AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1254730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254730 MtrunA17_Chr8g0372051 99.419 344 2 0 1 344 1 344 0.0 684
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254730 AT2G17990.1 57.143 350 132 5 1 344 1 338 2.46e-128 371
Msa1254730 AT2G17990.3 57.143 350 132 5 1 344 11 348 4.80e-128 370
Msa1254730 AT5G66250.1 52.326 344 122 4 1 341 1 305 3.10e-104 308
Msa1254730 AT5G66250.3 52.326 344 122 4 1 341 1 305 3.10e-104 308
Msa1254730 AT5G66250.2 52.326 344 122 4 1 341 1 305 3.10e-104 308
Msa1254730 AT5G66250.4 49.451 364 122 5 1 341 1 325 3.71e-99 296
Msa1254730 AT2G17990.2 51.186 295 126 5 1 289 1 283 3.27e-91 276
Msa1254730 AT4G36105.1 43.894 303 99 8 44 344 12 245 3.68e-58 188
Msa1254730 AT4G36105.2 43.791 306 101 8 44 344 12 251 1.14e-57 187

Find 73 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGCATTCATGATGTTTA+TGG 0.159770 8_2:+52874499 None:intergenic
CAAACAGCTTCTCAATAGTT+TGG 0.270471 8_2:+52876262 None:intergenic
AGATTCGAAGAAGGAATTAG+AGG 0.325568 8_2:-52876937 Msa1254730:CDS
CAAAGACGGAGTTCCGTTAT+CGG 0.352043 8_2:-52876781 Msa1254730:CDS
AATGTCTCTTCACTGTAAAC+TGG 0.371375 8_2:-52874362 Msa1254730:three_prime_UTR
AGAGCTTAGTCGAGTGAAAC+AGG 0.376727 8_2:-52876361 Msa1254730:CDS
TCTTCTTCTTCACCCTTCTC+AGG 0.377042 8_2:-52877590 Msa1254730:intron
GCAATACATCTACTTGAGAT+TGG 0.380445 8_2:+52877006 None:intergenic
ACTTTACTCGAGGGAAAGAT+AGG 0.390209 8_2:-52877660 Msa1254730:five_prime_UTR
TCAAGGTTTGTTAGACGAAC+AGG 0.394419 8_2:-52876685 Msa1254730:CDS
AAAGAGTTGGTGATCTGATA+TGG 0.395399 8_2:-52877713 Msa1254730:five_prime_UTR
GCAAAGAGTTGCGGATTTGA+TGG 0.395456 8_2:-52876427 Msa1254730:CDS
ATGAAGAAGATGCAGAATCT+TGG 0.395594 8_2:-52876725 Msa1254730:CDS
GGCTGAAGTTCAGAAACTTA+TGG 0.400188 8_2:-52874695 Msa1254730:CDS
GAACATGTCTATGAAATTAG+AGG 0.405432 8_2:-52876499 Msa1254730:CDS
GTCGGGTTTGAAGTCTTTGT+CGG 0.406613 8_2:-52877069 Msa1254730:CDS
TGAGATAAAGGCGAGTATAC+AGG 0.416491 8_2:-52876970 Msa1254730:CDS
GATTTCTCAGTATAAATCAT+TGG 0.420923 8_2:+52874291 None:intergenic
GAACAGGATGCTGTTTATAT+AGG 0.424901 8_2:-52876669 Msa1254730:CDS
GCACACCAAGTTTACATTCC+AGG 0.426116 8_2:+52874413 None:intergenic
TTCCGTTATCGGATTGGTCT+AGG 0.426402 8_2:-52876770 Msa1254730:CDS
TACTCTACAGAACTTGTTTG+AGG 0.426684 8_2:-52874558 Msa1254730:three_prime_UTR
CAAGAAAGAAGCTCAACTTC+TGG 0.441607 8_2:-52874641 Msa1254730:CDS
AGTTGGAAAGACTACTCAAT+TGG 0.449839 8_2:-52874740 Msa1254730:CDS
ATCGGAAACTGCACTTGAAA+AGG 0.451142 8_2:-52876574 Msa1254730:CDS
TCCCGGATTCAATTCTGAAA+AGG 0.452827 8_2:+52874446 None:intergenic
TCTTGGGAGCACAGGCTAGT+TGG 0.465821 8_2:-52874757 Msa1254730:intron
GTCTATGAAATTAGAGGAGA+TGG 0.468338 8_2:-52876493 Msa1254730:CDS
TCGGGTTTGAAGTCTTTGTC+GGG 0.479321 8_2:-52877068 Msa1254730:CDS
GGCTTATCTCTAGCATCTGA+TGG 0.482565 8_2:+52874312 None:intergenic
GGTGAAGATATTGCAATGTC+GGG 0.484131 8_2:-52877086 Msa1254730:CDS
GATTTATACTGAGAAATCCT+TGG 0.505813 8_2:-52874286 Msa1254730:three_prime_UTR
ACGGAGTTCCGTTATCGGAT+TGG 0.507338 8_2:-52876776 Msa1254730:CDS
TTCAGAAGAAGATTCGAAGA+AGG 0.513804 8_2:-52876946 Msa1254730:CDS
TGATGGAAGCTCTTGTGAAA+AGG 0.517318 8_2:-52876611 Msa1254730:CDS
CACACCAAGTTTACATTCCA+GGG 0.522799 8_2:+52874414 None:intergenic
GATGGAAGCTCTTGTGAAAA+GGG 0.523267 8_2:-52876610 Msa1254730:CDS
AAAGTCAAAAGCTAGAATCA+TGG 0.527633 8_2:-52876868 Msa1254730:CDS
TCTTGTGATACGTGGAAGGA+AGG 0.528893 8_2:-52877041 Msa1254730:CDS
AAGAAGAAGAAGACGATGAG+AGG 0.537009 8_2:+52877603 None:intergenic
GGGTGAAGATATTGCAATGT+CGG 0.539200 8_2:-52877087 Msa1254730:CDS
TGGAAAGACTACTCAATTGG+AGG 0.542813 8_2:-52874737 Msa1254730:CDS
TTCCTAGACCAATCCGATAA+CGG 0.544675 8_2:+52876768 None:intergenic
TTTGATTCCACACGACGTAT+GGG 0.547413 8_2:+52876830 None:intergenic
CGATATGCGGCAAAGAGTTG+CGG 0.550984 8_2:-52876436 Msa1254730:CDS
GAGATAAAGGCGAGTATACA+GGG 0.558828 8_2:-52876969 Msa1254730:CDS
TCAAGAATAAAGCAAAGAGT+TGG 0.559835 8_2:-52877726 Msa1254730:five_prime_UTR
GAATGAACAATGTAAGATGA+TGG 0.563082 8_2:-52874614 Msa1254730:CDS
CATTGAACAGGAAATGGCGG+CGG 0.565017 8_2:-52877108 Msa1254730:intron
AAGAAGAAGACGATGAGAGG+TGG 0.570612 8_2:+52877606 None:intergenic
GAAGATGCAGAATCTTGGAT+AGG 0.574114 8_2:-52876720 Msa1254730:CDS
CACAAGAGCTTCCATCACAT+CGG 0.577039 8_2:+52876617 None:intergenic
GGGTGAGAAAATGCAGAAAG+AGG 0.582753 8_2:-52874716 Msa1254730:CDS
CGGGTCAATCTTGTGATACG+TGG 0.590071 8_2:-52877049 Msa1254730:CDS
TTAATTCATAAAAGTAAATG+CGG 0.590291 8_2:+52877766 None:intergenic
ATAGGAATTAGCCGTCATCA+AGG 0.590681 8_2:-52876702 Msa1254730:CDS
CTTGTGATACGTGGAAGGAA+GGG 0.592666 8_2:-52877040 Msa1254730:CDS
CTATTGAGAAGCTGTTTGAA+CGG 0.594283 8_2:-52876257 Msa1254730:intron
ATTGAACAGGAAATGGCGGC+GGG 0.595048 8_2:-52877107 Msa1254730:intron
GATACTGAACTCTGTTCAGA+TGG 0.598085 8_2:-52876643 Msa1254730:CDS
TCAGATGGTCACCGATGTGA+TGG 0.600291 8_2:-52876628 Msa1254730:CDS
AGAGAGAGAGAACCTGAGAA+GGG 0.608775 8_2:+52877578 None:intergenic
TGATACGTGGAAGGAAGGGA+TGG 0.610710 8_2:-52877036 Msa1254730:CDS
TCAATCTTGTGATACGTGGA+AGG 0.612583 8_2:-52877045 Msa1254730:CDS
GTAGGGGTTGTTGACAAAGA+CGG 0.612947 8_2:-52876795 Msa1254730:CDS
CGTCTAACAAACCTTGATGA+CGG 0.621672 8_2:+52876691 None:intergenic
GGAAAGACTACTCAATTGGA+GGG 0.626700 8_2:-52874736 Msa1254730:CDS
TAGTAGTCTAATCACAGTGA+GGG 0.635665 8_2:-52876313 Msa1254730:CDS
GATGGATTATTCGTGATGTG+AGG 0.651093 8_2:+52874330 None:intergenic
AGACGATGAGAGGTGGATCG+TGG 0.653406 8_2:+52877613 None:intergenic
GACATATTGAGGGACTATCG+TGG 0.663169 8_2:-52877803 None:intergenic
CAACATTGAACAGGAAATGG+CGG 0.667545 8_2:-52877111 Msa1254730:intron
TTAGTAGTCTAATCACAGTG+AGG 0.744586 8_2:-52876314 Msa1254730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACTTTATTATAGAATTT+GGG + chr8_2:52874540-52874559 None:intergenic 10.0%
!! ATATACTTTATTATAGAATT+TGG + chr8_2:52874541-52874560 None:intergenic 10.0%
!!! AATTTTGTATAAAATTATCT+GGG + chr8_2:52876385-52876404 None:intergenic 10.0%
!!! AGATAATTTTATACAAAATT+GGG - chr8_2:52876385-52876404 Msa1254730:CDS 10.0%
!! TTAATTCATAAAAGTAAATG+CGG + chr8_2:52874120-52874139 None:intergenic 15.0%
!! AAAATTAAACTTCAGAATTA+AGG + chr8_2:52875884-52875903 None:intergenic 15.0%
!!! AAGTTTAATTTTCTTCATTA+TGG - chr8_2:52875892-52875911 Msa1254730:intron 15.0%
!! CACAAAACAAATAATTTATT+AGG + chr8_2:52876056-52876075 None:intergenic 15.0%
!!! TTTTAAATTACACGTTAATT+TGG - chr8_2:52876220-52876239 Msa1254730:intron 15.0%
!!! CAATTTTGTATAAAATTATC+TGG + chr8_2:52876386-52876405 None:intergenic 15.0%
!!! CAGATAATTTTATACAAAAT+TGG - chr8_2:52876384-52876403 Msa1254730:CDS 15.0%
!! TATAGAAGAATGAAATCAAA+GGG + chr8_2:52874355-52874374 None:intergenic 20.0%
!! ATATAGAAGAATGAAATCAA+AGG + chr8_2:52874356-52874375 None:intergenic 20.0%
!!! TATCTTTTAATTTTCCAGAT+CGG - chr8_2:52874411-52874430 Msa1254730:three_prime_UTR 20.0%
!! AATGAAGTAAAACAATTAGT+GGG + chr8_2:52874483-52874502 None:intergenic 20.0%
!! AAATGAAGTAAAACAATTAG+TGG + chr8_2:52874484-52874503 None:intergenic 20.0%
!! TTTATGCAAATTGAAAACAT+TGG - chr8_2:52874689-52874708 Msa1254730:CDS 20.0%
!!! TATATTGATGCATATGTTTT+TGG - chr8_2:52874723-52874742 Msa1254730:CDS 20.0%
!! AGAAAAAGTTAATGAGATAA+AGG - chr8_2:52874901-52874920 Msa1254730:intron 20.0%
!! TACATCCTTTGATTAATTTA+AGG - chr8_2:52875936-52875955 Msa1254730:intron 20.0%
!! ACATCCTTTGATTAATTTAA+GGG - chr8_2:52875937-52875956 Msa1254730:intron 20.0%
!!! TCATTTTTAAAGCCATAATT+TGG - chr8_2:52876264-52876283 Msa1254730:CDS 20.0%
!!! TTTTTTATCATCGTAAAATC+TGG - chr8_2:52876311-52876330 Msa1254730:CDS 20.0%
!! TTATACAAAATTGGGTATTA+TGG - chr8_2:52876393-52876412 Msa1254730:CDS 20.0%
!! TATACAAAATTGGGTATTAT+GGG - chr8_2:52876394-52876413 Msa1254730:CDS 20.0%
!! TACATAAGCAATTATATGAT+AGG - chr8_2:52876795-52876814 Msa1254730:CDS 20.0%
!! TTAAAAGTTAACTATCAAAG+AGG + chr8_2:52876886-52876905 None:intergenic 20.0%
!!! TCTTTGATAGTTAACTTTTA+AGG - chr8_2:52876885-52876904 Msa1254730:CDS 20.0%
!!! CTTTGATAGTTAACTTTTAA+GGG - chr8_2:52876886-52876905 Msa1254730:CDS 20.0%
!! AAAATAAAAATCATGCAGTA+AGG + chr8_2:52877107-52877126 None:intergenic 20.0%
!!! TGCATGATTTTTATTTTCTT+GGG - chr8_2:52877110-52877129 Msa1254730:intron 20.0%
!!! ACTGTGTAAAAGATATTTTT+CGG + chr8_2:52877695-52877714 None:intergenic 20.0%
!!! AAAAATATCTTTTACACAGT+TGG - chr8_2:52877695-52877714 Msa1254730:five_prime_UTR 20.0%
! ATAGAAGAATGAAATCAAAG+GGG + chr8_2:52874354-52874373 None:intergenic 25.0%
!!! TCGGTTTAAACTTCATTTTT+TGG - chr8_2:52874430-52874449 Msa1254730:three_prime_UTR 25.0%
!!! CGGTTTAAACTTCATTTTTT+GGG - chr8_2:52874431-52874450 Msa1254730:three_prime_UTR 25.0%
!!! GGTTTAAACTTCATTTTTTG+GGG - chr8_2:52874432-52874451 Msa1254730:three_prime_UTR 25.0%
!!! GTTTAAACTTCATTTTTTGG+GGG - chr8_2:52874433-52874452 Msa1254730:three_prime_UTR 25.0%
!!! TTTAAACTTCATTTTTTGGG+GGG - chr8_2:52874434-52874453 Msa1254730:three_prime_UTR 25.0%
!! TATTATTGATTGCTCTTTGA+TGG - chr8_2:52874624-52874643 Msa1254730:CDS 25.0%
!! ATTATTGATTGCTCTTTGAT+GGG - chr8_2:52874625-52874644 Msa1254730:CDS 25.0%
!!! ATAGTATTTTGAACGATATG+CGG - chr8_2:52875434-52875453 Msa1254730:intron 25.0%
! AATTTAGCATGAAATTATGC+AGG + chr8_2:52875756-52875775 None:intergenic 25.0%
!!! TTATGAGTTTTCTTGATGAT+AGG - chr8_2:52875788-52875807 Msa1254730:intron 25.0%
! CATTCCCTTAAATTAATCAA+AGG + chr8_2:52875944-52875963 None:intergenic 25.0%
!! CTTATCTATCCAATTTGTTT+AGG - chr8_2:52875998-52876017 Msa1254730:intron 25.0%
! ATTAGGATGATCTATGTTAT+TGG + chr8_2:52876039-52876058 None:intergenic 25.0%
!!! TTTCCTAAGTTTTTTGCTTT+GGG - chr8_2:52876131-52876150 Msa1254730:intron 25.0%
!!! TTTTAAAGCCATAATTTGGA+TGG - chr8_2:52876268-52876287 Msa1254730:CDS 25.0%
! GTATAAAATTATCTGGGAAA+AGG + chr8_2:52876379-52876398 None:intergenic 25.0%
!!! CTTATTTTTATGAGCTTTCT+AGG - chr8_2:52876525-52876544 Msa1254730:CDS 25.0%
!! AGGTCAAATTGTTTTCATAT+AGG + chr8_2:52876578-52876597 None:intergenic 25.0%
! CTTTAACAAAAGATAAAACG+AGG + chr8_2:52876598-52876617 None:intergenic 25.0%
!!! ATTAAGTTGTTTCTCCAAAT+AGG - chr8_2:52876839-52876858 Msa1254730:CDS 25.0%
! AAATCACTTAAGATCCTATT+TGG + chr8_2:52876856-52876875 None:intergenic 25.0%
! AAATAGGATCTTAAGTGATT+TGG - chr8_2:52876855-52876874 Msa1254730:CDS 25.0%
!! TATAGGAGTATAATTACGAT+GGG + chr8_2:52876935-52876954 None:intergenic 25.0%
!! ATATAGGAGTATAATTACGA+TGG + chr8_2:52876936-52876955 None:intergenic 25.0%
!!! CTGCATGATTTTTATTTTCT+TGG - chr8_2:52877109-52877128 Msa1254730:intron 25.0%
!!! ATGCCTTTTTTTTCATTTTC+TGG - chr8_2:52877399-52877418 Msa1254730:intron 25.0%
! ACACCAGAAAATGAAAAAAA+AGG + chr8_2:52877405-52877424 None:intergenic 25.0%
! GATTTCTCAGTATAAATCAT+TGG + chr8_2:52877595-52877614 None:intergenic 25.0%
TCAAGAATAAAGCAAAGAGT+TGG - chr8_2:52874157-52874176 Msa1254730:three_prime_UTR 30.0%
! TGTTTCTTTTACTTTACTCG+AGG - chr8_2:52874213-52874232 Msa1254730:three_prime_UTR 30.0%
! GTTTCTTTTACTTTACTCGA+GGG - chr8_2:52874214-52874233 Msa1254730:three_prime_UTR 30.0%
AAATGAAGTTTAAACCGATC+TGG + chr8_2:52874428-52874447 None:intergenic 30.0%
!!! TTAAACTTCATTTTTTGGGG+GGG - chr8_2:52874435-52874454 Msa1254730:three_prime_UTR 30.0%
! TTATTGATTGCTCTTTGATG+GGG - chr8_2:52874626-52874645 Msa1254730:CDS 30.0%
ATTCAACATTGAACAGGAAA+TGG - chr8_2:52874769-52874788 Msa1254730:intron 30.0%
AAAGTCAAAAGCTAGAATCA+TGG - chr8_2:52875015-52875034 Msa1254730:intron 30.0%
!! TCTTGTGAAAAGGGTTTTAT+TGG - chr8_2:52875282-52875301 Msa1254730:intron 30.0%
GAACATGTCTATGAAATTAG+AGG - chr8_2:52875384-52875403 Msa1254730:intron 30.0%
! TCTATCCAATTTGTTTAGGT+TGG - chr8_2:52876002-52876021 Msa1254730:intron 30.0%
AGAAACCAACCTAAACAAAT+TGG + chr8_2:52876010-52876029 None:intergenic 30.0%
!!! CTTTCCTAAGTTTTTTGCTT+TGG - chr8_2:52876130-52876149 Msa1254730:intron 30.0%
ATACCCAAAGCAAAAAACTT+AGG + chr8_2:52876137-52876156 None:intergenic 30.0%
ACAATAGCAAGTGAAAAGTA+TGG - chr8_2:52876195-52876214 Msa1254730:intron 30.0%
TTTCAAAGCCATCCAAATTA+TGG + chr8_2:52876279-52876298 None:intergenic 30.0%
! AAATGGGTTCATAAGCTTAT+AGG + chr8_2:52876644-52876663 None:intergenic 30.0%
TATAAGCTTATGAACCCATT+TGG - chr8_2:52876643-52876662 Msa1254730:CDS 30.0%
ATAAGCTTATGAACCCATTT+GGG - chr8_2:52876644-52876663 Msa1254730:CDS 30.0%
!! TGATAGTTAACTTTTAAGGG+AGG - chr8_2:52876889-52876908 Msa1254730:CDS 30.0%
!! GATAGTTAACTTTTAAGGGA+GGG - chr8_2:52876890-52876909 Msa1254730:CDS 30.0%
TCCTATATCATTGTGTTTGT+TGG - chr8_2:52876948-52876967 Msa1254730:CDS 30.0%
CCTATATCATTGTGTTTGTT+GGG - chr8_2:52876949-52876968 Msa1254730:CDS 30.0%
TTCTGTTCATATATGCTTAG+TGG - chr8_2:52877015-52877034 Msa1254730:CDS 30.0%
GAATGAACAATGTAAGATGA+TGG - chr8_2:52877269-52877288 Msa1254730:intron 30.0%
!! AAAGGCATTCATGATGTTTA+TGG + chr8_2:52877387-52877406 None:intergenic 30.0%
GATTTATACTGAGAAATCCT+TGG - chr8_2:52877597-52877616 Msa1254730:five_prime_UTR 30.0%
! CTTTTTACATTGTTAGTGCA+AGG + chr8_2:52877657-52877676 None:intergenic 30.0%
!! AAAGAGTTGGTGATCTGATA+TGG - chr8_2:52874170-52874189 Msa1254730:three_prime_UTR 35.0%
! TATTGATTGCTCTTTGATGG+GGG - chr8_2:52874627-52874646 Msa1254730:CDS 35.0%
!! TTTGGATTTCTAGTTGCAAC+AGG - chr8_2:52874655-52874674 Msa1254730:CDS 35.0%
TAGTTGCAACAGGATTGTTT+AGG - chr8_2:52874665-52874684 Msa1254730:CDS 35.0%
AGTTGCAACAGGATTGTTTA+GGG - chr8_2:52874666-52874685 Msa1254730:CDS 35.0%
GATCGTATTCAACATTGAAC+AGG - chr8_2:52874763-52874782 Msa1254730:intron 35.0%
GCAATACATCTACTTGAGAT+TGG + chr8_2:52874880-52874899 None:intergenic 35.0%
TTCAGAAGAAGATTCGAAGA+AGG - chr8_2:52874937-52874956 Msa1254730:intron 35.0%
AGATTCGAAGAAGGAATTAG+AGG - chr8_2:52874946-52874965 Msa1254730:intron 35.0%
! AGAAGGAATTAGAGGTTTTG+TGG - chr8_2:52874954-52874973 Msa1254730:intron 35.0%
TGTGGAATCAAAAAGTTGGA+TGG - chr8_2:52875064-52875083 Msa1254730:intron 35.0%
GTGGAATCAAAAAGTTGGAT+GGG - chr8_2:52875065-52875084 Msa1254730:intron 35.0%
TGGAATCAAAAAGTTGGATG+GGG - chr8_2:52875066-52875085 Msa1254730:intron 35.0%
ATGAAGAAGATGCAGAATCT+TGG - chr8_2:52875158-52875177 Msa1254730:intron 35.0%
! GAACAGGATGCTGTTTATAT+AGG - chr8_2:52875214-52875233 Msa1254730:intron 35.0%
!!! TGTGAAAAGGGTTTTATTGG+CGG - chr8_2:52875285-52875304 Msa1254730:intron 35.0%
GTCTATGAAATTAGAGGAGA+TGG - chr8_2:52875390-52875409 Msa1254730:intron 35.0%
TTAGTAGTCTAATCACAGTG+AGG - chr8_2:52875569-52875588 Msa1254730:intron 35.0%
TAGTAGTCTAATCACAGTGA+GGG - chr8_2:52875570-52875589 Msa1254730:intron 35.0%
!! AGTTTGGAATTGCTTTTCTG+AGG + chr8_2:52875608-52875627 None:intergenic 35.0%
CAAACAGCTTCTCAATAGTT+TGG + chr8_2:52875624-52875643 None:intergenic 35.0%
CTATTGAGAAGCTGTTTGAA+CGG - chr8_2:52875626-52875645 Msa1254730:intron 35.0%
CAAGTGTCTTGACTATTATC+TGG - chr8_2:52875680-52875699 Msa1254730:intron 35.0%
TTCAGAATTAAGGACCTGTT+TGG + chr8_2:52875874-52875893 None:intergenic 35.0%
!! CTTCATAGAAGTGCTAAGAA+AGG + chr8_2:52875971-52875990 None:intergenic 35.0%
!!! ACTTTTCACTTGCTATTGTG+TGG + chr8_2:52876194-52876213 None:intergenic 35.0%
!! TCTGGCTTAGAATATGCTTT+TGG - chr8_2:52876329-52876348 Msa1254730:CDS 35.0%
GACTGTTTGAGAGAGTTTAT+AGG - chr8_2:52876468-52876487 Msa1254730:CDS 35.0%
CCCAACAAACACAATGATAT+AGG + chr8_2:52876952-52876971 None:intergenic 35.0%
!! TGTGTTTGTTGGGTTTTTCT+TGG - chr8_2:52876959-52876978 Msa1254730:CDS 35.0%
!! GTGTTTGTTGGGTTTTTCTT+GGG - chr8_2:52876960-52876979 Msa1254730:CDS 35.0%
AATTGCAGTGTTCACATAGA+AGG - chr8_2:52877049-52877068 Msa1254730:CDS 35.0%
!!! TTTTATTTTCTTGGGAGCAC+AGG - chr8_2:52877118-52877137 Msa1254730:intron 35.0%
AGTTGGAAAGACTACTCAAT+TGG - chr8_2:52877143-52877162 Msa1254730:intron 35.0%
! TACTCTACAGAACTTGTTTG+AGG - chr8_2:52877325-52877344 Msa1254730:intron 35.0%
!! GTCCTGAAAAAAAGCATCAT+TGG - chr8_2:52877355-52877374 Msa1254730:intron 35.0%
!!! CTCCAATGATGCTTTTTTTC+AGG + chr8_2:52877360-52877379 None:intergenic 35.0%
! TGCCTTTTCAGAATTGAATC+CGG - chr8_2:52877435-52877454 Msa1254730:intron 35.0%
TTCCAGGGAAAAATATTTCC+CGG + chr8_2:52877457-52877476 None:intergenic 35.0%
! TTTTCCCTGGAATGTAAACT+TGG - chr8_2:52877465-52877484 Msa1254730:intron 35.0%
AATGTCTCTTCACTGTAAAC+TGG - chr8_2:52877521-52877540 Msa1254730:intron 35.0%
ACTTTACTCGAGGGAAAGAT+AGG - chr8_2:52874223-52874242 Msa1254730:three_prime_UTR 40.0%
AAGAAGAAGAAGACGATGAG+AGG + chr8_2:52874283-52874302 None:intergenic 40.0%
TCTTTGATGGGGGTTTACTT+TGG - chr8_2:52874637-52874656 Msa1254730:CDS 40.0%
CAACATTGAACAGGAAATGG+CGG - chr8_2:52874772-52874791 Msa1254730:intron 40.0%
GGGTGAAGATATTGCAATGT+CGG - chr8_2:52874796-52874815 Msa1254730:intron 40.0%
GGTGAAGATATTGCAATGTC+GGG - chr8_2:52874797-52874816 Msa1254730:intron 40.0%
TCAATCTTGTGATACGTGGA+AGG - chr8_2:52874838-52874857 Msa1254730:intron 40.0%
TGAGATAAAGGCGAGTATAC+AGG - chr8_2:52874913-52874932 Msa1254730:intron 40.0%
GAGATAAAGGCGAGTATACA+GGG - chr8_2:52874914-52874933 Msa1254730:intron 40.0%
TTTGATTCCACACGACGTAT+GGG + chr8_2:52875056-52875075 None:intergenic 40.0%
!! TTTTGATTCCACACGACGTA+TGG + chr8_2:52875057-52875076 None:intergenic 40.0%
GTCGTGTGGAATCAAAAAGT+TGG - chr8_2:52875060-52875079 Msa1254730:intron 40.0%
ATCAAAAAGTTGGATGGGGT+AGG - chr8_2:52875070-52875089 Msa1254730:intron 40.0%
TCAAAAAGTTGGATGGGGTA+GGG - chr8_2:52875071-52875090 Msa1254730:intron 40.0%
TTCCTAGACCAATCCGATAA+CGG + chr8_2:52875118-52875137 None:intergenic 40.0%
GAAGATGCAGAATCTTGGAT+AGG - chr8_2:52875163-52875182 Msa1254730:intron 40.0%
ATAGGAATTAGCCGTCATCA+AGG - chr8_2:52875181-52875200 Msa1254730:intron 40.0%
CGTCTAACAAACCTTGATGA+CGG + chr8_2:52875195-52875214 None:intergenic 40.0%
!! TCAAGGTTTGTTAGACGAAC+AGG - chr8_2:52875198-52875217 Msa1254730:intron 40.0%
GATACTGAACTCTGTTCAGA+TGG - chr8_2:52875240-52875259 Msa1254730:intron 40.0%
TGATGGAAGCTCTTGTGAAA+AGG - chr8_2:52875272-52875291 Msa1254730:intron 40.0%
GATGGAAGCTCTTGTGAAAA+GGG - chr8_2:52875273-52875292 Msa1254730:intron 40.0%
!!! AAGGGTTTTATTGGCGGAAT+CGG - chr8_2:52875291-52875310 Msa1254730:intron 40.0%
ATCGGAAACTGCACTTGAAA+AGG - chr8_2:52875309-52875328 Msa1254730:intron 40.0%
GGAAAAAGTGAGTTTACGTC+AGG - chr8_2:52875330-52875349 Msa1254730:intron 40.0%
! TTTTTCGTTTGACCTAGTCG+TGG - chr8_2:52875720-52875739 Msa1254730:intron 40.0%
AATTAAGGACCTGTTTGGCA+TGG + chr8_2:52875869-52875888 None:intergenic 40.0%
!! CATAGAAGTGCTAAGAAAGG+AGG + chr8_2:52875968-52875987 None:intergenic 40.0%
GAACATGGCAACTTTCAACA+AGG + chr8_2:52876090-52876109 None:intergenic 40.0%
ACCAAAAGACATCGTGAACA+TGG + chr8_2:52876105-52876124 None:intergenic 40.0%
! TTTGTTGGGTTTTTCTTGGG+TGG - chr8_2:52876963-52876982 Msa1254730:CDS 40.0%
! TTGTTGGGTTTTTCTTGGGT+GGG - chr8_2:52876964-52876983 Msa1254730:CDS 40.0%
TGGAAAGACTACTCAATTGG+AGG - chr8_2:52877146-52877165 Msa1254730:intron 40.0%
GGAAAGACTACTCAATTGGA+GGG - chr8_2:52877147-52877166 Msa1254730:intron 40.0%
GGCTGAAGTTCAGAAACTTA+TGG - chr8_2:52877188-52877207 Msa1254730:intron 40.0%
CAAGAAAGAAGCTCAACTTC+TGG - chr8_2:52877242-52877261 Msa1254730:intron 40.0%
! GCCTTTTCAGAATTGAATCC+GGG - chr8_2:52877436-52877455 Msa1254730:intron 40.0%
! TCCCGGATTCAATTCTGAAA+AGG + chr8_2:52877440-52877459 None:intergenic 40.0%
! ATCCGGGAAATATTTTTCCC+TGG - chr8_2:52877452-52877471 Msa1254730:intron 40.0%
CACACCAAGTTTACATTCCA+GGG + chr8_2:52877472-52877491 None:intergenic 40.0%
!! GATGGATTATTCGTGATGTG+AGG + chr8_2:52877556-52877575 None:intergenic 40.0%
!!! CTTTTGCTAAAAGAGCACCA+AGG + chr8_2:52877617-52877636 None:intergenic 40.0%
! GGTGCTCTTTTAGCAAAAGA+AGG - chr8_2:52877618-52877637 Msa1254730:five_prime_UTR 40.0%
AAGAAGAAGACGATGAGAGG+TGG + chr8_2:52874280-52874299 None:intergenic 45.0%
TCTTCTTCTTCACCCTTCTC+AGG - chr8_2:52874293-52874312 Msa1254730:three_prime_UTR 45.0%
AGAGAGAGAGAACCTGAGAA+GGG + chr8_2:52874308-52874327 None:intergenic 45.0%
! GTCGGGTTTGAAGTCTTTGT+CGG - chr8_2:52874814-52874833 Msa1254730:intron 45.0%
! TCGGGTTTGAAGTCTTTGTC+GGG - chr8_2:52874815-52874834 Msa1254730:intron 45.0%
TCTTGTGATACGTGGAAGGA+AGG - chr8_2:52874842-52874861 Msa1254730:intron 45.0%
CTTGTGATACGTGGAAGGAA+GGG - chr8_2:52874843-52874862 Msa1254730:intron 45.0%
CAAAAAGTTGGATGGGGTAG+GGG - chr8_2:52875072-52875091 Msa1254730:intron 45.0%
GTAGGGGTTGTTGACAAAGA+CGG - chr8_2:52875088-52875107 Msa1254730:intron 45.0%
CAAAGACGGAGTTCCGTTAT+CGG - chr8_2:52875102-52875121 Msa1254730:intron 45.0%
!! TTCCGTTATCGGATTGGTCT+AGG - chr8_2:52875113-52875132 Msa1254730:intron 45.0%
CACAAGAGCTTCCATCACAT+CGG + chr8_2:52875269-52875288 None:intergenic 45.0%
GCAAAGAGTTGCGGATTTGA+TGG - chr8_2:52875456-52875475 Msa1254730:intron 45.0%
AGAGCTTAGTCGAGTGAAAC+AGG - chr8_2:52875522-52875541 Msa1254730:intron 45.0%
AGTTCACAACCATGCCAAAC+AGG - chr8_2:52875857-52875876 Msa1254730:intron 45.0%
! GCCATGTTCACGATGTCTTT+TGG - chr8_2:52876101-52876120 Msa1254730:intron 45.0%
TATTGTGTGGAGAGAGTGAC+AGG + chr8_2:52876181-52876200 None:intergenic 45.0%
GCATCTCATACTACTCGATG+TGG + chr8_2:52876431-52876450 None:intergenic 45.0%
GCTTATGAACCCATTTGGGT+TGG - chr8_2:52876648-52876667 Msa1254730:CDS 45.0%
GAAACGAACCTAAGACCTTG+AGG + chr8_2:52876712-52876731 None:intergenic 45.0%
TTTCTCCCCGGAGCTAATTT+GGG - chr8_2:52876728-52876747 Msa1254730:CDS 45.0%
GATGGGCATCTAAGTACTTG+GGG + chr8_2:52876918-52876937 None:intergenic 45.0%
CGATGGGCATCTAAGTACTT+GGG + chr8_2:52876919-52876938 None:intergenic 45.0%
ACGATGGGCATCTAAGTACT+TGG + chr8_2:52876920-52876939 None:intergenic 45.0%
! TGTTGGGTTTTTCTTGGGTG+GGG - chr8_2:52876965-52876984 Msa1254730:CDS 45.0%
GGGTGAGAAAATGCAGAAAG+AGG - chr8_2:52877167-52877186 Msa1254730:intron 45.0%
GCACACCAAGTTTACATTCC+AGG + chr8_2:52877473-52877492 None:intergenic 45.0%
GGCTTATCTCTAGCATCTGA+TGG + chr8_2:52877574-52877593 None:intergenic 45.0%
GAGAGAGAGAGAACCTGAGA+AGG + chr8_2:52874309-52874328 None:intergenic 50.0%
CATTGAACAGGAAATGGCGG+CGG - chr8_2:52874775-52874794 Msa1254730:intron 50.0%
ATTGAACAGGAAATGGCGGC+GGG - chr8_2:52874776-52874795 Msa1254730:intron 50.0%
CGGGTCAATCTTGTGATACG+TGG - chr8_2:52874834-52874853 Msa1254730:intron 50.0%
TGATACGTGGAAGGAAGGGA+TGG - chr8_2:52874847-52874866 Msa1254730:intron 50.0%
ACGGAGTTCCGTTATCGGAT+TGG - chr8_2:52875107-52875126 Msa1254730:intron 50.0%
TCAGATGGTCACCGATGTGA+TGG - chr8_2:52875255-52875274 Msa1254730:intron 50.0%
!! GGAGATGGAGCGTTTTGCTT+CGG - chr8_2:52875405-52875424 Msa1254730:intron 50.0%
!! GAGATGGAGCGTTTTGCTTC+GGG - chr8_2:52875406-52875425 Msa1254730:intron 50.0%
CGATATGCGGCAAAGAGTTG+CGG - chr8_2:52875447-52875466 Msa1254730:intron 50.0%
TTCGTTTGACCTAGTCGTGG+TGG - chr8_2:52875723-52875742 Msa1254730:intron 50.0%
! GGAAGTATACCACCACGACT+AGG + chr8_2:52875735-52875754 None:intergenic 50.0%
!! GGAAGCGTCTATCCTTGTTC+AGG - chr8_2:52876350-52876369 Msa1254730:CDS 50.0%
GGGAAAAGGTAGCCTGAACA+AGG + chr8_2:52876365-52876384 None:intergenic 50.0%
!! TTGGCCTGGTGGTATTGACT+TGG - chr8_2:52876667-52876686 Msa1254730:CDS 50.0%
!! TGGCCTGGTGGTATTGACTT+GGG - chr8_2:52876668-52876687 Msa1254730:CDS 50.0%
!! GTGGTATTGACTTGGGACCT+TGG - chr8_2:52876675-52876694 Msa1254730:CDS 50.0%
! TTGAGGAGGAGCATACTCCA+AGG + chr8_2:52876695-52876714 None:intergenic 50.0%
TTGGAGTATGCTCCTCCTCA+AGG - chr8_2:52876694-52876713 Msa1254730:CDS 50.0%
ATGCTCCTCCTCAAGGTCTT+AGG - chr8_2:52876701-52876720 Msa1254730:CDS 50.0%
ACGAACCTAAGACCTTGAGG+AGG + chr8_2:52876709-52876728 None:intergenic 50.0%
GTCTTAGGTTCGTTTCTCCC+CGG - chr8_2:52876716-52876735 Msa1254730:CDS 50.0%
GTTTCTCCCCGGAGCTAATT+TGG - chr8_2:52876727-52876746 Msa1254730:CDS 50.0%
TAGCCCACCCAAATTAGCTC+CGG + chr8_2:52876738-52876757 None:intergenic 50.0%
! GTTTTTCTTGGGTGGGGACT+GGG - chr8_2:52876971-52876990 Msa1254730:CDS 50.0%
! TTTTTCTTGGGTGGGGACTG+GGG - chr8_2:52876972-52876991 Msa1254730:CDS 50.0%
AGACGATGAGAGGTGGATCG+TGG + chr8_2:52874273-52874292 None:intergenic 55.0%
!! CACGACGTATGGGCTAGATG+AGG + chr8_2:52875046-52875065 None:intergenic 55.0%
CATCTAGCCCATACGTCGTG+TGG - chr8_2:52875046-52875065 Msa1254730:intron 55.0%
!! TGAACCCATTTGGGTTGGCC+TGG - chr8_2:52876653-52876672 Msa1254730:CDS 55.0%
ACCACCAGGCCAACCCAAAT+GGG + chr8_2:52876660-52876679 None:intergenic 55.0%
TACCACCAGGCCAACCCAAA+TGG + chr8_2:52876661-52876680 None:intergenic 55.0%
GGTCCCAAGTCAATACCACC+AGG + chr8_2:52876674-52876693 None:intergenic 55.0%
TCCCCGGAGCTAATTTGGGT+GGG - chr8_2:52876732-52876751 Msa1254730:CDS 55.0%
AGCCCACCCAAATTAGCTCC+GGG + chr8_2:52876737-52876756 None:intergenic 55.0%
! GGTTTTTCTTGGGTGGGGAC+TGG - chr8_2:52876970-52876989 Msa1254730:CDS 55.0%
! TTTTCTTGGGTGGGGACTGG+GGG - chr8_2:52876973-52876992 Msa1254730:CDS 55.0%
! TCTTGGGAGCACAGGCTAGT+TGG - chr8_2:52877126-52877145 Msa1254730:intron 55.0%
!! ACCCATTTGGGTTGGCCTGG+TGG - chr8_2:52876656-52876675 Msa1254730:CDS 60.0%
CTCCCCGGAGCTAATTTGGG+TGG - chr8_2:52876731-52876750 Msa1254730:CDS 60.0%
GCCCACCCAAATTAGCTCCG+GGG + chr8_2:52876736-52876755 None:intergenic 60.0%
TCTTGGGTGGGGACTGGGGG+TGG - chr8_2:52876976-52876995 Msa1254730:CDS 70.0%
TGGGTGGGGACTGGGGGTGG+TGG - chr8_2:52876979-52876998 Msa1254730:CDS 75.0%
GGGTGGGGACTGGGGGTGGT+GGG - chr8_2:52876980-52876999 Msa1254730:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 52874089 52877816 52874089 ID=Msa1254730;Name=Msa1254730
chr8_2 mRNA 52874089 52877816 52874089 ID=Msa1254730-mRNA-1;Parent=Msa1254730;Name=Msa1254730-mRNA-1;_AED=0.04;_eAED=0.04;_QI=229|1|1|1|0.5|0.33|3|502|344
chr8_2 exon 52874089 52874765 52874089 ID=Msa1254730-mRNA-1:exon:16290;Parent=Msa1254730-mRNA-1
chr8_2 exon 52876258 52877120 52876258 ID=Msa1254730-mRNA-1:exon:16289;Parent=Msa1254730-mRNA-1
chr8_2 exon 52877591 52877816 52877591 ID=Msa1254730-mRNA-1:exon:16288;Parent=Msa1254730-mRNA-1
chr8_2 five_prime_UTR 52877591 52877816 52877591 ID=Msa1254730-mRNA-1:five_prime_utr;Parent=Msa1254730-mRNA-1
chr8_2 five_prime_UTR 52877118 52877120 52877118 ID=Msa1254730-mRNA-1:five_prime_utr;Parent=Msa1254730-mRNA-1
chr8_2 CDS 52876258 52877117 52876258 ID=Msa1254730-mRNA-1:cds;Parent=Msa1254730-mRNA-1
chr8_2 CDS 52874591 52874765 52874591 ID=Msa1254730-mRNA-1:cds;Parent=Msa1254730-mRNA-1
chr8_2 three_prime_UTR 52874089 52874590 52874089 ID=Msa1254730-mRNA-1:three_prime_utr;Parent=Msa1254730-mRNA-1
Gene Sequence

>Msa1254730

ATGGCGGCGGGTGAAGATATTGCAATGTCGGGTTTGAAGTCTTTGTCGGGTCAATCTTGTGATACGTGGAAGGAAGGGATGGAAAGAAACCAATCTCAAGTAGATGTATTGCAAGAAAAAGTTAATGAGATAAAGGCGAGTATACAGGGTTCAGAAGAAGATTCGAAGAAGGAATTAGAGGTTTTGTGGAGAAGAGTCAAGACTACTGCTACGTTGCTGAACTACTTAAAGTCAAAAGCTAGAATCATGGCTATTCCTCATCTAGCCCATACGTCGTGTGGAATCAAAAAGTTGGATGGGGTAGGGGTTGTTGACAAAGACGGAGTTCCGTTATCGGATTGGTCTAGGAATGTTGATCTTTCTTCTTTTGATGAAGAAGATGCAGAATCTTGGATAGGAATTAGCCGTCATCAAGGTTTGTTAGACGAACAGGATGCTGTTTATATAGGTGAGATACTGAACTCTGTTCAGATGGTCACCGATGTGATGGAAGCTCTTGTGAAAAGGGTTTTATTGGCGGAATCGGAAACTGCACTTGAAAAGGAAAAAGTGAGTTTACGTCAGGAAAAAATTATGCTAAAGTCTGCTCAGTTAGAGAACATGTCTATGAAATTAGAGGAGATGGAGCGTTTTGCTTCGGGTACAAATAGTATTTTGAACGATATGCGGCAAAGAGTTGCGGATTTGATGGAAGAAACAACTAGACAGAGAGAGCGAGCTGCTGAAAATGAAGAAGAGCTTAGTCGAGTGAAACAGGAATTTGTTTCTCTCAAGTCATATGTTAGTAGTCTAATCACAGTGAGGGAAACTTTACTATCCTCAGAAAAGCAATTCCAAACTATTGAGAAGCTGTTTGAACGGCTAGTTGGAAAGACTACTCAATTGGAGGGTGAGAAAATGCAGAAAGAGGCTGAAGTTCAGAAACTTATGGAAGAGAATGTGAAGCTGAGTACTTTGCTTGACAAGAAAGAAGCTCAACTTCTGGCATTGAATGAACAATGTAAGATGATGGCTTTGAGCGCTTCAAACATGTAA

Protein sequence

>Msa1254730

MAAGEDIAMSGLKSLSGQSCDTWKEGMERNQSQVDVLQEKVNEIKASIQGSEEDSKKELEVLWRRVKTTATLLNYLKSKARIMAIPHLAHTSCGIKKLDGVGVVDKDGVPLSDWSRNVDLSSFDEEDAESWIGISRHQGLLDEQDAVYIGEILNSVQMVTDVMEALVKRVLLAESETALEKEKVSLRQEKIMLKSAQLENMSMKLEEMERFASGTNSILNDMRQRVADLMEETTRQRERAAENEEELSRVKQEFVSLKSYVSSLITVRETLLSSEKQFQTIEKLFERLVGKTTQLEGEKMQKEAEVQKLMEENVKLSTLLDKKEAQLLALNEQCKMMALSASNM*