AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0969810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0969810 MtrunA17_Chr6g0449281 95.604 273 4 1 1 265 643 915 8.05e-177 510
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0969810 AT3G27530.1 61.069 262 90 3 2 251 642 903 4.97e-93 293

Find 64 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATTCTCACTACAATTT+TGG 0.103699 6_4:+1227915 Msa0969810:CDS
CTCTTCTGCTCTATTTCTTC+TGG 0.216042 6_4:-1228036 None:intergenic
AGTTGCCTCGGATTCAATTT+TGG 0.217310 6_4:-1228838 None:intergenic
CTCTACGGAGTGTCTCTATT+TGG 0.276400 6_4:-1228767 None:intergenic
TCCAAAATTGTAGTGAGAAT+TGG 0.310219 6_4:-1227916 None:intergenic
ATCTCCAAGAAGCATCTAAA+AGG 0.329364 6_4:+1228790 Msa0969810:CDS
CAGGATCTTGTTATTCGAAA+TGG 0.358756 6_4:+1228666 Msa0969810:intron
TAGTGCTAGGTTGTTGGAGT+TGG 0.397357 6_4:+1229112 Msa0969810:CDS
CACTTACTCTTTGCTCAGAC+TGG 0.421800 6_4:-1228728 None:intergenic
AGTGCTAGGTTGTTGGAGTT+GGG 0.430453 6_4:+1229113 Msa0969810:CDS
AGAAGGACCCTCAACATTCC+CGG 0.438413 6_4:+1228977 Msa0969810:CDS
TAGACTTAGTGCTAGGTTGT+TGG 0.440436 6_4:+1229106 Msa0969810:CDS
CTTTCACCTCATTCTCCAGT+TGG 0.464880 6_4:-1228944 None:intergenic
TGGTACATTGGCCGAGGACC+TGG 0.465456 6_4:+1228686 Msa0969810:CDS
CAGTCTGAGCAAAGAGTAAG+TGG 0.470796 6_4:+1228729 Msa0969810:CDS
TAAAAGGTTGGAGATGCTTA+AGG 0.471362 6_4:+1228806 Msa0969810:CDS
ACCCTCAACATTCCCGGATG+TGG 0.472840 6_4:+1228983 Msa0969810:CDS
TAGGTTGTTGGAGTTGGGAG+AGG 0.476758 6_4:+1229118 Msa0969810:CDS
ACTATGTATCAGAATTTAGC+TGG 0.480799 6_4:+1228858 Msa0969810:CDS
CTCCAATGCCTTCAAGTAGT+TGG 0.483847 6_4:-1229148 None:intergenic
GAAGCAGCACTCTGAGATAC+AGG 0.489434 6_4:+1228107 Msa0969810:CDS
TGAGCAATCTAATCTCCAAC+TGG 0.496949 6_4:+1228929 Msa0969810:CDS
GGAGATGCTTAAGGCAGAAA+AGG 0.502282 6_4:+1228815 Msa0969810:CDS
CCAAGAAGCATCTAAAAGGT+TGG 0.502752 6_4:+1228794 Msa0969810:CDS
TCAGAATTTAGCTGGAAAGA+TGG 0.509840 6_4:+1228866 Msa0969810:CDS
CTCCACATCCGGGAATGTTG+AGG 0.512219 6_4:-1228985 None:intergenic
TCCACATCCGGGAATGTTGA+GGG 0.513884 6_4:-1228984 None:intergenic
ATGATCTGCTTGTATGCCTC+GGG 0.515345 6_4:+1229063 Msa0969810:CDS
GTGAAAGCACTGAGGGGAGA+AGG 0.521373 6_4:+1228960 Msa0969810:CDS
TAATCTCCAACTGGAGAATG+AGG 0.528085 6_4:+1228938 Msa0969810:CDS
GCCGAGGACCTGGCTAAGAC+AGG 0.528464 6_4:+1228696 Msa0969810:CDS
AGCAAGGGAAGAAGCTCTGA+AGG 0.533373 6_4:+1229022 Msa0969810:CDS
CTCAAGGCTATTGTATGCAT+CGG 0.535787 6_4:-1228910 None:intergenic
CCTTGCTTTGTTCTTGCCCG+AGG 0.536935 6_4:-1229079 None:intergenic
AACTACTACCTGTCTTAGCC+AGG 0.540435 6_4:-1228704 None:intergenic
GATGTTGACCAACTACTTGA+AGG 0.541260 6_4:+1229140 Msa0969810:CDS
ATGCTTCTTGGAGATCTCTA+CGG 0.548408 6_4:-1228782 None:intergenic
AATGATCTGCTTGTATGCCT+CGG 0.550054 6_4:+1229062 Msa0969810:CDS
GAAGGCATTGGAGATGATGC+TGG 0.553705 6_4:+1229158 Msa0969810:CDS
TGTTATTCGAAATGGTACAT+TGG 0.553981 6_4:+1228674 Msa0969810:CDS
TCGAAATGGTACATTGGCCG+AGG 0.555789 6_4:+1228680 Msa0969810:CDS
GAATGAGGTGAAAGCACTGA+GGG 0.557554 6_4:+1228953 Msa0969810:CDS
GGCAATAAAAGCTGAAGCAA+GGG 0.566134 6_4:+1229007 Msa0969810:CDS
ATTCTGATACATAGTTGCCT+CGG 0.567736 6_4:-1228850 None:intergenic
CAGAAGAGAGGCGAAAGTGA+TGG 0.575651 6_4:+1228051 Msa0969810:CDS
GACCAACTACTTGAAGGCAT+TGG 0.577561 6_4:+1229146 Msa0969810:CDS
ACCTGTCTTAGCCAGGTCCT+CGG 0.579485 6_4:-1228697 None:intergenic
GCAAAGAGTAAGTGGAGGCA+TGG 0.581767 6_4:+1228737 Msa0969810:CDS
GTTGGAGATTAGATTGCTCA+AGG 0.585113 6_4:-1228926 None:intergenic
CTCAACATTCCCGGATGTGG+AGG 0.590364 6_4:+1228986 Msa0969810:CDS
TGCTGAAGATGTCGAAGACG+AGG 0.604461 6_4:+1229184 Msa0969810:CDS
GAAGAAATAGAGCAGAAGAG+AGG 0.612954 6_4:+1228039 Msa0969810:CDS
AAAGGCCAAAATTGAATCCG+AGG 0.614744 6_4:+1228833 Msa0969810:CDS
AGGTGGATAGACTTAGTGCT+AGG 0.616666 6_4:+1229099 Msa0969810:CDS
AGGCAATAAAAGCTGAAGCA+AGG 0.624635 6_4:+1229006 Msa0969810:CDS
TATTAGAGAACAGATTGTGG+AGG 0.628847 6_4:+1227978 Msa0969810:CDS
GAAGCTCTGAAGGAGAGTGA+AGG 0.637129 6_4:+1229032 Msa0969810:CDS
CCTCGGGCAAGAACAAAGCA+AGG 0.643346 6_4:+1229079 Msa0969810:CDS
AAATATTAGAGAACAGATTG+TGG 0.646986 6_4:+1227975 Msa0969810:CDS
GTGATGGTGAATATATAAAG+CGG 0.654240 6_4:+1228067 Msa0969810:CDS
TCTGAGCAAAGAGTAAGTGG+AGG 0.686096 6_4:+1228732 Msa0969810:CDS
AGAATGAGGTGAAAGCACTG+AGG 0.703852 6_4:+1228952 Msa0969810:CDS
CGGGCAAGAACAAAGCAAGG+TGG 0.713272 6_4:+1229082 Msa0969810:CDS
AATGAGGTGAAAGCACTGAG+GGG 0.725813 6_4:+1228954 Msa0969810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATGTTAATAAAAAAACTA+CGG - chr6_4:1228281-1228300 None:intergenic 15.0%
!!! ATTTTGTAGTTGTTTTTAAA+TGG + chr6_4:1228319-1228338 Msa0969810:intron 15.0%
!! CTTTAACAAATTTATCAATA+TGG + chr6_4:1228579-1228598 Msa0969810:intron 15.0%
!! CAATGTTAATAAAAAAACTA+CGG - chr6_4:1228281-1228300 None:intergenic 15.0%
!!! ATTTTGTAGTTGTTTTTAAA+TGG + chr6_4:1228319-1228338 Msa0969810:intron 15.0%
!! CTTTAACAAATTTATCAATA+TGG + chr6_4:1228579-1228598 Msa0969810:intron 15.0%
! AAATATTAGAGAACAGATTG+TGG + chr6_4:1227975-1227994 Msa0969810:CDS 25.0%
! ACGTTGTTAATTATACAGTA+AGG - chr6_4:1228209-1228228 None:intergenic 25.0%
! AAGATTACAAAAAACATTCC+TGG + chr6_4:1228354-1228373 Msa0969810:intron 25.0%
! CTGTTTAATAATAGTACCTT+AGG + chr6_4:1228459-1228478 Msa0969810:intron 25.0%
!!! ACACACTTCTTATTTTTCTA+TGG - chr6_4:1228538-1228557 None:intergenic 25.0%
!! ATAGAAAAATAAGAAGTGTG+TGG + chr6_4:1228537-1228556 Msa0969810:intron 25.0%
!!! ATAAATTTGTTAAAGAGCAC+TGG - chr6_4:1228574-1228593 None:intergenic 25.0%
!! TTGATATGTGTTTGATTTAG+TGG + chr6_4:1228613-1228632 Msa0969810:intron 25.0%
!!! ATTTTTATTTTCATCGTCTC+AGG + chr6_4:1228647-1228666 Msa0969810:intron 25.0%
! AAATATTAGAGAACAGATTG+TGG + chr6_4:1227975-1227994 Msa0969810:CDS 25.0%
! ACGTTGTTAATTATACAGTA+AGG - chr6_4:1228209-1228228 None:intergenic 25.0%
! AAGATTACAAAAAACATTCC+TGG + chr6_4:1228354-1228373 Msa0969810:intron 25.0%
! CTGTTTAATAATAGTACCTT+AGG + chr6_4:1228459-1228478 Msa0969810:intron 25.0%
!!! ACACACTTCTTATTTTTCTA+TGG - chr6_4:1228538-1228557 None:intergenic 25.0%
!! ATAGAAAAATAAGAAGTGTG+TGG + chr6_4:1228537-1228556 Msa0969810:intron 25.0%
!!! ATAAATTTGTTAAAGAGCAC+TGG - chr6_4:1228574-1228593 None:intergenic 25.0%
!! TTGATATGTGTTTGATTTAG+TGG + chr6_4:1228613-1228632 Msa0969810:intron 25.0%
!!! ATTTTTATTTTCATCGTCTC+AGG + chr6_4:1228647-1228666 Msa0969810:intron 25.0%
! TCCAATTCTCACTACAATTT+TGG + chr6_4:1227915-1227934 Msa0969810:CDS 30.0%
TCCAAAATTGTAGTGAGAAT+TGG - chr6_4:1227919-1227938 None:intergenic 30.0%
! GTGATGGTGAATATATAAAG+CGG + chr6_4:1228067-1228086 Msa0969810:CDS 30.0%
ACATGAAAGAAACAGATTCA+TGG - chr6_4:1228180-1228199 None:intergenic 30.0%
CTAAATACTCTGAATTTCGA+AGG - chr6_4:1228256-1228275 None:intergenic 30.0%
!!! CAAGTTAGGTTTTTTTCTGA+TGG + chr6_4:1228432-1228451 Msa0969810:intron 30.0%
TGTTATTCGAAATGGTACAT+TGG + chr6_4:1228674-1228693 Msa0969810:CDS 30.0%
ACTATGTATCAGAATTTAGC+TGG + chr6_4:1228858-1228877 Msa0969810:CDS 30.0%
! TCCAATTCTCACTACAATTT+TGG + chr6_4:1227915-1227934 Msa0969810:CDS 30.0%
TCCAAAATTGTAGTGAGAAT+TGG - chr6_4:1227919-1227938 None:intergenic 30.0%
! GTGATGGTGAATATATAAAG+CGG + chr6_4:1228067-1228086 Msa0969810:CDS 30.0%
ACATGAAAGAAACAGATTCA+TGG - chr6_4:1228180-1228199 None:intergenic 30.0%
CTAAATACTCTGAATTTCGA+AGG - chr6_4:1228256-1228275 None:intergenic 30.0%
!!! CAAGTTAGGTTTTTTTCTGA+TGG + chr6_4:1228432-1228451 Msa0969810:intron 30.0%
TGTTATTCGAAATGGTACAT+TGG + chr6_4:1228674-1228693 Msa0969810:CDS 30.0%
ACTATGTATCAGAATTTAGC+TGG + chr6_4:1228858-1228877 Msa0969810:CDS 30.0%
! CGTGAATTTTGTGAAAAGAC+TGG + chr6_4:1227948-1227967 Msa0969810:CDS 35.0%
! GAATTTTGTGAAAAGACTGG+AGG + chr6_4:1227951-1227970 Msa0969810:CDS 35.0%
TATTAGAGAACAGATTGTGG+AGG + chr6_4:1227978-1227997 Msa0969810:CDS 35.0%
CGTATATATACTGAGAGGAA+TGG - chr6_4:1228149-1228168 None:intergenic 35.0%
TTCCTCTCAGTATATATACG+TGG + chr6_4:1228149-1228168 Msa0969810:intron 35.0%
ATCCACGTATATATACTGAG+AGG - chr6_4:1228154-1228173 None:intergenic 35.0%
ATTCTTGCTGAACAAACCTA+AGG - chr6_4:1228478-1228497 None:intergenic 35.0%
!! CAGGATCTTGTTATTCGAAA+TGG + chr6_4:1228666-1228685 Msa0969810:intron 35.0%
!! ATCTCCAAGAAGCATCTAAA+AGG + chr6_4:1228790-1228809 Msa0969810:CDS 35.0%
TAAAAGGTTGGAGATGCTTA+AGG + chr6_4:1228806-1228825 Msa0969810:CDS 35.0%
ATTCTGATACATAGTTGCCT+CGG - chr6_4:1228853-1228872 None:intergenic 35.0%
TCAGAATTTAGCTGGAAAGA+TGG + chr6_4:1228866-1228885 Msa0969810:CDS 35.0%
! CGTGAATTTTGTGAAAAGAC+TGG + chr6_4:1227948-1227967 Msa0969810:CDS 35.0%
! GAATTTTGTGAAAAGACTGG+AGG + chr6_4:1227951-1227970 Msa0969810:CDS 35.0%
TATTAGAGAACAGATTGTGG+AGG + chr6_4:1227978-1227997 Msa0969810:CDS 35.0%
CGTATATATACTGAGAGGAA+TGG - chr6_4:1228149-1228168 None:intergenic 35.0%
TTCCTCTCAGTATATATACG+TGG + chr6_4:1228149-1228168 Msa0969810:intron 35.0%
ATCCACGTATATATACTGAG+AGG - chr6_4:1228154-1228173 None:intergenic 35.0%
ATTCTTGCTGAACAAACCTA+AGG - chr6_4:1228478-1228497 None:intergenic 35.0%
!! CAGGATCTTGTTATTCGAAA+TGG + chr6_4:1228666-1228685 Msa0969810:intron 35.0%
!! ATCTCCAAGAAGCATCTAAA+AGG + chr6_4:1228790-1228809 Msa0969810:CDS 35.0%
TAAAAGGTTGGAGATGCTTA+AGG + chr6_4:1228806-1228825 Msa0969810:CDS 35.0%
ATTCTGATACATAGTTGCCT+CGG - chr6_4:1228853-1228872 None:intergenic 35.0%
TCAGAATTTAGCTGGAAAGA+TGG + chr6_4:1228866-1228885 Msa0969810:CDS 35.0%
TTATAGTCGTCCAAAAACCC+AGG + chr6_4:1228002-1228021 Msa0969810:intron 40.0%
! ACTACTGTTACCTGGGTTTT+TGG - chr6_4:1228015-1228034 None:intergenic 40.0%
! CTCTTCTGCTCTATTTCTTC+TGG - chr6_4:1228039-1228058 None:intergenic 40.0%
GAAGAAATAGAGCAGAAGAG+AGG + chr6_4:1228039-1228058 Msa0969810:CDS 40.0%
CATCGTAGTTAACACTTTCC+AGG - chr6_4:1228375-1228394 None:intergenic 40.0%
!! GTTGATTCGTTCAGCAAGTT+AGG + chr6_4:1228418-1228437 Msa0969810:intron 40.0%
ATGCTTCTTGGAGATCTCTA+CGG - chr6_4:1228785-1228804 None:intergenic 40.0%
! CCAACCTTTTAGATGCTTCT+TGG - chr6_4:1228797-1228816 None:intergenic 40.0%
!! CCAAGAAGCATCTAAAAGGT+TGG + chr6_4:1228794-1228813 Msa0969810:CDS 40.0%
AAAGGCCAAAATTGAATCCG+AGG + chr6_4:1228833-1228852 Msa0969810:CDS 40.0%
! AGTTGCCTCGGATTCAATTT+TGG - chr6_4:1228841-1228860 None:intergenic 40.0%
CTCAAGGCTATTGTATGCAT+CGG - chr6_4:1228913-1228932 None:intergenic 40.0%
GTTGGAGATTAGATTGCTCA+AGG - chr6_4:1228929-1228948 None:intergenic 40.0%
TGAGCAATCTAATCTCCAAC+TGG + chr6_4:1228929-1228948 Msa0969810:CDS 40.0%
TAATCTCCAACTGGAGAATG+AGG + chr6_4:1228938-1228957 Msa0969810:CDS 40.0%
AGGCAATAAAAGCTGAAGCA+AGG + chr6_4:1229006-1229025 Msa0969810:CDS 40.0%
GGCAATAAAAGCTGAAGCAA+GGG + chr6_4:1229007-1229026 Msa0969810:CDS 40.0%
AATGATCTGCTTGTATGCCT+CGG + chr6_4:1229062-1229081 Msa0969810:CDS 40.0%
TAGACTTAGTGCTAGGTTGT+TGG + chr6_4:1229106-1229125 Msa0969810:CDS 40.0%
GATGTTGACCAACTACTTGA+AGG + chr6_4:1229140-1229159 Msa0969810:CDS 40.0%
TTATAGTCGTCCAAAAACCC+AGG + chr6_4:1228002-1228021 Msa0969810:intron 40.0%
! ACTACTGTTACCTGGGTTTT+TGG - chr6_4:1228015-1228034 None:intergenic 40.0%
! CTCTTCTGCTCTATTTCTTC+TGG - chr6_4:1228039-1228058 None:intergenic 40.0%
GAAGAAATAGAGCAGAAGAG+AGG + chr6_4:1228039-1228058 Msa0969810:CDS 40.0%
CATCGTAGTTAACACTTTCC+AGG - chr6_4:1228375-1228394 None:intergenic 40.0%
!! GTTGATTCGTTCAGCAAGTT+AGG + chr6_4:1228418-1228437 Msa0969810:intron 40.0%
ATGCTTCTTGGAGATCTCTA+CGG - chr6_4:1228785-1228804 None:intergenic 40.0%
! CCAACCTTTTAGATGCTTCT+TGG - chr6_4:1228797-1228816 None:intergenic 40.0%
!! CCAAGAAGCATCTAAAAGGT+TGG + chr6_4:1228794-1228813 Msa0969810:CDS 40.0%
AAAGGCCAAAATTGAATCCG+AGG + chr6_4:1228833-1228852 Msa0969810:CDS 40.0%
! AGTTGCCTCGGATTCAATTT+TGG - chr6_4:1228841-1228860 None:intergenic 40.0%
CTCAAGGCTATTGTATGCAT+CGG - chr6_4:1228913-1228932 None:intergenic 40.0%
GTTGGAGATTAGATTGCTCA+AGG - chr6_4:1228929-1228948 None:intergenic 40.0%
TGAGCAATCTAATCTCCAAC+TGG + chr6_4:1228929-1228948 Msa0969810:CDS 40.0%
TAATCTCCAACTGGAGAATG+AGG + chr6_4:1228938-1228957 Msa0969810:CDS 40.0%
AGGCAATAAAAGCTGAAGCA+AGG + chr6_4:1229006-1229025 Msa0969810:CDS 40.0%
GGCAATAAAAGCTGAAGCAA+GGG + chr6_4:1229007-1229026 Msa0969810:CDS 40.0%
AATGATCTGCTTGTATGCCT+CGG + chr6_4:1229062-1229081 Msa0969810:CDS 40.0%
TAGACTTAGTGCTAGGTTGT+TGG + chr6_4:1229106-1229125 Msa0969810:CDS 40.0%
GATGTTGACCAACTACTTGA+AGG + chr6_4:1229140-1229159 Msa0969810:CDS 40.0%
TTCTGGCACTACTGTTACCT+GGG - chr6_4:1228022-1228041 None:intergenic 45.0%
! TAAGAAGTGTGTGGAACTGC+AGG + chr6_4:1228546-1228565 Msa0969810:intron 45.0%
AACTACTACCTGTCTTAGCC+AGG - chr6_4:1228707-1228726 None:intergenic 45.0%
CACTTACTCTTTGCTCAGAC+TGG - chr6_4:1228731-1228750 None:intergenic 45.0%
CAGTCTGAGCAAAGAGTAAG+TGG + chr6_4:1228729-1228748 Msa0969810:CDS 45.0%
TCTGAGCAAAGAGTAAGTGG+AGG + chr6_4:1228732-1228751 Msa0969810:CDS 45.0%
! CTCTACGGAGTGTCTCTATT+TGG - chr6_4:1228770-1228789 None:intergenic 45.0%
GGAGATGCTTAAGGCAGAAA+AGG + chr6_4:1228815-1228834 Msa0969810:CDS 45.0%
CTTTCACCTCATTCTCCAGT+TGG - chr6_4:1228947-1228966 None:intergenic 45.0%
!! AGAATGAGGTGAAAGCACTG+AGG + chr6_4:1228952-1228971 Msa0969810:CDS 45.0%
!! GAATGAGGTGAAAGCACTGA+GGG + chr6_4:1228953-1228972 Msa0969810:CDS 45.0%
!! AATGAGGTGAAAGCACTGAG+GGG + chr6_4:1228954-1228973 Msa0969810:CDS 45.0%
! CTTTTATTGCCTCCACATCC+GGG - chr6_4:1228998-1229017 None:intergenic 45.0%
! GCTTTTATTGCCTCCACATC+CGG - chr6_4:1228999-1229018 None:intergenic 45.0%
ATGATCTGCTTGTATGCCTC+GGG + chr6_4:1229063-1229082 Msa0969810:CDS 45.0%
AGGTGGATAGACTTAGTGCT+AGG + chr6_4:1229099-1229118 Msa0969810:CDS 45.0%
TAGTGCTAGGTTGTTGGAGT+TGG + chr6_4:1229112-1229131 Msa0969810:CDS 45.0%
AGTGCTAGGTTGTTGGAGTT+GGG + chr6_4:1229113-1229132 Msa0969810:CDS 45.0%
! GACCAACTACTTGAAGGCAT+TGG + chr6_4:1229146-1229165 Msa0969810:CDS 45.0%
CTCCAATGCCTTCAAGTAGT+TGG - chr6_4:1229151-1229170 None:intergenic 45.0%
TTCTGGCACTACTGTTACCT+GGG - chr6_4:1228022-1228041 None:intergenic 45.0%
! TAAGAAGTGTGTGGAACTGC+AGG + chr6_4:1228546-1228565 Msa0969810:intron 45.0%
AACTACTACCTGTCTTAGCC+AGG - chr6_4:1228707-1228726 None:intergenic 45.0%
CACTTACTCTTTGCTCAGAC+TGG - chr6_4:1228731-1228750 None:intergenic 45.0%
CAGTCTGAGCAAAGAGTAAG+TGG + chr6_4:1228729-1228748 Msa0969810:CDS 45.0%
TCTGAGCAAAGAGTAAGTGG+AGG + chr6_4:1228732-1228751 Msa0969810:CDS 45.0%
! CTCTACGGAGTGTCTCTATT+TGG - chr6_4:1228770-1228789 None:intergenic 45.0%
GGAGATGCTTAAGGCAGAAA+AGG + chr6_4:1228815-1228834 Msa0969810:CDS 45.0%
CTTTCACCTCATTCTCCAGT+TGG - chr6_4:1228947-1228966 None:intergenic 45.0%
!! AGAATGAGGTGAAAGCACTG+AGG + chr6_4:1228952-1228971 Msa0969810:CDS 45.0%
!! GAATGAGGTGAAAGCACTGA+GGG + chr6_4:1228953-1228972 Msa0969810:CDS 45.0%
!! AATGAGGTGAAAGCACTGAG+GGG + chr6_4:1228954-1228973 Msa0969810:CDS 45.0%
! CTTTTATTGCCTCCACATCC+GGG - chr6_4:1228998-1229017 None:intergenic 45.0%
! GCTTTTATTGCCTCCACATC+CGG - chr6_4:1228999-1229018 None:intergenic 45.0%
ATGATCTGCTTGTATGCCTC+GGG + chr6_4:1229063-1229082 Msa0969810:CDS 45.0%
AGGTGGATAGACTTAGTGCT+AGG + chr6_4:1229099-1229118 Msa0969810:CDS 45.0%
TAGTGCTAGGTTGTTGGAGT+TGG + chr6_4:1229112-1229131 Msa0969810:CDS 45.0%
AGTGCTAGGTTGTTGGAGTT+GGG + chr6_4:1229113-1229132 Msa0969810:CDS 45.0%
! GACCAACTACTTGAAGGCAT+TGG + chr6_4:1229146-1229165 Msa0969810:CDS 45.0%
CTCCAATGCCTTCAAGTAGT+TGG - chr6_4:1229151-1229170 None:intergenic 45.0%
CTTCTGGCACTACTGTTACC+TGG - chr6_4:1228023-1228042 None:intergenic 50.0%
CAGAAGAGAGGCGAAAGTGA+TGG + chr6_4:1228051-1228070 Msa0969810:CDS 50.0%
!! GAAGCAGCACTCTGAGATAC+AGG + chr6_4:1228107-1228126 Msa0969810:CDS 50.0%
TCGAAATGGTACATTGGCCG+AGG + chr6_4:1228680-1228699 Msa0969810:CDS 50.0%
GCAAAGAGTAAGTGGAGGCA+TGG + chr6_4:1228737-1228756 Msa0969810:CDS 50.0%
AGAAGGACCCTCAACATTCC+CGG + chr6_4:1228977-1228996 Msa0969810:CDS 50.0%
TCCACATCCGGGAATGTTGA+GGG - chr6_4:1228987-1229006 None:intergenic 50.0%
! AGCAAGGGAAGAAGCTCTGA+AGG + chr6_4:1229022-1229041 Msa0969810:CDS 50.0%
!! GAAGCTCTGAAGGAGAGTGA+AGG + chr6_4:1229032-1229051 Msa0969810:CDS 50.0%
TAGGTTGTTGGAGTTGGGAG+AGG + chr6_4:1229118-1229137 Msa0969810:CDS 50.0%
!! GAAGGCATTGGAGATGATGC+TGG + chr6_4:1229158-1229177 Msa0969810:CDS 50.0%
TGCTGAAGATGTCGAAGACG+AGG + chr6_4:1229184-1229203 Msa0969810:CDS 50.0%
CTTCTGGCACTACTGTTACC+TGG - chr6_4:1228023-1228042 None:intergenic 50.0%
CAGAAGAGAGGCGAAAGTGA+TGG + chr6_4:1228051-1228070 Msa0969810:CDS 50.0%
!! GAAGCAGCACTCTGAGATAC+AGG + chr6_4:1228107-1228126 Msa0969810:CDS 50.0%
TCGAAATGGTACATTGGCCG+AGG + chr6_4:1228680-1228699 Msa0969810:CDS 50.0%
GCAAAGAGTAAGTGGAGGCA+TGG + chr6_4:1228737-1228756 Msa0969810:CDS 50.0%
AGAAGGACCCTCAACATTCC+CGG + chr6_4:1228977-1228996 Msa0969810:CDS 50.0%
TCCACATCCGGGAATGTTGA+GGG - chr6_4:1228987-1229006 None:intergenic 50.0%
! AGCAAGGGAAGAAGCTCTGA+AGG + chr6_4:1229022-1229041 Msa0969810:CDS 50.0%
!! GAAGCTCTGAAGGAGAGTGA+AGG + chr6_4:1229032-1229051 Msa0969810:CDS 50.0%
TAGGTTGTTGGAGTTGGGAG+AGG + chr6_4:1229118-1229137 Msa0969810:CDS 50.0%
!! GAAGGCATTGGAGATGATGC+TGG + chr6_4:1229158-1229177 Msa0969810:CDS 50.0%
TGCTGAAGATGTCGAAGACG+AGG + chr6_4:1229184-1229203 Msa0969810:CDS 50.0%
ACCTGTCTTAGCCAGGTCCT+CGG - chr6_4:1228700-1228719 None:intergenic 55.0%
!! GTGAAAGCACTGAGGGGAGA+AGG + chr6_4:1228960-1228979 Msa0969810:CDS 55.0%
ACCCTCAACATTCCCGGATG+TGG + chr6_4:1228983-1229002 Msa0969810:CDS 55.0%
CTCCACATCCGGGAATGTTG+AGG - chr6_4:1228988-1229007 None:intergenic 55.0%
CTCAACATTCCCGGATGTGG+AGG + chr6_4:1228986-1229005 Msa0969810:CDS 55.0%
! CCTTGCTTTGTTCTTGCCCG+AGG - chr6_4:1229082-1229101 None:intergenic 55.0%
CCTCGGGCAAGAACAAAGCA+AGG + chr6_4:1229079-1229098 Msa0969810:CDS 55.0%
CGGGCAAGAACAAAGCAAGG+TGG + chr6_4:1229082-1229101 Msa0969810:CDS 55.0%
ACCTGTCTTAGCCAGGTCCT+CGG - chr6_4:1228700-1228719 None:intergenic 55.0%
!! GTGAAAGCACTGAGGGGAGA+AGG + chr6_4:1228960-1228979 Msa0969810:CDS 55.0%
ACCCTCAACATTCCCGGATG+TGG + chr6_4:1228983-1229002 Msa0969810:CDS 55.0%
CTCCACATCCGGGAATGTTG+AGG - chr6_4:1228988-1229007 None:intergenic 55.0%
CTCAACATTCCCGGATGTGG+AGG + chr6_4:1228986-1229005 Msa0969810:CDS 55.0%
! CCTTGCTTTGTTCTTGCCCG+AGG - chr6_4:1229082-1229101 None:intergenic 55.0%
CCTCGGGCAAGAACAAAGCA+AGG + chr6_4:1229079-1229098 Msa0969810:CDS 55.0%
CGGGCAAGAACAAAGCAAGG+TGG + chr6_4:1229082-1229101 Msa0969810:CDS 55.0%
TGGTACATTGGCCGAGGACC+TGG + chr6_4:1228686-1228705 Msa0969810:CDS 60.0%
TGGTACATTGGCCGAGGACC+TGG + chr6_4:1228686-1228705 Msa0969810:CDS 60.0%
GCCGAGGACCTGGCTAAGAC+AGG + chr6_4:1228696-1228715 Msa0969810:CDS 65.0%
GCCGAGGACCTGGCTAAGAC+AGG + chr6_4:1228696-1228715 Msa0969810:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 1227856 1229217 1227856 ID=Msa0969810;Name=Msa0969810
chr6_4 mRNA 1227856 1229217 1227856 ID=Msa0969810-mRNA-1;Parent=Msa0969810;Name=Msa0969810-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.5|0|0.66|1|1|3|0|265
chr6_4 exon 1227856 1227999 1227856 ID=Msa0969810-mRNA-1:exon:665;Parent=Msa0969810-mRNA-1
chr6_4 exon 1228024 1228128 1228024 ID=Msa0969810-mRNA-1:exon:666;Parent=Msa0969810-mRNA-1
chr6_4 exon 1228669 1229217 1228669 ID=Msa0969810-mRNA-1:exon:667;Parent=Msa0969810-mRNA-1
chr6_4 CDS 1227856 1227999 1227856 ID=Msa0969810-mRNA-1:cds;Parent=Msa0969810-mRNA-1
chr6_4 CDS 1228024 1228128 1228024 ID=Msa0969810-mRNA-1:cds;Parent=Msa0969810-mRNA-1
chr6_4 CDS 1228669 1229217 1228669 ID=Msa0969810-mRNA-1:cds;Parent=Msa0969810-mRNA-1
Gene Sequence

>Msa0969810

ATGGCAGATATTCAAGATGTAGATGAGAATGATTTGTCAGAAAAGAAAAATACAGATGATCCAATTCTCACTACAATTTTGGATTCTTACTTCGTGAATTTTGTGAAAAGACTGGAGGCAAATATTAGAGAACAGATTGTGGAGGTAACAGTAGTGCCAGAAGAAATAGAGCAGAAGAGAGGCGAAAGTGATGGTGAATATATAAAGCGGCTGAAAGCTTTCGTTGAGAAGCAGCACTCTGAGATACAGGATCTTGTTATTCGAAATGGTACATTGGCCGAGGACCTGGCTAAGACAGGTAGTAGTTTCCAGTCTGAGCAAAGAGTAAGTGGAGGCATGGACAGAGTCCAAATAGAGACACTCCGTAGAGATCTCCAAGAAGCATCTAAAAGGTTGGAGATGCTTAAGGCAGAAAAGGCCAAAATTGAATCCGAGGCAACTATGTATCAGAATTTAGCTGGAAAGATGGAATCTGATCTACAGAGTCTGTCCGATGCATACAATAGCCTTGAGCAATCTAATCTCCAACTGGAGAATGAGGTGAAAGCACTGAGGGGAGAAGGACCCTCAACATTCCCGGATGTGGAGGCAATAAAAGCTGAAGCAAGGGAAGAAGCTCTGAAGGAGAGTGAAGGTGAACTGAATGATCTGCTTGTATGCCTCGGGCAAGAACAAAGCAAGGTGGATAGACTTAGTGCTAGGTTGTTGGAGTTGGGAGAGGATGTTGACCAACTACTTGAAGGCATTGGAGATGATGCTGGAGCTGCTGAAGATGTCGAAGACGAGGATGACGAGTAA

Protein sequence

>Msa0969810

MADIQDVDENDLSEKKNTDDPILTTILDSYFVNFVKRLEANIREQIVEVTVVPEEIEQKRGESDGEYIKRLKAFVEKQHSEIQDLVIRNGTLAEDLAKTGSSFQSEQRVSGGMDRVQIETLRRDLQEASKRLEMLKAEKAKIESEATMYQNLAGKMESDLQSLSDAYNSLEQSNLQLENEVKALRGEGPSTFPDVEAIKAEAREEALKESEGELNDLLVCLGQEQSKVDRLSARLLELGEDVDQLLEGIGDDAGAAEDVEDEDDE*