Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080190 | sp|Q8LB54|PRP38_ARATH | 84.783 | 184 | 28 | 0 | 1 | 184 | 1 | 184 | 1.80e-116 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080190 | A2Q158 | 98.701 | 385 | 5 | 0 | 1 | 385 | 1 | 385 | 0.0 | 752 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029630 | Msa0080190 | 0.804093 | 2.549073e-49 | -8.615850e-47 |
| Msa0080190 | Msa0093850 | 0.811321 | 7.423529e-51 | -8.615850e-47 |
| Msa0080190 | Msa0131590 | 0.896136 | 4.925074e-76 | -8.615850e-47 |
| Msa0080190 | Msa0138360 | 0.801746 | 7.783969e-49 | -8.615850e-47 |
| Msa0080190 | Msa0147980 | 0.810661 | 1.031725e-50 | -8.615850e-47 |
| Msa0080190 | Msa0172980 | 0.828344 | 9.474310e-55 | -8.615850e-47 |
| Msa0080190 | Msa0341690 | 0.806871 | 6.664007e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080190 | MtrunA17_Chr1g0192441 | 98.701 | 385 | 5 | 0 | 1 | 385 | 1 | 385 | 0.0 | 752 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080190 | AT2G40650.1 | 84.783 | 184 | 28 | 0 | 1 | 184 | 1 | 184 | 1.83e-117 | 345 |
Find 132 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTATCTCTTTCCCTTGC+AGG | 0.202403 | 1_2:-58440324 | None:intergenic |
| GCATTCTATTTGCGTCTTAC+TGG | 0.216581 | 1_2:+58439227 | Msa0080190:CDS |
| TGAACTGTATGGCTTGAATT+TGG | 0.239668 | 1_2:+58442411 | Msa0080190:three_prime_UTR |
| AAAAGGAAAGGGACAGAGAT+AGG | 0.253347 | 1_2:+58442026 | Msa0080190:CDS |
| TCCTCAGCTCCATCTCTTCT+AGG | 0.306646 | 1_2:-58442250 | None:intergenic |
| TTCGATGACGATTTCTTTCT+CGG | 0.306868 | 1_2:-58439068 | None:intergenic |
| TCTATTAGTACTCTGATAAA+AGG | 0.308496 | 1_2:+58442690 | Msa0080190:three_prime_UTR |
| TGCACTTTGTCTAGGTTCTA+AGG | 0.312757 | 1_2:-58440121 | None:intergenic |
| ACATGAAGGGAGTGGGTTTC+CGG | 0.331461 | 1_2:-58439015 | None:intergenic |
| TACTGATGTGTATCATTATC+TGG | 0.333973 | 1_2:+58439256 | Msa0080190:CDS |
| GAAACTGCGGCGGAAATTAC+CGG | 0.336356 | 1_2:+58439301 | Msa0080190:CDS |
| GGCAAATCAAAACAAATCTA+TGG | 0.338548 | 1_2:-58442603 | None:intergenic |
| CCTCGAATGCTCTTCGCTGC+TGG | 0.349121 | 1_2:-58438842 | None:intergenic |
| ATAGAGATCGGGACAGAGAT+AGG | 0.353256 | 1_2:+58442002 | Msa0080190:CDS |
| CTGTTTGCTTCTGCAATCTC+TGG | 0.359328 | 1_2:-58442346 | None:intergenic |
| CCCTATCTCTTTCCCTTGCA+GGG | 0.370664 | 1_2:-58440323 | None:intergenic |
| AGATCTATCAGCACACATAT+TGG | 0.372870 | 1_2:+58438906 | Msa0080190:CDS |
| GAAGGAAAAGAAAGAAAAGA+AGG | 0.374717 | 1_2:+58442291 | Msa0080190:CDS |
| GCTTCTGCAATCTCTGGATC+TGG | 0.377528 | 1_2:-58442340 | None:intergenic |
| TGAGGAGGAAGAGGAGAATG+AGG | 0.386800 | 1_2:+58440158 | Msa0080190:CDS |
| GCCCTGCAAGGGAAAGAGAT+AGG | 0.391241 | 1_2:+58440322 | Msa0080190:CDS |
| GAAAGAAAAGAAGGAAAAGA+AGG | 0.397502 | 1_2:+58442300 | Msa0080190:CDS |
| ATGCAGGTATGTGAGGATAC+TGG | 0.405268 | 1_2:+58439202 | Msa0080190:intron |
| TGAATTGACAATTGCCGCTC+AGG | 0.407360 | 1_2:-58442513 | None:intergenic |
| TTTCTTCCCTCAGACGATAT+CGG | 0.414737 | 1_2:-58442063 | None:intergenic |
| CTGAGGGAAGAAAAGGATTA+TGG | 0.415767 | 1_2:+58442073 | Msa0080190:CDS |
| AGCCGTTGTATAATGATTAT+AGG | 0.416127 | 1_2:+58439279 | Msa0080190:CDS |
| GCTCCATGGCTTTGTCGACT+AGG | 0.420325 | 1_2:-58438961 | None:intergenic |
| GACCACCTCGGCGGCACTTA+CGG | 0.427204 | 1_2:+58438986 | Msa0080190:CDS |
| AGAGTGTTCAATTGATGTAA+TGG | 0.429494 | 1_2:+58442661 | Msa0080190:three_prime_UTR |
| AAAGGAAAGGGACAGAGATA+GGG | 0.437635 | 1_2:+58442027 | Msa0080190:CDS |
| TCTTCAAGTGCACTTTGTCT+AGG | 0.438667 | 1_2:-58440129 | None:intergenic |
| GGTTGTGAATCGTGATGAAT+TGG | 0.439341 | 1_2:-58438801 | None:intergenic |
| CAGAGATTGCAGAAGCAAAC+AGG | 0.439672 | 1_2:+58442347 | Msa0080190:CDS |
| GCGGCACTTACGGTGGCAAC+CGG | 0.442983 | 1_2:+58438996 | Msa0080190:CDS |
| AAACAGGATACGAGCATCAC+TGG | 0.445067 | 1_2:+58442363 | Msa0080190:CDS |
| CTCCATGGCTTTGTCGACTA+GGG | 0.448233 | 1_2:-58438960 | None:intergenic |
| GCGGCAATTGTCAATTCAAC+AGG | 0.451593 | 1_2:+58442518 | Msa0080190:three_prime_UTR |
| CTCAATAACTTACGTCCATC+CGG | 0.452000 | 1_2:-58439320 | None:intergenic |
| AGAAAGGAAAGCACCTTCTC+AGG | 0.452898 | 1_2:-58440204 | None:intergenic |
| ACCTTCTCAGGCTCCTCAGC+AGG | 0.454985 | 1_2:-58440192 | None:intergenic |
| AGTTCAGATCACATCTTAAG+TGG | 0.458888 | 1_2:-58442394 | None:intergenic |
| AGGTGGACTCTTGAATCTCT+TGG | 0.461088 | 1_2:+58440096 | Msa0080190:intron |
| AGAACAATGCTTCGGCTTAA+CGG | 0.471701 | 1_2:+58438931 | Msa0080190:CDS |
| CCAGCAGCGAAGAGCATTCG+AGG | 0.474837 | 1_2:+58438842 | Msa0080190:CDS |
| CTCTGTCCCGATCTCTATCT+CGG | 0.475661 | 1_2:-58441997 | None:intergenic |
| TGTATGGCTTGAATTTGGAC+TGG | 0.487500 | 1_2:+58442416 | Msa0080190:three_prime_UTR |
| CAAGGAGTCGAAGTAGAAGC+AGG | 0.498926 | 1_2:+58442167 | Msa0080190:CDS |
| TCGATGACGATTTCTTTCTC+GGG | 0.499616 | 1_2:-58439067 | None:intergenic |
| GAGAAGGCAGGGAGCGCGAG+AGG | 0.505596 | 1_2:+58442104 | Msa0080190:CDS |
| ATCGTGACCGTGGTAGGAGG+AGG | 0.511017 | 1_2:+58442137 | Msa0080190:CDS |
| ATATCGTCTGAGGGAAGAAA+AGG | 0.514906 | 1_2:+58442066 | Msa0080190:CDS |
| AACACTCTAGTTGTCAGTAC+AGG | 0.516645 | 1_2:-58442646 | None:intergenic |
| AAAGGGACAGAGATAGGGAG+AGG | 0.519341 | 1_2:+58442032 | Msa0080190:CDS |
| CAGAGATAGGGAAAAGGAAA+GGG | 0.522303 | 1_2:+58442015 | Msa0080190:CDS |
| TAGAGATCGGGACAGAGATA+GGG | 0.522697 | 1_2:+58442003 | Msa0080190:CDS |
| AGCGTAAGTCCTAGAAGAGA+TGG | 0.522785 | 1_2:+58442241 | Msa0080190:CDS |
| GCCGAGGTGGTCGAGCTCCA+TGG | 0.522793 | 1_2:-58438975 | None:intergenic |
| TATTGGAAAGAACAATGCTT+CGG | 0.527020 | 1_2:+58438923 | Msa0080190:CDS |
| AGAAGGAAAAGAAGGATGAC+GGG | 0.527671 | 1_2:+58442308 | Msa0080190:CDS |
| TGTAGGTGCAGCGGTATGCT+TGG | 0.533282 | 1_2:+58442569 | Msa0080190:three_prime_UTR |
| CTATGCCGCGGATTAAGAAA+AGG | 0.538102 | 1_2:+58439502 | Msa0080190:CDS |
| TGCAGGTATGTGAGGATACT+GGG | 0.544095 | 1_2:+58439203 | Msa0080190:intron |
| CACCGTAAGTGCCGCCGAGG+TGG | 0.544664 | 1_2:-58438988 | None:intergenic |
| CACTGCTCTTGCGATATGAA+TGG | 0.549939 | 1_2:+58442731 | Msa0080190:three_prime_UTR |
| TAGACAAAGTGCACTTGAAG+AGG | 0.550517 | 1_2:+58440131 | Msa0080190:CDS |
| CCCTGCAAGGGAAAGAGATA+GGG | 0.555278 | 1_2:+58440323 | Msa0080190:CDS |
| GTATGGCTTGAATTTGGACT+GGG | 0.555839 | 1_2:+58442417 | Msa0080190:three_prime_UTR |
| ATGGTCGTGAGAGAGAAGGC+AGG | 0.557251 | 1_2:+58442092 | Msa0080190:CDS |
| TATGACAGAGAGCGTGGACG+TGG | 0.558775 | 1_2:+58441974 | Msa0080190:CDS |
| TCCTAGAAGAGATGGAGCTG+AGG | 0.561364 | 1_2:+58442249 | Msa0080190:CDS |
| TCGGGACAGAGATAGGGAAA+AGG | 0.563174 | 1_2:+58442009 | Msa0080190:CDS |
| GCCTGCTGAGGAGCCTGAGA+AGG | 0.563693 | 1_2:+58440191 | Msa0080190:CDS |
| GACGAGGCACATGAAGGGAG+TGG | 0.564286 | 1_2:-58439023 | None:intergenic |
| AAGAAGGAAAAGAAGGATGA+CGG | 0.567699 | 1_2:+58442307 | Msa0080190:CDS |
| GACGTGGCCGAGATAGAGAT+CGG | 0.570627 | 1_2:+58441990 | Msa0080190:CDS |
| GATCGCAAGGAACATGATGG+TGG | 0.570891 | 1_2:+58442190 | Msa0080190:CDS |
| AATCGTGATGAATTGGATGA+TGG | 0.573412 | 1_2:-58438794 | None:intergenic |
| GATTTGTATGATATAGATGA+AGG | 0.573942 | 1_2:-58442624 | None:intergenic |
| ATCGCAAGGAACATGATGGT+GGG | 0.574370 | 1_2:+58442191 | Msa0080190:CDS |
| ACAGAGATAGGGAAAAGGAA+AGG | 0.577809 | 1_2:+58442014 | Msa0080190:CDS |
| AACCCTAGTCGACAAAGCCA+TGG | 0.577816 | 1_2:+58438958 | Msa0080190:CDS |
| ACAGAGATCGTGACCGTGGT+AGG | 0.578698 | 1_2:+58442131 | Msa0080190:CDS |
| TGGATCAGTGCGATTTGCCA+TGG | 0.579045 | 1_2:-58438822 | None:intergenic |
| CTGCAATCTCTGGATCTGGA+TGG | 0.579331 | 1_2:-58442336 | None:intergenic |
| TGGTGAGCCAAAGAAGAAGA+AGG | 0.579870 | 1_2:+58442273 | Msa0080190:CDS |
| AGTAGCTCCTCCTCCTACCA+CGG | 0.582815 | 1_2:-58442144 | None:intergenic |
| AGAAGAGATGGAGCTGAGGA+TGG | 0.583701 | 1_2:+58442253 | Msa0080190:CDS |
| ATCGTGGGCGAAGCCCTGCA+AGG | 0.584499 | 1_2:+58440310 | Msa0080190:CDS |
| AAGTAGAAGCAGGGATCGCA+AGG | 0.585476 | 1_2:+58442177 | Msa0080190:CDS |
| TTTCATGACGAGGCACATGA+AGG | 0.588448 | 1_2:-58439029 | None:intergenic |
| GGCAATAGCATGTTACCTCA+AGG | 0.590742 | 1_2:+58442453 | Msa0080190:three_prime_UTR |
| AATCTCTGGATCTGGATGGT+CGG | 0.593545 | 1_2:-58442332 | None:intergenic |
| ACGTGGCCGAGATAGAGATC+GGG | 0.596361 | 1_2:+58441991 | Msa0080190:CDS |
| GTTTATAGGATTATCATCGT+GGG | 0.596566 | 1_2:+58440295 | Msa0080190:intron |
| ACAGAGACCGATATCGTCTG+AGG | 0.596802 | 1_2:+58442056 | Msa0080190:CDS |
| ACGAGGCACATGAAGGGAGT+GGG | 0.599318 | 1_2:-58439022 | None:intergenic |
| GAATTGACAATTGCCGCTCA+GGG | 0.600465 | 1_2:-58442512 | None:intergenic |
| GAGATCGTGACCGTGGTAGG+AGG | 0.602297 | 1_2:+58442134 | Msa0080190:CDS |
| TCGTGGGCGAAGCCCTGCAA+GGG | 0.603091 | 1_2:+58440311 | Msa0080190:CDS |
| TGGTCGTGAGAGAGAAGGCA+GGG | 0.605694 | 1_2:+58442093 | Msa0080190:CDS |
| TTCATGACGAGGCACATGAA+GGG | 0.606717 | 1_2:-58439028 | None:intergenic |
| TGCTTTGACACATGTTGATG+AGG | 0.607496 | 1_2:+58439437 | Msa0080190:CDS |
| GATTATGGTCGTGAGAGAGA+AGG | 0.609683 | 1_2:+58442088 | Msa0080190:CDS |
| GTAGGAGGAGGAGCTACTCA+AGG | 0.610437 | 1_2:+58442149 | Msa0080190:CDS |
| AAGGGACAGAGATAGGGAGA+GGG | 0.613155 | 1_2:+58442033 | Msa0080190:CDS |
| GGTTTATAGGATTATCATCG+TGG | 0.614925 | 1_2:+58440294 | Msa0080190:intron |
| AACAGGATACGAGCATCACT+GGG | 0.622392 | 1_2:+58442364 | Msa0080190:CDS |
| AAGATGTGATCTGAACTGTA+TGG | 0.623132 | 1_2:+58442400 | Msa0080190:exon |
| AGAGATTATGACAGAGAGCG+TGG | 0.623322 | 1_2:+58441968 | Msa0080190:CDS |
| TTCCTATAATCATTATACAA+CGG | 0.623715 | 1_2:-58439281 | None:intergenic |
| AAGGAGTCGAAGTAGAAGCA+GGG | 0.630233 | 1_2:+58442168 | Msa0080190:CDS |
| AGGGATCGCAAGGAACATGA+TGG | 0.633153 | 1_2:+58442187 | Msa0080190:CDS |
| TGCCACCGTAAGTGCCGCCG+AGG | 0.634024 | 1_2:-58438991 | None:intergenic |
| CACCTCGGCGGCACTTACGG+TGG | 0.637349 | 1_2:+58438989 | Msa0080190:CDS |
| AGAGACAGAGATCGTGACCG+TGG | 0.637818 | 1_2:+58442127 | Msa0080190:CDS |
| CAGAGACCGATATCGTCTGA+GGG | 0.649302 | 1_2:+58442057 | Msa0080190:CDS |
| GGATAATGAACAGCCTGCTG+AGG | 0.651475 | 1_2:+58440179 | Msa0080190:CDS |
| TTCATCACGATTCACAACCA+TGG | 0.652686 | 1_2:+58438805 | Msa0080190:exon |
| ATGTACTTGTGTAGGTGCAG+CGG | 0.660123 | 1_2:+58442560 | Msa0080190:three_prime_UTR |
| CTGCGGCGGAAATTACCGGA+TGG | 0.660635 | 1_2:+58439305 | Msa0080190:CDS |
| GGACTGGGTTACAAAAGACA+AGG | 0.668930 | 1_2:+58442432 | Msa0080190:three_prime_UTR |
| ATACAAGTATGTACTTGTGT+AGG | 0.675592 | 1_2:+58442552 | Msa0080190:three_prime_UTR |
| TCGCAAGGAACATGATGGTG+GGG | 0.683038 | 1_2:+58442192 | Msa0080190:CDS |
| GACGTGATAGTCGTAGACAC+AGG | 0.685755 | 1_2:+58440352 | Msa0080190:CDS |
| GCCATGGAGCTCGACCACCT+CGG | 0.691184 | 1_2:+58438974 | Msa0080190:CDS |
| ATGATTATAGGAAACTGCGG+CGG | 0.708986 | 1_2:+58439291 | Msa0080190:CDS |
| GTCAAACGTCACAAACCTTG+AGG | 0.710882 | 1_2:-58442468 | None:intergenic |
| ATAATGATTATAGGAAACTG+CGG | 0.718715 | 1_2:+58439288 | Msa0080190:CDS |
| TGTGCTGATAGATCTTTGAA+CGG | 0.719231 | 1_2:-58438898 | None:intergenic |
| GCTGTGATATTGCTATGCCG+CGG | 0.720225 | 1_2:+58439490 | Msa0080190:CDS |
| ATGGAGCTCGACCACCTCGG+CGG | 0.724394 | 1_2:+58438977 | Msa0080190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAGAAACATATATT+TGG | - | chr1_2:58441730-58441749 | None:intergenic | 10.0% |
| !!! | TAATATTTTTTGAAAAATGC+AGG | + | chr1_2:58439186-58439205 | Msa0080190:intron | 15.0% |
| !! | TTCCTTTATTAAATAAATGT+TGG | + | chr1_2:58440793-58440812 | Msa0080190:intron | 15.0% |
| !! | ATCCAACATTTATTTAATAA+AGG | - | chr1_2:58440798-58440817 | None:intergenic | 15.0% |
| !!! | TTGAAATTTTGATTTATAGA+TGG | + | chr1_2:58441523-58441542 | Msa0080190:intron | 15.0% |
| !! | TTCCTATAATCATTATACAA+CGG | - | chr1_2:58439284-58439303 | None:intergenic | 20.0% |
| !!! | ACTTCTTTTTATTTGCTTTT+TGG | + | chr1_2:58440460-58440479 | Msa0080190:intron | 20.0% |
| !!! | CTTCTTTTTATTTGCTTTTT+GGG | + | chr1_2:58440461-58440480 | Msa0080190:intron | 20.0% |
| !! | AATCCAAATCTTCTATAAAT+AGG | - | chr1_2:58440773-58440792 | None:intergenic | 20.0% |
| !!! | ATTGCCTATTTTTTTTAATC+TGG | + | chr1_2:58440824-58440843 | Msa0080190:intron | 20.0% |
| !!! | TTGCCTATTTTTTTTAATCT+GGG | + | chr1_2:58440825-58440844 | Msa0080190:intron | 20.0% |
| !! | AAAATTAATAATTCTCCACT+TGG | + | chr1_2:58440851-58440870 | Msa0080190:intron | 20.0% |
| !! | ATCCTGTATTTCATAAAAAT+TGG | + | chr1_2:58441091-58441110 | Msa0080190:intron | 20.0% |
| !! | TCCTGTATTTCATAAAAATT+GGG | + | chr1_2:58441092-58441111 | Msa0080190:intron | 20.0% |
| !! | ATTAAAATACGTTTCAAAAG+TGG | + | chr1_2:58441162-58441181 | Msa0080190:intron | 20.0% |
| !!! | TTTTTAGTTTTTTGTTAGAG+AGG | + | chr1_2:58441394-58441413 | Msa0080190:intron | 20.0% |
| !! | TTAAAGTGACATGTAATAAT+TGG | - | chr1_2:58441439-58441458 | None:intergenic | 20.0% |
| !! | ATGATAACATCAATGATAAA+AGG | - | chr1_2:58441549-58441568 | None:intergenic | 20.0% |
| !! | TAAAAGAAACATATATTTGG+CGG | - | chr1_2:58441727-58441746 | None:intergenic | 20.0% |
| !!! | TCATTAGTGATAAATTTTGT+TGG | + | chr1_2:58441874-58441893 | Msa0080190:intron | 20.0% |
| !!! | TTACTAAACTTTTGCTTTTT+TGG | + | chr1_2:58441903-58441922 | Msa0080190:intron | 20.0% |
| !!! | TTTTTTCAACAAGGTTTTGA+GGG | - | chr1_2:58438874-58438893 | None:intergenic | 25.0% |
| !!! | ATTTTTTCAACAAGGTTTTG+AGG | - | chr1_2:58438875-58438894 | None:intergenic | 25.0% |
| ! | AAAATCCGAAACTAAAAAGT+GGG | - | chr1_2:58439124-58439143 | None:intergenic | 25.0% |
| ! | ATAATGATTATAGGAAACTG+CGG | + | chr1_2:58439288-58439307 | Msa0080190:CDS | 25.0% |
| !!! | GTTCTTTCTTTTTTCTCTAT+TGG | + | chr1_2:58439545-58439564 | Msa0080190:intron | 25.0% |
| !! | TCTACTATCTTTTCTACTAT+AGG | - | chr1_2:58439628-58439647 | None:intergenic | 25.0% |
| !!! | TTGTCTTTTGTTTTCTTTGT+AGG | + | chr1_2:58439930-58439949 | Msa0080190:intron | 25.0% |
| ! | ACTGAAAACTAATCATACAA+GGG | - | chr1_2:58440025-58440044 | None:intergenic | 25.0% |
| ! | AACTGAAAACTAATCATACA+AGG | - | chr1_2:58440026-58440045 | None:intergenic | 25.0% |
| !!! | TTTTCAGTTTCATATTTCTG+TGG | + | chr1_2:58440037-58440056 | Msa0080190:intron | 25.0% |
| !!! | TTTTGTCATTTGTTTTTTGC+AGG | + | chr1_2:58440076-58440095 | Msa0080190:intron | 25.0% |
| ! | AAAAGTAGATTGCTTAAGAA+AGG | - | chr1_2:58440223-58440242 | None:intergenic | 25.0% |
| ! | TTGATTGTTGAATGGTTTAT+AGG | + | chr1_2:58440281-58440300 | Msa0080190:intron | 25.0% |
| ! | TTATATATCTATTTCCACTG+CGG | + | chr1_2:58440599-58440618 | Msa0080190:intron | 25.0% |
| ! | TAAATAGGATCATGATAACA+GGG | - | chr1_2:58440758-58440777 | None:intergenic | 25.0% |
| ! | ATAAATAGGATCATGATAAC+AGG | - | chr1_2:58440759-58440778 | None:intergenic | 25.0% |
| ! | GATCCTATTTATAGAAGATT+TGG | + | chr1_2:58440767-58440786 | Msa0080190:intron | 25.0% |
| !!! | TGCCTATTTTTTTTAATCTG+GGG | + | chr1_2:58440826-58440845 | Msa0080190:intron | 25.0% |
| ! | AACCCCAGATTAAAAAAAAT+AGG | - | chr1_2:58440831-58440850 | None:intergenic | 25.0% |
| !!! | TGTTTCCTTTTTTAAAGCTT+CGG | - | chr1_2:58440994-58441013 | None:intergenic | 25.0% |
| ! | CCTGTATTTCATAAAAATTG+GGG | + | chr1_2:58441093-58441112 | Msa0080190:intron | 25.0% |
| ! | CTGTATTTCATAAAAATTGG+GGG | + | chr1_2:58441094-58441113 | Msa0080190:intron | 25.0% |
| ! | TGTATTTCATAAAAATTGGG+GGG | + | chr1_2:58441095-58441114 | Msa0080190:intron | 25.0% |
| !!! | AAGTTCAGATTTTCAAGAAA+GGG | - | chr1_2:58441226-58441245 | None:intergenic | 25.0% |
| !!! | AAAGTTCAGATTTTCAAGAA+AGG | - | chr1_2:58441227-58441246 | None:intergenic | 25.0% |
| !!! | AGTGTTTTTATAACTGTTCA+AGG | - | chr1_2:58441297-58441316 | None:intergenic | 25.0% |
| ! | TACTAACATGCTGATATAAA+GGG | - | chr1_2:58441328-58441347 | None:intergenic | 25.0% |
| ! | TATCTCAGTTACATATTTGA+CGG | - | chr1_2:58441358-58441377 | None:intergenic | 25.0% |
| ! | GATTTGTATGATATAGATGA+AGG | - | chr1_2:58442627-58442646 | None:intergenic | 25.0% |
| ! | TCTATTAGTACTCTGATAAA+AGG | + | chr1_2:58442690-58442709 | Msa0080190:three_prime_UTR | 25.0% |
| ! | AAAGGAAAAGAAAAATGTTG+TGG | + | chr1_2:58442708-58442727 | Msa0080190:three_prime_UTR | 25.0% |
| !!! | AACGGAGAATTTTTTCAACA+AGG | - | chr1_2:58438883-58438902 | None:intergenic | 30.0% |
| TATTGGAAAGAACAATGCTT+CGG | + | chr1_2:58438923-58438942 | Msa0080190:CDS | 30.0% | |
| !!! | AATTCCCCACTTTTTAGTTT+CGG | + | chr1_2:58439116-58439135 | Msa0080190:intron | 30.0% |
| AAATCCGAAACTAAAAAGTG+GGG | - | chr1_2:58439123-58439142 | None:intergenic | 30.0% | |
| GAAAATCCGAAACTAAAAAG+TGG | - | chr1_2:58439125-58439144 | None:intergenic | 30.0% | |
| ! | TTAGTTTCGGATTTTCATTC+TGG | + | chr1_2:58439129-58439148 | Msa0080190:intron | 30.0% |
| ! | TAGTTTCGGATTTTCATTCT+GGG | + | chr1_2:58439130-58439149 | Msa0080190:intron | 30.0% |
| TACTGATGTGTATCATTATC+TGG | + | chr1_2:58439256-58439275 | Msa0080190:CDS | 30.0% | |
| AGCCGTTGTATAATGATTAT+AGG | + | chr1_2:58439279-58439298 | Msa0080190:CDS | 30.0% | |
| ! | TAATACCTTTTCTTAATCCG+CGG | - | chr1_2:58439510-58439529 | None:intergenic | 30.0% |
| !! | GTTTAGTTATTTTGCTTGCT+CGG | + | chr1_2:58439571-58439590 | Msa0080190:intron | 30.0% |
| AACAACATTAGATAGAGAGT+TGG | + | chr1_2:58439595-58439614 | Msa0080190:intron | 30.0% | |
| ACAACATTAGATAGAGAGTT+GGG | + | chr1_2:58439596-58439615 | Msa0080190:intron | 30.0% | |
| AGATAGTAGAAACTAGACTT+CGG | + | chr1_2:58439638-58439657 | Msa0080190:intron | 30.0% | |
| GTTTCGCTAATAGTATTTCT+AGG | - | chr1_2:58439757-58439776 | None:intergenic | 30.0% | |
| ! | TGGTTTTTGATAGAAGACTA+TGG | + | chr1_2:58439817-58439836 | Msa0080190:intron | 30.0% |
| !! | TTTGTAGGATTTTGAGTAGT+AGG | + | chr1_2:58439945-58439964 | Msa0080190:intron | 30.0% |
| GTTTATAGGATTATCATCGT+GGG | + | chr1_2:58440295-58440314 | Msa0080190:intron | 30.0% | |
| AGGATAGCTATTTAAATGAC+GGG | - | chr1_2:58440437-58440456 | None:intergenic | 30.0% | |
| CAGGATAGCTATTTAAATGA+CGG | - | chr1_2:58440438-58440457 | None:intergenic | 30.0% | |
| !! | AGCAAATAAAAAGAAGTACC+AGG | - | chr1_2:58440457-58440476 | None:intergenic | 30.0% |
| GGATCATTGAACTTTACTAT+AGG | - | chr1_2:58440657-58440676 | None:intergenic | 30.0% | |
| ATCAAACAGTTATGTTGCAT+TGG | + | chr1_2:58440724-58440743 | Msa0080190:intron | 30.0% | |
| ATAGTCATAATTCAACCAAG+TGG | - | chr1_2:58440869-58440888 | None:intergenic | 30.0% | |
| TATGACTATTGAACATCCAT+TGG | + | chr1_2:58440880-58440899 | Msa0080190:intron | 30.0% | |
| CATCAAATTAAACTCTCCAA+TGG | - | chr1_2:58440899-58440918 | None:intergenic | 30.0% | |
| !! | TTCTTCCGAAGCTTTAAAAA+AGG | + | chr1_2:58440986-58441005 | Msa0080190:intron | 30.0% |
| ! | CCCCAATTTTTATGAAATAC+AGG | - | chr1_2:58441096-58441115 | None:intergenic | 30.0% |
| !!! | GTATTTTAATGCCCAAAAGT+TGG | - | chr1_2:58441152-58441171 | None:intergenic | 30.0% |
| GTACTAACATGCTGATATAA+AGG | - | chr1_2:58441329-58441348 | None:intergenic | 30.0% | |
| CATGCACATATACATCTAAA+TGG | + | chr1_2:58441470-58441489 | Msa0080190:intron | 30.0% | |
| ! | AATTTCTCTCCTTGTGATTT+TGG | + | chr1_2:58441629-58441648 | Msa0080190:intron | 30.0% |
| TCCATTTAACTCAAAAACCA+CGG | - | chr1_2:58441847-58441866 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGTGTCCTTTTCAT+AGG | + | chr1_2:58441918-58441937 | Msa0080190:intron | 30.0% |
| !!! | TTTTTGGTGTCCTTTTCATA+GGG | + | chr1_2:58441919-58441938 | Msa0080190:intron | 30.0% |
| ! | TTCTTTTCCTTCTTCTTCTT+TGG | - | chr1_2:58442283-58442302 | None:intergenic | 30.0% |
| GAAGGAAAAGAAAGAAAAGA+AGG | + | chr1_2:58442291-58442310 | Msa0080190:CDS | 30.0% | |
| GAAAGAAAAGAAGGAAAAGA+AGG | + | chr1_2:58442300-58442319 | Msa0080190:CDS | 30.0% | |
| ATACAAGTATGTACTTGTGT+AGG | + | chr1_2:58442552-58442571 | Msa0080190:three_prime_UTR | 30.0% | |
| GGCAAATCAAAACAAATCTA+TGG | - | chr1_2:58442606-58442625 | None:intergenic | 30.0% | |
| ! | AGAGTGTTCAATTGATGTAA+TGG | + | chr1_2:58442661-58442680 | Msa0080190:three_prime_UTR | 30.0% |
| !!! | AAAACTACATCGTTTTGGAG+AGG | + | chr1_2:58438748-58438767 | Msa0080190:five_prime_UTR | 35.0% |
| AATCGTGATGAATTGGATGA+TGG | - | chr1_2:58438797-58438816 | None:intergenic | 35.0% | |
| ! | TGTGCTGATAGATCTTTGAA+CGG | - | chr1_2:58438901-58438920 | None:intergenic | 35.0% |
| AGATCTATCAGCACACATAT+TGG | + | chr1_2:58438906-58438925 | Msa0080190:CDS | 35.0% | |
| TTCGATGACGATTTCTTTCT+CGG | - | chr1_2:58439071-58439090 | None:intergenic | 35.0% | |
| TTGAAAAATGCAGGTATGTG+AGG | + | chr1_2:58439195-58439214 | Msa0080190:intron | 35.0% | |
| CAACATTAGATAGAGAGTTG+GGG | + | chr1_2:58439597-58439616 | Msa0080190:intron | 35.0% | |
| AGATCTAGAGATCAATGAGT+TGG | + | chr1_2:58439785-58439804 | Msa0080190:intron | 35.0% | |
| GAAAACTAATCATACAAGGG+AGG | - | chr1_2:58440022-58440041 | None:intergenic | 35.0% | |
| !!! | TGTCATTTGTTTTTTGCAGG+TGG | + | chr1_2:58440079-58440098 | Msa0080190:intron | 35.0% |
| TGAATGTGATTCTGATGTTC+TGG | + | chr1_2:58440257-58440276 | Msa0080190:intron | 35.0% | |
| !! | GTTCTGGTTTGATTGTTGAA+TGG | + | chr1_2:58440273-58440292 | Msa0080190:intron | 35.0% |
| GGTTTATAGGATTATCATCG+TGG | + | chr1_2:58440294-58440313 | Msa0080190:intron | 35.0% | |
| GAAGTAACAGCACATTTACA+AGG | - | chr1_2:58440390-58440409 | None:intergenic | 35.0% | |
| CGTCATTTAAATAGCTATCC+TGG | + | chr1_2:58440436-58440455 | Msa0080190:intron | 35.0% | |
| ! | TTGTGCATGAGTGTATCTTT+TGG | + | chr1_2:58440499-58440518 | Msa0080190:intron | 35.0% |
| ! | TGTGCATGAGTGTATCTTTT+GGG | + | chr1_2:58440500-58440519 | Msa0080190:intron | 35.0% |
| !! | TGTATCTTTTGGGTCTATGT+TGG | + | chr1_2:58440510-58440529 | Msa0080190:intron | 35.0% |
| GCGATATTATCTTTATGCGA+AGG | + | chr1_2:58441117-58441136 | Msa0080190:intron | 35.0% | |
| TTAATGCCCAAAAGTTGGAT+AGG | - | chr1_2:58441147-58441166 | None:intergenic | 35.0% | |
| GAGATTCCTAGCATATCATA+AGG | + | chr1_2:58441198-58441217 | Msa0080190:intron | 35.0% | |
| ! | CACAAGAGTGTGAAAAACAT+AGG | + | chr1_2:58441247-58441266 | Msa0080190:intron | 35.0% |
| !!! | TTTTTGTTAGAGAGGCATTG+TGG | + | chr1_2:58441402-58441421 | Msa0080190:intron | 35.0% |
| GCACATATACATCTAAATGG+TGG | + | chr1_2:58441473-58441492 | Msa0080190:intron | 35.0% | |
| CATCTAAATGGTGGTAAAGT+TGG | + | chr1_2:58441482-58441501 | Msa0080190:intron | 35.0% | |
| ! | GATTTGCTCTTCGTAGTATA+AGG | - | chr1_2:58441667-58441686 | None:intergenic | 35.0% |
| CATATATTTGGCGGAAATCA+CGG | - | chr1_2:58441718-58441737 | None:intergenic | 35.0% | |
| TGTGATATAGCATCACTGTT+TGG | + | chr1_2:58441814-58441833 | Msa0080190:intron | 35.0% | |
| !!! | TCCGTGGTTTTTGAGTTAAA+TGG | + | chr1_2:58441843-58441862 | Msa0080190:intron | 35.0% |
| TAGTCACAATCCCTATGAAA+AGG | - | chr1_2:58441932-58441951 | None:intergenic | 35.0% | |
| AAGAAGGAAAAGAAGGATGA+CGG | + | chr1_2:58442307-58442326 | Msa0080190:CDS | 35.0% | |
| AGTTCAGATCACATCTTAAG+TGG | - | chr1_2:58442397-58442416 | None:intergenic | 35.0% | |
| AAGATGTGATCTGAACTGTA+TGG | + | chr1_2:58442400-58442419 | Msa0080190:exon | 35.0% | |
| TGAACTGTATGGCTTGAATT+TGG | + | chr1_2:58442411-58442430 | Msa0080190:three_prime_UTR | 35.0% | |
| !!! | ACATCGTTTTGGAGAGGATT+AGG | + | chr1_2:58438754-58438773 | Msa0080190:five_prime_UTR | 40.0% |
| !!! | CATCGTTTTGGAGAGGATTA+GGG | + | chr1_2:58438755-58438774 | Msa0080190:five_prime_UTR | 40.0% |
| GGTTGTGAATCGTGATGAAT+TGG | - | chr1_2:58438804-58438823 | None:intergenic | 40.0% | |
| TTCATCACGATTCACAACCA+TGG | + | chr1_2:58438805-58438824 | Msa0080190:exon | 40.0% | |
| AGAACAATGCTTCGGCTTAA+CGG | + | chr1_2:58438931-58438950 | Msa0080190:CDS | 40.0% | |
| !! | TCTGAAGCATTTTCATGACG+AGG | - | chr1_2:58439042-58439061 | None:intergenic | 40.0% |
| TCGATGACGATTTCTTTCTC+GGG | - | chr1_2:58439070-58439089 | None:intergenic | 40.0% | |
| GCATTCTATTTGCGTCTTAC+TGG | + | chr1_2:58439227-58439246 | Msa0080190:CDS | 40.0% | |
| ATGATTATAGGAAACTGCGG+CGG | + | chr1_2:58439291-58439310 | Msa0080190:CDS | 40.0% | |
| CTCAATAACTTACGTCCATC+CGG | - | chr1_2:58439323-58439342 | None:intergenic | 40.0% | |
| TGCTTTGACACATGTTGATG+AGG | + | chr1_2:58439437-58439456 | Msa0080190:CDS | 40.0% | |
| TAGTAGAAACTAGACTTCGG+TGG | + | chr1_2:58439641-58439660 | Msa0080190:intron | 40.0% | |
| AAACTAGACTTCGGTGGTTT+GGG | + | chr1_2:58439647-58439666 | Msa0080190:intron | 40.0% | |
| GCATGTAGAGAGAAAACTTG+TGG | + | chr1_2:58439669-58439688 | Msa0080190:intron | 40.0% | |
| GGTAAGGAGAGTAAATCAGA+TGG | + | chr1_2:58439699-58439718 | Msa0080190:intron | 40.0% | |
| AAGGAGAGTAAATCAGATGG+AGG | + | chr1_2:58439702-58439721 | Msa0080190:intron | 40.0% | |
| AGGAGAGTAAATCAGATGGA+GGG | + | chr1_2:58439703-58439722 | Msa0080190:intron | 40.0% | |
| ! | GGATAAGGCTTGGTTATTGT+CGG | + | chr1_2:58439875-58439894 | Msa0080190:intron | 40.0% |
| TACTCTGTGCTTTGCATGAT+AGG | + | chr1_2:58439902-58439921 | Msa0080190:intron | 40.0% | |
| !! | AGGATTTTGAGTAGTAGGTG+AGG | + | chr1_2:58439950-58439969 | Msa0080190:intron | 40.0% |
| AGGATAGAGAAGCAAGACAA+AGG | - | chr1_2:58440002-58440021 | None:intergenic | 40.0% | |
| TGCACTTTGTCTAGGTTCTA+AGG | - | chr1_2:58440124-58440143 | None:intergenic | 40.0% | |
| TCTTCAAGTGCACTTTGTCT+AGG | - | chr1_2:58440132-58440151 | None:intergenic | 40.0% | |
| TAGACAAAGTGCACTTGAAG+AGG | + | chr1_2:58440131-58440150 | Msa0080190:CDS | 40.0% | |
| ! | TGCACTTGAAGAGGATTTTG+AGG | + | chr1_2:58440140-58440159 | Msa0080190:CDS | 40.0% |
| !! | ACTTGAAGAGGATTTTGAGG+AGG | + | chr1_2:58440143-58440162 | Msa0080190:CDS | 40.0% |
| AAGCAGTTGTATACCGCAAA+TGG | - | chr1_2:58440634-58440653 | None:intergenic | 40.0% | |
| TAAAGTTCAATGATCCTGCC+AGG | + | chr1_2:58440661-58440680 | Msa0080190:intron | 40.0% | |
| ! | TGTGCAGTTGAGAAGTATGA+TGG | + | chr1_2:58440701-58440720 | Msa0080190:intron | 40.0% |
| TATCTTCAGTTGTCGAAGTG+CGG | + | chr1_2:58441035-58441054 | Msa0080190:intron | 40.0% | |
| AGGGAACCTTATGATATGCT+AGG | - | chr1_2:58441207-58441226 | None:intergenic | 40.0% | |
| ATAACTGTTCAAGGACTGCA+GGG | - | chr1_2:58441288-58441307 | None:intergenic | 40.0% | |
| TATAACTGTTCAAGGACTGC+AGG | - | chr1_2:58441289-58441308 | None:intergenic | 40.0% | |
| ! | TCTCCTTGTGATTTTGGATG+AGG | + | chr1_2:58441635-58441654 | Msa0080190:intron | 40.0% |
| ! | CTCCTTGTGATTTTGGATGA+GGG | + | chr1_2:58441636-58441655 | Msa0080190:intron | 40.0% |
| TTCCCTCATCCAAAATCACA+AGG | - | chr1_2:58441641-58441660 | None:intergenic | 40.0% | |
| AACTGAAATGTACTGTGTCG+TGG | + | chr1_2:58441770-58441789 | Msa0080190:intron | 40.0% | |
| ACAGAGATAGGGAAAAGGAA+AGG | + | chr1_2:58442014-58442033 | Msa0080190:CDS | 40.0% | |
| CAGAGATAGGGAAAAGGAAA+GGG | + | chr1_2:58442015-58442034 | Msa0080190:CDS | 40.0% | |
| AAAAGGAAAGGGACAGAGAT+AGG | + | chr1_2:58442026-58442045 | Msa0080190:CDS | 40.0% | |
| AAAGGAAAGGGACAGAGATA+GGG | + | chr1_2:58442027-58442046 | Msa0080190:CDS | 40.0% | |
| TTTCTTCCCTCAGACGATAT+CGG | - | chr1_2:58442066-58442085 | None:intergenic | 40.0% | |
| ATATCGTCTGAGGGAAGAAA+AGG | + | chr1_2:58442066-58442085 | Msa0080190:CDS | 40.0% | |
| CTGAGGGAAGAAAAGGATTA+TGG | + | chr1_2:58442073-58442092 | Msa0080190:CDS | 40.0% | |
| AGAAGGAAAAGAAGGATGAC+GGG | + | chr1_2:58442308-58442327 | Msa0080190:CDS | 40.0% | |
| TGTATGGCTTGAATTTGGAC+TGG | + | chr1_2:58442416-58442435 | Msa0080190:three_prime_UTR | 40.0% | |
| GTATGGCTTGAATTTGGACT+GGG | + | chr1_2:58442417-58442436 | Msa0080190:three_prime_UTR | 40.0% | |
| AACACTCTAGTTGTCAGTAC+AGG | - | chr1_2:58442649-58442668 | None:intergenic | 40.0% | |
| TTCATGACGAGGCACATGAA+GGG | - | chr1_2:58439031-58439050 | None:intergenic | 45.0% | |
| TTTCATGACGAGGCACATGA+AGG | - | chr1_2:58439032-58439051 | None:intergenic | 45.0% | |
| ATGCAGGTATGTGAGGATAC+TGG | + | chr1_2:58439202-58439221 | Msa0080190:intron | 45.0% | |
| TGCAGGTATGTGAGGATACT+GGG | + | chr1_2:58439203-58439222 | Msa0080190:intron | 45.0% | |
| ! | CTATGCCGCGGATTAAGAAA+AGG | + | chr1_2:58439502-58439521 | Msa0080190:CDS | 45.0% |
| GAAACTAGACTTCGGTGGTT+TGG | + | chr1_2:58439646-58439665 | Msa0080190:intron | 45.0% | |
| GAGAAAACTTGTGGATGCTG+CGG | + | chr1_2:58439678-58439697 | Msa0080190:intron | 45.0% | |
| GGAGAGTAAATCAGATGGAG+GGG | + | chr1_2:58439704-58439723 | Msa0080190:intron | 45.0% | |
| GGTGTCAAATCACTAGAGGT+AGG | + | chr1_2:58439725-58439744 | Msa0080190:intron | 45.0% | |
| ! | CAATGAGTTGGAGAAACGCA+TGG | + | chr1_2:58439797-58439816 | Msa0080190:intron | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr1_2:58439866-58439885 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr1_2:58439867-58439886 | None:intergenic | 45.0% |
| ! | AGGTGGACTCTTGAATCTCT+TGG | + | chr1_2:58440096-58440115 | Msa0080190:intron | 45.0% |
| !! | AGAGGATTTTGAGGAGGAAG+AGG | + | chr1_2:58440149-58440168 | Msa0080190:CDS | 45.0% |
| !! | AGAAAGGAAAGCACCTTCTC+AGG | - | chr1_2:58440207-58440226 | None:intergenic | 45.0% |
| ACATAGTGTGTGTGTGAGCA+GGG | - | chr1_2:58440561-58440580 | None:intergenic | 45.0% | |
| TACATAGTGTGTGTGTGAGC+AGG | - | chr1_2:58440562-58440581 | None:intergenic | 45.0% | |
| ! | AGGCCATCCTATCCAACTTT+TGG | + | chr1_2:58441137-58441156 | Msa0080190:intron | 45.0% |
| ! | GGCCATCCTATCCAACTTTT+GGG | + | chr1_2:58441138-58441157 | Msa0080190:intron | 45.0% |
| TGCCCAAAAGTTGGATAGGA+TGG | - | chr1_2:58441143-58441162 | None:intergenic | 45.0% | |
| !! | TTGTTAGAGAGGCATTGTGG+TGG | + | chr1_2:58441405-58441424 | Msa0080190:intron | 45.0% |
| !! | GGTGGTAAAGTTGGTACTGA+TGG | + | chr1_2:58441491-58441510 | Msa0080190:intron | 45.0% |
| AGAGATTATGACAGAGAGCG+TGG | + | chr1_2:58441968-58441987 | Msa0080190:CDS | 45.0% | |
| ATAGAGATCGGGACAGAGAT+AGG | + | chr1_2:58442002-58442021 | Msa0080190:CDS | 45.0% | |
| TAGAGATCGGGACAGAGATA+GGG | + | chr1_2:58442003-58442022 | Msa0080190:CDS | 45.0% | |
| GATTATGGTCGTGAGAGAGA+AGG | + | chr1_2:58442088-58442107 | Msa0080190:CDS | 45.0% | |
| AAGGAGTCGAAGTAGAAGCA+GGG | + | chr1_2:58442168-58442187 | Msa0080190:CDS | 45.0% | |
| ATCGCAAGGAACATGATGGT+GGG | + | chr1_2:58442191-58442210 | Msa0080190:CDS | 45.0% | |
| AGCGTAAGTCCTAGAAGAGA+TGG | + | chr1_2:58442241-58442260 | Msa0080190:CDS | 45.0% | |
| TGGTGAGCCAAAGAAGAAGA+AGG | + | chr1_2:58442273-58442292 | Msa0080190:CDS | 45.0% | |
| AATCTCTGGATCTGGATGGT+CGG | - | chr1_2:58442335-58442354 | None:intergenic | 45.0% | |
| CTGTTTGCTTCTGCAATCTC+TGG | - | chr1_2:58442349-58442368 | None:intergenic | 45.0% | |
| CAGAGATTGCAGAAGCAAAC+AGG | + | chr1_2:58442347-58442366 | Msa0080190:CDS | 45.0% | |
| AAACAGGATACGAGCATCAC+TGG | + | chr1_2:58442363-58442382 | Msa0080190:CDS | 45.0% | |
| AACAGGATACGAGCATCACT+GGG | + | chr1_2:58442364-58442383 | Msa0080190:CDS | 45.0% | |
| GGACTGGGTTACAAAAGACA+AGG | + | chr1_2:58442432-58442451 | Msa0080190:three_prime_UTR | 45.0% | |
| GGCAATAGCATGTTACCTCA+AGG | + | chr1_2:58442453-58442472 | Msa0080190:three_prime_UTR | 45.0% | |
| GTCAAACGTCACAAACCTTG+AGG | - | chr1_2:58442471-58442490 | None:intergenic | 45.0% | |
| ! | AGTTTTTGTACTGCCCTGAG+CGG | + | chr1_2:58442499-58442518 | Msa0080190:three_prime_UTR | 45.0% |
| GAATTGACAATTGCCGCTCA+GGG | - | chr1_2:58442515-58442534 | None:intergenic | 45.0% | |
| TGAATTGACAATTGCCGCTC+AGG | - | chr1_2:58442516-58442535 | None:intergenic | 45.0% | |
| GCGGCAATTGTCAATTCAAC+AGG | + | chr1_2:58442518-58442537 | Msa0080190:three_prime_UTR | 45.0% | |
| ATGTACTTGTGTAGGTGCAG+CGG | + | chr1_2:58442560-58442579 | Msa0080190:three_prime_UTR | 45.0% | |
| CACTGCTCTTGCGATATGAA+TGG | + | chr1_2:58442731-58442750 | Msa0080190:three_prime_UTR | 45.0% | |
| TGGATCAGTGCGATTTGCCA+TGG | - | chr1_2:58438825-58438844 | None:intergenic | 50.0% | |
| AACCCTAGTCGACAAAGCCA+TGG | + | chr1_2:58438958-58438977 | Msa0080190:CDS | 50.0% | |
| !! | CTCCATGGCTTTGTCGACTA+GGG | - | chr1_2:58438963-58438982 | None:intergenic | 50.0% |
| ! | ACATGAAGGGAGTGGGTTTC+CGG | - | chr1_2:58439018-58439037 | None:intergenic | 50.0% |
| GAAACTGCGGCGGAAATTAC+CGG | + | chr1_2:58439301-58439320 | Msa0080190:CDS | 50.0% | |
| GCTGTGATATTGCTATGCCG+CGG | + | chr1_2:58439490-58439509 | Msa0080190:CDS | 50.0% | |
| AACTTGTGGATGCTGCGGTA+AGG | + | chr1_2:58439683-58439702 | Msa0080190:intron | 50.0% | |
| !! | GAGGGGTGTCAAATCACTAG+AGG | + | chr1_2:58439721-58439740 | Msa0080190:intron | 50.0% |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr1_2:58439862-58439881 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr1_2:58439868-58439887 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr1_2:58439865-58439884 | Msa0080190:intron | 50.0% | |
| TGAGGAGGAAGAGGAGAATG+AGG | + | chr1_2:58440158-58440177 | Msa0080190:CDS | 50.0% | |
| GGATAATGAACAGCCTGCTG+AGG | + | chr1_2:58440179-58440198 | Msa0080190:CDS | 50.0% | |
| CCCTATCTCTTTCCCTTGCA+GGG | - | chr1_2:58440326-58440345 | None:intergenic | 50.0% | |
| CCCTGCAAGGGAAAGAGATA+GGG | + | chr1_2:58440323-58440342 | Msa0080190:CDS | 50.0% | |
| TCCCTATCTCTTTCCCTTGC+AGG | - | chr1_2:58440327-58440346 | None:intergenic | 50.0% | |
| GACGTGATAGTCGTAGACAC+AGG | + | chr1_2:58440352-58440371 | Msa0080190:CDS | 50.0% | |
| AATGGCTCTTTATGCCGCAG+TGG | - | chr1_2:58440616-58440635 | None:intergenic | 50.0% | |
| GCGGCATAAAGAGCCATTTG+CGG | + | chr1_2:58440618-58440637 | Msa0080190:intron | 50.0% | |
| ACTGTCAGTGCAGAGAAACC+TGG | - | chr1_2:58440682-58440701 | None:intergenic | 50.0% | |
| ! | GTACTGTGTCGTGGTTTTCG+TGG | + | chr1_2:58441779-58441798 | Msa0080190:intron | 50.0% |
| CACTGTTTGGATAACGTCCG+TGG | + | chr1_2:58441827-58441846 | Msa0080190:intron | 50.0% | |
| CTCTGTCCCGATCTCTATCT+CGG | - | chr1_2:58442000-58442019 | None:intergenic | 50.0% | |
| TCGGGACAGAGATAGGGAAA+AGG | + | chr1_2:58442009-58442028 | Msa0080190:CDS | 50.0% | |
| AAAGGGACAGAGATAGGGAG+AGG | + | chr1_2:58442032-58442051 | Msa0080190:CDS | 50.0% | |
| AAGGGACAGAGATAGGGAGA+GGG | + | chr1_2:58442033-58442052 | Msa0080190:CDS | 50.0% | |
| ACAGAGACCGATATCGTCTG+AGG | + | chr1_2:58442056-58442075 | Msa0080190:CDS | 50.0% | |
| CAGAGACCGATATCGTCTGA+GGG | + | chr1_2:58442057-58442076 | Msa0080190:CDS | 50.0% | |
| CAAGGAGTCGAAGTAGAAGC+AGG | + | chr1_2:58442167-58442186 | Msa0080190:CDS | 50.0% | |
| AAGTAGAAGCAGGGATCGCA+AGG | + | chr1_2:58442177-58442196 | Msa0080190:CDS | 50.0% | |
| AGGGATCGCAAGGAACATGA+TGG | + | chr1_2:58442187-58442206 | Msa0080190:CDS | 50.0% | |
| GATCGCAAGGAACATGATGG+TGG | + | chr1_2:58442190-58442209 | Msa0080190:CDS | 50.0% | |
| ! | TCGCAAGGAACATGATGGTG+GGG | + | chr1_2:58442192-58442211 | Msa0080190:CDS | 50.0% |
| TCCTAGAAGAGATGGAGCTG+AGG | + | chr1_2:58442249-58442268 | Msa0080190:CDS | 50.0% | |
| TCCTCAGCTCCATCTCTTCT+AGG | - | chr1_2:58442253-58442272 | None:intergenic | 50.0% | |
| AGAAGAGATGGAGCTGAGGA+TGG | + | chr1_2:58442253-58442272 | Msa0080190:CDS | 50.0% | |
| CTGCAATCTCTGGATCTGGA+TGG | - | chr1_2:58442339-58442358 | None:intergenic | 50.0% | |
| GCTTCTGCAATCTCTGGATC+TGG | - | chr1_2:58442343-58442362 | None:intergenic | 50.0% | |
| !! | GCTCCATGGCTTTGTCGACT+AGG | - | chr1_2:58438964-58438983 | None:intergenic | 55.0% |
| ACGAGGCACATGAAGGGAGT+GGG | - | chr1_2:58439025-58439044 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr1_2:58439853-58439872 | Msa0080190:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr1_2:58439854-58439873 | Msa0080190:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr1_2:58439860-58439879 | Msa0080190:intron | 55.0% | |
| GCCCTGCAAGGGAAAGAGAT+AGG | + | chr1_2:58440322-58440341 | Msa0080190:CDS | 55.0% | |
| TCAGTGCAGAGAAACCTGGC+AGG | - | chr1_2:58440678-58440697 | None:intergenic | 55.0% | |
| ! | TATGACAGAGAGCGTGGACG+TGG | + | chr1_2:58441974-58441993 | Msa0080190:CDS | 55.0% |
| GACGTGGCCGAGATAGAGAT+CGG | + | chr1_2:58441990-58442009 | Msa0080190:CDS | 55.0% | |
| ACGTGGCCGAGATAGAGATC+GGG | + | chr1_2:58441991-58442010 | Msa0080190:CDS | 55.0% | |
| ATGGTCGTGAGAGAGAAGGC+AGG | + | chr1_2:58442092-58442111 | Msa0080190:CDS | 55.0% | |
| TGGTCGTGAGAGAGAAGGCA+GGG | + | chr1_2:58442093-58442112 | Msa0080190:CDS | 55.0% | |
| AGAGACAGAGATCGTGACCG+TGG | + | chr1_2:58442127-58442146 | Msa0080190:CDS | 55.0% | |
| ACAGAGATCGTGACCGTGGT+AGG | + | chr1_2:58442131-58442150 | Msa0080190:CDS | 55.0% | |
| AGTAGCTCCTCCTCCTACCA+CGG | - | chr1_2:58442147-58442166 | None:intergenic | 55.0% | |
| GTAGGAGGAGGAGCTACTCA+AGG | + | chr1_2:58442149-58442168 | Msa0080190:CDS | 55.0% | |
| TGTAGGTGCAGCGGTATGCT+TGG | + | chr1_2:58442569-58442588 | Msa0080190:three_prime_UTR | 55.0% | |
| CCTCGAATGCTCTTCGCTGC+TGG | - | chr1_2:58438845-58438864 | None:intergenic | 60.0% | |
| !! | CCAGCAGCGAAGAGCATTCG+AGG | + | chr1_2:58438842-58438861 | Msa0080190:CDS | 60.0% |
| GACGAGGCACATGAAGGGAG+TGG | - | chr1_2:58439026-58439045 | None:intergenic | 60.0% | |
| CTGCGGCGGAAATTACCGGA+TGG | + | chr1_2:58439305-58439324 | Msa0080190:CDS | 60.0% | |
| ACCTTCTCAGGCTCCTCAGC+AGG | - | chr1_2:58440195-58440214 | None:intergenic | 60.0% | |
| GAGATCGTGACCGTGGTAGG+AGG | + | chr1_2:58442134-58442153 | Msa0080190:CDS | 60.0% | |
| ATCGTGACCGTGGTAGGAGG+AGG | + | chr1_2:58442137-58442156 | Msa0080190:CDS | 60.0% | |
| GCCATGGAGCTCGACCACCT+CGG | + | chr1_2:58438974-58438993 | Msa0080190:CDS | 65.0% | |
| ATGGAGCTCGACCACCTCGG+CGG | + | chr1_2:58438977-58438996 | Msa0080190:CDS | 65.0% | |
| GACCACCTCGGCGGCACTTA+CGG | + | chr1_2:58438986-58439005 | Msa0080190:CDS | 65.0% | |
| GCGGCACTTACGGTGGCAAC+CGG | + | chr1_2:58438996-58439015 | Msa0080190:CDS | 65.0% | |
| GCCTGCTGAGGAGCCTGAGA+AGG | + | chr1_2:58440191-58440210 | Msa0080190:CDS | 65.0% | |
| ATCGTGGGCGAAGCCCTGCA+AGG | + | chr1_2:58440310-58440329 | Msa0080190:CDS | 65.0% | |
| TCGTGGGCGAAGCCCTGCAA+GGG | + | chr1_2:58440311-58440330 | Msa0080190:CDS | 65.0% | |
| GCCGAGGTGGTCGAGCTCCA+TGG | - | chr1_2:58438978-58438997 | None:intergenic | 70.0% | |
| ! | CACCGTAAGTGCCGCCGAGG+TGG | - | chr1_2:58438991-58439010 | None:intergenic | 70.0% |
| CACCTCGGCGGCACTTACGG+TGG | + | chr1_2:58438989-58439008 | Msa0080190:CDS | 70.0% | |
| ! | TGCCACCGTAAGTGCCGCCG+AGG | - | chr1_2:58438994-58439013 | None:intergenic | 70.0% |
| ! | GAGAAGGCAGGGAGCGCGAG+AGG | + | chr1_2:58442104-58442123 | Msa0080190:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 58438744 | 58442769 | 58438744 | ID=Msa0080190;Name=Msa0080190 |
| chr1_2 | mRNA | 58438744 | 58442769 | 58438744 | ID=Msa0080190-mRNA-1;Parent=Msa0080190;Name=Msa0080190-mRNA-1;_AED=0.04;_eAED=0.04;_QI=80|1|1|1|1|1|6|361|385 |
| chr1_2 | exon | 58438744 | 58439113 | 58438744 | ID=Msa0080190-mRNA-1:exon:18693;Parent=Msa0080190-mRNA-1 |
| chr1_2 | exon | 58439208 | 58439329 | 58439208 | ID=Msa0080190-mRNA-1:exon:18694;Parent=Msa0080190-mRNA-1 |
| chr1_2 | exon | 58439433 | 58439523 | 58439433 | ID=Msa0080190-mRNA-1:exon:18695;Parent=Msa0080190-mRNA-1 |
| chr1_2 | exon | 58440098 | 58440212 | 58440098 | ID=Msa0080190-mRNA-1:exon:18696;Parent=Msa0080190-mRNA-1 |
| chr1_2 | exon | 58440303 | 58440373 | 58440303 | ID=Msa0080190-mRNA-1:exon:18697;Parent=Msa0080190-mRNA-1 |
| chr1_2 | exon | 58441940 | 58442769 | 58441940 | ID=Msa0080190-mRNA-1:exon:18698;Parent=Msa0080190-mRNA-1 |
| chr1_2 | five_prime_UTR | 58438744 | 58438823 | 58438744 | ID=Msa0080190-mRNA-1:five_prime_utr;Parent=Msa0080190-mRNA-1 |
| chr1_2 | CDS | 58438824 | 58439113 | 58438824 | ID=Msa0080190-mRNA-1:cds;Parent=Msa0080190-mRNA-1 |
| chr1_2 | CDS | 58439208 | 58439329 | 58439208 | ID=Msa0080190-mRNA-1:cds;Parent=Msa0080190-mRNA-1 |
| chr1_2 | CDS | 58439433 | 58439523 | 58439433 | ID=Msa0080190-mRNA-1:cds;Parent=Msa0080190-mRNA-1 |
| chr1_2 | CDS | 58440098 | 58440212 | 58440098 | ID=Msa0080190-mRNA-1:cds;Parent=Msa0080190-mRNA-1 |
| chr1_2 | CDS | 58440303 | 58440373 | 58440303 | ID=Msa0080190-mRNA-1:cds;Parent=Msa0080190-mRNA-1 |
| chr1_2 | CDS | 58441940 | 58442408 | 58441940 | ID=Msa0080190-mRNA-1:cds;Parent=Msa0080190-mRNA-1 |
| chr1_2 | three_prime_UTR | 58442409 | 58442769 | 58442409 | ID=Msa0080190-mRNA-1:three_prime_utr;Parent=Msa0080190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
