AlfalfaGEDB | Msa1141300

M. sativa cultivar zhongmu-4 / Msa1141300

KEGG: K15559
GO: -
PFAM: PF04818.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1141300	XP_003622057.1	98.482	527	8	0	1	527	1	527	0.0	1075

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1141300	sp\|Q9CSU0\|RPR1B_MOUSE	41.880	117	68	0	3	119	2	118	1.94e-24	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1141300	G7L125	98.482	527	8	0	1	527	1	527	0.0	1075

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0079270	Msa1141300	0.801138	1.037132e-48	-8.615850e-47
Msa0212750	Msa1141300	0.835850	1.319836e-56	-8.615850e-47
Msa0387880	Msa1141300	0.835727	1.418379e-56	-8.615850e-47
Msa0421300	Msa1141300	0.805287	1.435982e-49	-8.615850e-47
Msa0467260	Msa1141300	0.807384	5.190444e-50	-8.615850e-47
Msa1012590	Msa1141300	0.802677	5.008050e-49	-8.615850e-47
Msa1089740	Msa1141300	0.802643	5.089610e-49	-8.615850e-47
Msa1094540	Msa1141300	0.973429	2.053915e-136	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1141300	MtrunA17_Chr7g0224081	98.482	527	8	0	1	527	1	527	0.0	1075
Msa1141300	MtrunA17_Chr6g0460511	39.246	451	230	9	1	436	1	422	1.34e-77	253
Msa1141300	MtrunA17_Chr7g0254551	41.013	395	210	5	5	395	6	381	2.07e-76	249
Msa1141300	MtrunA17_Chr3g0124461	41.472	299	164	2	5	292	7	305	2.58e-71	237

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1141300	AT3G26990.1	51.636	550	206	14	1	527	1	513	9.18e-154	449
Msa1141300	AT3G26990.2	51.636	550	206	14	1	527	1	513	9.18e-154	449
Msa1141300	AT5G10060.1	35.650	446	219	10	1	429	1	395	2.59e-75	246
Msa1141300	AT5G65180.1	34.867	413	216	6	1	408	1	365	7.44e-74	241
Msa1141300	AT5G65180.2	27.451	255	138	4	155	408	29	237	4.35e-21	94.4

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Find 177 sgRNAs with CRISPR-Local

Find 663 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGCAGGTGTCATGG+AGG	0.691823	7_4:+14590036	None:intergenic
AAACCTTGATAAGCATTCAT+TGG	0.394995	7_4:+14589455	None:intergenic
AACAATATGGCATATAGCTA+TGG	0.506720	7_4:-14589554	Msa1141300:CDS
AACACCCTCTGATGCTAAAG+AGG	0.488288	7_4:+14589847	None:intergenic
AAGAAACCAAGCGCGTCGAC+TGG	0.565511	7_4:-14595158	Msa1141300:intron
AAGGGAGGTAATGGTTGTTG+AGG	0.503407	7_4:+14589731	None:intergenic
AATAAAACCATCATCCTCAA+AGG	0.583636	7_4:+14589159	None:intergenic
AATAGTAATGTCAAGGGTAG+AGG	0.495674	7_4:+14589293	None:intergenic
AATGAACTCCAGGGGCATAA+TGG	0.451706	7_4:-14591026	Msa1141300:CDS
AATGCCAATTTCTTCTCACG+AGG	0.676026	7_4:+14595304	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATACATACATAAGAGAAGCA+AGG	+	chr7_4:14588978-14588997	None:intergenic	30.0%
TTATATGCTGCAAATGATTG+TGG	-	chr7_4:14589227-14589246	Msa1141300:three_prime_UTR	30.0%
TGAAGGATAATGAGATTGTT+TGG	-	chr7_4:14589426-14589445	Msa1141300:CDS	30.0%
TACAGATAGCATTAAGTACA+AGG	+	chr7_4:14590388-14590407	None:intergenic	30.0%
ATATCGTCTTTCATTGGATT+AGG	-	chr7_4:14590816-14590835	Msa1141300:intron	30.0%
TATCGTCTTTCATTGGATTA+GGG	-	chr7_4:14590817-14590836	Msa1141300:intron	30.0%
GATAGACATAAACAGAGTTA+GGG	+	chr7_4:14591129-14591148	None:intergenic	30.0%
TGATACTCTGTTTGTATTCT+TGG	-	chr7_4:14591229-14591248	Msa1141300:intron	30.0%
TCAAAACAATGACATTTAGC+AGG	-	chr7_4:14591390-14591409	Msa1141300:intron	30.0%
ATTAGCTGTGCAACTTTAAT+CGG	-	chr7_4:14591541-14591560	Msa1141300:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	14588778	14598818	14588778	ID=Msa1141300;Name=Msa1141300
chr7_4	mRNA	14588778	14598818	14588778	ID=Msa1141300-mRNA-1;Parent=Msa1141300;Name=Msa1141300-mRNA-1;_AED=0.04;_eAED=0.04;_QI=258\|1\|1\|1\|0.71\|0.62\|8\|607\|527
chr7_4	exon	14588778	14590161	14588778	ID=Msa1141300-mRNA-1:exon:3399;Parent=Msa1141300-mRNA-1
chr7_4	exon	14590821	14590856	14590821	ID=Msa1141300-mRNA-1:exon:3398;Parent=Msa1141300-mRNA-1
chr7_4	exon	14590935	14591074	14590935	ID=Msa1141300-mRNA-1:exon:3397;Parent=Msa1141300-mRNA-1
chr7_4	exon	14591861	14592017	14591861	ID=Msa1141300-mRNA-1:exon:3396;Parent=Msa1141300-mRNA-1
chr7_4	exon	14592104	14592253	14592104	ID=Msa1141300-mRNA-1:exon:3395;Parent=Msa1141300-mRNA-1
chr7_4	exon	14595159	14595406	14595159	ID=Msa1141300-mRNA-1:exon:3394;Parent=Msa1141300-mRNA-1
chr7_4	exon	14595953	14596074	14595953	ID=Msa1141300-mRNA-1:exon:3393;Parent=Msa1141300-mRNA-1
chr7_4	exon	14598607	14598818	14598607	ID=Msa1141300-mRNA-1:exon:3392;Parent=Msa1141300-mRNA-1
chr7_4	five_prime_UTR	14598607	14598818	14598607	ID=Msa1141300-mRNA-1:five_prime_utr;Parent=Msa1141300-mRNA-1
chr7_4	five_prime_UTR	14596029	14596074	14596029	ID=Msa1141300-mRNA-1:five_prime_utr;Parent=Msa1141300-mRNA-1
chr7_4	CDS	14595953	14596028	14595953	ID=Msa1141300-mRNA-1:cds;Parent=Msa1141300-mRNA-1
chr7_4	CDS	14595159	14595406	14595159	ID=Msa1141300-mRNA-1:cds;Parent=Msa1141300-mRNA-1
chr7_4	CDS	14592104	14592253	14592104	ID=Msa1141300-mRNA-1:cds;Parent=Msa1141300-mRNA-1
chr7_4	CDS	14591861	14592017	14591861	ID=Msa1141300-mRNA-1:cds;Parent=Msa1141300-mRNA-1
chr7_4	CDS	14590935	14591074	14590935	ID=Msa1141300-mRNA-1:cds;Parent=Msa1141300-mRNA-1
chr7_4	CDS	14590821	14590856	14590821	ID=Msa1141300-mRNA-1:cds;Parent=Msa1141300-mRNA-1
chr7_4	CDS	14589385	14590161	14589385	ID=Msa1141300-mRNA-1:cds;Parent=Msa1141300-mRNA-1
chr7_4	three_prime_UTR	14588778	14589384	14588778	ID=Msa1141300-mRNA-1:three_prime_utr;Parent=Msa1141300-mRNA-1

Gene Sequence

>Msa1141300

ATGGGTAGCACATTCAATCCACAGATTTTAGTGGAAAAACTAGCCAAGCTGAATAGCTCGCAGACAAGCATAGAGACTTTGTCACATTGGTGCATATTTCATATGAACAAAGCCAAGCAAGTTGTTGAAACATGGGCTAAACAGTTCCATTGCTCTCCTCGTGAGAAGAAATTGGCATTTCTGTTTCTTGCAAATGATATTTTACAAAACAGCAGGCGAAAGGGTTCTGAATTTGTTGGTGAGTTTTGGAAGGTTCTTCCAGATTCTCTTCGAGATGTCATTCAAAATGGAGACGACAATGCAAGAAACCAAGCGCGTCGACTGATTGGTATATGGGATGAAAGAAAAGTTTTTGGTTCTCGTGGTCAAATTCTTAAGGAAGAATTTGTTGGGAGGCATGCGGAAAACAATAACCGTGATGTGAAACCTTTGAACGCGAAACCTACAAATGTGAAACCTATGAACGTAAAACTGAGGCCATCTGCTGGGAATGCATTGGATAGAATAGTTTCAGGGTATCAGTATGTTTATGGAGGGCAGACAGATGAAGATGCTGTATTAAGCAAATGCCGGAATGCCATTAGTTCTCTTGAGAAAGTAGATAAGGAAATAGATCATGATAGTAATTCAGGGAAATTCCATGGATCTGCAGTAGTGAATGAACTCCAGGGGCATAATGGCATACTAAAGGACTGCATTGATCAGTTAACAGAAATAGAATCATCAAGAGCCAGCCTTGTCTCTCACCTGAGAGAGGCTCTTCAGGATCAGGAATTCAAGCTGGGTCAAGTCCGTAGCCAGATTCAGGCTGCACGTGTTCAGTGGGAGCATTCCAACAATACCTGCCAACAATTACTGAATGGCAACAATATTCAGTCATTAGTTGAACAGAGCTCAAAGGAAATTCAAACCTCCATGACACCTGCAAGTTTTATCTCTGGCGGGGAGCAATCAGCCCCTTTAATGTATTCACCACAAGTGATGTTTTCTCAAAATTCTGGACACAGCGAGGAAGATCCACGCAAGTCTGCAGCCGCTGCAGTGGCGGCAAAGCTGACTGCTTCCACATCCTCTGCCCAGATGCTGTCTTATGTGCTATCCTCTTTAGCATCAGAGGGTGTTATAGGAAATCAGATGACAGGGTCTTCTGCTGATTATCATGCCGAGAAGAGGACAAAGCTTGAGAATGACCAATCTTATGTGCCATCTCAGAATCCTCAACAACCATTACCTCCCTTTTCACTTTCTGAACCTACCCAAACATCCAACCAGCAATCTACTCCAAATGAGCCACCACCTCCACCCTCATCATCACCTCCCCCATTACCCCCACTGCCACCAACACCTCAACAATACCCTGTGCCGCAGTTCATGCAGAATGTTGGATCCGTTAACAATATGGCATATAGCTATGGTGTGATGCAACAGCCATCGATGGCAACCTATCCTGCAGCTGGGGTTTCCATGAACAACATATCTCCTTATACACCTCCAATGAATGCTTATCAAGGTTTTCAGGGCCCTGATGGAAATTACTACAACCAGCCCTCCTCAATGCCTATGGTCCCCATTTCTCGCCAATAA

Protein sequence

>Msa1141300

MGSTFNPQILVEKLAKLNSSQTSIETLSHWCIFHMNKAKQVVETWAKQFHCSPREKKLAFLFLANDILQNSRRKGSEFVGEFWKVLPDSLRDVIQNGDDNARNQARRLIGIWDERKVFGSRGQILKEEFVGRHAENNNRDVKPLNAKPTNVKPMNVKLRPSAGNALDRIVSGYQYVYGGQTDEDAVLSKCRNAISSLEKVDKEIDHDSNSGKFHGSAVVNELQGHNGILKDCIDQLTEIESSRASLVSHLREALQDQEFKLGQVRSQIQAARVQWEHSNNTCQQLLNGNNIQSLVEQSSKEIQTSMTPASFISGGEQSAPLMYSPQVMFSQNSGHSEEDPRKSAAAAVAAKLTASTSSAQMLSYVLSSLASEGVIGNQMTGSSADYHAEKRTKLENDQSYVPSQNPQQPLPPFSLSEPTQTSNQQSTPNEPPPPPSSSPPPLPPLPPTPQQYPVPQFMQNVGSVNNMAYSYGVMQQPSMATYPAAGVSMNNISPYTPPMNAYQGFQGPDGNYYNQPSSMPMVPISRQ*