AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0698540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0698540 MtrunA17_Chr4g0051981 97.826 460 4 2 1 454 1 460 0.0 916
Msa0698540 MtrunA17_Chr8g0382111 80.000 125 19 2 336 454 1 125 7.13e-52 171
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0698540 AT3G51270.3 66.737 475 123 8 1 454 1 461 0.0 561
Msa0698540 AT3G51270.1 66.737 475 123 8 1 454 1 461 0.0 561
Msa0698540 AT3G51270.4 66.737 475 123 8 1 454 1 461 0.0 561
Msa0698540 AT3G51270.2 64.523 482 119 11 1 454 1 458 0.0 532

Find 133 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTCTTTGTGAGAATTCC+TGG 0.205564 4_4:+68897282 None:intergenic
CCTAAGTTTAAGCTTTGTTT+AGG 0.241536 4_4:+68896719 None:intergenic
GGTTCTCACCGCCGTTGAAT+TGG 0.262655 4_4:-68902223 Msa0698540:CDS
AATTTAGTTGTTCTATTAGA+TGG 0.282060 4_4:+68897109 None:intergenic
AACATCGTAGTAGTTATAAT+TGG 0.288616 4_4:-68901720 Msa0698540:CDS
GAGCAGCTGGTGAGTTATAT+TGG 0.310702 4_4:-68897218 Msa0698540:exon
CAATTGTTGGTATAATTATT+CGG 0.324204 4_4:-68900800 Msa0698540:CDS
TCAAGTTTCACTTGTTCAGC+TGG 0.338394 4_4:+68896647 None:intergenic
GAACTTGCTGCTAGTGGCTT+TGG 0.348488 4_4:-68898785 Msa0698540:CDS
ATCAAAACTATGGTCAATAA+AGG 0.354092 4_4:-68902027 Msa0698540:CDS
CTAAGTTTAAGCTTTGTTTA+GGG 0.354544 4_4:+68896720 None:intergenic
GTTCTCACCGCCGTTGAATT+GGG 0.377927 4_4:-68902222 Msa0698540:CDS
CGGGTTAAGTTTCGTGAATC+GGG 0.385739 4_4:+68902470 None:intergenic
TCGGGTTAAGTTTCGTGAAT+CGG 0.393761 4_4:+68902469 None:intergenic
AAAGCTTAAACTTAGGCAAT+TGG 0.396835 4_4:-68896712 Msa0698540:three_prime_UTR
CATATGAATTGTTTAGACTT+TGG 0.398935 4_4:-68896903 Msa0698540:three_prime_UTR
GGTGTAAGTCGTCGGACGGC+GGG 0.401024 4_4:+68902385 None:intergenic
TAAGCTTTGTTTAGGGCCTT+AGG 0.404349 4_4:+68896727 None:intergenic
CTACTATCAATTATCTATAC+TGG 0.406992 4_4:-68896874 Msa0698540:three_prime_UTR
TGTAATATCTTTCGTGTATC+GGG 0.408905 4_4:+68902451 None:intergenic
GCTCTTACATCTTTGCATTA+CGG 0.410534 4_4:+68900540 None:intergenic
CGTAGGGGACGGAAGAAACT+TGG 0.423011 4_4:-68897307 Msa0698540:CDS
TGCTATAGCATCAGCTCGTA+GGG 0.423360 4_4:-68897323 Msa0698540:CDS
AGTCGTCGGACGGCGGGGAC+TGG 0.430175 4_4:+68902391 None:intergenic
CGATTATGTTCCACAGCCTC+TGG 0.430757 4_4:+68901540 None:intergenic
ATTTGATTTGCAGGAGGAAG+TGG 0.434562 4_4:-68897392 Msa0698540:intron
ATTTATCTGCAGTTTATTGA+AGG 0.437822 4_4:-68898661 Msa0698540:intron
GTCTCCGTTGGTCGCCAAAT+CGG 0.440264 4_4:-68901997 Msa0698540:CDS
TGTTCCACAGCCTCTGGAAC+AGG 0.441351 4_4:+68901546 None:intergenic
GTATGAAAGCTGCATTGATT+TGG 0.444339 4_4:-68897012 Msa0698540:three_prime_UTR
GGAAAAGAGGAGAGATTTGA+AGG 0.444975 4_4:-68897721 Msa0698540:CDS
GTTCTGCAAATGCAGCGTTC+AGG 0.447538 4_4:-68900859 Msa0698540:intron
TTCTTTACATTTGTCAGAGC+AGG 0.450728 4_4:-68898554 Msa0698540:intron
TTTCAATGAATTTAACATCA+TGG 0.456130 4_4:-68900748 Msa0698540:intron
ATCGGCGTTGGAAAAGAATC+TGG 0.462402 4_4:-68901979 Msa0698540:intron
TGTTCAGCTGGGTTCACAAA+AGG 0.464412 4_4:+68896659 None:intergenic
GTGTAATATCTTTCGTGTAT+CGG 0.474913 4_4:+68902450 None:intergenic
TTTGAGGTTGCTGATGAAGA+TGG 0.478832 4_4:-68901820 Msa0698540:CDS
TGAAAACAGCGGATCTGAAA+AGG 0.481623 4_4:-68897698 Msa0698540:CDS
CAAGTTTCACTTGTTCAGCT+GGG 0.481972 4_4:+68896648 None:intergenic
TTAAAACTCAAACATATGTA+TGG 0.482383 4_4:-68897049 Msa0698540:three_prime_UTR
TACTAAATATATAGATTCAA+TGG 0.486589 4_4:-68897136 Msa0698540:three_prime_UTR
GATAACGACGATTCTAATGA+AGG 0.490096 4_4:-68898872 Msa0698540:CDS
TAAAGAATTTGCTTTCATGA+AGG 0.495198 4_4:-68901671 Msa0698540:intron
CCTAAACAAAGCTTAAACTT+AGG 0.496307 4_4:-68896719 Msa0698540:three_prime_UTR
TTCAAATGCAAATGAGCAGC+TGG 0.501357 4_4:-68897231 Msa0698540:CDS
TCTTCAATAGACAGCAGTGC+TGG 0.505671 4_4:-68898821 Msa0698540:CDS
AATTTAGTCGTTCTAACAGA+TGG 0.505936 4_4:+68897078 None:intergenic
TTCTTCTAGTTCAATACTTG+AGG 0.508776 4_4:-68896829 Msa0698540:three_prime_UTR
GTGAAAATTGCAGCGGATGA+CGG 0.509119 4_4:+68902349 None:intergenic
TGTTCCTCCGAAACTTCTGC+TGG 0.509881 4_4:-68896756 Msa0698540:three_prime_UTR
TGGTGTAAGTCGTCGGACGG+CGG 0.510388 4_4:+68902384 None:intergenic
AATCATAACCAAGGTAGGTA+AGG 0.513088 4_4:+68902058 None:intergenic
GACGGAAGAAACTTGGATCC+AGG 0.515564 4_4:-68897300 Msa0698540:CDS
GTTCAGCAGGGACAATTTCG+TGG 0.518585 4_4:+68902190 None:intergenic
TTTGATTTGCAGGAGGAAGT+GGG 0.518753 4_4:-68897391 Msa0698540:intron
ATTCGGTCGATAAGTTCAGC+AGG 0.519667 4_4:+68902177 None:intergenic
CATGTTTGAGACGAGCGATT+CGG 0.519870 4_4:+68902160 None:intergenic
CATATGTATGGAATGTCCTT+CGG 0.520054 4_4:-68897037 Msa0698540:three_prime_UTR
GTGCTATAGCATCAGCTCGT+AGG 0.522126 4_4:-68897324 Msa0698540:CDS
GTTTCTCATGCCCAATTCAA+CGG 0.522663 4_4:+68902212 None:intergenic
TGTTGGTATAATTATTCGGC+TGG 0.523681 4_4:-68900796 Msa0698540:CDS
ATTTCCTGTTCCAGAGGCTG+TGG 0.524597 4_4:-68901550 Msa0698540:CDS
TTATGGCTATGAAGTTACAT+AGG 0.526717 4_4:-68901792 Msa0698540:CDS
GTCATTCGAATATGTTGAAG+TGG 0.527978 4_4:-68897168 Msa0698540:three_prime_UTR
TTTCCGACTTATCAAACTCT+CGG 0.529576 4_4:+68902306 None:intergenic
TGAAACCATGTTTAGGATGA+GGG 0.529887 4_4:-68897757 Msa0698540:intron
AGAGACATAATTATTCTCCC+TGG 0.530051 4_4:+68896970 None:intergenic
CAAACATGGTGGCACCTACA+AGG 0.530222 4_4:-68902145 Msa0698540:CDS
GGATTTCGCCTTACCTACCT+TGG 0.531140 4_4:-68902066 Msa0698540:CDS
AAGAAAATCATAACCAAGGT+AGG 0.534589 4_4:+68902053 None:intergenic
AAGATGAGGAAGATATTCAA+AGG 0.538915 4_4:-68898757 Msa0698540:CDS
TGATTTGCTAGATATATTTG+AGG 0.539655 4_4:-68901836 Msa0698540:intron
TGCGACACAGACACCATTTG+CGG 0.549608 4_4:+68900563 None:intergenic
GCTATGAAGTTACATAGGCT+TGG 0.554098 4_4:-68901787 Msa0698540:CDS
ATGACATGAGGTCAATCGCA+TGG 0.556701 4_4:+68897186 None:intergenic
AAAGGTGTCTTCGTCTCCGT+TGG 0.561674 4_4:-68902009 Msa0698540:CDS
ACATGAAAGTCATGGAAAAG+AGG 0.563019 4_4:-68897734 Msa0698540:CDS
ACAAATTCTGATAGTGAAGA+TGG 0.564391 4_4:-68898622 Msa0698540:CDS
GTTGGTCGCCAAATCGGCGT+TGG 0.564870 4_4:-68901991 Msa0698540:CDS
GCGGATGACGGAGAAGGAAG+CGG 0.567373 4_4:+68902361 None:intergenic
GATAAGGAACTTGCTGCTAG+TGG 0.569623 4_4:-68898791 Msa0698540:CDS
AGACCGAGAGTTTGATAAGT+CGG 0.570330 4_4:-68902309 Msa0698540:five_prime_UTR
AGATGAGGAAGATATTCAAA+GGG 0.572279 4_4:-68898756 Msa0698540:intron
CGAATCGCTCGTCTCAAACA+TGG 0.579259 4_4:-68902159 Msa0698540:CDS
GATGAGGGACATGAAAGTCA+TGG 0.580821 4_4:-68897742 Msa0698540:CDS
GTAATCATGTCGCTTGTCCA+AGG 0.582155 4_4:-68901510 Msa0698540:CDS
AACGCCGATTTGGCGACCAA+CGG 0.583074 4_4:+68901993 None:intergenic
GATCAGGCTTTGCAAACACA+TGG 0.584897 4_4:-68901573 Msa0698540:intron
TAGCATCAGCTCGTAGGGGA+CGG 0.585566 4_4:-68897318 Msa0698540:CDS
CAAATTCTTTAAGCGCAGCA+AGG 0.587058 4_4:+68901683 None:intergenic
ATTATTCGGCTGGCAGAACA+TGG 0.588090 4_4:-68900786 Msa0698540:CDS
TATCAATTATCTATACTGGC+AGG 0.588773 4_4:-68896870 Msa0698540:three_prime_UTR
AATGAAGGGAGAGAGGAAGC+CGG 0.589391 4_4:-68898857 Msa0698540:CDS
CAGGAATTCTCACAAAGACA+AGG 0.593405 4_4:-68897281 Msa0698540:CDS
TGACATGAGGTCAATCGCAT+GGG 0.595932 4_4:+68897187 None:intergenic
AAACTTAGGCAATTGGCTCG+CGG 0.599444 4_4:-68896705 Msa0698540:three_prime_UTR
GTTAAGTTTCGTGAATCGGG+CGG 0.599819 4_4:+68902473 None:intergenic
ATTGCAGCGGATGACGGAGA+AGG 0.600404 4_4:+68902355 None:intergenic
TAGGTCATCTCAAAATGCTA+AGG 0.601055 4_4:-68897254 Msa0698540:CDS
GCACTTACAGAGGATAACCT+TGG 0.602178 4_4:+68901493 None:intergenic
CGATTCTAATGAAGGGAGAG+AGG 0.607327 4_4:-68898864 Msa0698540:CDS
CGGTGGTGTAAGTCGTCGGA+CGG 0.609593 4_4:+68902381 None:intergenic
CCCTAAAATCATCTTTCGAG+AGG 0.609662 4_4:+68902244 None:intergenic
ACATGGATTTCCTGTTCCAG+AGG 0.611150 4_4:-68901556 Msa0698540:CDS
ATAACGACGATTCTAATGAA+GGG 0.618074 4_4:-68898871 Msa0698540:CDS
GTGTAAGTCGTCGGACGGCG+GGG 0.618632 4_4:+68902386 None:intergenic
GAACGACAGAATACATAGGA+AGG 0.622865 4_4:+68896933 None:intergenic
TCTGCAGTTTATTGAAGGCG+AGG 0.623489 4_4:-68898656 Msa0698540:intron
CAAGTACAAGATTCCTCAAG+GGG 0.624299 4_4:+68896527 None:intergenic
GAAGCGGTGGTGTAAGTCGT+CGG 0.625296 4_4:+68902377 None:intergenic
TGCAGCTTTCATACCTCCGA+AGG 0.626462 4_4:+68897021 None:intergenic
GCAGTTTATTGAAGGCGAGG+TGG 0.636859 4_4:-68898653 Msa0698540:intron
CACGACTCTACTAAATACGA+TGG 0.637122 4_4:-68902087 Msa0698540:CDS
GCAAGAACGACAGAATACAT+AGG 0.641202 4_4:+68896929 None:intergenic
ACAAGTACAAGATTCCTCAA+GGG 0.643012 4_4:+68896526 None:intergenic
TCGATATGTGAAAATTGCAG+CGG 0.646218 4_4:+68902342 None:intergenic
CTCACAAAGACAAGGGTGGT+AGG 0.646398 4_4:-68897273 Msa0698540:CDS
TGATAGTGAAGATGGTGACT+TGG 0.646642 4_4:-68898614 Msa0698540:CDS
ATGTATGGAATGTCCTTCGG+AGG 0.658752 4_4:-68897034 Msa0698540:three_prime_UTR
GATGACGGAGAAGGAAGCGG+TGG 0.661224 4_4:+68902364 None:intergenic
AAAGGAAGATGCAAGCGACA+CGG 0.662177 4_4:-68897680 Msa0698540:intron
TGGCAAGAAAATCATAACCA+AGG 0.675307 4_4:+68902049 None:intergenic
CAACATATTCGAATGACATG+AGG 0.677238 4_4:+68897174 None:intergenic
TTCGGTCGATAAGTTCAGCA+GGG 0.678863 4_4:+68902178 None:intergenic
AAAACCAGCAGAAGTTTCGG+AGG 0.681603 4_4:+68896752 None:intergenic
TCTCATGCCCAATTCAACGG+CGG 0.688093 4_4:+68902215 None:intergenic
AGGAATTCTCACAAAGACAA+GGG 0.690996 4_4:-68897280 Msa0698540:CDS
AGATTTGAAGGTGAAAACAG+CGG 0.713597 4_4:-68897709 Msa0698540:CDS
AATTCTCACAAAGACAAGGG+TGG 0.720526 4_4:-68897277 Msa0698540:CDS
ATCGCTCGTCTCAAACATGG+TGG 0.722151 4_4:-68902156 Msa0698540:CDS
GCTATAGCATCAGCTCGTAG+GGG 0.722557 4_4:-68897322 Msa0698540:CDS
AAGTACAAGATTCCTCAAGG+GGG 0.787550 4_4:+68896528 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTATTGTTAAATTATTTT+CGG - chr4_4:68899256-68899275 Msa0698540:intron 10.0%
!! AAAATATCTATAAATCTCTT+AGG + chr4_4:68897963-68897982 None:intergenic 15.0%
!! AAAAAAAAACAGAATTTGAA+GGG + chr4_4:68898520-68898539 None:intergenic 15.0%
!!! AACTTTTTATTGAGTTTAAT+TGG - chr4_4:68898696-68898715 Msa0698540:intron 15.0%
!!! TTAACTTATTGAAAGATTTT+GGG - chr4_4:68900027-68900046 Msa0698540:intron 15.0%
!!! TTATTTTGATGAATTTAGTT+AGG - chr4_4:68900556-68900575 Msa0698540:CDS 15.0%
!! AAAGAAATATAAAACAATAG+TGG - chr4_4:68900596-68900615 Msa0698540:CDS 15.0%
!! GAAAATTAATTAACTACAAA+AGG - chr4_4:68900727-68900746 Msa0698540:intron 15.0%
!! TCAATTAGAATTGTAATATA+CGG + chr4_4:68901223-68901242 None:intergenic 15.0%
!! AAATCAAATTAATACCATTA+TGG + chr4_4:68901608-68901627 None:intergenic 15.0%
!! TACTAAATATATAGATTCAA+TGG - chr4_4:68901875-68901894 Msa0698540:intron 15.0%
!! ATGAGAAATAACATAGATTT+CGG - chr4_4:68897794-68897813 Msa0698540:intron 20.0%
!!! AGATATTTTGAATTACTCTA+AGG - chr4_4:68897974-68897993 Msa0698540:intron 20.0%
!! AGGATAGAGTTTAAATATTA+TGG - chr4_4:68897994-68898013 Msa0698540:intron 20.0%
!! GGATAGAGTTTAAATATTAT+GGG - chr4_4:68897995-68898014 Msa0698540:intron 20.0%
!! CAATTGTTGGTATAATTATT+CGG - chr4_4:68898211-68898230 Msa0698540:intron 20.0%
!! TTTCAATGAATTTAACATCA+TGG - chr4_4:68898263-68898282 Msa0698540:intron 20.0%
!!! TCATTACATGTCATTTTTTA+TGG - chr4_4:68898349-68898368 Msa0698540:intron 20.0%
!! GAAAAAAAAACAGAATTTGA+AGG + chr4_4:68898521-68898540 None:intergenic 20.0%
!! TAATAGTGATATTATGTGTT+GGG + chr4_4:68898835-68898854 None:intergenic 20.0%
!! ATAATAGTGATATTATGTGT+TGG + chr4_4:68898836-68898855 None:intergenic 20.0%
!!! TCAACTAATATATTTTCGTT+AGG - chr4_4:68898860-68898879 Msa0698540:CDS 20.0%
!! CATTTCAAAATTAAGGAATT+TGG - chr4_4:68899040-68899059 Msa0698540:intron 20.0%
!!! AAAATTAAGGAATTTGGAAT+TGG - chr4_4:68899046-68899065 Msa0698540:intron 20.0%
!!! AAATTAAGGAATTTGGAATT+GGG - chr4_4:68899047-68899066 Msa0698540:intron 20.0%
!! TTAGTTAAGTAGTAATGTTA+AGG - chr4_4:68899084-68899103 Msa0698540:intron 20.0%
!!! TTATTTCTAGAAAATATCAC+AGG + chr4_4:68899478-68899497 None:intergenic 20.0%
!!! CTTAACTTATTGAAAGATTT+TGG - chr4_4:68900026-68900045 Msa0698540:intron 20.0%
!! AATGCATTATAACTAAGAAA+AGG + chr4_4:68900297-68900316 None:intergenic 20.0%
!! GATAAATTTGAAGATATTTG+AGG + chr4_4:68900337-68900356 None:intergenic 20.0%
!! TGTTATATTAGAAGAATCAA+GGG + chr4_4:68900685-68900704 None:intergenic 20.0%
!!! TTTCTTCATGATGAATTTTT+TGG - chr4_4:68901409-68901428 Msa0698540:intron 20.0%
!!! TTCTTCATGATGAATTTTTT+GGG - chr4_4:68901410-68901429 Msa0698540:intron 20.0%
!! AATTTAGTTGTTCTATTAGA+TGG + chr4_4:68901905-68901924 None:intergenic 20.0%
!! TTAAAACTCAAACATATGTA+TGG - chr4_4:68901962-68901981 Msa0698540:intron 20.0%
!!! TTTATTGACCATAGTTTTGA+TGG + chr4_4:68896985-68897004 None:intergenic 25.0%
! ATCAAAACTATGGTCAATAA+AGG - chr4_4:68896984-68897003 Msa0698540:three_prime_UTR 25.0%
!!! TGATTTGCTAGATATATTTG+AGG - chr4_4:68897175-68897194 Msa0698540:three_prime_UTR 25.0%
! TGATGAAGATGGAAAAATTA+TGG - chr4_4:68897202-68897221 Msa0698540:three_prime_UTR 25.0%
! AACATCGTAGTAGTTATAAT+TGG - chr4_4:68897291-68897310 Msa0698540:CDS 25.0%
!! TAAAGAATTTGCTTTCATGA+AGG - chr4_4:68897340-68897359 Msa0698540:CDS 25.0%
! TTCAAACATAAAAGTCGTTT+AGG - chr4_4:68897556-68897575 Msa0698540:intron 25.0%
! TCAAACATAAAAGTCGTTTA+GGG - chr4_4:68897557-68897576 Msa0698540:intron 25.0%
! TATAATTGCTAAGTACTCTT+AGG - chr4_4:68897644-68897663 Msa0698540:intron 25.0%
! ATAATTGCTAAGTACTCTTA+GGG - chr4_4:68897645-68897664 Msa0698540:intron 25.0%
! TTAAGATTAAGAGTTGAGTA+AGG + chr4_4:68897859-68897878 None:intergenic 25.0%
! CAAACAAAAGATAGAAAATG+AGG + chr4_4:68898604-68898623 None:intergenic 25.0%
! CATCATATCTTAAATTTCTG+TGG + chr4_4:68898642-68898661 None:intergenic 25.0%
! CAAGGAAAGATTATAAGTTA+AGG + chr4_4:68898886-68898905 None:intergenic 25.0%
!! TTATAATCTTTCCTTGTTTC+AGG - chr4_4:68898890-68898909 Msa0698540:CDS 25.0%
!!! GTTATTTTGACATTATGTGT+TGG - chr4_4:68898967-68898986 Msa0698540:intron 25.0%
!! GGTGTTACATTTCAAAATTA+AGG - chr4_4:68899033-68899052 Msa0698540:intron 25.0%
!! AATTAAGGAATTTGGAATTG+GGG - chr4_4:68899048-68899067 Msa0698540:intron 25.0%
! AAAATTGATTGCTCAACAAA+GGG + chr4_4:68899418-68899437 None:intergenic 25.0%
! AAAAATTGATTGCTCAACAA+AGG + chr4_4:68899419-68899438 None:intergenic 25.0%
! TATCACAGGACAAAAATTAA+GGG + chr4_4:68899464-68899483 None:intergenic 25.0%
! ATATCACAGGACAAAAATTA+AGG + chr4_4:68899465-68899484 None:intergenic 25.0%
! TATCAATGTTTGAATTCCTA+GGG + chr4_4:68899550-68899569 None:intergenic 25.0%
!! GATTTGATCCTAATTTTCTA+TGG - chr4_4:68899662-68899681 Msa0698540:intron 25.0%
! CAATATACTAATAGTGTGTA+TGG + chr4_4:68899968-68899987 None:intergenic 25.0%
! ATTTATCTGCAGTTTATTGA+AGG - chr4_4:68900350-68900369 Msa0698540:intron 25.0%
! GTATGACAATAAAAAGCTAA+TGG + chr4_4:68900491-68900510 None:intergenic 25.0%
! TATTGTCATACAAGATATAC+TGG - chr4_4:68900500-68900519 Msa0698540:intron 25.0%
!! TTTTGATGAATTTAGTTAGG+AGG - chr4_4:68900559-68900578 Msa0698540:CDS 25.0%
! GTGTTATATTAGAAGAATCA+AGG + chr4_4:68900686-68900705 None:intergenic 25.0%
!!! ACTGCATAACTTTTTTTGAA+CGG - chr4_4:68900704-68900723 Msa0698540:intron 25.0%
!! GCATAATTAAAGAAGGTTTT+GGG - chr4_4:68900961-68900980 Msa0698540:intron 25.0%
!!! ATTTAAAGTTTTCATTGCAC+TGG - chr4_4:68901058-68901077 Msa0698540:intron 25.0%
! TTGTTAATGAAACCATGTTT+AGG - chr4_4:68901247-68901266 Msa0698540:intron 25.0%
!!! ATGGTATTAATTTGATTTGC+AGG - chr4_4:68901610-68901629 Msa0698540:intron 25.0%
! CATATGAATTGTTTAGACTT+TGG - chr4_4:68902108-68902127 Msa0698540:CDS 25.0%
! CTACTATCAATTATCTATAC+TGG - chr4_4:68902137-68902156 Msa0698540:CDS 25.0%
!!! CTAAGTTTAAGCTTTGTTTA+GGG + chr4_4:68902294-68902313 None:intergenic 25.0%
TGTAATATCTTTCGTGTATC+GGG + chr4_4:68896563-68896582 None:intergenic 30.0%
GTGTAATATCTTTCGTGTAT+CGG + chr4_4:68896564-68896583 None:intergenic 30.0%
AAGAAAATCATAACCAAGGT+AGG + chr4_4:68896961-68896980 None:intergenic 30.0%
! TTTTCTTGCCATCAAAACTA+TGG - chr4_4:68896974-68896993 Msa0698540:three_prime_UTR 30.0%
TTATGGCTATGAAGTTACAT+AGG - chr4_4:68897219-68897238 Msa0698540:exon 30.0%
ACAATTCAAGTACATAGCTA+GGG + chr4_4:68897378-68897397 None:intergenic 30.0%
AACAATTCAAGTACATAGCT+AGG + chr4_4:68897379-68897398 None:intergenic 30.0%
! GTTTGAAACAACACGAAAAA+GGG + chr4_4:68897543-68897562 None:intergenic 30.0%
! TGTTTGAAACAACACGAAAA+AGG + chr4_4:68897544-68897563 None:intergenic 30.0%
TTTGTATAACATTTGACGCA+TGG - chr4_4:68897674-68897693 Msa0698540:intron 30.0%
ATTGGTATTACATTAGTACC+AGG - chr4_4:68897704-68897723 Msa0698540:CDS 30.0%
ACATCTTGTTCGTTTAGATA+AGG - chr4_4:68897764-68897783 Msa0698540:intron 30.0%
ATAACATAGATTTCGGATTG+TGG - chr4_4:68897801-68897820 Msa0698540:intron 30.0%
!! TTGTTCTTAAGCTTGCTTTT+TGG - chr4_4:68898044-68898063 Msa0698540:intron 30.0%
CAAAACCAGTGTAAAATATG+TGG + chr4_4:68898103-68898122 None:intergenic 30.0%
!!! CACATATTTTACACTGGTTT+TGG - chr4_4:68898101-68898120 Msa0698540:intron 30.0%
ATTGCTTGAATTTGTATGCT+TGG - chr4_4:68898130-68898149 Msa0698540:intron 30.0%
!!! ACAGTTTTTGAGACAATTGT+TGG - chr4_4:68898198-68898217 Msa0698540:intron 30.0%
!!! TTTTTTATGGCTTTTACCTC+TGG - chr4_4:68898362-68898381 Msa0698540:intron 30.0%
TCATACAAGCATGAAATCAA+AGG + chr4_4:68898543-68898562 None:intergenic 30.0%
!! TCTTCAAGTTTTTCAGAAAG+AGG - chr4_4:68898938-68898957 Msa0698540:intron 30.0%
! ATTAAGGAATTTGGAATTGG+GGG - chr4_4:68899049-68899068 Msa0698540:intron 30.0%
AATGCAGAACAAACATTAGA+CGG + chr4_4:68899181-68899200 None:intergenic 30.0%
CTAATGTTTGTTCTGCATTA+AGG - chr4_4:68899182-68899201 Msa0698540:intron 30.0%
GTATCAATGTTTGAATTCCT+AGG + chr4_4:68899551-68899570 None:intergenic 30.0%
AAGATCTTAACATGCAAAAC+AGG + chr4_4:68899598-68899617 None:intergenic 30.0%
TGCATGTTAAGATCTTTGAT+AGG - chr4_4:68899602-68899621 Msa0698540:intron 30.0%
CAAATCAAGTAGCATGAAAA+AGG + chr4_4:68899648-68899667 None:intergenic 30.0%
AGCATTTGCCATAGAAAATT+AGG + chr4_4:68899673-68899692 None:intergenic 30.0%
AGAGAGACCAAATAGAAAAT+GGG + chr4_4:68899859-68899878 None:intergenic 30.0%
!!! AAAGATTTTGGGTTTGTCTT+TGG - chr4_4:68900038-68900057 Msa0698540:intron 30.0%
TGAACCTAAAACAGAAAAGA+GGG + chr4_4:68900093-68900112 None:intergenic 30.0%
TTGAACCTAAAACAGAAAAG+AGG + chr4_4:68900094-68900113 None:intergenic 30.0%
ATAACGACGATTCTAATGAA+GGG - chr4_4:68900140-68900159 Msa0698540:intron 30.0%
! TGAAGAAAAACAGAGTTTTC+CGG + chr4_4:68900176-68900195 None:intergenic 30.0%
AAGATGAGGAAGATATTCAA+AGG - chr4_4:68900254-68900273 Msa0698540:intron 30.0%
AGATGAGGAAGATATTCAAA+GGG - chr4_4:68900255-68900274 Msa0698540:intron 30.0%
! ACAAATTCTGATAGTGAAGA+TGG - chr4_4:68900389-68900408 Msa0698540:intron 30.0%
! ATACAAGATATACTGGCTAT+GGG - chr4_4:68900507-68900526 Msa0698540:intron 30.0%
AACAAATAGACTCATCTGTT+AGG - chr4_4:68900632-68900651 Msa0698540:intron 30.0%
ACAAATAGACTCATCTGTTA+GGG - chr4_4:68900633-68900652 Msa0698540:intron 30.0%
!!! CTGCATAACTTTTTTTGAAC+GGG - chr4_4:68900705-68900724 Msa0698540:intron 30.0%
!! ATGTTTGTTGTCCTGTAAAT+GGG + chr4_4:68900769-68900788 None:intergenic 30.0%
!! TATGTTTGTTGTCCTGTAAA+TGG + chr4_4:68900770-68900789 None:intergenic 30.0%
GGACAACAAACATAAAACAA+CGG - chr4_4:68900776-68900795 Msa0698540:CDS 30.0%
CTCTAATAAGGATACCAATA+GGG + chr4_4:68900904-68900923 None:intergenic 30.0%
TCTCTAATAAGGATACCAAT+AGG + chr4_4:68900905-68900924 None:intergenic 30.0%
GGGTCTATTATTCTCTAATA+AGG + chr4_4:68900916-68900935 None:intergenic 30.0%
TAATTATGCCGTGTCATATT+CGG + chr4_4:68900950-68900969 None:intergenic 30.0%
! GGCATAATTAAAGAAGGTTT+TGG - chr4_4:68900960-68900979 Msa0698540:intron 30.0%
TGATATTCTAAGTGAACTGT+GGG - chr4_4:68901106-68901125 Msa0698540:intron 30.0%
ACAGATCTTAGATAAACTAC+AGG + chr4_4:68901148-68901167 None:intergenic 30.0%
TTTACAGCATTCCTTGTTAA+CGG + chr4_4:68901449-68901468 None:intergenic 30.0%
! TCCAATTGCATTTTCATCTT+GGG + chr4_4:68901475-68901494 None:intergenic 30.0%
! ATCCAATTGCATTTTCATCT+TGG + chr4_4:68901476-68901495 None:intergenic 30.0%
! CCATTATGGTTTTCATGTAA+AGG + chr4_4:68901594-68901613 None:intergenic 30.0%
CCTTTACATGAAAACCATAA+TGG - chr4_4:68901591-68901610 Msa0698540:intron 30.0%
!! GTATTAATTTGATTTGCAGG+AGG - chr4_4:68901613-68901632 Msa0698540:intron 30.0%
AATTTAGTCGTTCTAACAGA+TGG + chr4_4:68901936-68901955 None:intergenic 30.0%
!!! TGAGTTGTTTTTATATCTCC+AGG - chr4_4:68902023-68902042 Msa0698540:CDS 30.0%
!!! GAGTTGTTTTTATATCTCCA+GGG - chr4_4:68902024-68902043 Msa0698540:CDS 30.0%
TATCAATTATCTATACTGGC+AGG - chr4_4:68902141-68902160 Msa0698540:CDS 30.0%
!! TTCTTCTAGTTCAATACTTG+AGG - chr4_4:68902182-68902201 Msa0698540:CDS 30.0%
!! CCTAAGTTTAAGCTTTGTTT+AGG + chr4_4:68902295-68902314 None:intergenic 30.0%
CCTAAACAAAGCTTAAACTT+AGG - chr4_4:68902292-68902311 Msa0698540:exon 30.0%
AAAGCTTAAACTTAGGCAAT+TGG - chr4_4:68902299-68902318 Msa0698540:five_prime_UTR 30.0%
TCGATATGTGAAAATTGCAG+CGG + chr4_4:68896672-68896691 None:intergenic 35.0%
TTTCCGACTTATCAAACTCT+CGG + chr4_4:68896708-68896727 None:intergenic 35.0%
! ACCTCTCGAAAGATGATTTT+AGG - chr4_4:68896766-68896785 Msa0698540:three_prime_UTR 35.0%
! CCTCTCGAAAGATGATTTTA+GGG - chr4_4:68896767-68896786 Msa0698540:three_prime_UTR 35.0%
!! CAAGTTTTTCAGAACCTTGT+AGG + chr4_4:68896883-68896902 None:intergenic 35.0%
AATCATAACCAAGGTAGGTA+AGG + chr4_4:68896956-68896975 None:intergenic 35.0%
TGGCAAGAAAATCATAACCA+AGG + chr4_4:68896965-68896984 None:intergenic 35.0%
!! ATGTTTTAAGTAGTCACGCT+TGG + chr4_4:68897276-68897295 None:intergenic 35.0%
CGAACAAGATGTAAAAGCAA+GGG + chr4_4:68897756-68897775 None:intergenic 35.0%
ACGAACAAGATGTAAAAGCA+AGG + chr4_4:68897757-68897776 None:intergenic 35.0%
!!! CTTAAGCTTGCTTTTTGGTT+TGG - chr4_4:68898049-68898068 Msa0698540:intron 35.0%
!! TTGGTTTGGACTTTGTAGTT+TGG - chr4_4:68898063-68898082 Msa0698540:intron 35.0%
CCAGTGTAAAATATGTGGAA+GGG + chr4_4:68898098-68898117 None:intergenic 35.0%
ACCAGTGTAAAATATGTGGA+AGG + chr4_4:68898099-68898118 None:intergenic 35.0%
TTGTCTCAAAAACTGTCTCT+GGG + chr4_4:68898194-68898213 None:intergenic 35.0%
ATTGTCTCAAAAACTGTCTC+TGG + chr4_4:68898195-68898214 None:intergenic 35.0%
TGTTGGTATAATTATTCGGC+TGG - chr4_4:68898215-68898234 Msa0698540:intron 35.0%
TTTCTTCATCGTCAATCTAC+AGG + chr4_4:68898408-68898427 None:intergenic 35.0%
!! TGTGATTGATTTTCCGCAAA+TGG - chr4_4:68898435-68898454 Msa0698540:intron 35.0%
GCTCTTACATCTTTGCATTA+CGG + chr4_4:68898474-68898493 None:intergenic 35.0%
AAGGGACATAATACCATACA+AGG + chr4_4:68898502-68898521 None:intergenic 35.0%
AATTGGTACGTAGTATGTAC+TGG - chr4_4:68898713-68898732 Msa0698540:intron 35.0%
! ACTGCTTGGTTTGAGAATAA+TGG - chr4_4:68899004-68899023 Msa0698540:intron 35.0%
! CTGCTTGGTTTGAGAATAAT+GGG - chr4_4:68899005-68899024 Msa0698540:intron 35.0%
AGTCAACTGCTAGATATGTA+AGG + chr4_4:68899110-68899129 None:intergenic 35.0%
AAGGATAGACACAGGAATAT+AGG - chr4_4:68899201-68899220 Msa0698540:intron 35.0%
! GAGAACTGTTTGAGTTATCT+GGG + chr4_4:68899396-68899415 None:intergenic 35.0%
AAAATTAAGGGACAAGACAC+AGG + chr4_4:68899452-68899471 None:intergenic 35.0%
CAAAATGAGCAACTTTGCAT+TGG + chr4_4:68899796-68899815 None:intergenic 35.0%
! CAATGCAAAGTTGCTCATTT+TGG - chr4_4:68899794-68899813 Msa0698540:intron 35.0%
! AACATGGCCCATTTTCTATT+TGG - chr4_4:68899849-68899868 Msa0698540:intron 35.0%
CAGAGAGACCAAATAGAAAA+TGG + chr4_4:68899860-68899879 None:intergenic 35.0%
TTTCTATTTGGTCTCTCTGA+TGG - chr4_4:68899861-68899880 Msa0698540:intron 35.0%
GGACAAATTATCAAGACAAC+TGG + chr4_4:68900072-68900091 None:intergenic 35.0%
! TTGTCCCTCTTTTCTGTTTT+AGG - chr4_4:68900086-68900105 Msa0698540:CDS 35.0%
GATAACGACGATTCTAATGA+AGG - chr4_4:68900139-68900158 Msa0698540:intron 35.0%
!! TGGCTTTGGTAAAAAAGATG+AGG - chr4_4:68900240-68900259 Msa0698540:intron 35.0%
AGGAAGATATTCAAAGGGTA+TGG - chr4_4:68900260-68900279 Msa0698540:intron 35.0%
! AAGATATTCAAAGGGTATGG+TGG - chr4_4:68900263-68900282 Msa0698540:intron 35.0%
TTCTTTACATTTGTCAGAGC+AGG - chr4_4:68900457-68900476 Msa0698540:intron 35.0%
! CATACAAGATATACTGGCTA+TGG - chr4_4:68900506-68900525 Msa0698540:intron 35.0%
CAAATAGACTCATCTGTTAG+GGG - chr4_4:68900634-68900653 Msa0698540:intron 35.0%
CAAAGTTCAAACCCATTTAC+AGG - chr4_4:68900755-68900774 Msa0698540:CDS 35.0%
!! TTGTATATCTAGGCTTTAGG+TGG + chr4_4:68900804-68900823 None:intergenic 35.0%
GGATTGTATATCTAGGCTTT+AGG + chr4_4:68900807-68900826 None:intergenic 35.0%
AGAGAATAATAGACCCAATC+CGG - chr4_4:68900920-68900939 Msa0698540:intron 35.0%
AATTATGCCGTGTCATATTC+GGG + chr4_4:68900949-68900968 None:intergenic 35.0%
TGACACGGCATAATTAAAGA+AGG - chr4_4:68900954-68900973 Msa0698540:intron 35.0%
!!! AAGGTTTTGGGTATTTGCTT+AGG - chr4_4:68900973-68900992 Msa0698540:intron 35.0%
TTTGCTTAGGACATTAGTGT+TGG - chr4_4:68900986-68901005 Msa0698540:intron 35.0%
! ACATTAGTGTTGGAGAACTT+AGG - chr4_4:68900996-68901015 Msa0698540:intron 35.0%
ATAAAGCCTAGAAAGCAAGT+TGG + chr4_4:68901030-68901049 None:intergenic 35.0%
GTGATATTCTAAGTGAACTG+TGG - chr4_4:68901105-68901124 Msa0698540:intron 35.0%
! ATGAAACCATGTTTAGGATG+AGG - chr4_4:68901253-68901272 Msa0698540:intron 35.0%
! TGAAACCATGTTTAGGATGA+GGG - chr4_4:68901254-68901273 Msa0698540:intron 35.0%
ACATGAAAGTCATGGAAAAG+AGG - chr4_4:68901277-68901296 Msa0698540:intron 35.0%
AGATTTGAAGGTGAAAACAG+CGG - chr4_4:68901302-68901321 Msa0698540:intron 35.0%
TTACAGCATTCCTTGTTAAC+GGG + chr4_4:68901448-68901467 None:intergenic 35.0%
TCCCAAGATGAAAATGCAAT+TGG - chr4_4:68901471-68901490 Msa0698540:intron 35.0%
CATGTAAAGGCTAGATAACA+AGG + chr4_4:68901581-68901600 None:intergenic 35.0%
AGGAATTCTCACAAAGACAA+GGG - chr4_4:68901731-68901750 Msa0698540:CDS 35.0%
TAGGTCATCTCAAAATGCTA+AGG - chr4_4:68901757-68901776 Msa0698540:CDS 35.0%
CAACATATTCGAATGACATG+AGG + chr4_4:68901840-68901859 None:intergenic 35.0%
GTCATTCGAATATGTTGAAG+TGG - chr4_4:68901843-68901862 Msa0698540:intron 35.0%
CATATGTATGGAATGTCCTT+CGG - chr4_4:68901974-68901993 Msa0698540:intron 35.0%
!! GTATGAAAGCTGCATTGATT+TGG - chr4_4:68901999-68902018 Msa0698540:CDS 35.0%
AGAGACATAATTATTCTCCC+TGG + chr4_4:68902044-68902063 None:intergenic 35.0%
TCGGGTTAAGTTTCGTGAAT+CGG + chr4_4:68896545-68896564 None:intergenic 40.0%
AGACCGAGAGTTTGATAAGT+CGG - chr4_4:68896702-68896721 Msa0698540:three_prime_UTR 40.0%
CCCTAAAATCATCTTTCGAG+AGG + chr4_4:68896770-68896789 None:intergenic 40.0%
GTTTCTCATGCCCAATTCAA+CGG + chr4_4:68896802-68896821 None:intergenic 40.0%
CACGACTCTACTAAATACGA+TGG - chr4_4:68896924-68896943 Msa0698540:three_prime_UTR 40.0%
!! ATTCTTTTCCAACGCCGATT+TGG + chr4_4:68897031-68897050 None:intergenic 40.0%
! TTTGAGGTTGCTGATGAAGA+TGG - chr4_4:68897191-68897210 Msa0698540:three_prime_UTR 40.0%
GCTATGAAGTTACATAGGCT+TGG - chr4_4:68897224-68897243 Msa0698540:exon 40.0%
CAAATTCTTTAAGCGCAGCA+AGG + chr4_4:68897331-68897350 None:intergenic 40.0%
GACATGTTCTTTGCTTGATC+AGG - chr4_4:68897422-68897441 Msa0698540:intron 40.0%
ACAAGATGAGTCAACTCTGA+TGG - chr4_4:68897603-68897622 Msa0698540:intron 40.0%
! TCTGATGGTGTTGGATATTG+CGG - chr4_4:68897618-68897637 Msa0698540:intron 40.0%
TTGCTAAGTACTCTTAGGGA+TGG - chr4_4:68897649-68897668 Msa0698540:intron 40.0%
TTGACGCATGGTCTATGAAT+TGG - chr4_4:68897686-68897705 Msa0698540:CDS 40.0%
CAAGATGTAAAAGCAAGGGA+CGG + chr4_4:68897752-68897771 None:intergenic 40.0%
AAGAGTTGAGTAAGGCTTAG+TGG + chr4_4:68897851-68897870 None:intergenic 40.0%
GTAAAATATGTGGAAGGGAG+TGG + chr4_4:68898093-68898112 None:intergenic 40.0%
! CCCTTCCACATATTTTACAC+TGG - chr4_4:68898095-68898114 Msa0698540:intron 40.0%
CATCGTCAATCTACAGGAAA+CGG + chr4_4:68898402-68898421 None:intergenic 40.0%
GTAAGAGCTTCTTCCTTGTA+TGG - chr4_4:68898486-68898505 Msa0698540:intron 40.0%
! CGATCAAAGTACCTGAAACA+AGG + chr4_4:68898904-68898923 None:intergenic 40.0%
TGTTCGTGAATTTCACTGCT+TGG - chr4_4:68898990-68899009 Msa0698540:intron 40.0%
! TGGTTTGAGAATAATGGGAG+AGG - chr4_4:68899010-68899029 Msa0698540:intron 40.0%
! GGTTTGAGAATAATGGGAGA+GGG - chr4_4:68899011-68899030 Msa0698540:intron 40.0%
! GTTTGAGAATAATGGGAGAG+GGG - chr4_4:68899012-68899031 Msa0698540:intron 40.0%
TCTGCATTAAGGATAGACAC+AGG - chr4_4:68899193-68899212 Msa0698540:intron 40.0%
! GTTTGAGTTATCTGGGAAAG+AGG + chr4_4:68899389-68899408 None:intergenic 40.0%
! GGAGAACTGTTTGAGTTATC+TGG + chr4_4:68899397-68899416 None:intergenic 40.0%
AATTCCTAGGGATAAGACAC+AGG + chr4_4:68899538-68899557 None:intergenic 40.0%
CAAGTAGCATGAAAAAGGCA+AGG + chr4_4:68899643-68899662 None:intergenic 40.0%
ATTCCTTAACATGTGCCCTT+AGG - chr4_4:68899817-68899836 Msa0698540:intron 40.0%
TTCCTTAACATGTGCCCTTA+GGG - chr4_4:68899818-68899837 Msa0698540:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + chr4_4:68899835-68899854 None:intergenic 40.0%
!!! CAGTGCTGGTTTTCTAGATA+AGG - chr4_4:68900204-68900223 Msa0698540:intron 40.0%
! TGATAGTGAAGATGGTGACT+TGG - chr4_4:68900397-68900416 Msa0698540:intron 40.0%
! GATATACTGGCTATGGGAAA+TGG - chr4_4:68900513-68900532 Msa0698540:intron 40.0%
ACTCGCTGGATTGTATATCT+AGG + chr4_4:68900814-68900833 None:intergenic 40.0%
ACTTCATCCTAGTTTCGTCT+TGG + chr4_4:68900869-68900888 None:intergenic 40.0%
GTCAAAAAGCTCATCCCTAT+TGG - chr4_4:68900887-68900906 Msa0698540:intron 40.0%
! TAGTGTTGGAGAACTTAGGA+AGG - chr4_4:68901000-68901019 Msa0698540:intron 40.0%
! GGATATCCAACTTGCTTTCT+AGG - chr4_4:68901021-68901040 Msa0698540:intron 40.0%
! CTTGCTTTCTAGGCTTTATG+AGG - chr4_4:68901031-68901050 Msa0698540:intron 40.0%
ACTGGATGTGAGATTAAGTG+TGG - chr4_4:68901076-68901095 Msa0698540:intron 40.0%
CTGGATGTGAGATTAAGTGT+GGG - chr4_4:68901077-68901096 Msa0698540:intron 40.0%
GGAAAAGAGGAGAGATTTGA+AGG - chr4_4:68901290-68901309 Msa0698540:intron 40.0%
TGAAAACAGCGGATCTGAAA+AGG - chr4_4:68901313-68901332 Msa0698540:intron 40.0%
ATTCCTTGTTAACGGGGATA+CGG + chr4_4:68901441-68901460 None:intergenic 40.0%
TACAGCATTCCTTGTTAACG+GGG + chr4_4:68901447-68901466 None:intergenic 40.0%
!! ATTTGATTTGCAGGAGGAAG+TGG - chr4_4:68901619-68901638 Msa0698540:intron 40.0%
!! TTTGATTTGCAGGAGGAAGT+GGG - chr4_4:68901620-68901639 Msa0698540:intron 40.0%
CTTGTCTTTGTGAGAATTCC+TGG + chr4_4:68901732-68901751 None:intergenic 40.0%
CAGGAATTCTCACAAAGACA+AGG - chr4_4:68901730-68901749 Msa0698540:CDS 40.0%
AATTCTCACAAAGACAAGGG+TGG - chr4_4:68901734-68901753 Msa0698540:CDS 40.0%
TTCAAATGCAAATGAGCAGC+TGG - chr4_4:68901780-68901799 Msa0698540:CDS 40.0%
GAACGACAGAATACATAGGA+AGG + chr4_4:68902081-68902100 None:intergenic 40.0%
GCAAGAACGACAGAATACAT+AGG + chr4_4:68902085-68902104 None:intergenic 40.0%
GCAAAAACCAGCAGAAGTTT+CGG + chr4_4:68902265-68902284 None:intergenic 40.0%
!! TAAGCTTTGTTTAGGGCCTT+AGG + chr4_4:68902287-68902306 None:intergenic 40.0%
CAAGTTTCACTTGTTCAGCT+GGG + chr4_4:68902366-68902385 None:intergenic 40.0%
TCAAGTTTCACTTGTTCAGC+TGG + chr4_4:68902367-68902386 None:intergenic 40.0%
CGGGTTAAGTTTCGTGAATC+GGG + chr4_4:68896544-68896563 None:intergenic 45.0%
GTGAAAATTGCAGCGGATGA+CGG + chr4_4:68896665-68896684 None:intergenic 45.0%
TTCGGTCGATAAGTTCAGCA+GGG + chr4_4:68896836-68896855 None:intergenic 45.0%
ATTCGGTCGATAAGTTCAGC+AGG + chr4_4:68896837-68896856 None:intergenic 45.0%
! CATGTTTGAGACGAGCGATT+CGG + chr4_4:68896854-68896873 None:intergenic 45.0%
! ATCGGCGTTGGAAAAGAATC+TGG - chr4_4:68897032-68897051 Msa0698540:three_prime_UTR 45.0%
GATCAGGCTTTGCAAACACA+TGG - chr4_4:68897438-68897457 Msa0698540:intron 45.0%
ACATGGATTTCCTGTTCCAG+AGG - chr4_4:68897455-68897474 Msa0698540:intron 45.0%
! GTAATCATGTCGCTTGTCCA+AGG - chr4_4:68897501-68897520 Msa0698540:intron 45.0%
GCACTTACAGAGGATAACCT+TGG + chr4_4:68897521-68897540 None:intergenic 45.0%
!! ACGAAAAAGGGCACTTACAG+AGG + chr4_4:68897531-68897550 None:intergenic 45.0%
! TGAGTCAACTCTGATGGTGT+TGG - chr4_4:68897609-68897628 Msa0698540:intron 45.0%
GTCAGATCTCAAGCATATCC+TGG + chr4_4:68897725-68897744 None:intergenic 45.0%
TGTAAAAGCAAGGGACGGAA+TGG + chr4_4:68897747-68897766 None:intergenic 45.0%
AAATATGTGGAAGGGAGTGG+TGG + chr4_4:68898090-68898109 None:intergenic 45.0%
ATTATTCGGCTGGCAGAACA+TGG - chr4_4:68898225-68898244 Msa0698540:intron 45.0%
TAATGCTGACAAGTGCACAC+AGG + chr4_4:68898302-68898321 None:intergenic 45.0%
CAAACATTAGACGGCACAGA+AGG + chr4_4:68899172-68899191 None:intergenic 45.0%
GTTATCTGGGAAAGAGGAGA+TGG + chr4_4:68899383-68899402 None:intergenic 45.0%
TAGTCCTGTGTCTTATCCCT+AGG - chr4_4:68899531-68899550 Msa0698540:intron 45.0%
! AATGCTAACTTGTGCCCTTG+AGG - chr4_4:68899687-68899706 Msa0698540:intron 45.0%
! ATGCTAACTTGTGCCCTTGA+GGG - chr4_4:68899688-68899707 Msa0698540:intron 45.0%
TCCTTAACATGTGCCCTCAA+GGG + chr4_4:68899704-68899723 None:intergenic 45.0%
TTCCTTAACATGTGCCCTCA+AGG + chr4_4:68899705-68899724 None:intergenic 45.0%
!! CCATGTTAACTTGTGCCCTA+AGG + chr4_4:68899836-68899855 None:intergenic 45.0%
CCTTAGGGCACAAGTTAACA+TGG - chr4_4:68899833-68899852 Msa0698540:intron 45.0%
CGATTCTAATGAAGGGAGAG+AGG - chr4_4:68900147-68900166 Msa0698540:intron 45.0%
TCTTCAATAGACAGCAGTGC+TGG - chr4_4:68900190-68900209 Msa0698540:intron 45.0%
!! GATAAGGAACTTGCTGCTAG+TGG - chr4_4:68900220-68900239 Msa0698540:intron 45.0%
TCTGCAGTTTATTGAAGGCG+AGG - chr4_4:68900355-68900374 Msa0698540:intron 45.0%
CAATCCAGCGAGTTAGTACA+AGG - chr4_4:68900821-68900840 Msa0698540:CDS 45.0%
TCATCCTAGTTTCGTCTTGG+AGG + chr4_4:68900866-68900885 None:intergenic 45.0%
CATGTCCCTCATCCTAAACA+TGG + chr4_4:68901262-68901281 None:intergenic 45.0%
GATGAGGGACATGAAAGTCA+TGG - chr4_4:68901269-68901288 Msa0698540:intron 45.0%
AAAGGAAGATGCAAGCGACA+CGG - chr4_4:68901331-68901350 Msa0698540:intron 45.0%
TTACCGTATCCCCGTTAACA+AGG - chr4_4:68901435-68901454 Msa0698540:intron 45.0%
TGCTATAGCATCAGCTCGTA+GGG - chr4_4:68901688-68901707 Msa0698540:CDS 45.0%
GAGCAGCTGGTGAGTTATAT+TGG - chr4_4:68901793-68901812 Msa0698540:CDS 45.0%
TGACATGAGGTCAATCGCAT+GGG + chr4_4:68901827-68901846 None:intergenic 45.0%
ATGACATGAGGTCAATCGCA+TGG + chr4_4:68901828-68901847 None:intergenic 45.0%
ATGTATGGAATGTCCTTCGG+AGG - chr4_4:68901977-68901996 Msa0698540:intron 45.0%
AAAACCAGCAGAAGTTTCGG+AGG + chr4_4:68902262-68902281 None:intergenic 45.0%
!!! CTTCTGCTGGTTTTTGCCTA+AGG - chr4_4:68902268-68902287 Msa0698540:CDS 45.0%
!! AAACTTAGGCAATTGGCTCG+CGG - chr4_4:68902306-68902325 Msa0698540:five_prime_UTR 45.0%
TGTTCAGCTGGGTTCACAAA+AGG + chr4_4:68902355-68902374 None:intergenic 45.0%
!! TTATATTTCATAATTTAATT+AGG + chr4_4:68897913-68897932 None:intergenic 5.0%
!!! TAATTTCTATTATTTTTATT+AGG - chr4_4:68901359-68901378 Msa0698540:intron 5.0%
GTTCTCACCGCCGTTGAATT+GGG - chr4_4:68896789-68896808 Msa0698540:three_prime_UTR 50.0%
TCTCATGCCCAATTCAACGG+CGG + chr4_4:68896799-68896818 None:intergenic 50.0%
GTTCAGCAGGGACAATTTCG+TGG + chr4_4:68896824-68896843 None:intergenic 50.0%
CGAATCGCTCGTCTCAAACA+TGG - chr4_4:68896852-68896871 Msa0698540:three_prime_UTR 50.0%
ATCGCTCGTCTCAAACATGG+TGG - chr4_4:68896855-68896874 Msa0698540:three_prime_UTR 50.0%
CAAACATGGTGGCACCTACA+AGG - chr4_4:68896866-68896885 Msa0698540:three_prime_UTR 50.0%
GGATTTCGCCTTACCTACCT+TGG - chr4_4:68896945-68896964 Msa0698540:three_prime_UTR 50.0%
!! AAAGGTGTCTTCGTCTCCGT+TGG - chr4_4:68897002-68897021 Msa0698540:three_prime_UTR 50.0%
ATTTCCTGTTCCAGAGGCTG+TGG - chr4_4:68897461-68897480 Msa0698540:intron 50.0%
CGATTATGTTCCACAGCCTC+TGG + chr4_4:68897474-68897493 None:intergenic 50.0%
GTTCTGCAAATGCAGCGTTC+AGG - chr4_4:68898152-68898171 Msa0698540:intron 50.0%
GGAGTCAGATTGTAAGCCAG+AGG + chr4_4:68898381-68898400 None:intergenic 50.0%
TGCGACACAGACACCATTTG+CGG + chr4_4:68898451-68898470 None:intergenic 50.0%
AGAGGAGATGGAGGAAAGGA+GGG + chr4_4:68899371-68899390 None:intergenic 50.0%
AAGAGGAGATGGAGGAAAGG+AGG + chr4_4:68899372-68899391 None:intergenic 50.0%
GGAAAGAGGAGATGGAGGAA+AGG + chr4_4:68899375-68899394 None:intergenic 50.0%
ATCTGGGAAAGAGGAGATGG+AGG + chr4_4:68899380-68899399 None:intergenic 50.0%
! TGCCCTAAGGGCACATGTTA+AGG + chr4_4:68899823-68899842 None:intergenic 50.0%
AATGAAGGGAGAGAGGAAGC+CGG - chr4_4:68900154-68900173 Msa0698540:intron 50.0%
!! GAACTTGCTGCTAGTGGCTT+TGG - chr4_4:68900226-68900245 Msa0698540:intron 50.0%
GCAGTTTATTGAAGGCGAGG+TGG - chr4_4:68900358-68900377 Msa0698540:intron 50.0%
GGCATCAGCAGTTTGCAGAA+AGG + chr4_4:68900664-68900683 None:intergenic 50.0%
GAGTTAGTACAAGGCCTCGA+TGG - chr4_4:68900830-68900849 Msa0698540:CDS 50.0%
TCCACCTCCAAGACGAAACT+AGG - chr4_4:68900859-68900878 Msa0698540:intron 50.0%
TCCTAGTTTCGTCTTGGAGG+TGG + chr4_4:68900863-68900882 None:intergenic 50.0%
CATATTCGGGTCACCGGATT+GGG + chr4_4:68900936-68900955 None:intergenic 50.0%
TCATATTCGGGTCACCGGAT+TGG + chr4_4:68900937-68900956 None:intergenic 50.0%
GTGCTATAGCATCAGCTCGT+AGG - chr4_4:68901687-68901706 Msa0698540:CDS 50.0%
GCTATAGCATCAGCTCGTAG+GGG - chr4_4:68901689-68901708 Msa0698540:CDS 50.0%
GACGGAAGAAACTTGGATCC+AGG - chr4_4:68901711-68901730 Msa0698540:CDS 50.0%
CTCACAAAGACAAGGGTGGT+AGG - chr4_4:68901738-68901757 Msa0698540:CDS 50.0%
TGCAGCTTTCATACCTCCGA+AGG + chr4_4:68901993-68902012 None:intergenic 50.0%
TGTTCCTCCGAAACTTCTGC+TGG - chr4_4:68902255-68902274 Msa0698540:CDS 50.0%
GAAGCGGTGGTGTAAGTCGT+CGG + chr4_4:68896637-68896656 None:intergenic 55.0%
!! ATTGCAGCGGATGACGGAGA+AGG + chr4_4:68896659-68896678 None:intergenic 55.0%
GGTTCTCACCGCCGTTGAAT+TGG - chr4_4:68896788-68896807 Msa0698540:three_prime_UTR 55.0%
GTCTCCGTTGGTCGCCAAAT+CGG - chr4_4:68897014-68897033 Msa0698540:three_prime_UTR 55.0%
!! AACGCCGATTTGGCGACCAA+CGG + chr4_4:68897021-68897040 None:intergenic 55.0%
CTCACGTGAGGGTCATACAC+TGG + chr4_4:68897097-68897116 None:intergenic 55.0%
ATGACACGACGCTCACGTGA+GGG + chr4_4:68897108-68897127 None:intergenic 55.0%
AATGACACGACGCTCACGTG+AGG + chr4_4:68897109-68897128 None:intergenic 55.0%
!! TGTTCCACAGCCTCTGGAAC+AGG + chr4_4:68897468-68897487 None:intergenic 55.0%
! GCCCTTGAGGGCACATGTTA+AGG - chr4_4:68899700-68899719 Msa0698540:intron 55.0%
! GAGGCCTTGTACTAACTCGC+TGG + chr4_4:68900828-68900847 None:intergenic 55.0%
!! GAGGTGGAAGAGTACCATCG+AGG + chr4_4:68900847-68900866 None:intergenic 55.0%
CCGTGTCATATTCGGGTCAC+CGG + chr4_4:68900942-68900961 None:intergenic 55.0%
CCGGTGACCCGAATATGACA+CGG - chr4_4:68900939-68900958 Msa0698540:intron 55.0%
TAGCATCAGCTCGTAGGGGA+CGG - chr4_4:68901693-68901712 Msa0698540:CDS 55.0%
CGTAGGGGACGGAAGAAACT+TGG - chr4_4:68901704-68901723 Msa0698540:CDS 55.0%
TGGTGTAAGTCGTCGGACGG+CGG + chr4_4:68896630-68896649 None:intergenic 60.0%
CGGTGGTGTAAGTCGTCGGA+CGG + chr4_4:68896633-68896652 None:intergenic 60.0%
!! GATGACGGAGAAGGAAGCGG+TGG + chr4_4:68896650-68896669 None:intergenic 60.0%
!! GCGGATGACGGAGAAGGAAG+CGG + chr4_4:68896653-68896672 None:intergenic 60.0%
GTTGGTCGCCAAATCGGCGT+TGG - chr4_4:68897020-68897039 Msa0698540:three_prime_UTR 60.0%
GTGTAAGTCGTCGGACGGCG+GGG + chr4_4:68896628-68896647 None:intergenic 65.0%
GGTGTAAGTCGTCGGACGGC+GGG + chr4_4:68896629-68896648 None:intergenic 65.0%
AGTCGTCGGACGGCGGGGAC+TGG + chr4_4:68896623-68896642 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 68896541 68902492 68896541 ID=Msa0698540;Name=Msa0698540
chr4_4 mRNA 68896541 68902492 68896541 ID=Msa0698540-mRNA-1;Parent=Msa0698540;Name=Msa0698540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=197|1|1|1|1|1|10|687|454
chr4_4 exon 68896541 68897401 68896541 ID=Msa0698540-mRNA-1:exon:20577;Parent=Msa0698540-mRNA-1
chr4_4 exon 68897681 68897764 68897681 ID=Msa0698540-mRNA-1:exon:20576;Parent=Msa0698540-mRNA-1
chr4_4 exon 68898555 68898671 68898555 ID=Msa0698540-mRNA-1:exon:20575;Parent=Msa0698540-mRNA-1
chr4_4 exon 68898757 68898925 68898757 ID=Msa0698540-mRNA-1:exon:20574;Parent=Msa0698540-mRNA-1
chr4_4 exon 68900074 68900121 68900074 ID=Msa0698540-mRNA-1:exon:20573;Parent=Msa0698540-mRNA-1
chr4_4 exon 68900548 68900621 68900548 ID=Msa0698540-mRNA-1:exon:20572;Parent=Msa0698540-mRNA-1
chr4_4 exon 68900749 68900866 68900749 ID=Msa0698540-mRNA-1:exon:20571;Parent=Msa0698540-mRNA-1
chr4_4 exon 68901501 68901589 68901501 ID=Msa0698540-mRNA-1:exon:20570;Parent=Msa0698540-mRNA-1
chr4_4 exon 68901672 68901847 68901672 ID=Msa0698540-mRNA-1:exon:20569;Parent=Msa0698540-mRNA-1
chr4_4 exon 68901980 68902492 68901980 ID=Msa0698540-mRNA-1:exon:20568;Parent=Msa0698540-mRNA-1
chr4_4 five_prime_UTR 68902296 68902492 68902296 ID=Msa0698540-mRNA-1:five_prime_utr;Parent=Msa0698540-mRNA-1
chr4_4 CDS 68901980 68902295 68901980 ID=Msa0698540-mRNA-1:cds;Parent=Msa0698540-mRNA-1
chr4_4 CDS 68901672 68901847 68901672 ID=Msa0698540-mRNA-1:cds;Parent=Msa0698540-mRNA-1
chr4_4 CDS 68901501 68901589 68901501 ID=Msa0698540-mRNA-1:cds;Parent=Msa0698540-mRNA-1
chr4_4 CDS 68900749 68900866 68900749 ID=Msa0698540-mRNA-1:cds;Parent=Msa0698540-mRNA-1
chr4_4 CDS 68900548 68900621 68900548 ID=Msa0698540-mRNA-1:cds;Parent=Msa0698540-mRNA-1
chr4_4 CDS 68900074 68900121 68900074 ID=Msa0698540-mRNA-1:cds;Parent=Msa0698540-mRNA-1
chr4_4 CDS 68898757 68898925 68898757 ID=Msa0698540-mRNA-1:cds;Parent=Msa0698540-mRNA-1
chr4_4 CDS 68898555 68898671 68898555 ID=Msa0698540-mRNA-1:cds;Parent=Msa0698540-mRNA-1
chr4_4 CDS 68897681 68897764 68897681 ID=Msa0698540-mRNA-1:cds;Parent=Msa0698540-mRNA-1
chr4_4 CDS 68897228 68897401 68897228 ID=Msa0698540-mRNA-1:cds;Parent=Msa0698540-mRNA-1
chr4_4 three_prime_UTR 68896541 68897227 68896541 ID=Msa0698540-mRNA-1:three_prime_utr;Parent=Msa0698540-mRNA-1
Gene Sequence

>Msa0698540

ATGAAGCTCGACGTAGATGTTTTGAGATACCTCTCGAAAGATGATTTTAGGGTTCTCACCGCCGTTGAATTGGGCATGAGAAACCACGAAATTGTCCCTGCTGAACTTATCGACCGAATCGCTCGTCTCAAACATGGTGGCACCTACAAGGTTCTGAAAAACTTGCTTAAACACAAGCTGTTGCATCACGACTCTACTAAATACGATGGATTTCGCCTTACCTACCTTGGTTATGATTTTCTTGCCATCAAAACTATGGTCAATAAAGGTGTCTTCGTCTCCGTTGGTCGCCAAATCGGCGTTGGAAAAGAATCTGATATATTTGAGGTTGCTGATGAAGATGGAAAAATTATGGCTATGAAGTTACATAGGCTTGGTAGAGTTTCTTTTAGAGCTGTTAAATCCAAGCGTGACTACTTAAAACATCGTAGTAGTTATAATTGGCTCTATTTATCTCGCCTTGCTGCGCTTAAAGAATTTGCTTTCATGAAGGCTTTGCAAACACATGGATTTCCTGTTCCAGAGGCTGTGGAACATAATCGACATTGTGTAATCATGTCGCTTGTCCAAGGTTATCCTCTCGTTCAGGTGAAGCAGTTACAAAACCCAGAGACAGTTTTTGAGACAATTGTTGGTATAATTATTCGGCTGGCAGAACATGGTCTCATTCATTGTGATTTCAATGAATTTAACATCATGATTGACGATGAAGAAAAAATTACTGTGATTGATTTTCCGCAAATGGTGTCTGTGTCGCACCGTAATGCAAAGATGTACTTTGATCGTGATGTTGAATGTATCTTCAAGTTTTTCAGAAAGAGGTTCAATATGACTTTTCAAGAAAGCATAGATGATAACGACGATTCTAATGAAGGGAGAGAGGAAGCCGGAAAACTCTGTTTTTCTTCAATAGACAGCAGTGCTGGTTTTCTAGATAAGGAACTTGCTGCTAGTGGCTTTGGTAAAAAAGATGAGGAAGATATTCAAAGGTTTATTGAAGGCGAGGTGGAGAGTGATACAAATTCTGATAGTGAAGATGGTGACTTGGTGAGAAATCTGAATGAAGCAGACGATTTAAATGTTGATTCTTTACATTTGTCAGAGCAGGATGAGGGACATGAAAGTCATGGAAAAGAGGAGAGATTTGAAGGTGAAAACAGCGGATCTGAAAAGGAAGATGCAAGCGACACGGAGGAAGTGGGAATTGAAGCTGAACTCACAAAGAGCTTGAGTAAGCAAAGACAAAGTGCTATAGCATCAGCTCGTAGGGGACGGAAGAAACTTGGATCCAGGAATTCTCACAAAGACAAGGGTGGTAGGTCATCTCAAAATGCTAAGGTTCAAATGCAAATGAGCAGCTGGTGA

Protein sequence

>Msa0698540

MKLDVDVLRYLSKDDFRVLTAVELGMRNHEIVPAELIDRIARLKHGGTYKVLKNLLKHKLLHHDSTKYDGFRLTYLGYDFLAIKTMVNKGVFVSVGRQIGVGKESDIFEVADEDGKIMAMKLHRLGRVSFRAVKSKRDYLKHRSSYNWLYLSRLAALKEFAFMKALQTHGFPVPEAVEHNRHCVIMSLVQGYPLVQVKQLQNPETVFETIVGIIIRLAEHGLIHCDFNEFNIMIDDEEKITVIDFPQMVSVSHRNAKMYFDRDVECIFKFFRKRFNMTFQESIDDNDDSNEGREEAGKLCFSSIDSSAGFLDKELAASGFGKKDEEDIQRFIEGEVESDTNSDSEDGDLVRNLNEADDLNVDSLHLSEQDEGHESHGKEERFEGENSGSEKEDASDTEEVGIEAELTKSLSKQRQSAIASARRGRKKLGSRNSHKDKGGRSSQNAKVQMQMSSW*