 10 127 4.63e-16 69.3
Msa1454570 MtrunA17_Chr7g0249461 35.484 124 69 5 2 122 61 176 1.21e-15 69.7
Msa1454570 MtrunA17_Chr8g0360031 34.343 99 60 4 32 128 79 174 1.36e-15 69.3
Msa1454570 MtrunA17_Chr4g0052481 31.707 82 54 1 49 128 85 166 3.90e-15 67.8
Msa1454570 MtrunA17_Chr4g0044731 36.842 76 47 1 48 122 84 159 2.80e-14 65.9
Msa1454570 MtrunA17_Chr4g0047431 35.000 80 52 0 49 128 25 104 2.55e-12 62.4
Msa1454570 MtrunA17_Chr1g0173181 32.468 77 51 1 43 118 425 501 2.25e-11 59.7
Msa1454570 MtrunA17_Chr3g0142031 56.098 41 18 0 79 119 5 45 3.08e-11 54.7
Msa1454570 MtrunA17_Chr2g0317701 34.667 75 47 2 44 116 61 135 4.79e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454570 AT5G39950.1 59.398 133 52 1 1 131 1 133 1.10e-56 173
Msa1454570 AT1G45145.1 52.475 101 48 0 29 129 11 111 9.20e-36 119
Msa1454570 AT3G51030.1 46.018 113 61 0 19 131 2 114 2.75e-34 115
Msa1454570 AT1G59730.1 42.748 131 71 2 1 130 1 128 6.75e-34 115
Msa1454570 AT1G19730.1 46.429 112 59 1 19 129 2 113 1.97e-33 113
Msa1454570 AT1G69880.1 51.546 97 47 0 33 129 47 143 3.07e-33 114
Msa1454570 AT5G42980.1 47.059 102 54 0 29 130 11 112 2.54e-31 108
Msa1454570 AT3G17880.2 40.000 105 63 0 25 129 265 369 1.01e-25 99.8
Msa1454570 AT3G17880.1 40.000 105 63 0 25 129 272 376 1.24e-25 99.8
Msa1454570 AT3G08710.2 39.062 128 74 2 1 126 1 126 2.19e-24 91.3
Msa1454570 AT3G08710.3 39.062 128 74 2 1 126 1 126 2.19e-24 91.3
Msa1454570 AT3G08710.1 39.062 128 74 2 1 126 1 126 2.19e-24 91.3
Msa1454570 AT3G56420.1 38.298 94 58 0 33 126 50 143 2.79e-24 91.7
Msa1454570 AT3G56420.2 38.298 94 58 0 33 126 50 143 2.79e-24 91.7
Msa1454570 AT3G56420.3 38.298 94 58 0 33 126 50 143 2.79e-24 91.7
Msa1454570 AT2G40790.2 38.298 94 58 0 33 126 50 143 1.34e-21 84.7
Msa1454570 AT2G40790.1 38.298 94 58 0 33 126 50 143 1.34e-21 84.7
Msa1454570 AT1G11530.1 38.144 97 60 0 30 126 9 105 2.50e-21 82.8
Msa1454570 AT1G43560.1 36.697 109 66 3 12 117 41 149 8.88e-20 80.1
Msa1454570 AT1G76760.1 39.744 78 46 1 41 117 77 154 6.54e-19 78.2
Msa1454570 AT1G50320.1 44.286 70 38 1 43 111 85 154 4.26e-17 73.6
Msa1454570 AT3G02730.1 36.782 87 54 1 46 131 88 174 6.01e-17 73.2
Msa1454570 AT3G15360.1 32.673 101 63 4 30 128 92 189 1.89e-16 72.4
Msa1454570 AT1G03680.1 36.145 83 51 2 48 128 95 177 5.65e-16 70.9
Msa1454570 AT4G03520.1 36.620 71 44 1 48 117 101 171 1.65e-15 69.7
Msa1454570 AT3G53220.1 26.549 113 81 1 17 129 15 125 1.65e-15 68.2
Msa1454570 AT1G31020.1 30.000 110 75 1 21 128 47 156 4.33e-15 67.8
Msa1454570 AT2G35010.2 34.146 82 52 1 49 128 110 191 4.97e-15 68.6
Msa1454570 AT2G35010.1 34.146 82 52 1 49 128 110 191 4.97e-15 68.6
Msa1454570 AT5G16400.1 32.184 87 58 1 46 131 98 184 1.71e-14 67.0
Msa1454570 AT4G04950.1 33.645 107 67 1 22 128 2 104 4.46e-14 67.8
Msa1454570 AT4G32580.1 31.868 91 62 0 38 128 14 104 4.68e-14 65.1
Msa1454570 AT1G52990.1 32.632 95 63 1 36 129 218 312 1.53e-13 65.9
Msa1454570 AT4G26160.1 32.292 96 61 2 38 129 105 200 2.32e-12 62.0
Msa1454570 AT2G41680.1 28.889 90 62 2 43 130 440 529 1.11e-11 61.2

Find 50 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGCAAAATTGATGTATT+TGG 0.184205 tig0035265:+7699 Msa1454570:three_prime_UTR
GGATGTGGCACAAGAGTTTA+AGG 0.257673 tig0035265:+7390 Msa1454570:intron
ATGTAGAAAGTTAAGTTATA+TGG 0.292169 tig0035265:-7851 None:intergenic
TGAAACCCTCTGTCCTGTTT+TGG 0.295085 tig0035265:+7794 Msa1454570:three_prime_UTR
GTTGTATAATTTGAATTTGT+TGG 0.301363 tig0035265:+7612 Msa1454570:three_prime_UTR
GTTTCCAACAATTGATTCAT+AGG 0.346322 tig0035265:+7874 Msa1454570:three_prime_UTR
AATCGATGTTGATGAATTAT+CGG 0.348841 tig0035265:+6753 Msa1454570:CDS
CTCACCAATATGATGTTCAT+TGG 0.357644 tig0035265:+7640 Msa1454570:three_prime_UTR
ATTGTCAATTGCAACTGTTT+TGG 0.366693 tig0035265:+7762 Msa1454570:three_prime_UTR
TTGACCTATGAATCAATTGT+TGG 0.382534 tig0035265:-7878 None:intergenic
TGTGGTTGACTTTACTTGCT+TGG 0.384738 tig0035265:-6355 None:intergenic
AAAGAGGTTGATAAGGTTGT+TGG 0.418770 tig0035265:+7451 Msa1454570:CDS
CTATCCAATGAACATCATAT+TGG 0.430880 tig0035265:-7644 None:intergenic
GACAAAGAAGACTCCAAAAC+AGG 0.433535 tig0035265:-7807 None:intergenic
CTTCTTTGTCACTTGTTTCG+CGG 0.436751 tig0035265:+7820 Msa1454570:three_prime_UTR
GCTGTCTTTGTGCTGAATGT+TGG 0.441277 tig0035265:-6387 None:intergenic
TTAGCCATGGCTTGAAGAAT+CGG 0.442279 tig0035265:-6703 None:intergenic
CGTTTGTGTTGTTGAAGAAT+GGG 0.453169 tig0035265:+7428 Msa1454570:CDS
TTGTATAATTTGAATTTGTT+GGG 0.455935 tig0035265:+7613 Msa1454570:three_prime_UTR
ACGTTTGTGTTGTTGAAGAA+TGG 0.456074 tig0035265:+7427 Msa1454570:CDS
TTCTCCTCCTTAGTCGGCAG+TGG 0.459284 tig0035265:+6423 Msa1454570:CDS
TAAGGTTGTTGGAGCAAAGA+AGG 0.462298 tig0035265:+7462 Msa1454570:CDS
TACGGGGCCACTGCCGACTA+AGG 0.463959 tig0035265:-6430 None:intergenic
TTCAGCACAAAGACAGCAAT+GGG 0.470933 tig0035265:+6393 Msa1454570:exon
TGATTGATTTCTCTGCTACA+TGG 0.471205 tig0035265:+6656 Msa1454570:CDS
TGATGATTCTGATGACTGTA+CGG 0.487264 tig0035265:-6448 None:intergenic
GAATGGGAAAGAGGTTGATA+AGG 0.491854 tig0035265:+7444 Msa1454570:CDS
GATGATTCTGATGACTGTAC+GGG 0.500909 tig0035265:-6447 None:intergenic
TTATAAAGATACATGTCATA+AGG 0.517803 tig0035265:+6324 None:intergenic
GATTTCTCTGCTACATGGTG+TGG 0.519111 tig0035265:+6661 Msa1454570:CDS
GGCACAAGAGTTTAAGGTGC+AGG 0.519916 tig0035265:+7396 Msa1454570:CDS
ATCAGTGAATTCATTAGCCA+TGG 0.533887 tig0035265:-6716 None:intergenic
GTGTGGACCTTGTAAAATGA+TGG 0.541235 tig0035265:+6678 Msa1454570:CDS
CCTTCCACTCATCTGCTCGC+TGG 0.549073 tig0035265:+6490 Msa1454570:CDS
GTTGTTGAAGAATGGGAAAG+AGG 0.553595 tig0035265:+7435 Msa1454570:CDS
AGATGAGTGGAAGGTCTTGA+CGG 0.570930 tig0035265:-6481 None:intergenic
GAATGTTGGAGTTGTTCTTG+TGG 0.588851 tig0035265:-6373 None:intergenic
GGGGCCACTGCCGACTAAGG+AGG 0.594415 tig0035265:-6427 None:intergenic
GTTGCCAGCGAGCAGATGAG+TGG 0.605035 tig0035265:-6494 None:intergenic
TTCTTCAACAACACAAACGT+TGG 0.610426 tig0035265:-7424 None:intergenic
ATTCAGCACAAAGACAGCAA+TGG 0.613497 tig0035265:+6392 Msa1454570:exon
AGACTCCAAAACAGGACAGA+GGG 0.617670 tig0035265:-7799 None:intergenic
CCAGCGAGCAGATGAGTGGA+AGG 0.627549 tig0035265:-6490 None:intergenic
GGAACCGATTCTTCAAGCCA+TGG 0.630372 tig0035265:+6699 Msa1454570:CDS
ATGATACTGTGAATGTGATG+TGG 0.634907 tig0035265:+7738 Msa1454570:three_prime_UTR
TGAGTATAATCTTATCACCA+TGG 0.657251 tig0035265:+7576 Msa1454570:three_prime_UTR
ACTTTGAGCAGATATGATGT+GGG 0.676948 tig0035265:-7911 None:intergenic
CAACTTTATCATCATCACCA+TGG 0.681834 tig0035265:-7593 None:intergenic
AAGACTCCAAAACAGGACAG+AGG 0.709414 tig0035265:-7800 None:intergenic
ATGATTCTGATGACTGTACG+GGG 0.715538 tig0035265:-6446 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATGTTATTTGTTAAAA+TGG + tig0035265:6927-6946 Msa1454570:intron 10.0%
!!! TTTTCTCAAATTTATTATAA+CGG - tig0035265:7016-7035 None:intergenic 10.0%
!!! TCATTTTTACAAATTATTAT+CGG + tig0035265:7281-7300 Msa1454570:intron 10.0%
!!! AATTATGTTATTTGTTAAAA+TGG + tig0035265:6927-6946 Msa1454570:intron 10.0%
!!! TTTTCTCAAATTTATTATAA+CGG - tig0035265:7016-7035 None:intergenic 10.0%
!!! TCATTTTTACAAATTATTAT+CGG + tig0035265:7281-7300 Msa1454570:intron 10.0%
!! CCAAAAAATAGAAAAATAAA+TGG - tig0035265:6592-6611 None:intergenic 15.0%
!!! CCATTTATTTTTCTATTTTT+TGG + tig0035265:6589-6608 Msa1454570:intron 15.0%
!!! ATTGTATGTTATTTTTTTGA+GGG + tig0035265:6900-6919 Msa1454570:intron 15.0%
!!! AATTATACAAAAAGCATTTA+AGG + tig0035265:7056-7075 Msa1454570:intron 15.0%
!!! ATAATGTTTTAATTTTTGTG+TGG + tig0035265:7348-7367 Msa1454570:intron 15.0%
!!! TTGTATAATTTGAATTTGTT+GGG + tig0035265:7613-7632 Msa1454570:three_prime_UTR 15.0%
!! CCAAAAAATAGAAAAATAAA+TGG - tig0035265:6592-6611 None:intergenic 15.0%
!!! CCATTTATTTTTCTATTTTT+TGG + tig0035265:6589-6608 Msa1454570:intron 15.0%
!!! ATTGTATGTTATTTTTTTGA+GGG + tig0035265:6900-6919 Msa1454570:intron 15.0%
!!! AATTATACAAAAAGCATTTA+AGG + tig0035265:7056-7075 Msa1454570:intron 15.0%
!!! ATAATGTTTTAATTTTTGTG+TGG + tig0035265:7348-7367 Msa1454570:intron 15.0%
!!! TTGTATAATTTGAATTTGTT+GGG + tig0035265:7613-7632 Msa1454570:three_prime_UTR 15.0%
!!! CATTGTATGTTATTTTTTTG+AGG + tig0035265:6899-6918 Msa1454570:intron 20.0%
!!! ATGTTATTTGTTAAAATGGA+TGG + tig0035265:6931-6950 Msa1454570:intron 20.0%
!!! TTAATTTTTGTGTGGTTTTT+TGG + tig0035265:7356-7375 Msa1454570:intron 20.0%
!! GTTGTATAATTTGAATTTGT+TGG + tig0035265:7612-7631 Msa1454570:three_prime_UTR 20.0%
!! ATGTAGAAAGTTAAGTTATA+TGG - tig0035265:7854-7873 None:intergenic 20.0%
!!! CATTGTATGTTATTTTTTTG+AGG + tig0035265:6899-6918 Msa1454570:intron 20.0%
!!! ATGTTATTTGTTAAAATGGA+TGG + tig0035265:6931-6950 Msa1454570:intron 20.0%
!!! TTAATTTTTGTGTGGTTTTT+TGG + tig0035265:7356-7375 Msa1454570:intron 20.0%
!! GTTGTATAATTTGAATTTGT+TGG + tig0035265:7612-7631 Msa1454570:three_prime_UTR 20.0%
!! ATGTAGAAAGTTAAGTTATA+TGG - tig0035265:7854-7873 None:intergenic 20.0%
! ATTGAGATCTAAAGAGATAT+GGG - tig0035265:6561-6580 None:intergenic 25.0%
! TATTGAGATCTAAAGAGATA+TGG - tig0035265:6562-6581 None:intergenic 25.0%
!!! TTTTGATTTTCTGTTTGTGA+AGG + tig0035265:6630-6649 Msa1454570:intron 25.0%
!! AATCGATGTTGATGAATTAT+CGG + tig0035265:6753-6772 Msa1454570:CDS 25.0%
! ACAGTATAGTTGATCAAATT+GGG - tig0035265:6792-6811 None:intergenic 25.0%
! AACAGTATAGTTGATCAAAT+TGG - tig0035265:6793-6812 None:intergenic 25.0%
!! ACCATATTTTACTTACTTGA+CGG - tig0035265:7141-7160 None:intergenic 25.0%
! AGAAGCAAAATTGATGTATT+TGG + tig0035265:7699-7718 Msa1454570:three_prime_UTR 25.0%
! ATTGAGATCTAAAGAGATAT+GGG - tig0035265:6561-6580 None:intergenic 25.0%
! TATTGAGATCTAAAGAGATA+TGG - tig0035265:6562-6581 None:intergenic 25.0%
!!! TTTTGATTTTCTGTTTGTGA+AGG + tig0035265:6630-6649 Msa1454570:intron 25.0%
!! AATCGATGTTGATGAATTAT+CGG + tig0035265:6753-6772 Msa1454570:CDS 25.0%
! ACAGTATAGTTGATCAAATT+GGG - tig0035265:6792-6811 None:intergenic 25.0%
! AACAGTATAGTTGATCAAAT+TGG - tig0035265:6793-6812 None:intergenic 25.0%
!! ACCATATTTTACTTACTTGA+CGG - tig0035265:7141-7160 None:intergenic 25.0%
! AGAAGCAAAATTGATGTATT+TGG + tig0035265:7699-7718 Msa1454570:three_prime_UTR 25.0%
! TTCTTTAGATGTTTTTCGTG+TGG + tig0035265:6966-6985 Msa1454570:intron 30.0%
ACCGTCAAGTAAGTAAAATA+TGG + tig0035265:7137-7156 Msa1454570:intron 30.0%
! TGGTCAAAAATTGATTCACT+CGG + tig0035265:7157-7176 Msa1454570:intron 30.0%
!! ATTTTTGTGTGGTTTTTTGG+TGG + tig0035265:7359-7378 Msa1454570:intron 30.0%
!! TTTTTGTGTGGTTTTTTGGT+GGG + tig0035265:7360-7379 Msa1454570:intron 30.0%
GAAGGATGAACTTAAAAACA+AGG + tig0035265:7480-7499 Msa1454570:CDS 30.0%
TGAGTATAATCTTATCACCA+TGG + tig0035265:7576-7595 Msa1454570:three_prime_UTR 30.0%
CTATCCAATGAACATCATAT+TGG - tig0035265:7647-7666 None:intergenic 30.0%
! ATTGTCAATTGCAACTGTTT+TGG + tig0035265:7762-7781 Msa1454570:three_prime_UTR 30.0%
! GTTTCCAACAATTGATTCAT+AGG + tig0035265:7874-7893 Msa1454570:three_prime_UTR 30.0%
TTGACCTATGAATCAATTGT+TGG - tig0035265:7881-7900 None:intergenic 30.0%
! TTCTTTAGATGTTTTTCGTG+TGG + tig0035265:6966-6985 Msa1454570:intron 30.0%
ACCGTCAAGTAAGTAAAATA+TGG + tig0035265:7137-7156 Msa1454570:intron 30.0%
! TGGTCAAAAATTGATTCACT+CGG + tig0035265:7157-7176 Msa1454570:intron 30.0%
!! ATTTTTGTGTGGTTTTTTGG+TGG + tig0035265:7359-7378 Msa1454570:intron 30.0%
!! TTTTTGTGTGGTTTTTTGGT+GGG + tig0035265:7360-7379 Msa1454570:intron 30.0%
GAAGGATGAACTTAAAAACA+AGG + tig0035265:7480-7499 Msa1454570:CDS 30.0%
TGAGTATAATCTTATCACCA+TGG + tig0035265:7576-7595 Msa1454570:three_prime_UTR 30.0%
CTATCCAATGAACATCATAT+TGG - tig0035265:7647-7666 None:intergenic 30.0%
! ATTGTCAATTGCAACTGTTT+TGG + tig0035265:7762-7781 Msa1454570:three_prime_UTR 30.0%
! GTTTCCAACAATTGATTCAT+AGG + tig0035265:7874-7893 Msa1454570:three_prime_UTR 30.0%
TTGACCTATGAATCAATTGT+TGG - tig0035265:7881-7900 None:intergenic 30.0%
!! TCATTTTTCTCCTCCTTAGT+CGG + tig0035265:6417-6436 Msa1454570:CDS 35.0%
TGATGATTCTGATGACTGTA+CGG - tig0035265:6451-6470 None:intergenic 35.0%
! TGATTTTCTGTTTGTGAAGG+TGG + tig0035265:6633-6652 Msa1454570:intron 35.0%
! TGATTGATTTCTCTGCTACA+TGG + tig0035265:6656-6675 Msa1454570:CDS 35.0%
!! ATCGGTTCCATCATTTTACA+AGG - tig0035265:6688-6707 None:intergenic 35.0%
ATCAGTGAATTCATTAGCCA+TGG - tig0035265:6719-6738 None:intergenic 35.0%
!!! AATTTTTAGCACCGACACTT+CGG + tig0035265:6827-6846 Msa1454570:intron 35.0%
!!! GGTTTTTTGGTGGGAATTAT+AGG + tig0035265:7369-7388 Msa1454570:intron 35.0%
TTCTTCAACAACACAAACGT+TGG - tig0035265:7427-7446 None:intergenic 35.0%
! ACGTTTGTGTTGTTGAAGAA+TGG + tig0035265:7427-7446 Msa1454570:CDS 35.0%
! CGTTTGTGTTGTTGAAGAAT+GGG + tig0035265:7428-7447 Msa1454570:CDS 35.0%
!! AAAGAGGTTGATAAGGTTGT+TGG + tig0035265:7451-7470 Msa1454570:CDS 35.0%
CAACTTTATCATCATCACCA+TGG - tig0035265:7596-7615 None:intergenic 35.0%
CTCACCAATATGATGTTCAT+TGG + tig0035265:7640-7659 Msa1454570:three_prime_UTR 35.0%
ATGATACTGTGAATGTGATG+TGG + tig0035265:7738-7757 Msa1454570:three_prime_UTR 35.0%
!!! TTGCAACTGTTTTGGAGTTT+AGG + tig0035265:7770-7789 Msa1454570:three_prime_UTR 35.0%
!! TCATTTTTCTCCTCCTTAGT+CGG + tig0035265:6417-6436 Msa1454570:CDS 35.0%
TGATGATTCTGATGACTGTA+CGG - tig0035265:6451-6470 None:intergenic 35.0%
! TGATTTTCTGTTTGTGAAGG+TGG + tig0035265:6633-6652 Msa1454570:intron 35.0%
! TGATTGATTTCTCTGCTACA+TGG + tig0035265:6656-6675 Msa1454570:CDS 35.0%
!! ATCGGTTCCATCATTTTACA+AGG - tig0035265:6688-6707 None:intergenic 35.0%
ATCAGTGAATTCATTAGCCA+TGG - tig0035265:6719-6738 None:intergenic 35.0%
!!! AATTTTTAGCACCGACACTT+CGG + tig0035265:6827-6846 Msa1454570:intron 35.0%
!!! GGTTTTTTGGTGGGAATTAT+AGG + tig0035265:7369-7388 Msa1454570:intron 35.0%
TTCTTCAACAACACAAACGT+TGG - tig0035265:7427-7446 None:intergenic 35.0%
! ACGTTTGTGTTGTTGAAGAA+TGG + tig0035265:7427-7446 Msa1454570:CDS 35.0%
! CGTTTGTGTTGTTGAAGAAT+GGG + tig0035265:7428-7447 Msa1454570:CDS 35.0%
!! AAAGAGGTTGATAAGGTTGT+TGG + tig0035265:7451-7470 Msa1454570:CDS 35.0%
CAACTTTATCATCATCACCA+TGG - tig0035265:7596-7615 None:intergenic 35.0%
CTCACCAATATGATGTTCAT+TGG + tig0035265:7640-7659 Msa1454570:three_prime_UTR 35.0%
ATGATACTGTGAATGTGATG+TGG + tig0035265:7738-7757 Msa1454570:three_prime_UTR 35.0%
!!! TTGCAACTGTTTTGGAGTTT+AGG + tig0035265:7770-7789 Msa1454570:three_prime_UTR 35.0%
! TGTGGTTGACTTTACTTGCT+TGG - tig0035265:6358-6377 None:intergenic 40.0%
GAATGTTGGAGTTGTTCTTG+TGG - tig0035265:6376-6395 None:intergenic 40.0%
ATTCAGCACAAAGACAGCAA+TGG + tig0035265:6392-6411 Msa1454570:exon 40.0%
TTCAGCACAAAGACAGCAAT+GGG + tig0035265:6393-6412 Msa1454570:exon 40.0%
ATGATTCTGATGACTGTACG+GGG - tig0035265:6449-6468 None:intergenic 40.0%
GATGATTCTGATGACTGTAC+GGG - tig0035265:6450-6469 None:intergenic 40.0%
GTGTGGACCTTGTAAAATGA+TGG + tig0035265:6678-6697 Msa1454570:CDS 40.0%
TTAGCCATGGCTTGAAGAAT+CGG - tig0035265:6706-6725 None:intergenic 40.0%
TTGGTGGGAATTATAGGATG+TGG + tig0035265:7375-7394 Msa1454570:intron 40.0%
GTTGTTGAAGAATGGGAAAG+AGG + tig0035265:7435-7454 Msa1454570:CDS 40.0%
!! GAATGGGAAAGAGGTTGATA+AGG + tig0035265:7444-7463 Msa1454570:CDS 40.0%
TAAGGTTGTTGGAGCAAAGA+AGG + tig0035265:7462-7481 Msa1454570:CDS 40.0%
GACAAAGAAGACTCCAAAAC+AGG - tig0035265:7810-7829 None:intergenic 40.0%
! CTTCTTTGTCACTTGTTTCG+CGG + tig0035265:7820-7839 Msa1454570:three_prime_UTR 40.0%
! TGTGGTTGACTTTACTTGCT+TGG - tig0035265:6358-6377 None:intergenic 40.0%
GAATGTTGGAGTTGTTCTTG+TGG - tig0035265:6376-6395 None:intergenic 40.0%
ATTCAGCACAAAGACAGCAA+TGG + tig0035265:6392-6411 Msa1454570:exon 40.0%
TTCAGCACAAAGACAGCAAT+GGG + tig0035265:6393-6412 Msa1454570:exon 40.0%
ATGATTCTGATGACTGTACG+GGG - tig0035265:6449-6468 None:intergenic 40.0%
GATGATTCTGATGACTGTAC+GGG - tig0035265:6450-6469 None:intergenic 40.0%
GTGTGGACCTTGTAAAATGA+TGG + tig0035265:6678-6697 Msa1454570:CDS 40.0%
TTAGCCATGGCTTGAAGAAT+CGG - tig0035265:6706-6725 None:intergenic 40.0%
TTGGTGGGAATTATAGGATG+TGG + tig0035265:7375-7394 Msa1454570:intron 40.0%
GTTGTTGAAGAATGGGAAAG+AGG + tig0035265:7435-7454 Msa1454570:CDS 40.0%
!! GAATGGGAAAGAGGTTGATA+AGG + tig0035265:7444-7463 Msa1454570:CDS 40.0%
TAAGGTTGTTGGAGCAAAGA+AGG + tig0035265:7462-7481 Msa1454570:CDS 40.0%
GACAAAGAAGACTCCAAAAC+AGG - tig0035265:7810-7829 None:intergenic 40.0%
! CTTCTTTGTCACTTGTTTCG+CGG + tig0035265:7820-7839 Msa1454570:three_prime_UTR 40.0%
GCTGTCTTTGTGCTGAATGT+TGG - tig0035265:6390-6409 None:intergenic 45.0%
AGATGAGTGGAAGGTCTTGA+CGG - tig0035265:6484-6503 None:intergenic 45.0%
! GATATGGGTTTTACGAGACG+AGG - tig0035265:6546-6565 None:intergenic 45.0%
GATTTCTCTGCTACATGGTG+TGG + tig0035265:6661-6680 Msa1454570:CDS 45.0%
AAACCCTCTATCCGAAGTGT+CGG - tig0035265:6841-6860 None:intergenic 45.0%
GGATGTGGCACAAGAGTTTA+AGG + tig0035265:7390-7409 Msa1454570:intron 45.0%
! TGAAACCCTCTGTCCTGTTT+TGG + tig0035265:7794-7813 Msa1454570:three_prime_UTR 45.0%
AGACTCCAAAACAGGACAGA+GGG - tig0035265:7802-7821 None:intergenic 45.0%
AAGACTCCAAAACAGGACAG+AGG - tig0035265:7803-7822 None:intergenic 45.0%
GCTGTCTTTGTGCTGAATGT+TGG - tig0035265:6390-6409 None:intergenic 45.0%
AGATGAGTGGAAGGTCTTGA+CGG - tig0035265:6484-6503 None:intergenic 45.0%
! GATATGGGTTTTACGAGACG+AGG - tig0035265:6546-6565 None:intergenic 45.0%
GATTTCTCTGCTACATGGTG+TGG + tig0035265:6661-6680 Msa1454570:CDS 45.0%
AAACCCTCTATCCGAAGTGT+CGG - tig0035265:6841-6860 None:intergenic 45.0%
GGATGTGGCACAAGAGTTTA+AGG + tig0035265:7390-7409 Msa1454570:intron 45.0%
! TGAAACCCTCTGTCCTGTTT+TGG + tig0035265:7794-7813 Msa1454570:three_prime_UTR 45.0%
AGACTCCAAAACAGGACAGA+GGG - tig0035265:7802-7821 None:intergenic 45.0%
AAGACTCCAAAACAGGACAG+AGG - tig0035265:7803-7822 None:intergenic 45.0%
! GGAACCGATTCTTCAAGCCA+TGG + tig0035265:6699-6718 Msa1454570:CDS 50.0%
! GGCACAAGAGTTTAAGGTGC+AGG + tig0035265:7396-7415 Msa1454570:CDS 50.0%
! GGAACCGATTCTTCAAGCCA+TGG + tig0035265:6699-6718 Msa1454570:CDS 50.0%
! GGCACAAGAGTTTAAGGTGC+AGG + tig0035265:7396-7415 Msa1454570:CDS 50.0%
TTCTCCTCCTTAGTCGGCAG+TGG + tig0035265:6423-6442 Msa1454570:CDS 55.0%
!! AGCACCGACACTTCGGATAG+AGG + tig0035265:6834-6853 Msa1454570:intron 55.0%
! GCACCGACACTTCGGATAGA+GGG + tig0035265:6835-6854 Msa1454570:intron 55.0%
TTCTCCTCCTTAGTCGGCAG+TGG + tig0035265:6423-6442 Msa1454570:CDS 55.0%
!! AGCACCGACACTTCGGATAG+AGG + tig0035265:6834-6853 Msa1454570:intron 55.0%
! GCACCGACACTTCGGATAGA+GGG + tig0035265:6835-6854 Msa1454570:intron 55.0%
CCAGCGAGCAGATGAGTGGA+AGG - tig0035265:6493-6512 None:intergenic 60.0%
CCTTCCACTCATCTGCTCGC+TGG + tig0035265:6490-6509 Msa1454570:CDS 60.0%
GTTGCCAGCGAGCAGATGAG+TGG - tig0035265:6497-6516 None:intergenic 60.0%
CCAGCGAGCAGATGAGTGGA+AGG - tig0035265:6493-6512 None:intergenic 60.0%
CCTTCCACTCATCTGCTCGC+TGG + tig0035265:6490-6509 Msa1454570:CDS 60.0%
GTTGCCAGCGAGCAGATGAG+TGG - tig0035265:6497-6516 None:intergenic 60.0%
! TACGGGGCCACTGCCGACTA+AGG - tig0035265:6433-6452 None:intergenic 65.0%
! TACGGGGCCACTGCCGACTA+AGG - tig0035265:6433-6452 None:intergenic 65.0%
! GGGGCCACTGCCGACTAAGG+AGG - tig0035265:6430-6449 None:intergenic 70.0%
! GGGGCCACTGCCGACTAAGG+AGG - tig0035265:6430-6449 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0035265 gene 6327 7918 6327 ID=Msa1454570;Name=Msa1454570
tig0035265 mRNA 6327 7918 6327 ID=Msa1454570-mRNA-1;Parent=Msa1454570;Name=Msa1454570-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|1|1|1|1|1|3|396|131
tig0035265 exon 6327 6551 6327 ID=Msa1454570-mRNA-1:exon:19809;Parent=Msa1454570-mRNA-1
tig0035265 exon 6652 6774 6652 ID=Msa1454570-mRNA-1:exon:19810;Parent=Msa1454570-mRNA-1
tig0035265 exon 7391 7918 7391 ID=Msa1454570-mRNA-1:exon:19811;Parent=Msa1454570-mRNA-1
tig0035265 five_prime_UTR 6327 6410 6327 ID=Msa1454570-mRNA-1:five_prime_utr;Parent=Msa1454570-mRNA-1
tig0035265 CDS 6411 6551 6411 ID=Msa1454570-mRNA-1:cds;Parent=Msa1454570-mRNA-1
tig0035265 CDS 6652 6774 6652 ID=Msa1454570-mRNA-1:cds;Parent=Msa1454570-mRNA-1
tig0035265 CDS 7391 7522 7391 ID=Msa1454570-mRNA-1:cds;Parent=Msa1454570-mRNA-1
tig0035265 three_prime_UTR 7523 7918 7523 ID=Msa1454570-mRNA-1:three_prime_utr;Parent=Msa1454570-mRNA-1
Gene Sequence

>Msa1454570

ATGGGATCATTTTTCTCCTCCTTAGTCGGCAGTGGCCCCGTACAGTCATCAGAATCATCAGAGAGTTCTTCCGTCAAGACCTTCCACTCATCTGCTCGCTGGCAACTTCACTTCAACGAACTCAAAGATTCTCCTCGTCTCGTGGTGATTGATTTCTCTGCTACATGGTGTGGACCTTGTAAAATGATGGAACCGATTCTTCAAGCCATGGCTAATGAATTCACTGATGTTGAATTCATCAAAATCGATGTTGATGAATTATCGGATGTGGCACAAGAGTTTAAGGTGCAGGCTATGCCAACGTTTGTGTTGTTGAAGAATGGGAAAGAGGTTGATAAGGTTGTTGGAGCAAAGAAGGATGAACTTAAAAACAAGGTTCAAAAGCACAAAGCTTAG

Protein sequence

>Msa1454570

MGSFFSSLVGSGPVQSSESSESSSVKTFHSSARWQLHFNELKDSPRLVVIDFSATWCGPCKMMEPILQAMANEFTDVEFIKIDVDELSDVAQEFKVQAMPTFVLLKNGKEVDKVVGAKKDELKNKVQKHKA*