AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129730 MtrunA17_Chr7g0274621 97.765 358 8 0 1 358 1 358 0.0 711
Msa1129730 MtrunA17_Chr1g0190251 82.081 346 62 0 1 346 67 412 0.0 576
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129730 AT1G08630.2 73.639 349 92 0 1 349 1 349 0.0 551
Msa1129730 AT1G08630.3 73.639 349 92 0 1 349 1 349 0.0 551
Msa1129730 AT1G08630.1 73.639 349 92 0 1 349 1 349 0.0 551
Msa1129730 AT1G08630.4 73.639 349 92 0 1 349 1 349 0.0 551
Msa1129730 AT1G08630.6 73.639 349 92 0 1 349 1 349 0.0 551
Msa1129730 AT3G04520.3 74.419 344 88 0 4 347 8 351 0.0 536
Msa1129730 AT3G04520.1 74.419 344 88 0 4 347 8 351 0.0 536
Msa1129730 AT3G04520.2 74.419 344 87 1 4 347 8 350 0.0 531
Msa1129730 AT1G08630.5 71.633 349 85 1 1 349 1 335 0.0 523
Msa1129730 AT1G08630.7 73.636 330 87 0 20 349 1 330 0.0 521

Find 97 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAACAATGAAGTGCTTTA+TGG 0.169459 7_3:+81694421 Msa1129730:three_prime_UTR
ATACACTTTGTCGTGCTTTC+AGG 0.173516 7_3:+81694112 Msa1129730:CDS
CTACAAAATACTTACAATAT+TGG 0.205905 7_3:-81693735 None:intergenic
TCATTATTTCTAACTGTTCT+TGG 0.215838 7_3:-81691764 None:intergenic
TTCAGTTGTGTGAATAAGTA+TGG 0.256450 7_3:+81694311 Msa1129730:three_prime_UTR
GCACATCGCTATCTGATATT+TGG 0.274562 7_3:-81694088 None:intergenic
TTTGTAACACAAATAAAATA+TGG 0.289486 7_3:+81694347 Msa1129730:three_prime_UTR
TTAAATCAAGCAGACCAATT+TGG 0.289912 7_3:-81690758 None:intergenic
AACCACAAGGCTCATTTGTT+TGG 0.308683 7_3:+81691856 Msa1129730:CDS
ATTGAAATTGAAGAGAATTC+AGG 0.311218 7_3:+81693853 Msa1129730:CDS
GCCGGAGGACCAAATGAAAA+TGG 0.327784 7_3:+81694234 Msa1129730:CDS
GGATAAACAAGCTCCCCTTT+TGG 0.339653 7_3:-81691833 None:intergenic
CATATTCATATTTATGAGAA+TGG 0.341156 7_3:+81691713 Msa1129730:CDS
TCCAAGGACTTAGAAGAATA+TGG 0.358787 7_3:+81693895 Msa1129730:CDS
CAATGCATTTCAGTCCAAAT+TGG 0.362325 7_3:+81690744 Msa1129730:five_prime_UTR
GAAGAGATGGCAAAGATAAC+TGG 0.383719 7_3:+81691584 Msa1129730:CDS
AGTGAACAAGCACAGATATA+AGG 0.384763 7_3:-81691649 None:intergenic
GGATTGAAGCTTCACATTGA+TGG 0.392047 7_3:+81692463 Msa1129730:CDS
ATGTTGCAGCGTGCGGTTGC+CGG 0.393302 7_3:+81694216 Msa1129730:intron
GCCATATTCTTCTAAGTCCT+TGG 0.397824 7_3:-81693896 None:intergenic
AGAGGGAGTGAAGTAATTCT+TGG 0.400194 7_3:+81691680 Msa1129730:CDS
GTTTGCTTATCTAAAGGTAT+TGG 0.427009 7_3:+81693095 Msa1129730:CDS
AGGTTTAATTCATAATTTAT+CGG 0.430134 7_3:+81694382 Msa1129730:three_prime_UTR
TCCTTGGATAGCTTTGCTGC+TGG 0.432710 7_3:-81693880 None:intergenic
CTTTGTTTCTTTAGCAAAGT+GGG 0.433429 7_3:+81694467 Msa1129730:three_prime_UTR
CCAGTTGGATCTGTAATTGT+TGG 0.446162 7_3:+81693122 Msa1129730:CDS
TTTGTCCCATCAGGCACTAT+GGG 0.452519 7_3:+81691623 Msa1129730:CDS
GATTAGGTTTGCTTATCTAA+AGG 0.460763 7_3:+81693089 Msa1129730:intron
ATTTGTTTGGAAAATTCTCA+TGG 0.463399 7_3:+81691869 Msa1129730:CDS
TGTGTTACAAACAAAACAAA+AGG 0.466316 7_3:-81694335 None:intergenic
GAGGTCGATGATGATGTTCT+TGG 0.472967 7_3:+81691533 Msa1129730:CDS
GTTGAATATACAGAGAGAGT+TGG 0.482578 7_3:+81692421 Msa1129730:CDS
ACAGTTAGAAATAATGAAGA+TGG 0.487457 7_3:+81691770 Msa1129730:CDS
TAACTAGGACAGTGGATCTT+CGG 0.488854 7_3:+81691456 Msa1129730:CDS
TGAAACAATGCGAGTTGCTA+TGG 0.491610 7_3:+81691502 Msa1129730:CDS
TACCTTGGTTATAAAGCTGT+TGG 0.496036 7_3:-81693147 None:intergenic
TCTTCTAAGCGTAAACAAGA+AGG 0.503667 7_3:-81691563 None:intergenic
AATGGAGGCATTGCAACCCT+TGG 0.505718 7_3:+81691731 Msa1129730:CDS
CTTGTTCACTGCGACATAAG+AGG 0.507878 7_3:+81691662 Msa1129730:CDS
GGAGGCATTGCAACCCTTGG+AGG 0.509812 7_3:+81691734 Msa1129730:CDS
CTGTCTCATTCCACCACCTA+AGG 0.510563 7_3:-81693284 None:intergenic
GGCATCCTTCTCATGCCAAT+CGG 0.513035 7_3:+81693916 Msa1129730:CDS
CGCTATCTGATATTTGGTGG+TGG 0.515490 7_3:-81694082 None:intergenic
CATGGATATTGATTTGATTG+AGG 0.516490 7_3:+81691796 Msa1129730:CDS
GCAACTCGCATTGTTTCAGT+TGG 0.519214 7_3:-81691497 None:intergenic
TTCTTGGATGTACACCTCCA+AGG 0.519508 7_3:-81691748 None:intergenic
CCAACAATTACAGATCCAAC+TGG 0.520070 7_3:-81693122 None:intergenic
CAAAATGGTAACTAGGACAG+TGG 0.520303 7_3:+81691448 Msa1129730:exon
CTGCAATTAGAGATCCAAAA+GGG 0.526811 7_3:+81691819 Msa1129730:CDS
CACTTGGTGTTCCTGTGGAT+AGG 0.527788 7_3:+81692620 Msa1129730:CDS
AGAAGGCTCAGAAAGACCTT+AGG 0.529362 7_3:+81693268 Msa1129730:CDS
CATCGCTATCTGATATTTGG+TGG 0.529995 7_3:-81694085 None:intergenic
CTTAGGTGGTGGAATGAGAC+AGG 0.531990 7_3:+81693285 Msa1129730:CDS
TCAGGCACTTGGTGTTCCTG+TGG 0.542119 7_3:+81692615 Msa1129730:intron
TTGCAGACAAAATGGTAACT+AGG 0.544552 7_3:+81691441 Msa1129730:intron
TCTTGGATGTACACCTCCAA+GGG 0.546880 7_3:-81691747 None:intergenic
AAATATGGAGCATAGTAAGA+AGG 0.552340 7_3:+81694362 Msa1129730:three_prime_UTR
CTCAGAAAGACCTTAGGTGG+TGG 0.554851 7_3:+81693274 Msa1129730:CDS
CTCAATCAAATCAATATCCA+TGG 0.555497 7_3:-81691795 None:intergenic
TGAAATCAAAGGACTGAGAG+TGG 0.556209 7_3:+81693694 Msa1129730:CDS
TCTTTGTTTCTTTAGCAAAG+TGG 0.556806 7_3:+81694466 Msa1129730:three_prime_UTR
AAAGGTATTGGTGCTCCAGT+TGG 0.559792 7_3:+81693107 Msa1129730:CDS
AATATTGGTTTCCACAGAAG+AGG 0.561141 7_3:-81693720 None:intergenic
TTTACGCTTAGAAGAAGAGA+TGG 0.562019 7_3:+81691571 Msa1129730:CDS
GGTTCCCCATAGTGCCTGAT+GGG 0.562284 7_3:-81691628 None:intergenic
GATGGATTGAATGAAATCAA+AGG 0.567749 7_3:+81693683 Msa1129730:intron
ATATACAGAGAGAGTTGGAG+AGG 0.569205 7_3:+81692426 Msa1129730:CDS
AACTGAAAGGCATCTACCAC+CGG 0.571112 7_3:-81692401 None:intergenic
TTGGACTGAAATGCATTGCA+TGG 0.573672 7_3:-81690739 None:intergenic
AGGTTCCCCATAGTGCCTGA+TGG 0.574535 7_3:-81691629 None:intergenic
TCATGCCAATCGGATCATCA+AGG 0.575646 7_3:+81693926 Msa1129730:CDS
AAACAAATGAGCCTTGTGGT+TGG 0.579817 7_3:-81691854 None:intergenic
GGTGGTGGAATGAGACAGGT+TGG 0.583127 7_3:+81693289 Msa1129730:CDS
AGCGTAAACAAGAAGGGTCG+CGG 0.584966 7_3:-81691556 None:intergenic
TTCCAACAGCTTTATAACCA+AGG 0.590972 7_3:+81693145 Msa1129730:CDS
GCTGCAATTAGAGATCCAAA+AGG 0.591600 7_3:+81691818 Msa1129730:CDS
CTTCTAAGCGTAAACAAGAA+GGG 0.596464 7_3:-81691562 None:intergenic
GGAGAGGTTGCTAAGAAGCA+CGG 0.596469 7_3:+81692442 Msa1129730:CDS
CAAGACCTTGATGATCCGAT+TGG 0.596889 7_3:-81693931 None:intergenic
ATTCATATTTATGAGAATGG+AGG 0.597452 7_3:+81691716 Msa1129730:CDS
TTCCAAACAAATGAGCCTTG+TGG 0.608620 7_3:-81691858 None:intergenic
TTGTTCACTGCGACATAAGA+GGG 0.608669 7_3:+81691663 Msa1129730:CDS
TGTGGATAGGCTTGTTCGAG+CGG 0.608773 7_3:+81692633 Msa1129730:CDS
TCCAGCAGCAAAGCTATCCA+AGG 0.609285 7_3:+81693879 Msa1129730:CDS
AGGCTCAGAAAGACCTTAGG+TGG 0.612425 7_3:+81693271 Msa1129730:CDS
TTTCCTGAATGCAGCACCGG+TGG 0.617194 7_3:+81692385 Msa1129730:intron
GAGAGTGGATACCTCTTCTG+TGG 0.618793 7_3:+81693709 Msa1129730:CDS
GCTCGAACAAGCCTATCCAC+AGG 0.622305 7_3:-81692631 None:intergenic
TGGACTGAAATGCATTGCAT+GGG 0.623621 7_3:-81690738 None:intergenic
TCTCTGTATATTCAACTGAA+AGG 0.625952 7_3:-81692414 None:intergenic
ATGATCCGATTGGCATGAGA+AGG 0.633762 7_3:-81693921 None:intergenic
AAATAATGAAGATGGAACCA+TGG 0.634516 7_3:+81691778 Msa1129730:CDS
CAACAAGTGCAGCTGCACAA+AGG 0.642170 7_3:-81693315 None:intergenic
TTGTCCCATCAGGCACTATG+GGG 0.644998 7_3:+81691624 Msa1129730:CDS
AGCTTGTTTATCCAACCACA+AGG 0.653076 7_3:+81691843 Msa1129730:CDS
AGTTGCTATGGCAAACGCTG+AGG 0.668418 7_3:+81691514 Msa1129730:CDS
TGCAATTAGAGATCCAAAAG+GGG 0.670578 7_3:+81691820 Msa1129730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATACTAATAATAATAAGT+TGG + chr7_3:81690956-81690975 Msa1129730:intron 10.0%
!! TTAACTTTACATTATTAAAA+AGG - chr7_3:81692301-81692320 None:intergenic 10.0%
!!! ACTAATTCATTTTATAACTA+AGG + chr7_3:81692245-81692264 Msa1129730:intron 15.0%
!! CTTTGAATATATATATGATT+AGG + chr7_3:81693073-81693092 Msa1129730:intron 15.0%
!! GAGTAAATTACTTTAATAAA+AGG - chr7_3:81693999-81694018 None:intergenic 15.0%
!!! TATATTTCTTTTCTTTTTCT+TGG + chr7_3:81694163-81694182 Msa1129730:intron 15.0%
!! TTTGTAACACAAATAAAATA+TGG + chr7_3:81694347-81694366 Msa1129730:three_prime_UTR 15.0%
!! AGGTTTAATTCATAATTTAT+CGG + chr7_3:81694382-81694401 Msa1129730:three_prime_UTR 15.0%
!! AATTAGTTGGATATAGTTAA+AGG + chr7_3:81690917-81690936 Msa1129730:intron 20.0%
!!! TTTTGTTATAAGCTTTAAGT+TGG + chr7_3:81691139-81691158 Msa1129730:intron 20.0%
!! AAGACCTGAATATAATTTAA+AGG + chr7_3:81691308-81691327 Msa1129730:intron 20.0%
!! ACTACCTTTAAATTATATTC+AGG - chr7_3:81691315-81691334 None:intergenic 20.0%
!! TGAATATAATTTAAAGGTAG+TGG + chr7_3:81691314-81691333 Msa1129730:intron 20.0%
!! CATATTCATATTTATGAGAA+TGG + chr7_3:81691713-81691732 Msa1129730:CDS 20.0%
!! TGTGTAGAAAATGTAAATAA+TGG - chr7_3:81692137-81692156 None:intergenic 20.0%
!! ATGTCAATACTTATTCTTAT+TGG + chr7_3:81692915-81692934 Msa1129730:intron 20.0%
!! ATTACCAAATTCAAATCAAA+AGG + chr7_3:81693021-81693040 Msa1129730:intron 20.0%
!!! ATAACCTTTTGATTTGAATT+TGG - chr7_3:81693028-81693047 None:intergenic 20.0%
!!! GTATGTATATATGCTATTTT+AGG + chr7_3:81693243-81693262 Msa1129730:intron 20.0%
!!! TTTTTGTGTCTTTATTTGAT+AGG - chr7_3:81693422-81693441 None:intergenic 20.0%
!!! ATTATTATCAGTTTTGTGTT+TGG - chr7_3:81693449-81693468 None:intergenic 20.0%
!! GTTAGAGGAAAAAATTTAAA+GGG - chr7_3:81693653-81693672 None:intergenic 20.0%
!! AGTTAGAGGAAAAAATTTAA+AGG - chr7_3:81693654-81693673 None:intergenic 20.0%
!! CTACAAAATACTTACAATAT+TGG - chr7_3:81693738-81693757 None:intergenic 20.0%
!! CTTCAATTTCAATATATATC+TGG - chr7_3:81693846-81693865 None:intergenic 20.0%
! GTTAAAGGTAGTTTACAAAT+TGG + chr7_3:81690932-81690951 Msa1129730:intron 25.0%
!!! TTTTTTTTTTAAACCGCACA+TGG - chr7_3:81691081-81691100 None:intergenic 25.0%
!! TTTTCATAAGCTAAGAACTA+TGG + chr7_3:81691199-81691218 Msa1129730:intron 25.0%
!! AATTGCTAACTTGATTTGAT+CGG + chr7_3:81691355-81691374 Msa1129730:intron 25.0%
! ATTCATATTTATGAGAATGG+AGG + chr7_3:81691716-81691735 Msa1129730:CDS 25.0%
!!! TCATTATTTCTAACTGTTCT+TGG - chr7_3:81691767-81691786 None:intergenic 25.0%
! ACAGTTAGAAATAATGAAGA+TGG + chr7_3:81691770-81691789 Msa1129730:CDS 25.0%
! ATTTGTTTGGAAAATTCTCA+TGG + chr7_3:81691869-81691888 Msa1129730:CDS 25.0%
!!! TAGTAATGTTTTGTTGGATA+CGG + chr7_3:81691925-81691944 Msa1129730:intron 25.0%
! ATATCGCTGAAATAATAGAA+AGG + chr7_3:81691972-81691991 Msa1129730:intron 25.0%
! AAAGTTAAGAATTCCTTCAA+TGG + chr7_3:81692313-81692332 Msa1129730:intron 25.0%
! ATAATATAGACAACCATTGA+AGG - chr7_3:81692329-81692348 None:intergenic 25.0%
! GTTTATATATACATGATAGC+AGG - chr7_3:81692569-81692588 None:intergenic 25.0%
!!! ACAGAAAATTTTGGTTTTTC+AGG + chr7_3:81692597-81692616 Msa1129730:intron 25.0%
!! TCTTTTACCTTCTCTTTTAT+TGG + chr7_3:81692680-81692699 Msa1129730:intron 25.0%
! ATGTTCCATAGTTAGAAAAA+AGG + chr7_3:81692737-81692756 Msa1129730:intron 25.0%
!!! AACATCCTTTTTTCTAACTA+TGG - chr7_3:81692745-81692764 None:intergenic 25.0%
! TATTCAAAGTAATCACAAGT+TGG - chr7_3:81693062-81693081 None:intergenic 25.0%
!!! ATAACGATTTTGAAATACCT+TGG - chr7_3:81693165-81693184 None:intergenic 25.0%
! TCATTTATAACCACATTTGT+TGG + chr7_3:81693489-81693508 Msa1129730:intron 25.0%
! ATTTCATTCAATCCATCTAA+AGG - chr7_3:81693680-81693699 None:intergenic 25.0%
! ACTAGTATGAATGAAATGAA+TGG - chr7_3:81693764-81693783 None:intergenic 25.0%
! ATTGAAATTGAAGAGAATTC+AGG + chr7_3:81693853-81693872 Msa1129730:CDS 25.0%
! GAAATATATACAGCAAAACA+AGG - chr7_3:81694151-81694170 None:intergenic 25.0%
! TGTGTTACAAACAAAACAAA+AGG - chr7_3:81694338-81694357 None:intergenic 25.0%
TTAAATCAAGCAGACCAATT+TGG - chr7_3:81690761-81690780 None:intergenic 30.0%
!!! TGTGTTACTTGCAATTTTGT+TGG + chr7_3:81690822-81690841 Msa1129730:five_prime_UTR 30.0%
! TGCAATTTTGTTGGAATACA+AGG + chr7_3:81690831-81690850 Msa1129730:five_prime_UTR 30.0%
AACGAACTAAGAAGTTTAAG+AGG - chr7_3:81690866-81690885 None:intergenic 30.0%
TGATAGACTATGATACATCA+TGG - chr7_3:81691245-81691264 None:intergenic 30.0%
! TGATCGGTTCTAGTTAAATT+TGG + chr7_3:81691371-81691390 Msa1129730:intron 30.0%
! GATCGGTTCTAGTTAAATTT+GGG + chr7_3:81691372-81691391 Msa1129730:intron 30.0%
CTAGTTAAATTTGGGAGAAT+TGG + chr7_3:81691380-81691399 Msa1129730:intron 30.0%
!!! TGTTTTAGTTGCAGACAAAA+TGG + chr7_3:81691433-81691452 Msa1129730:intron 30.0%
AAATAATGAAGATGGAACCA+TGG + chr7_3:81691778-81691797 Msa1129730:CDS 30.0%
CTCAATCAAATCAATATCCA+TGG - chr7_3:81691798-81691817 None:intergenic 30.0%
!! CATGGATATTGATTTGATTG+AGG + chr7_3:81691796-81691815 Msa1129730:CDS 30.0%
! TCACTCTAGTAATGTTTTGT+TGG + chr7_3:81691919-81691938 Msa1129730:intron 30.0%
GCTCATAGTTTACTGATAAA+TGG + chr7_3:81691947-81691966 Msa1129730:intron 30.0%
AAGTACAGTAAAAACATGCT+AGG - chr7_3:81692114-81692133 None:intergenic 30.0%
! TTTTATAGCCCTTCATTCAA+AGG - chr7_3:81692187-81692206 None:intergenic 30.0%
TCTCTGTATATTCAACTGAA+AGG - chr7_3:81692417-81692436 None:intergenic 30.0%
! CAACTCATGACAGAAAATTT+TGG + chr7_3:81692588-81692607 Msa1129730:intron 30.0%
ATCATGTCCAATAAAAGAGA+AGG - chr7_3:81692690-81692709 None:intergenic 30.0%
! CTTTTATTGGACATGATTCT+TGG + chr7_3:81692693-81692712 Msa1129730:intron 30.0%
TGAAATTGTGATATACTTGC+TGG + chr7_3:81692790-81692809 Msa1129730:intron 30.0%
CATGACACTATACTAAATGT+TGG - chr7_3:81692972-81692991 None:intergenic 30.0%
CAACATTTAGTATAGTGTCA+TGG + chr7_3:81692970-81692989 Msa1129730:intron 30.0%
! GATTAGGTTTGCTTATCTAA+AGG + chr7_3:81693089-81693108 Msa1129730:intron 30.0%
! GTTTGCTTATCTAAAGGTAT+TGG + chr7_3:81693095-81693114 Msa1129730:CDS 30.0%
!!! ATATGCTATTTTAGGCTAGA+AGG + chr7_3:81693251-81693270 Msa1129730:intron 30.0%
! TCACAAGAATGCTAGATTTT+TGG + chr7_3:81693372-81693391 Msa1129730:CDS 30.0%
CAACATTGTAAAGAACATAC+CGG - chr7_3:81693398-81693417 None:intergenic 30.0%
GGTGTTAAGTAGATGTTAAT+TGG + chr7_3:81693574-81693593 Msa1129730:intron 30.0%
!! GATGGATTGAATGAAATCAA+AGG + chr7_3:81693683-81693702 Msa1129730:intron 30.0%
TCTTATCGTATCAGTTTCAT+TGG + chr7_3:81694026-81694045 Msa1129730:intron 30.0%
!! AGCTAGTTTCCATTTTCATT+TGG - chr7_3:81694246-81694265 None:intergenic 30.0%
TTCAGTTGTGTGAATAAGTA+TGG + chr7_3:81694311-81694330 Msa1129730:three_prime_UTR 30.0%
AAATATGGAGCATAGTAAGA+AGG + chr7_3:81694362-81694381 Msa1129730:three_prime_UTR 30.0%
! TCTTTGTTTCTTTAGCAAAG+TGG + chr7_3:81694466-81694485 Msa1129730:three_prime_UTR 30.0%
CAATGCATTTCAGTCCAAAT+TGG + chr7_3:81690744-81690763 Msa1129730:five_prime_UTR 35.0%
ACTAATTCTAGCAGAATCAG+TGG - chr7_3:81690904-81690923 None:intergenic 35.0%
CTGATTCTGCTAGAATTAGT+TGG + chr7_3:81690904-81690923 Msa1129730:intron 35.0%
TTGCAGACAAAATGGTAACT+AGG + chr7_3:81691441-81691460 Msa1129730:intron 35.0%
CTTCTAAGCGTAAACAAGAA+GGG - chr7_3:81691565-81691584 None:intergenic 35.0%
TCTTCTAAGCGTAAACAAGA+AGG - chr7_3:81691566-81691585 None:intergenic 35.0%
TTTACGCTTAGAAGAAGAGA+TGG + chr7_3:81691571-81691590 Msa1129730:CDS 35.0%
AGTGAACAAGCACAGATATA+AGG - chr7_3:81691652-81691671 None:intergenic 35.0%
CTGCAATTAGAGATCCAAAA+GGG + chr7_3:81691819-81691838 Msa1129730:CDS 35.0%
TGCAATTAGAGATCCAAAAG+GGG + chr7_3:81691820-81691839 Msa1129730:CDS 35.0%
GTTGAATATACAGAGAGAGT+TGG + chr7_3:81692421-81692440 Msa1129730:CDS 35.0%
!! CAGCTTTGAGTTCTTTAATC+TGG + chr7_3:81692541-81692560 Msa1129730:intron 35.0%
!!! ATTTTGGTTTTTCAGGCACT+TGG + chr7_3:81692604-81692623 Msa1129730:intron 35.0%
TTCTAACCAAGAAACATCTC+AGG - chr7_3:81692819-81692838 None:intergenic 35.0%
! TTCTTCAACCTTGAAGTACT+CGG + chr7_3:81692844-81692863 Msa1129730:intron 35.0%
! GTCATGGCAATGACAATTTT+AGG + chr7_3:81692986-81693005 Msa1129730:intron 35.0%
! TTCCAACAGCTTTATAACCA+AGG + chr7_3:81693145-81693164 Msa1129730:CDS 35.0%
TACCTTGGTTATAAAGCTGT+TGG - chr7_3:81693150-81693169 None:intergenic 35.0%
!!! AAGAATGCTAGATTTTTGGC+CGG + chr7_3:81693376-81693395 Msa1129730:CDS 35.0%
ACAACAAACACCAACAAATG+TGG - chr7_3:81693502-81693521 None:intergenic 35.0%
!! TTGTTGGTGTTTGTTGTTCT+CGG + chr7_3:81693505-81693524 Msa1129730:intron 35.0%
!! AATATTGGTTTCCACAGAAG+AGG - chr7_3:81693723-81693742 None:intergenic 35.0%
TCCAAGGACTTAGAAGAATA+TGG + chr7_3:81693895-81693914 Msa1129730:CDS 35.0%
! GTGAACAATGAAGTGCTTTA+TGG + chr7_3:81694421-81694440 Msa1129730:three_prime_UTR 35.0%
TGGACTGAAATGCATTGCAT+GGG - chr7_3:81690741-81690760 None:intergenic 40.0%
TTGGACTGAAATGCATTGCA+TGG - chr7_3:81690742-81690761 None:intergenic 40.0%
CAAAATGGTAACTAGGACAG+TGG + chr7_3:81691448-81691467 Msa1129730:exon 40.0%
TAACTAGGACAGTGGATCTT+CGG + chr7_3:81691456-81691475 Msa1129730:CDS 40.0%
TGAAACAATGCGAGTTGCTA+TGG + chr7_3:81691502-81691521 Msa1129730:CDS 40.0%
GAAGAGATGGCAAAGATAAC+TGG + chr7_3:81691584-81691603 Msa1129730:CDS 40.0%
TTGTTCACTGCGACATAAGA+GGG + chr7_3:81691663-81691682 Msa1129730:CDS 40.0%
AGAGGGAGTGAAGTAATTCT+TGG + chr7_3:81691680-81691699 Msa1129730:CDS 40.0%
GCTGCAATTAGAGATCCAAA+AGG + chr7_3:81691818-81691837 Msa1129730:CDS 40.0%
! AGCTTGTTTATCCAACCACA+AGG + chr7_3:81691843-81691862 Msa1129730:CDS 40.0%
! AAACAAATGAGCCTTGTGGT+TGG - chr7_3:81691857-81691876 None:intergenic 40.0%
AACCACAAGGCTCATTTGTT+TGG + chr7_3:81691856-81691875 Msa1129730:CDS 40.0%
TTCCAAACAAATGAGCCTTG+TGG - chr7_3:81691861-81691880 None:intergenic 40.0%
CGATATTTGTTCACGGAGTT+CGG - chr7_3:81692039-81692058 None:intergenic 40.0%
GAGCACACGATATTTGTTCA+CGG - chr7_3:81692046-81692065 None:intergenic 40.0%
ATATACAGAGAGAGTTGGAG+AGG + chr7_3:81692426-81692445 Msa1129730:CDS 40.0%
GGATTGAAGCTTCACATTGA+TGG + chr7_3:81692463-81692482 Msa1129730:CDS 40.0%
TGGTTTCCTGAGATGTTTCT+TGG + chr7_3:81692810-81692829 Msa1129730:intron 40.0%
CCAACAATTACAGATCCAAC+TGG - chr7_3:81693125-81693144 None:intergenic 40.0%
CCAGTTGGATCTGTAATTGT+TGG + chr7_3:81693122-81693141 Msa1129730:CDS 40.0%
! CTTCAAACAGACTAGCTAGT+AGG - chr7_3:81693612-81693631 None:intergenic 40.0%
CCATCTAAAGGACAAGTTAG+AGG - chr7_3:81693668-81693687 None:intergenic 40.0%
! CCTCTAACTTGTCCTTTAGA+TGG + chr7_3:81693665-81693684 Msa1129730:intron 40.0%
TGAAATCAAAGGACTGAGAG+TGG + chr7_3:81693694-81693713 Msa1129730:CDS 40.0%
GCCATATTCTTCTAAGTCCT+TGG - chr7_3:81693899-81693918 None:intergenic 40.0%
CATCGCTATCTGATATTTGG+TGG - chr7_3:81694088-81694107 None:intergenic 40.0%
GCACATCGCTATCTGATATT+TGG - chr7_3:81694091-81694110 None:intergenic 40.0%
ATACACTTTGTCGTGCTTTC+AGG + chr7_3:81694112-81694131 Msa1129730:CDS 40.0%
TTATTGAATGTTGCAGCGTG+CGG + chr7_3:81694209-81694228 Msa1129730:intron 40.0%
! TCCATTTTCATTTGGTCCTC+CGG - chr7_3:81694238-81694257 None:intergenic 40.0%
AACAGATTCTGTGCCATGTG+CGG + chr7_3:81691065-81691084 Msa1129730:intron 45.0%
GCAACTCGCATTGTTTCAGT+TGG - chr7_3:81691500-81691519 None:intergenic 45.0%
! GAGGTCGATGATGATGTTCT+TGG + chr7_3:81691533-81691552 Msa1129730:CDS 45.0%
! TTTTGTCCCATCAGGCACTA+TGG + chr7_3:81691622-81691641 Msa1129730:CDS 45.0%
TTTGTCCCATCAGGCACTAT+GGG + chr7_3:81691623-81691642 Msa1129730:CDS 45.0%
CTTGTTCACTGCGACATAAG+AGG + chr7_3:81691662-81691681 Msa1129730:CDS 45.0%
TCTTGGATGTACACCTCCAA+GGG - chr7_3:81691750-81691769 None:intergenic 45.0%
TTCTTGGATGTACACCTCCA+AGG - chr7_3:81691751-81691770 None:intergenic 45.0%
! GGATAAACAAGCTCCCCTTT+TGG - chr7_3:81691836-81691855 None:intergenic 45.0%
TACTGCAACTACTCTGCAGT+CGG + chr7_3:81691995-81692014 Msa1129730:intron 45.0%
ACTCTGCTGCCTTTGAATGA+AGG + chr7_3:81692175-81692194 Msa1129730:intron 45.0%
CTCTGCTGCCTTTGAATGAA+GGG + chr7_3:81692176-81692195 Msa1129730:intron 45.0%
TTGTTTCCTGAATGCAGCAC+CGG + chr7_3:81692382-81692401 Msa1129730:intron 45.0%
!! AACTGAAAGGCATCTACCAC+CGG - chr7_3:81692404-81692423 None:intergenic 45.0%
!! AAAGGTATTGGTGCTCCAGT+TGG + chr7_3:81693107-81693126 Msa1129730:CDS 45.0%
AGAAGGCTCAGAAAGACCTT+AGG + chr7_3:81693268-81693287 Msa1129730:CDS 45.0%
CACTGACACATGTTGGACAA+CGG + chr7_3:81693529-81693548 Msa1129730:intron 45.0%
AACGGACACCCTTCAATATC+AGG + chr7_3:81693547-81693566 Msa1129730:intron 45.0%
ACGGACACCCTTCAATATCA+GGG + chr7_3:81693548-81693567 Msa1129730:intron 45.0%
ATGATCCGATTGGCATGAGA+AGG - chr7_3:81693924-81693943 None:intergenic 45.0%
TCATGCCAATCGGATCATCA+AGG + chr7_3:81693926-81693945 Msa1129730:CDS 45.0%
! CAAGACCTTGATGATCCGAT+TGG - chr7_3:81693934-81693953 None:intergenic 45.0%
! CGCTATCTGATATTTGGTGG+TGG - chr7_3:81694085-81694104 None:intergenic 45.0%
! TCGTGCTTTCAGGTGATGAT+CGG + chr7_3:81694122-81694141 Msa1129730:intron 45.0%
AGTTGCTATGGCAAACGCTG+AGG + chr7_3:81691514-81691533 Msa1129730:CDS 50.0%
AGCGTAAACAAGAAGGGTCG+CGG - chr7_3:81691559-81691578 None:intergenic 50.0%
! GCTGCTCTTTTTGTCCCATC+AGG + chr7_3:81691614-81691633 Msa1129730:CDS 50.0%
TTGTCCCATCAGGCACTATG+GGG + chr7_3:81691624-81691643 Msa1129730:CDS 50.0%
!! AATGGAGGCATTGCAACCCT+TGG + chr7_3:81691731-81691750 Msa1129730:CDS 50.0%
TACTCTGCAGTCGGAGATGT+AGG + chr7_3:81692004-81692023 Msa1129730:intron 50.0%
GTCGGAGATGTAGGCAGAAT+TGG + chr7_3:81692013-81692032 Msa1129730:intron 50.0%
GGAGAGGTTGCTAAGAAGCA+CGG + chr7_3:81692442-81692461 Msa1129730:CDS 50.0%
!! CACTTGGTGTTCCTGTGGAT+AGG + chr7_3:81692620-81692639 Msa1129730:CDS 50.0%
! TGTGGATAGGCTTGTTCGAG+CGG + chr7_3:81692633-81692652 Msa1129730:CDS 50.0%
GCTTCGAACCGAGTACTTCA+AGG - chr7_3:81692855-81692874 None:intergenic 50.0%
AGGCTCAGAAAGACCTTAGG+TGG + chr7_3:81693271-81693290 Msa1129730:CDS 50.0%
CTCAGAAAGACCTTAGGTGG+TGG + chr7_3:81693274-81693293 Msa1129730:CDS 50.0%
CTGTCTCATTCCACCACCTA+AGG - chr7_3:81693287-81693306 None:intergenic 50.0%
!! CTTAGGTGGTGGAATGAGAC+AGG + chr7_3:81693285-81693304 Msa1129730:CDS 50.0%
CAACAAGTGCAGCTGCACAA+AGG - chr7_3:81693318-81693337 None:intergenic 50.0%
TCTCGGACACTGACACATGT+TGG + chr7_3:81693522-81693541 Msa1129730:intron 50.0%
CGGACACCCTTCAATATCAG+GGG + chr7_3:81693549-81693568 Msa1129730:intron 50.0%
CACCCTTCAATATCAGGGGT+CGG + chr7_3:81693553-81693572 Msa1129730:intron 50.0%
CACCGACCCCTGATATTGAA+GGG - chr7_3:81693558-81693577 None:intergenic 50.0%
ACACCGACCCCTGATATTGA+AGG - chr7_3:81693559-81693578 None:intergenic 50.0%
GAGAGTGGATACCTCTTCTG+TGG + chr7_3:81693709-81693728 Msa1129730:CDS 50.0%
TCCAGCAGCAAAGCTATCCA+AGG + chr7_3:81693879-81693898 Msa1129730:CDS 50.0%
! TCCTTGGATAGCTTTGCTGC+TGG - chr7_3:81693883-81693902 None:intergenic 50.0%
GGCATCCTTCTCATGCCAAT+CGG + chr7_3:81693916-81693935 Msa1129730:CDS 50.0%
GCCGGAGGACCAAATGAAAA+TGG + chr7_3:81694234-81694253 Msa1129730:CDS 50.0%
CATTATCCACGCTCGAAGCG+TGG + chr7_3:81691281-81691300 Msa1129730:intron 55.0%
TTATGTCCACGCTTCGAGCG+TGG - chr7_3:81691290-81691309 None:intergenic 55.0%
GGTTCCCCATAGTGCCTGAT+GGG - chr7_3:81691631-81691650 None:intergenic 55.0%
AGGTTCCCCATAGTGCCTGA+TGG - chr7_3:81691632-81691651 None:intergenic 55.0%
! TTTCCTGAATGCAGCACCGG+TGG + chr7_3:81692385-81692404 Msa1129730:intron 55.0%
!! TCAGGCACTTGGTGTTCCTG+TGG + chr7_3:81692615-81692634 Msa1129730:intron 55.0%
GCTCGAACAAGCCTATCCAC+AGG - chr7_3:81692634-81692653 None:intergenic 55.0%
!! GGTGGTGGAATGAGACAGGT+TGG + chr7_3:81693289-81693308 Msa1129730:CDS 55.0%
!! GGAGGCATTGCAACCCTTGG+AGG + chr7_3:81691734-81691753 Msa1129730:CDS 60.0%
!! CTACCACCGGTGCTGCATTC+AGG - chr7_3:81692391-81692410 None:intergenic 60.0%
ATGTTGCAGCGTGCGGTTGC+CGG + chr7_3:81694216-81694235 Msa1129730:intron 60.0%
TTGCAGCGTGCGGTTGCCGG+AGG + chr7_3:81694219-81694238 Msa1129730:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81690671 81694489 81690671 ID=Msa1129730;Name=Msa1129730
chr7_3 mRNA 81690671 81694489 81690671 ID=Msa1129730-mRNA-1;Parent=Msa1129730;Name=Msa1129730-mRNA-1;_AED=0.12;_eAED=0.12;_QI=187|1|1|1|0.88|0.8|10|226|358
chr7_3 exon 81690671 81690852 81690671 ID=Msa1129730-mRNA-1:exon:23874;Parent=Msa1129730-mRNA-1
chr7_3 exon 81691447 81691894 81691447 ID=Msa1129730-mRNA-1:exon:23875;Parent=Msa1129730-mRNA-1
chr7_3 exon 81692399 81692510 81692399 ID=Msa1129730-mRNA-1:exon:23876;Parent=Msa1129730-mRNA-1
chr7_3 exon 81692619 81692669 81692619 ID=Msa1129730-mRNA-1:exon:23877;Parent=Msa1129730-mRNA-1
chr7_3 exon 81693095 81693166 81693095 ID=Msa1129730-mRNA-1:exon:23878;Parent=Msa1129730-mRNA-1
chr7_3 exon 81693265 81693397 81693265 ID=Msa1129730-mRNA-1:exon:23879;Parent=Msa1129730-mRNA-1
chr7_3 exon 81693684 81693742 81693684 ID=Msa1129730-mRNA-1:exon:23880;Parent=Msa1129730-mRNA-1
chr7_3 exon 81693847 81693947 81693847 ID=Msa1129730-mRNA-1:exon:23881;Parent=Msa1129730-mRNA-1
chr7_3 exon 81694067 81694133 81694067 ID=Msa1129730-mRNA-1:exon:23882;Parent=Msa1129730-mRNA-1
chr7_3 exon 81694225 81694489 81694225 ID=Msa1129730-mRNA-1:exon:23883;Parent=Msa1129730-mRNA-1
chr7_3 five_prime_UTR 81690671 81690852 81690671 ID=Msa1129730-mRNA-1:five_prime_utr;Parent=Msa1129730-mRNA-1
chr7_3 five_prime_UTR 81691447 81691451 81691447 ID=Msa1129730-mRNA-1:five_prime_utr;Parent=Msa1129730-mRNA-1
chr7_3 CDS 81691452 81691894 81691452 ID=Msa1129730-mRNA-1:cds;Parent=Msa1129730-mRNA-1
chr7_3 CDS 81692399 81692510 81692399 ID=Msa1129730-mRNA-1:cds;Parent=Msa1129730-mRNA-1
chr7_3 CDS 81692619 81692669 81692619 ID=Msa1129730-mRNA-1:cds;Parent=Msa1129730-mRNA-1
chr7_3 CDS 81693095 81693166 81693095 ID=Msa1129730-mRNA-1:cds;Parent=Msa1129730-mRNA-1
chr7_3 CDS 81693265 81693397 81693265 ID=Msa1129730-mRNA-1:cds;Parent=Msa1129730-mRNA-1
chr7_3 CDS 81693684 81693742 81693684 ID=Msa1129730-mRNA-1:cds;Parent=Msa1129730-mRNA-1
chr7_3 CDS 81693847 81693947 81693847 ID=Msa1129730-mRNA-1:cds;Parent=Msa1129730-mRNA-1
chr7_3 CDS 81694067 81694133 81694067 ID=Msa1129730-mRNA-1:cds;Parent=Msa1129730-mRNA-1
chr7_3 CDS 81694225 81694263 81694225 ID=Msa1129730-mRNA-1:cds;Parent=Msa1129730-mRNA-1
chr7_3 three_prime_UTR 81694264 81694489 81694264 ID=Msa1129730-mRNA-1:three_prime_utr;Parent=Msa1129730-mRNA-1
Gene Sequence

>Msa1129730

ATGGTAACTAGGACAGTGGATCTTCGGTCAGATACAGTCACAAAACCAACTGAAACAATGCGAGTTGCTATGGCAAACGCTGAGGTCGATGATGATGTTCTTGGCCGCGACCCTTCTTGTTTACGCTTAGAAGAAGAGATGGCAAAGATAACTGGCAAAGAAGCTGCTCTTTTTGTCCCATCAGGCACTATGGGGAACCTTATATCTGTGCTTGTTCACTGCGACATAAGAGGGAGTGAAGTAATTCTTGGAGACAATTCACATATTCATATTTATGAGAATGGAGGCATTGCAACCCTTGGAGGTGTACATCCAAGAACAGTTAGAAATAATGAAGATGGAACCATGGATATTGATTTGATTGAGGCTGCAATTAGAGATCCAAAAGGGGAGCTTGTTTATCCAACCACAAGGCTCATTTGTTTGGAAAATTCTCATGGAAACACCGGTGGTAGATGCCTTTCAGTTGAATATACAGAGAGAGTTGGAGAGGTTGCTAAGAAGCACGGATTGAAGCTTCACATTGATGGAGCTCGTATATTTAATGCATCAGTTGCACTTGGTGTTCCTGTGGATAGGCTTGTTCGAGCGGCTGATTCAGTGTCAGTTTGCTTATCTAAAGGTATTGGTGCTCCAGTTGGATCTGTAATTGTTGGTTCCAACAGCTTTATAACCAAGGCTAGAAGGCTCAGAAAGACCTTAGGTGGTGGAATGAGACAGGTTGGCATCCTTTGTGCAGCTGCACTTGTTGCATTACATGAAAATGTTGAAAAGCTAGAAAGTGATCACAAGAATGCTAGATTTTTGGCCGATGGATTGAATGAAATCAAAGGACTGAGAGTGGATACCTCTTCTGTGGAAACCAATATTATATATATTGAAATTGAAGAGAATTCAGGAACTCCAGCAGCAAAGCTATCCAAGGACTTAGAAGAATATGGCATCCTTCTCATGCCAATCGGATCATCAAGATTGAGAGTTGTATTCCACCACCAAATATCAGATAGCGATGTGCGATACACTTTGTCGTGCTTTCAGCGTGCGGTTGCCGGAGGACCAAATGAAAATGGAAACTAG

Protein sequence

>Msa1129730

MVTRTVDLRSDTVTKPTETMRVAMANAEVDDDVLGRDPSCLRLEEEMAKITGKEAALFVPSGTMGNLISVLVHCDIRGSEVILGDNSHIHIYENGGIATLGGVHPRTVRNNEDGTMDIDLIEAAIRDPKGELVYPTTRLICLENSHGNTGGRCLSVEYTERVGEVAKKHGLKLHIDGARIFNASVALGVPVDRLVRAADSVSVCLSKGIGAPVGSVIVGSNSFITKARRLRKTLGGGMRQVGILCAAALVALHENVEKLESDHKNARFLADGLNEIKGLRVDTSSVETNIIYIEIEENSGTPAAKLSKDLEEYGILLMPIGSSRLRVVFHHQISDSDVRYTLSCFQRAVAGGPNENGN*