AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0093850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093850 MtrunA17_Chr2g0334051 95.082 366 5 1 1 353 1 366 0.0 710
Msa0093850 MtrunA17_Chr1g0209971 56.313 396 130 8 1 353 1 396 3.40e-136 393
Msa0093850 MtrunA17_Chr7g0214981 51.979 379 147 6 1 353 1 370 9.43e-120 350
Msa0093850 MtrunA17_Chr1g0146801 89.286 84 8 1 1 84 1 83 7.59e-47 155
Msa0093850 MtrunA17_Chr7g0226581 94.737 76 4 0 1 76 205 280 2.28e-44 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093850 AT1G79650.2 69.022 368 96 7 1 353 1 365 3.09e-177 496
Msa0093850 AT1G79650.1 67.828 373 98 6 1 353 1 371 6.14e-177 496
Msa0093850 AT1G79650.4 64.232 397 96 7 1 353 1 395 2.15e-173 488
Msa0093850 AT1G16190.1 62.632 380 103 9 1 353 1 368 1.05e-160 454
Msa0093850 AT1G79650.3 63.271 373 95 7 1 353 1 351 7.93e-159 449
Msa0093850 AT1G16190.2 61.064 357 100 9 24 353 1 345 1.96e-144 412
Msa0093850 AT5G38470.1 56.218 386 127 10 1 353 1 377 1.43e-132 384
Msa0093850 AT3G02540.1 49.403 419 146 9 1 353 1 419 1.18e-126 370
Msa0093850 AT3G02540.3 49.043 418 148 8 1 353 1 418 1.56e-125 367
Msa0093850 AT5G38470.2 55.077 325 105 9 1 292 1 317 8.80e-104 308
Msa0093850 AT3G02540.2 45.485 299 101 7 1 237 1 299 4.39e-72 226
Msa0093850 AT5G16090.1 46.067 89 42 1 1 83 1 89 2.02e-19 84.7
Msa0093850 AT5G16090.1 44.444 99 51 3 250 347 74 169 1.64e-17 79.7

Find 122 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCAGGAGACAATTTC+TGG 0.118069 1_2:+76906589 Msa0093850:intron
ATCTGTTACTCCTCTCCTTT+GGG 0.209254 1_2:-76908053 None:intergenic
TGGACATGGGTGGTGGCAGC+TGG 0.265592 1_2:+76906177 Msa0093850:CDS
GTCACTACCGGAGTTGTTCC+TGG 0.267181 1_2:+76906436 Msa0093850:CDS
ATCTTCCCTGATTTAGGCTT+TGG 0.268135 1_2:+76907971 Msa0093850:three_prime_UTR
CCTGTTTCAGTTGGATTACT+TGG 0.271776 1_2:-76906409 None:intergenic
GCAGACTATTCAACAACTTA+TGG 0.276186 1_2:+76906157 Msa0093850:CDS
CAAAATCATTAGTAAATAAA+TGG 0.283916 1_2:-76907914 None:intergenic
TTAGCTATCTTCCCTGATTT+AGG 0.287134 1_2:+76907965 Msa0093850:three_prime_UTR
TCTGGTGTTGGCACAGTTAT+AGG 0.298020 1_2:-76904953 None:intergenic
AATCTGTTACTCCTCTCCTT+TGG 0.307508 1_2:-76908054 None:intergenic
TCTATTGCAGCCTGTACTTC+AGG 0.312035 1_2:+76906861 Msa0093850:intron
TAGTAATGTACAGGGGAAAA+TGG 0.316082 1_2:-76908095 None:intergenic
ACAGCAATTTCTGCTGCTTC+AGG 0.324791 1_2:-76906370 None:intergenic
TCCATTATTCCATTCGATTC+CGG 0.325086 1_2:+76903079 Msa0093850:five_prime_UTR
TGGGTGGTGGCAGCTGGGAC+AGG 0.346817 1_2:+76906183 Msa0093850:CDS
CAGGAGACAATTTCTGGTGC+TGG 0.348931 1_2:+76906595 Msa0093850:intron
CCGATTGCCTCCTGCTCAGC+TGG 0.353647 1_2:-76907501 None:intergenic
ATATTCAAGGGAGACGAGTT+AGG 0.365109 1_2:-76906463 None:intergenic
GAGGAACCAAAGCCTAAATC+AGG 0.376114 1_2:-76907977 None:intergenic
ATTGGCAGCCAACTACTTAC+TGG 0.376662 1_2:+76907729 Msa0093850:CDS
GCTGCTTCAAATTTAGTTGC+TGG 0.382013 1_2:+76906122 Msa0093850:CDS
AAACCACCCTCCTTGCAAAA+AGG 0.386993 1_2:-76907822 None:intergenic
TCTTGTTGTCATGCTTAGTA+AGG 0.396216 1_2:+76903421 Msa0093850:CDS
TCACTACCGGAGTTGTTCCT+GGG 0.402891 1_2:+76906437 Msa0093850:CDS
TCCGGAATCGAATGGAATAA+TGG 0.403100 1_2:-76903080 None:intergenic
CCAAGTAATCCAACTGAAAC+AGG 0.407427 1_2:+76906409 Msa0093850:CDS
TTAGATACCTGGAGAATTTG+TGG 0.408356 1_2:-76906771 None:intergenic
ACAATTTCTGGTGCTGGAGC+TGG 0.411957 1_2:+76906601 Msa0093850:CDS
ATGTGGTAGAGTTTCTGATT+TGG 0.412768 1_2:+76907877 Msa0093850:three_prime_UTR
TCTGGTGCTGGAGCTGGAGC+TGG 0.428394 1_2:+76906607 Msa0093850:CDS
TGTACTACAGGTGTGGAATC+TGG 0.428565 1_2:-76904971 None:intergenic
AGCACGAAGAGCACGATTGA+CGG 0.441378 1_2:-76906210 None:intergenic
AGACAAAAGCCATACTTTGT+AGG 0.443079 1_2:-76905118 None:intergenic
CAGAGTTCATCCTTCTGATT+CGG 0.444243 1_2:+76903159 Msa0093850:CDS
GAGTAACAGATTGTGGAGTT+AGG 0.447400 1_2:+76908065 Msa0093850:three_prime_UTR
AAGAATATTGAAGACATTCA+AGG 0.452792 1_2:+76903296 Msa0093850:CDS
TGACATGCAGCTAGAGGCTA+TGG 0.454971 1_2:+76907651 Msa0093850:intron
AGGGAAGAGAAGAGCGTGGT+GGG 0.458973 1_2:+76903013 Msa0093850:five_prime_UTR
GATGAACTCTGATTTCGAAA+TGG 0.460278 1_2:-76903147 None:intergenic
TAATGTGACGCCAGCTGAGC+AGG 0.461283 1_2:+76907491 Msa0093850:CDS
CCAGCTGAGCAGGAGGCAAT+CGG 0.461594 1_2:+76907501 Msa0093850:CDS
GACAATAAAGTCTCTGAAGA+TGG 0.470434 1_2:+76903395 Msa0093850:CDS
AGTGTTACTACAGATACTTA+TGG 0.475618 1_2:+76906095 Msa0093850:intron
CTGTTTCAGTTGGATTACTT+GGG 0.481500 1_2:-76906408 None:intergenic
GTGACCCCACCTGTTTCAGT+TGG 0.484296 1_2:-76906418 None:intergenic
AACTACTTACTGGAAAATGC+TGG 0.492726 1_2:+76907739 Msa0093850:CDS
TCCCTTGAATATGTTTCCAC+AGG 0.499007 1_2:+76906474 Msa0093850:CDS
CTTCTTGAGGAACAATCCCC+AGG 0.503164 1_2:+76906639 Msa0093850:CDS
TACCTGGAGAATTTGTGGAT+TGG 0.503302 1_2:-76906766 None:intergenic
AGCAGCAGAAATTGCTGTAC+CGG 0.508726 1_2:+76906375 Msa0093850:CDS
CTCACAGTGAAGACTTTGAA+AGG 0.508732 1_2:+76903121 Msa0093850:CDS
CAACGCATCTCCTGCAGTTG+TGG 0.510395 1_2:+76905093 Msa0093850:CDS
GTAGAGTTTCTGATTTGGAT+TGG 0.510419 1_2:+76907882 Msa0093850:three_prime_UTR
GAAAGTATACGACTATTGCT+AGG 0.510851 1_2:+76903046 Msa0093850:five_prime_UTR
CTGGTTCGCTTGACTTCTTG+AGG 0.511578 1_2:+76906626 Msa0093850:CDS
ACTCACTGAGTCTGTACTAC+AGG 0.513693 1_2:-76904983 None:intergenic
TTTCCGAGCTCCTGAAGTAC+AGG 0.521041 1_2:-76906871 None:intergenic
TACCTGTGGAAACATATTCA+AGG 0.524366 1_2:-76906476 None:intergenic
GGGTGGTGGCAGCTGGGACA+GGG 0.526645 1_2:+76906184 Msa0093850:CDS
TCTTTCTAGGGAAATTTATG+TGG 0.530069 1_2:+76907860 Msa0093850:three_prime_UTR
TTTGTAGGTGCCACAACTGC+AGG 0.530119 1_2:-76905103 None:intergenic
AAGTAATCTACAGCACGCTC+TGG 0.531024 1_2:-76906245 None:intergenic
ACTACTTACTGGAAAATGCT+GGG 0.533868 1_2:+76907740 Msa0093850:CDS
AGGAGAGGAGTAACAGATTG+TGG 0.534444 1_2:+76908058 Msa0093850:three_prime_UTR
AAGGGAAGAGAAGAGCGTGG+TGG 0.534461 1_2:+76903012 Msa0093850:five_prime_UTR
CTTCATGACTGACACCGATC+CGG 0.538152 1_2:-76903098 None:intergenic
TACTACAGATACTTATGGAC+AGG 0.538234 1_2:+76906100 Msa0093850:CDS
ATCAGCAATTGTTGTCCGCA+TGG 0.538362 1_2:-76903332 None:intergenic
ACCTGTGGAAACATATTCAA+GGG 0.538673 1_2:-76906475 None:intergenic
GGACATGGGTGGTGGCAGCT+GGG 0.540658 1_2:+76906178 Msa0093850:CDS
TTACTTGGGTATTGAGCAGC+CGG 0.541551 1_2:-76906394 None:intergenic
TATTCAAGGGAGACGAGTTA+GGG 0.546347 1_2:-76906462 None:intergenic
TCACCCTTCAGTACCGTCCA+TGG 0.546504 1_2:-76906962 None:intergenic
ATCCAATCCACAAATTCTCC+AGG 0.549169 1_2:+76906764 Msa0093850:CDS
GAACCCATGGACGGTACTGA+AGG 0.549758 1_2:+76906958 Msa0093850:CDS
CAACTTATGGACATGGGTGG+TGG 0.550778 1_2:+76906170 Msa0093850:CDS
ATGTGACCGTGATGAGCAAT+TGG 0.553039 1_2:+76907711 Msa0093850:CDS
GAGCTCGGAAAGCAAAATCC+AGG 0.561167 1_2:+76906883 Msa0093850:CDS
GAAACAGGTGGGGTCACTAC+CGG 0.561305 1_2:+76906424 Msa0093850:CDS
CACCCTTCAGTACCGTCCAT+GGG 0.562359 1_2:-76906961 None:intergenic
TCAGCAATTGTTGTCCGCAT+GGG 0.565758 1_2:-76903331 None:intergenic
GGGAAGGGAAGAGAAGAGCG+TGG 0.566820 1_2:+76903009 Msa0093850:five_prime_UTR
TCACAGTGAAGACTTTGAAA+GGG 0.581575 1_2:+76903122 Msa0093850:CDS
AGGAACCAAAGCCTAAATCA+GGG 0.583656 1_2:-76907976 None:intergenic
AAAGTATACGACTATTGCTA+GGG 0.584949 1_2:+76903047 Msa0093850:five_prime_UTR
GTTTCAAGCATTGCGGACAA+TGG 0.588792 1_2:+76906737 Msa0093850:intron
TATTCAACAACTTATGGACA+TGG 0.590819 1_2:+76906163 Msa0093850:CDS
CAACAATTGCTGATTCACAA+TGG 0.594059 1_2:+76903341 Msa0093850:CDS
GACACCGATCCGGAATCGAA+TGG 0.594283 1_2:-76903088 None:intergenic
TCAGTTGATAAATGAACCCA+TGG 0.600530 1_2:+76906945 Msa0093850:CDS
TATTCCATTCGATTCCGGAT+CGG 0.601383 1_2:+76903084 Msa0093850:five_prime_UTR
CTGAGCAGGAGGCAATCGGA+AGG 0.602554 1_2:+76907505 Msa0093850:CDS
TCAATAAGTCTCAAGAGACC+TGG 0.604931 1_2:-76906901 None:intergenic
CAGCCTGTACTTCAGGAGCT+CGG 0.605573 1_2:+76906868 Msa0093850:intron
GGTGTTGGCACAGTTATAGG+TGG 0.606530 1_2:-76904950 None:intergenic
CTGAGTCTGTACTACAGGTG+TGG 0.617878 1_2:-76904978 None:intergenic
TGATAGAGCCTCTGTCATAG+AGG 0.619305 1_2:+76907678 Msa0093850:CDS
GACATGCAGCTAGAGGCTAT+GGG 0.619380 1_2:+76907652 Msa0093850:intron
AACCCATGGACGGTACTGAA+GGG 0.627966 1_2:+76906959 Msa0093850:CDS
GGAGACGAGTTAGGGACCCC+AGG 0.628070 1_2:-76906454 None:intergenic
TGTGACGCCAGCTGAGCAGG+AGG 0.630237 1_2:+76907494 Msa0093850:CDS
AGTTATAGGTGGATTGCTAA+CGG 0.630709 1_2:-76904939 None:intergenic
CTACTTACTGGAAAATGCTG+GGG 0.630947 1_2:+76907741 Msa0093850:CDS
GGCGTCACATTAACAGCATG+AGG 0.631358 1_2:-76907480 None:intergenic
GTAATCCAACTGAAACAGGT+GGG 0.636270 1_2:+76906413 Msa0093850:CDS
AGTAATCCAACTGAAACAGG+TGG 0.636970 1_2:+76906412 Msa0093850:CDS
TTGATAAATGAACCCATGGA+CGG 0.638539 1_2:+76906949 Msa0093850:CDS
AACATACATACCGAATCAGA+AGG 0.642123 1_2:-76903169 None:intergenic
AGGGACCCCAGGAACAACTC+CGG 0.643664 1_2:-76906443 None:intergenic
TGGCTGCCAATTGCTCATCA+CGG 0.645634 1_2:-76907717 None:intergenic
TCTGTTACTCCTCTCCTTTG+GGG 0.647741 1_2:-76908052 None:intergenic
ATTCAACAACTTATGGACAT+GGG 0.649122 1_2:+76906164 Msa0093850:CDS
ATGTACAGGGGAAAATGGAG+AGG 0.652561 1_2:-76908090 None:intergenic
TGAGCAGGAGGCAATCGGAA+GGG 0.655930 1_2:+76907506 Msa0093850:CDS
TAATCCAACTGAAACAGGTG+GGG 0.656148 1_2:+76906414 Msa0093850:CDS
ATATTTAGTTTCAAGCATTG+CGG 0.659936 1_2:+76906730 Msa0093850:intron
ACAGGTGTGGAATCTGGTGT+TGG 0.666566 1_2:-76904965 None:intergenic
CAACAACTTATGGACATGGG+TGG 0.667629 1_2:+76906167 Msa0093850:CDS
CACTACCGGAGTTGTTCCTG+GGG 0.671383 1_2:+76906438 Msa0093850:CDS
GGAAAAGATAATTACCCATG+CGG 0.704659 1_2:+76903317 Msa0093850:CDS
AAAACTATAGTAATGTACAG+GGG 0.734808 1_2:-76908102 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTGAATGAATATT+GGG - chr1_2:76903239-76903258 None:intergenic 10.0%
!! TTAGAATGTTATATATAATT+AGG - chr1_2:76903601-76903620 None:intergenic 10.0%
!!! TTTTTGTAACTTATTTTATT+TGG + chr1_2:76905050-76905069 Msa0093850:intron 10.0%
!! AAGAATGTTAATAAAAAAAG+AGG - chr1_2:76903198-76903217 None:intergenic 15.0%
!! AAAAAATTGAATGAATATTG+GGG - chr1_2:76903238-76903257 None:intergenic 15.0%
!! CAAAAAAATTGAATGAATAT+TGG - chr1_2:76903240-76903259 None:intergenic 15.0%
!!! GTAAGGTATTATTATTATTA+TGG + chr1_2:76903438-76903457 Msa0093850:intron 15.0%
!! ATCTAAATTACTTTCAATTT+AGG + chr1_2:76903473-76903492 Msa0093850:intron 15.0%
!! TCTAAATTACTTTCAATTTA+GGG + chr1_2:76903474-76903493 Msa0093850:intron 15.0%
!! AATAATAAACATACAATACA+AGG + chr1_2:76903734-76903753 Msa0093850:intron 15.0%
!!! CTCATTTTTTAATATCTTTT+TGG + chr1_2:76904863-76904882 Msa0093850:intron 15.0%
!! TACAAAAAAACATAAGTTTA+TGG - chr1_2:76905038-76905057 None:intergenic 15.0%
!! ATTAATTATAATATTAGACC+AGG - chr1_2:76905301-76905320 None:intergenic 15.0%
!!! ATGAACACTATTTTAATTTA+GGG - chr1_2:76905973-76905992 None:intergenic 15.0%
!!! TATGAACACTATTTTAATTT+AGG - chr1_2:76905974-76905993 None:intergenic 15.0%
!! TTTAACAATTATTTATATGC+AGG + chr1_2:76906342-76906361 Msa0093850:intron 15.0%
!! TTAACAATTATTTATATGCA+GGG + chr1_2:76906343-76906362 Msa0093850:intron 15.0%
!! GGTAAAAATAATAATTTGAA+TGG + chr1_2:76906495-76906514 Msa0093850:intron 15.0%
!! TCTCCATTTATAAAAATAAA+TGG + chr1_2:76907266-76907285 Msa0093850:intron 15.0%
!!! TCTCCATTTATTTTTATAAA+TGG - chr1_2:76907272-76907291 None:intergenic 15.0%
!! ATTTATAAAAATAAATGGAG+AGG + chr1_2:76907271-76907290 Msa0093850:intron 15.0%
!! CAAAATCATTAGTAAATAAA+TGG - chr1_2:76907917-76907936 None:intergenic 15.0%
!!! ATTTACTAATGATTTTGTAT+TGG + chr1_2:76907920-76907939 Msa0093850:three_prime_UTR 15.0%
!! AAAAATTGAATGAATATTGG+GGG - chr1_2:76903237-76903256 None:intergenic 20.0%
!!! GTTTTGTTATTATCAGATAA+TGG + chr1_2:76903265-76903284 Msa0093850:intron 20.0%
!! CTAAATTACTTTCAATTTAG+GGG + chr1_2:76903475-76903494 Msa0093850:intron 20.0%
!! TCTTTAATTATTGAGTATGA+TGG + chr1_2:76904151-76904170 Msa0093850:intron 20.0%
!! TCGTAGAATATAAATTTAGT+TGG + chr1_2:76904730-76904749 Msa0093850:intron 20.0%
!!! TGTATTACTGATTATAAGAA+TGG - chr1_2:76905239-76905258 None:intergenic 20.0%
!! TTATGGTTGTAATTTGAATT+TGG + chr1_2:76905275-76905294 Msa0093850:intron 20.0%
!! ATTATTATTGAACAGAACTT+TGG - chr1_2:76905738-76905757 None:intergenic 20.0%
!! ATCAAATAAGATAAATCACA+AGG - chr1_2:76906318-76906337 None:intergenic 20.0%
!!! CAAATTATTATTTTTACCTG+TGG - chr1_2:76906493-76906512 None:intergenic 20.0%
!! CAAAATAAAGTACAAAGTAA+CGG - chr1_2:76906561-76906580 None:intergenic 20.0%
!! TATAATAGAAACATGACTAT+GGG - chr1_2:76907060-76907079 None:intergenic 20.0%
!! TTATAATAGAAACATGACTA+TGG - chr1_2:76907061-76907080 None:intergenic 20.0%
!! TTGAAACTAATTAATGATGT+TGG + chr1_2:76907183-76907202 Msa0093850:intron 20.0%
!! TGAAACTAATTAATGATGTT+GGG + chr1_2:76907184-76907203 Msa0093850:intron 20.0%
!!! TATTAGAGATAATTTTGATC+AGG + chr1_2:76907443-76907462 Msa0093850:intron 20.0%
!!! TCAATTTCATTTTTTTGCAA+AGG - chr1_2:76907600-76907619 None:intergenic 20.0%
!! AAAAACTATAGTAATGTACA+GGG - chr1_2:76908106-76908125 None:intergenic 20.0%
! AGAAGAAAAGAAAAAAGAGA+AGG + chr1_2:76902988-76903007 Msa0093850:five_prime_UTR 25.0%
! GAAGAAAAGAAAAAAGAGAA+GGG + chr1_2:76902989-76903008 Msa0093850:five_prime_UTR 25.0%
! AAGAATATTGAAGACATTCA+AGG + chr1_2:76903296-76903315 Msa0093850:CDS 25.0%
! TCCACTTATAAGTTGTTTAA+CGG + chr1_2:76903524-76903543 Msa0093850:intron 25.0%
! TATAAGAATTTAATGCAGCA+TGG + chr1_2:76903696-76903715 Msa0093850:intron 25.0%
!!! TCCTTAAATCCTTTTTTTGA+AGG + chr1_2:76903906-76903925 Msa0093850:intron 25.0%
!!! CCTTAAATCCTTTTTTTGAA+GGG + chr1_2:76903907-76903926 Msa0093850:intron 25.0%
!! AATTCGAATCCTTTTTCTAA+AGG + chr1_2:76903940-76903959 Msa0093850:intron 25.0%
!! ATTCGAATCCTTTTTCTAAA+GGG + chr1_2:76903941-76903960 Msa0093850:intron 25.0%
!! AATTCAAATCCTCTTTTTGA+AGG + chr1_2:76903974-76903993 Msa0093850:intron 25.0%
!! ATTCAAATCCTCTTTTTGAA+GGG + chr1_2:76903975-76903994 Msa0093850:intron 25.0%
! AACTGAACATTACTCTTAAA+AGG - chr1_2:76904020-76904039 None:intergenic 25.0%
! TAACAACATTGAAGTAAAGT+AGG - chr1_2:76904091-76904110 None:intergenic 25.0%
!!! GTTTTATTGCTATGTACTTT+AGG + chr1_2:76904127-76904146 Msa0093850:intron 25.0%
!! TATACCACTATAGCATTTTA+GGG + chr1_2:76904263-76904282 Msa0093850:intron 25.0%
!!! AGAGATTATTTTTTCCTTCA+GGG - chr1_2:76904626-76904645 None:intergenic 25.0%
!!! TAGAGATTATTTTTTCCTTC+AGG - chr1_2:76904627-76904646 None:intergenic 25.0%
!!! TGTTTTTTGGGATCTAATTT+AGG - chr1_2:76904678-76904697 None:intergenic 25.0%
! TTATATTCTACGACCTAAAT+TGG - chr1_2:76904723-76904742 None:intergenic 25.0%
! AGACAAAATCTACATAAAGA+TGG - chr1_2:76905198-76905217 None:intergenic 25.0%
! ATTCTTGATGCTAAAAGTTA+TGG + chr1_2:76905258-76905277 Msa0093850:intron 25.0%
! GAGAGAAATAATTGAATAGA+TGG - chr1_2:76905341-76905360 None:intergenic 25.0%
!!! AATTTAATTTTACCATGACC+TGG - chr1_2:76905393-76905412 None:intergenic 25.0%
! AGGTCATGGTAAAATTAAAT+TGG + chr1_2:76905392-76905411 Msa0093850:intron 25.0%
! GGTCATGGTAAAATTAAATT+GGG + chr1_2:76905393-76905412 Msa0093850:intron 25.0%
!! TCTATTCTTCATTTTAGACT+AGG - chr1_2:76905857-76905876 None:intergenic 25.0%
!! TTTAGGGTGTAACTATAATT+AGG - chr1_2:76905957-76905976 None:intergenic 25.0%
! ACATTGAAATGTATTTCAGA+AGG - chr1_2:76906066-76906085 None:intergenic 25.0%
! GAAACTAAATATGCAGAATA+TGG - chr1_2:76906722-76906741 None:intergenic 25.0%
!! ATATTTAGTTTCAAGCATTG+CGG + chr1_2:76906730-76906749 Msa0093850:intron 25.0%
! AAAATAGATAGTTAGATACC+TGG - chr1_2:76906785-76906804 None:intergenic 25.0%
! ATGATTGTAAAATGCAAAGA+TGG - chr1_2:76907029-76907048 None:intergenic 25.0%
! TACACACAAAATATAGATGT+GGG - chr1_2:76907228-76907247 None:intergenic 25.0%
! ATACACACAAAATATAGATG+TGG - chr1_2:76907229-76907248 None:intergenic 25.0%
! TAAAAATGAATCAGCACATA+TGG - chr1_2:76907627-76907646 None:intergenic 25.0%
! CAAAAACTATGAATCATTGT+AGG - chr1_2:76907789-76907808 None:intergenic 25.0%
!! ATGATTCATAGTTTTTGTTC+AGG + chr1_2:76907792-76907811 Msa0093850:three_prime_UTR 25.0%
!! AATTTTTCTTCTGTCTTTCT+AGG + chr1_2:76907847-76907866 Msa0093850:three_prime_UTR 25.0%
!! ATTTTTCTTCTGTCTTTCTA+GGG + chr1_2:76907848-76907867 Msa0093850:three_prime_UTR 25.0%
! AAAACTATAGTAATGTACAG+GGG - chr1_2:76908105-76908124 None:intergenic 25.0%
! GAAAAACTATAGTAATGTAC+AGG - chr1_2:76908107-76908126 None:intergenic 25.0%
AAAAGAAAAAAGAGAAGGGA+AGG + chr1_2:76902993-76903012 Msa0093850:five_prime_UTR 30.0%
AAAGAAAAAAGAGAAGGGAA+GGG + chr1_2:76902994-76903013 Msa0093850:five_prime_UTR 30.0%
AAAGTATACGACTATTGCTA+GGG + chr1_2:76903047-76903066 Msa0093850:five_prime_UTR 30.0%
GTTAAACAACTTATAAGTGG+AGG - chr1_2:76903525-76903544 None:intergenic 30.0%
CCCTTCAAAAAAAGGATTTA+AGG - chr1_2:76903910-76903929 None:intergenic 30.0%
CATTTACACCCTTCAAAAAA+AGG - chr1_2:76903918-76903937 None:intergenic 30.0%
! CATTTACACCCTTTAGAAAA+AGG - chr1_2:76903952-76903971 None:intergenic 30.0%
AAAATGCTATAGTGGTATAG+CGG - chr1_2:76904262-76904281 None:intergenic 30.0%
! CTATACCACTATAGCATTTT+AGG + chr1_2:76904262-76904281 Msa0093850:intron 30.0%
! ATACCACTATAGCATTTTAG+GGG + chr1_2:76904264-76904283 Msa0093850:intron 30.0%
ATACCTCTAGCAAAACTATA+GGG + chr1_2:76904334-76904353 Msa0093850:intron 30.0%
! TTCTCAACAGATTAGGTTTT+AGG + chr1_2:76904385-76904404 Msa0093850:intron 30.0%
AACAGTAAAATGGTAGATTG+TGG - chr1_2:76904782-76904801 None:intergenic 30.0%
CTGCAAATAGAACAGTAAAA+TGG - chr1_2:76904792-76904811 None:intergenic 30.0%
AAGTTTATGGAAAAGCTACA+CGG - chr1_2:76905025-76905044 None:intergenic 30.0%
! ATGTAGATTTTGTCTGATGA+AGG + chr1_2:76905203-76905222 Msa0093850:intron 30.0%
TTCTCTCTCTCAAAACTATA+AGG + chr1_2:76905354-76905373 Msa0093850:intron 30.0%
TCTCTCTCTCAAAACTATAA+GGG + chr1_2:76905355-76905374 Msa0093850:intron 30.0%
! ACAAGACTTGTTCAAGTATA+AGG - chr1_2:76905789-76905808 None:intergenic 30.0%
! TATACTTGAACAAGTCTTGT+AGG + chr1_2:76905789-76905808 Msa0093850:intron 30.0%
! ATTTTCTCAGCCTAAAGTTT+GGG - chr1_2:76905834-76905853 None:intergenic 30.0%
GAAACTTGAGTTAGTATGTA+GGG - chr1_2:76905935-76905954 None:intergenic 30.0%
! AATTTGTTTATTGCAGCAAG+AGG - chr1_2:76906007-76906026 None:intergenic 30.0%
! AGTGTTACTACAGATACTTA+TGG + chr1_2:76906095-76906114 Msa0093850:intron 30.0%
TATTCAACAACTTATGGACA+TGG + chr1_2:76906163-76906182 Msa0093850:CDS 30.0%
ATTCAACAACTTATGGACAT+GGG + chr1_2:76906164-76906183 Msa0093850:CDS 30.0%
!!! TTTTGAGTTGAAACTCTTTC+AGG + chr1_2:76906576-76906595 Msa0093850:intron 30.0%
! ATCATCTAATACCTGTCTTT+TGG + chr1_2:76906809-76906828 Msa0093850:intron 30.0%
TGTTTCTTTATCTCTCCAAA+TGG - chr1_2:76907156-76907175 None:intergenic 30.0%
TGTGTGTATCTCTTTCTAAA+TGG + chr1_2:76907240-76907259 Msa0093850:intron 30.0%
!! TAGAGATAATTTTGATCAGG+CGG + chr1_2:76907446-76907465 Msa0093850:intron 30.0%
!!! CATTTTTTTGCAAAGGCATA+AGG - chr1_2:76907593-76907612 None:intergenic 30.0%
! TCTTTCTAGGGAAATTTATG+TGG + chr1_2:76907860-76907879 Msa0093850:three_prime_UTR 30.0%
!! TTTCGTTTTTCTCTAGTAAG+AGG - chr1_2:76907999-76908018 None:intergenic 30.0%
! GAAAGTATACGACTATTGCT+AGG + chr1_2:76903046-76903065 Msa0093850:five_prime_UTR 35.0%
TCCATTATTCCATTCGATTC+CGG + chr1_2:76903079-76903098 Msa0093850:five_prime_UTR 35.0%
! TCACAGTGAAGACTTTGAAA+GGG + chr1_2:76903122-76903141 Msa0093850:CDS 35.0%
GATGAACTCTGATTTCGAAA+TGG - chr1_2:76903150-76903169 None:intergenic 35.0%
AACATACATACCGAATCAGA+AGG - chr1_2:76903172-76903191 None:intergenic 35.0%
GGAAAAGATAATTACCCATG+CGG + chr1_2:76903317-76903336 Msa0093850:CDS 35.0%
!! CAACAATTGCTGATTCACAA+TGG + chr1_2:76903341-76903360 Msa0093850:CDS 35.0%
! GACAATAAAGTCTCTGAAGA+TGG + chr1_2:76903395-76903414 Msa0093850:CDS 35.0%
! TCTTGTTGTCATGCTTAGTA+AGG + chr1_2:76903421-76903440 Msa0093850:CDS 35.0%
GCCGTTAAACAACTTATAAG+TGG - chr1_2:76903528-76903547 None:intergenic 35.0%
ATACACCGAAATCCTAATAG+CGG - chr1_2:76903883-76903902 None:intergenic 35.0%
CATTAACACCCTTCAAAAAG+AGG - chr1_2:76903986-76904005 None:intergenic 35.0%
!!! TTTTGCTAGAGGTATCTTGT+AGG - chr1_2:76904329-76904348 None:intergenic 35.0%
GATACCTCTAGCAAAACTAT+AGG + chr1_2:76904333-76904352 Msa0093850:intron 35.0%
TGTAGAGTTCTCAACAGATT+AGG + chr1_2:76904378-76904397 Msa0093850:intron 35.0%
TATTTGCAGAGTAAAGCCTT+GGG + chr1_2:76904803-76904822 Msa0093850:intron 35.0%
!! AGTTATAGGTGGATTGCTAA+CGG - chr1_2:76904942-76904961 None:intergenic 35.0%
AGACAAAAGCCATACTTTGT+AGG - chr1_2:76905121-76905140 None:intergenic 35.0%
! CTTTTGTCTCTATGTTTCTC+TGG + chr1_2:76905132-76905151 Msa0093850:intron 35.0%
GTTGTAATTTGAATTTGGCC+TGG + chr1_2:76905280-76905299 Msa0093850:intron 35.0%
TCAGATCACAGAAAATCATC+AGG - chr1_2:76905423-76905442 None:intergenic 35.0%
ATTTGTACAACCCCAACTTA+GGG - chr1_2:76905496-76905515 None:intergenic 35.0%
! TGGGGTTGTACAAATGTTTT+TGG + chr1_2:76905501-76905520 Msa0093850:intron 35.0%
! GGGGTTGTACAAATGTTTTT+GGG + chr1_2:76905502-76905521 Msa0093850:intron 35.0%
!!! TTGTACAAATGTTTTTGGGC+TGG + chr1_2:76905506-76905525 Msa0093850:intron 35.0%
AATGAAGTTGTACACAAGTC+TGG - chr1_2:76905576-76905595 None:intergenic 35.0%
! AAAGTTTGGGTTACTCACAA+TGG - chr1_2:76905821-76905840 None:intergenic 35.0%
TTGTGAGTAACCCAAACTTT+AGG + chr1_2:76905821-76905840 Msa0093850:intron 35.0%
! GATTTTCTCAGCCTAAAGTT+TGG - chr1_2:76905835-76905854 None:intergenic 35.0%
! GTAGGGATTTAGGTTTACTT+AGG - chr1_2:76905918-76905937 None:intergenic 35.0%
GAGTTAGTATGTAGGGATTT+AGG - chr1_2:76905928-76905947 None:intergenic 35.0%
GGAAACTTGAGTTAGTATGT+AGG - chr1_2:76905936-76905955 None:intergenic 35.0%
TACTACAGATACTTATGGAC+AGG + chr1_2:76906100-76906119 Msa0093850:CDS 35.0%
GCAGACTATTCAACAACTTA+TGG + chr1_2:76906157-76906176 Msa0093850:CDS 35.0%
GAATCAACAATGAGCAGTTT+AGG - chr1_2:76906283-76906302 None:intergenic 35.0%
CTGTTTCAGTTGGATTACTT+GGG - chr1_2:76906411-76906430 None:intergenic 35.0%
ACCTGTGGAAACATATTCAA+GGG - chr1_2:76906478-76906497 None:intergenic 35.0%
TACCTGTGGAAACATATTCA+AGG - chr1_2:76906479-76906498 None:intergenic 35.0%
GGCAAAAGATGTAAATGACA+AGG - chr1_2:76906540-76906559 None:intergenic 35.0%
ATGAAACAAAATGCCTACCT+GGG - chr1_2:76906659-76906678 None:intergenic 35.0%
TTAGATACCTGGAGAATTTG+TGG - chr1_2:76906774-76906793 None:intergenic 35.0%
CAAACAAATGACCAAAAGAC+AGG - chr1_2:76906823-76906842 None:intergenic 35.0%
!! TCAGTTGATAAATGAACCCA+TGG + chr1_2:76906945-76906964 Msa0093850:CDS 35.0%
TTGATAAATGAACCCATGGA+CGG + chr1_2:76906949-76906968 Msa0093850:CDS 35.0%
AGTATACTGCTTTCCATGTA+TGG + chr1_2:76906984-76907003 Msa0093850:intron 35.0%
AAACTATCACAGACCATACA+TGG - chr1_2:76907000-76907019 None:intergenic 35.0%
! AATGGAGATCTAAAATGGAG+AGG - chr1_2:76907129-76907148 None:intergenic 35.0%
GTAGGAATGGAGATCTAAAA+TGG - chr1_2:76907134-76907153 None:intergenic 35.0%
TCTTTATCTCTCCAAATGGT+AGG - chr1_2:76907152-76907171 None:intergenic 35.0%
TTACCTTCATGTCACAAACA+TGG - chr1_2:76907314-76907333 None:intergenic 35.0%
! AGCATTTTCCAGTAAGTAGT+TGG - chr1_2:76907740-76907759 None:intergenic 35.0%
AACTACTTACTGGAAAATGC+TGG + chr1_2:76907739-76907758 Msa0093850:CDS 35.0%
ACTACTTACTGGAAAATGCT+GGG + chr1_2:76907740-76907759 Msa0093850:CDS 35.0%
! TTTTCTCCTTTTTGCAAGGA+GGG + chr1_2:76907816-76907835 Msa0093850:three_prime_UTR 35.0%
ATGTGGTAGAGTTTCTGATT+TGG + chr1_2:76907877-76907896 Msa0093850:three_prime_UTR 35.0%
!! GTAGAGTTTCTGATTTGGAT+TGG + chr1_2:76907882-76907901 Msa0093850:three_prime_UTR 35.0%
TTAGCTATCTTCCCTGATTT+AGG + chr1_2:76907965-76907984 Msa0093850:three_prime_UTR 35.0%
!!! CTATTTTTTTCTCTCCCCAA+AGG + chr1_2:76908038-76908057 Msa0093850:three_prime_UTR 35.0%
TAGTAATGTACAGGGGAAAA+TGG - chr1_2:76908098-76908117 None:intergenic 35.0%
TCCGGAATCGAATGGAATAA+TGG - chr1_2:76903083-76903102 None:intergenic 40.0%
TATTCCATTCGATTCCGGAT+CGG + chr1_2:76903084-76903103 Msa0093850:five_prime_UTR 40.0%
CTCACAGTGAAGACTTTGAA+AGG + chr1_2:76903121-76903140 Msa0093850:CDS 40.0%
CAGAGTTCATCCTTCTGATT+CGG + chr1_2:76903159-76903178 Msa0093850:CDS 40.0%
! GGCTGAATTTTGCACTATCA+GGG + chr1_2:76903496-76903515 Msa0093850:intron 40.0%
TTCTGCTAGAGTGACACTAT+TGG - chr1_2:76903767-76903786 None:intergenic 40.0%
!! TATAGTGGTATAGCGGATAG+CGG - chr1_2:76904255-76904274 None:intergenic 40.0%
!! CTACCCTATAGTTTTGCTAG+AGG - chr1_2:76904340-76904359 None:intergenic 40.0%
!! AATGCAGGCTAGTTCTATCT+TGG - chr1_2:76904502-76904521 None:intergenic 40.0%
! AGATAGAACTAGCCTGCATT+TGG + chr1_2:76904502-76904521 Msa0093850:intron 40.0%
! CGTACTCGGAAATCTTGTTT+AGG - chr1_2:76904574-76904593 None:intergenic 40.0%
GGTTAATCTTAGCACGTACT+CGG - chr1_2:76904588-76904607 None:intergenic 40.0%
TCAGGGACTTTATACTCTTC+TGG - chr1_2:76904609-76904628 None:intergenic 40.0%
! GAAGAGTATAAAGTCCCTGA+AGG + chr1_2:76904609-76904628 Msa0093850:intron 40.0%
!!! AGGGTGACGTAGTGTTTTTT+GGG - chr1_2:76904690-76904709 None:intergenic 40.0%
CTATTTGCAGAGTAAAGCCT+TGG + chr1_2:76904802-76904821 Msa0093850:intron 40.0%
CAGTCACTAACTCATACAAG+AGG - chr1_2:76904904-76904923 None:intergenic 40.0%
TTTACCATGACCTGGTCTAT+TGG - chr1_2:76905385-76905404 None:intergenic 40.0%
! TGTTTCGTTCAAAGCTCTGA+AGG + chr1_2:76905451-76905470 Msa0093850:intron 40.0%
!! GTTTCGTTCAAAGCTCTGAA+GGG + chr1_2:76905452-76905471 Msa0093850:intron 40.0%
CATTTGTACAACCCCAACTT+AGG - chr1_2:76905497-76905516 None:intergenic 40.0%
TAGAATCCTAATCGAACCAC+AGG + chr1_2:76905873-76905892 Msa0093850:intron 40.0%
AGAATCCTAATCGAACCACA+GGG + chr1_2:76905874-76905893 Msa0093850:intron 40.0%
ATTTCAGAAGGTTTGACGAC+AGG - chr1_2:76906054-76906073 None:intergenic 40.0%
GCTGCTTCAAATTTAGTTGC+TGG + chr1_2:76906122-76906141 Msa0093850:CDS 40.0%
CCTGTTTCAGTTGGATTACT+TGG - chr1_2:76906412-76906431 None:intergenic 40.0%
CCAAGTAATCCAACTGAAAC+AGG + chr1_2:76906409-76906428 Msa0093850:CDS 40.0%
AGTAATCCAACTGAAACAGG+TGG + chr1_2:76906412-76906431 Msa0093850:CDS 40.0%
GTAATCCAACTGAAACAGGT+GGG + chr1_2:76906413-76906432 Msa0093850:CDS 40.0%
TAATCCAACTGAAACAGGTG+GGG + chr1_2:76906414-76906433 Msa0093850:CDS 40.0%
TATTCAAGGGAGACGAGTTA+GGG - chr1_2:76906465-76906484 None:intergenic 40.0%
ATATTCAAGGGAGACGAGTT+AGG - chr1_2:76906466-76906485 None:intergenic 40.0%
TCCCTTGAATATGTTTCCAC+AGG + chr1_2:76906474-76906493 Msa0093850:CDS 40.0%
CTCTTTCAGGAGACAATTTC+TGG + chr1_2:76906589-76906608 Msa0093850:intron 40.0%
TGAAACAAAATGCCTACCTG+GGG - chr1_2:76906658-76906677 None:intergenic 40.0%
GATGAAACAAAATGCCTACC+TGG - chr1_2:76906660-76906679 None:intergenic 40.0%
ATCCAATCCACAAATTCTCC+AGG + chr1_2:76906764-76906783 Msa0093850:CDS 40.0%
TACCTGGAGAATTTGTGGAT+TGG - chr1_2:76906769-76906788 None:intergenic 40.0%
TCAATAAGTCTCAAGAGACC+TGG - chr1_2:76906904-76906923 None:intergenic 40.0%
AAATGGAGAGGATCTTGACT+CGG - chr1_2:76907117-76907136 None:intergenic 40.0%
AGATCTCCATTCCTACCATT+TGG + chr1_2:76907138-76907157 Msa0093850:intron 40.0%
ATCTCTCCAAATGGTAGGAA+TGG - chr1_2:76907147-76907166 None:intergenic 40.0%
AAACATGGCAAAGACGAGTT+AGG - chr1_2:76907299-76907318 None:intergenic 40.0%
TTGCCATGTTTGTGACATGA+AGG + chr1_2:76907308-76907327 Msa0093850:intron 40.0%
!!! GGTAATGTTTTGACCTGTTG+TGG + chr1_2:76907329-76907348 Msa0093850:intron 40.0%
TAAATGCTACAGATGCTTCC+TGG - chr1_2:76907363-76907382 None:intergenic 40.0%
CAAAAATGCCTCTATGACAG+AGG - chr1_2:76907689-76907708 None:intergenic 40.0%
!!! CTCTGTCATAGAGGCATTTT+TGG + chr1_2:76907687-76907706 Msa0093850:CDS 40.0%
CTACTTACTGGAAAATGCTG+GGG + chr1_2:76907741-76907760 Msa0093850:CDS 40.0%
! AGGCTTTTCTCCTTTTTGCA+AGG + chr1_2:76907812-76907831 Msa0093850:three_prime_UTR 40.0%
! CTTTTCTCCTTTTTGCAAGG+AGG + chr1_2:76907815-76907834 Msa0093850:three_prime_UTR 40.0%
ATCTTCCCTGATTTAGGCTT+TGG + chr1_2:76907971-76907990 Msa0093850:three_prime_UTR 40.0%
AGGAACCAAAGCCTAAATCA+GGG - chr1_2:76907979-76907998 None:intergenic 40.0%
ATCTGTTACTCCTCTCCTTT+GGG - chr1_2:76908056-76908075 None:intergenic 40.0%
AATCTGTTACTCCTCTCCTT+TGG - chr1_2:76908057-76908076 None:intergenic 40.0%
GAGTAACAGATTGTGGAGTT+AGG + chr1_2:76908065-76908084 Msa0093850:three_prime_UTR 40.0%
TCAGCAATTGTTGTCCGCAT+GGG - chr1_2:76903334-76903353 None:intergenic 45.0%
ATCAGCAATTGTTGTCCGCA+TGG - chr1_2:76903335-76903354 None:intergenic 45.0%
! GGGCTGAATTTTGCACTATC+AGG + chr1_2:76903495-76903514 Msa0093850:intron 45.0%
CGACAGAGGAATAGAGTGAA+AGG - chr1_2:76903550-76903569 None:intergenic 45.0%
GTGATGAATGTTGTCGACAG+AGG - chr1_2:76903564-76903583 None:intergenic 45.0%
TCGAAAAAGAGCTGTAGCGA+TGG + chr1_2:76903647-76903666 Msa0093850:intron 45.0%
TGTGTGAGCAAGAACACAAC+AGG - chr1_2:76904049-76904068 None:intergenic 45.0%
GAGCCCCTAAAATGCTATAG+TGG - chr1_2:76904270-76904289 None:intergenic 45.0%
AAGCAACATGTGAGAGAAGC+GGG - chr1_2:76904530-76904549 None:intergenic 45.0%
GAAGCAACATGTGAGAGAAG+CGG - chr1_2:76904531-76904550 None:intergenic 45.0%
!!! GAGGGTGACGTAGTGTTTTT+TGG - chr1_2:76904691-76904710 None:intergenic 45.0%
TGCTGGAACTTCATCTACTC+AGG + chr1_2:76904829-76904848 Msa0093850:intron 45.0%
!! TCTGGTGTTGGCACAGTTAT+AGG - chr1_2:76904956-76904975 None:intergenic 45.0%
TGTACTACAGGTGTGGAATC+TGG - chr1_2:76904974-76904993 None:intergenic 45.0%
ACTCACTGAGTCTGTACTAC+AGG - chr1_2:76904986-76905005 None:intergenic 45.0%
GTTGTGGCACCTACAAAGTA+TGG + chr1_2:76905109-76905128 Msa0093850:intron 45.0%
AACTTAGGGTTGGGCAGAAT+TGG - chr1_2:76905482-76905501 None:intergenic 45.0%
AATTCTGCCCAACCCTAAGT+TGG + chr1_2:76905481-76905500 Msa0093850:intron 45.0%
ATTCTGCCCAACCCTAAGTT+GGG + chr1_2:76905482-76905501 Msa0093850:intron 45.0%
TACAACCCCAACTTAGGGTT+GGG - chr1_2:76905491-76905510 None:intergenic 45.0%
CTGTCTCATTGCCATGAGAA+AGG + chr1_2:76905550-76905569 Msa0093850:intron 45.0%
GTGATGTCTGAATGCAGTCA+GGG - chr1_2:76905601-76905620 None:intergenic 45.0%
AGTGATGTCTGAATGCAGTC+AGG - chr1_2:76905602-76905621 None:intergenic 45.0%
ATCTAGTACAGCATTCCCTG+TGG - chr1_2:76905892-76905911 None:intergenic 45.0%
GACGACAGGATAGAGGTAAA+TGG - chr1_2:76906040-76906059 None:intergenic 45.0%
AAGGTTTGACGACAGGATAG+AGG - chr1_2:76906047-76906066 None:intergenic 45.0%
CAACAACTTATGGACATGGG+TGG + chr1_2:76906167-76906186 Msa0093850:CDS 45.0%
AAGTAATCTACAGCACGCTC+TGG - chr1_2:76906248-76906267 None:intergenic 45.0%
! ACAGCAATTTCTGCTGCTTC+AGG - chr1_2:76906373-76906392 None:intergenic 45.0%
AGCAGCAGAAATTGCTGTAC+CGG + chr1_2:76906375-76906394 Msa0093850:CDS 45.0%
!! TTACTTGGGTATTGAGCAGC+CGG - chr1_2:76906397-76906416 None:intergenic 45.0%
! GTTTCAAGCATTGCGGACAA+TGG + chr1_2:76906737-76906756 Msa0093850:intron 45.0%
TCTATTGCAGCCTGTACTTC+AGG + chr1_2:76906861-76906880 Msa0093850:intron 45.0%
! CCTGGATTAGATACCACAAC+AGG - chr1_2:76907345-76907364 None:intergenic 45.0%
CCTGTTGTGGTATCTAATCC+AGG + chr1_2:76907342-76907361 Msa0093850:intron 45.0%
TACCTATGACATGCAGCTAG+AGG + chr1_2:76907645-76907664 Msa0093850:intron 45.0%
TGATAGAGCCTCTGTCATAG+AGG + chr1_2:76907678-76907697 Msa0093850:CDS 45.0%
ATGTGACCGTGATGAGCAAT+TGG + chr1_2:76907711-76907730 Msa0093850:CDS 45.0%
ATTGGCAGCCAACTACTTAC+TGG + chr1_2:76907729-76907748 Msa0093850:CDS 45.0%
! GGAAAATGCTGGGGATTTTG+AGG + chr1_2:76907750-76907769 Msa0093850:CDS 45.0%
AAACCACCCTCCTTGCAAAA+AGG - chr1_2:76907825-76907844 None:intergenic 45.0%
GAGGAACCAAAGCCTAAATC+AGG - chr1_2:76907980-76907999 None:intergenic 45.0%
! TTTTTCTCTCCCCAAAGGAG+AGG + chr1_2:76908043-76908062 Msa0093850:three_prime_UTR 45.0%
TCTGTTACTCCTCTCCTTTG+GGG - chr1_2:76908055-76908074 None:intergenic 45.0%
AGGAGAGGAGTAACAGATTG+TGG + chr1_2:76908058-76908077 Msa0093850:three_prime_UTR 45.0%
ATGTACAGGGGAAAATGGAG+AGG - chr1_2:76908093-76908112 None:intergenic 45.0%
!!! TTCTATTATAAATAATTTTT+CGG + chr1_2:76907070-76907089 Msa0093850:intron 5.0%
CTTCATGACTGACACCGATC+CGG - chr1_2:76903101-76903120 None:intergenic 50.0%
CTAGCAGAATAGTGTAGCCG+TGG + chr1_2:76903778-76903797 Msa0093850:intron 50.0%
!!! GGAGTTTGGTGCAACGCTTT+TGG + chr1_2:76903802-76903821 Msa0093850:intron 50.0%
TATTGCTGACAGCGGTTTGC+AGG - chr1_2:76903828-76903847 None:intergenic 50.0%
CAAACCGCTGTCAGCAATAC+CGG + chr1_2:76903829-76903848 Msa0093850:intron 50.0%
ACAACCGGTATTGCTGACAG+CGG - chr1_2:76903836-76903855 None:intergenic 50.0%
! GTCAGCAATACCGGTTGTTG+CGG + chr1_2:76903838-76903857 Msa0093850:intron 50.0%
!! TCCTAATAGCGGACGCGATA+GGG - chr1_2:76903872-76903891 None:intergenic 50.0%
!! ATCCTAATAGCGGACGCGAT+AGG - chr1_2:76903873-76903892 None:intergenic 50.0%
CGCGTCCGCTATTAGGATTT+CGG + chr1_2:76903875-76903894 Msa0093850:intron 50.0%
TAATCCCAGACAGTGTCACG+TGG - chr1_2:76904297-76904316 None:intergenic 50.0%
CTAAATTGGCCCCAGAGAGA+GGG - chr1_2:76904709-76904728 None:intergenic 50.0%
AGTAAAGCCTTGGGATCTGC+TGG + chr1_2:76904812-76904831 Msa0093850:intron 50.0%
TGAAGTTCCAGCAGATCCCA+AGG - chr1_2:76904822-76904841 None:intergenic 50.0%
!! GGTGTTGGCACAGTTATAGG+TGG - chr1_2:76904953-76904972 None:intergenic 50.0%
ACAGGTGTGGAATCTGGTGT+TGG - chr1_2:76904968-76904987 None:intergenic 50.0%
CTGAGTCTGTACTACAGGTG+TGG - chr1_2:76904981-76905000 None:intergenic 50.0%
! TTTGTAGGTGCCACAACTGC+AGG - chr1_2:76905106-76905125 None:intergenic 50.0%
TAAGGGCAAGCCAATAGACC+AGG + chr1_2:76905372-76905391 Msa0093850:intron 50.0%
CAAGCCAATAGACCAGGTCA+TGG + chr1_2:76905378-76905397 Msa0093850:intron 50.0%
!! CGTTCAAAGCTCTGAAGGGA+AGG + chr1_2:76905456-76905475 Msa0093850:intron 50.0%
TTCTGCCCAACCCTAAGTTG+GGG + chr1_2:76905483-76905502 Msa0093850:intron 50.0%
GTACAACCCCAACTTAGGGT+TGG - chr1_2:76905492-76905511 None:intergenic 50.0%
! CACAAGTCTGGCCTTTCTCA+TGG - chr1_2:76905564-76905583 None:intergenic 50.0%
GCATTCCCTGTGGTTCGATT+AGG - chr1_2:76905882-76905901 None:intergenic 50.0%
CAACTTATGGACATGGGTGG+TGG + chr1_2:76906170-76906189 Msa0093850:CDS 50.0%
! AGCACGAAGAGCACGATTGA+CGG - chr1_2:76906213-76906232 None:intergenic 50.0%
TCACTACCGGAGTTGTTCCT+GGG + chr1_2:76906437-76906456 Msa0093850:CDS 50.0%
!! CAGGAGACAATTTCTGGTGC+TGG + chr1_2:76906595-76906614 Msa0093850:intron 50.0%
!! ACAATTTCTGGTGCTGGAGC+TGG + chr1_2:76906601-76906620 Msa0093850:CDS 50.0%
! CTGGTTCGCTTGACTTCTTG+AGG + chr1_2:76906626-76906645 Msa0093850:CDS 50.0%
CTTCTTGAGGAACAATCCCC+AGG + chr1_2:76906639-76906658 Msa0093850:CDS 50.0%
TTGAGGAACAATCCCCAGGT+AGG + chr1_2:76906643-76906662 Msa0093850:intron 50.0%
TTTCCGAGCTCCTGAAGTAC+AGG - chr1_2:76906874-76906893 None:intergenic 50.0%
GAGCTCGGAAAGCAAAATCC+AGG + chr1_2:76906883-76906902 Msa0093850:CDS 50.0%
! AACCCATGGACGGTACTGAA+GGG + chr1_2:76906959-76906978 Msa0093850:CDS 50.0%
TGATGTTGGGACCCACTTGT+TGG + chr1_2:76907197-76907216 Msa0093850:intron 50.0%
TGTGGGTCCTACCAACAAGT+GGG - chr1_2:76907211-76907230 None:intergenic 50.0%
ATGTGGGTCCTACCAACAAG+TGG - chr1_2:76907212-76907231 None:intergenic 50.0%
AGCCTCTAGCTGCATGTCAT+AGG - chr1_2:76907650-76907669 None:intergenic 50.0%
TGACATGCAGCTAGAGGCTA+TGG + chr1_2:76907651-76907670 Msa0093850:intron 50.0%
GACATGCAGCTAGAGGCTAT+GGG + chr1_2:76907652-76907671 Msa0093850:intron 50.0%
TGGCTGCCAATTGCTCATCA+CGG - chr1_2:76907720-76907739 None:intergenic 50.0%
! TCTCCTTTTTGCAAGGAGGG+TGG + chr1_2:76907819-76907838 Msa0093850:three_prime_UTR 50.0%
! AAGGGAAGAGAAGAGCGTGG+TGG + chr1_2:76903012-76903031 Msa0093850:five_prime_UTR 55.0%
! AGGGAAGAGAAGAGCGTGGT+GGG + chr1_2:76903013-76903032 Msa0093850:five_prime_UTR 55.0%
!! GAGCGTGGTGGGTGAAAAAG+AGG + chr1_2:76903024-76903043 Msa0093850:five_prime_UTR 55.0%
GACACCGATCCGGAATCGAA+TGG - chr1_2:76903091-76903110 None:intergenic 55.0%
GCAGAATAGTGTAGCCGTGG+TGG + chr1_2:76903781-76903800 Msa0093850:intron 55.0%
! AGTGTAGCCGTGGTGGAGTT+TGG + chr1_2:76903788-76903807 Msa0093850:intron 55.0%
CGTTGCACCAAACTCCACCA+CGG - chr1_2:76903798-76903817 None:intergenic 55.0%
AGCACCACGTGACACTGTCT+GGG + chr1_2:76904290-76904309 Msa0093850:intron 55.0%
ACACTACGTCACCCTCTCTC+TGG + chr1_2:76904695-76904714 Msa0093850:intron 55.0%
CACTACGTCACCCTCTCTCT+GGG + chr1_2:76904696-76904715 Msa0093850:intron 55.0%
ACTACGTCACCCTCTCTCTG+GGG + chr1_2:76904697-76904716 Msa0093850:intron 55.0%
CCTAAATTGGCCCCAGAGAG+AGG - chr1_2:76904710-76904729 None:intergenic 55.0%
!! CCTCTCTCTGGGGCCAATTT+AGG + chr1_2:76904707-76904726 Msa0093850:intron 55.0%
CAACGCATCTCCTGCAGTTG+TGG + chr1_2:76905093-76905112 Msa0093850:CDS 55.0%
GTGACCCCACCTGTTTCAGT+TGG - chr1_2:76906421-76906440 None:intergenic 55.0%
GAAACAGGTGGGGTCACTAC+CGG + chr1_2:76906424-76906443 Msa0093850:CDS 55.0%
GTCACTACCGGAGTTGTTCC+TGG + chr1_2:76906436-76906455 Msa0093850:CDS 55.0%
CACTACCGGAGTTGTTCCTG+GGG + chr1_2:76906438-76906457 Msa0093850:CDS 55.0%
CAGCCTGTACTTCAGGAGCT+CGG + chr1_2:76906868-76906887 Msa0093850:intron 55.0%
! GAACCCATGGACGGTACTGA+AGG + chr1_2:76906958-76906977 Msa0093850:CDS 55.0%
CACCCTTCAGTACCGTCCAT+GGG - chr1_2:76906964-76906983 None:intergenic 55.0%
TCACCCTTCAGTACCGTCCA+TGG - chr1_2:76906965-76906984 None:intergenic 55.0%
! GTTGGGACCCACTTGTTGGT+AGG + chr1_2:76907201-76907220 Msa0093850:intron 55.0%
TAATGTGACGCCAGCTGAGC+AGG + chr1_2:76907491-76907510 Msa0093850:CDS 55.0%
TGAGCAGGAGGCAATCGGAA+GGG + chr1_2:76907506-76907525 Msa0093850:CDS 55.0%
GGGAAGGGAAGAGAAGAGCG+TGG + chr1_2:76903009-76903028 Msa0093850:five_prime_UTR 60.0%
GGCATTAGGGCCGCAACAAC+CGG - chr1_2:76903851-76903870 None:intergenic 60.0%
! GCGGACGCGATAGGGCATTA+GGG - chr1_2:76903864-76903883 None:intergenic 60.0%
! AGCGGACGCGATAGGGCATT+AGG - chr1_2:76903865-76903884 None:intergenic 60.0%
GCCCTATCGCGTCCGCTATT+AGG + chr1_2:76903868-76903887 Msa0093850:intron 60.0%
CAGCACCACGTGACACTGTC+TGG + chr1_2:76904289-76904308 Msa0093850:intron 60.0%
! GAGAAGCGGGCTCCAAATGC+AGG - chr1_2:76904517-76904536 None:intergenic 60.0%
AGGGACCCCAGGAACAACTC+CGG - chr1_2:76906446-76906465 None:intergenic 60.0%
CCAGCTGAGCAGGAGGCAAT+CGG + chr1_2:76907501-76907520 Msa0093850:CDS 60.0%
CTGAGCAGGAGGCAATCGGA+AGG + chr1_2:76907505-76907524 Msa0093850:CDS 60.0%
! TGGACATGGGTGGTGGCAGC+TGG + chr1_2:76906177-76906196 Msa0093850:CDS 65.0%
! GGACATGGGTGGTGGCAGCT+GGG + chr1_2:76906178-76906197 Msa0093850:CDS 65.0%
GGAGACGAGTTAGGGACCCC+AGG - chr1_2:76906457-76906476 None:intergenic 65.0%
! TCTGGTGCTGGAGCTGGAGC+TGG + chr1_2:76906607-76906626 Msa0093850:CDS 65.0%
TGTGACGCCAGCTGAGCAGG+AGG + chr1_2:76907494-76907513 Msa0093850:CDS 65.0%
CCGATTGCCTCCTGCTCAGC+TGG - chr1_2:76907504-76907523 None:intergenic 65.0%
! TGGGTGGTGGCAGCTGGGAC+AGG + chr1_2:76906183-76906202 Msa0093850:CDS 70.0%
! GGGTGGTGGCAGCTGGGACA+GGG + chr1_2:76906184-76906203 Msa0093850:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 76902983 76908128 76902983 ID=Msa0093850;Name=Msa0093850
chr1_2 mRNA 76902983 76908128 76902983 ID=Msa0093850-mRNA-1;Parent=Msa0093850;Name=Msa0093850-mRNA-1;_AED=0.12;_eAED=0.12;_QI=132|0.9|1|1|1|1|11|351|353
chr1_2 exon 76902983 76903180 76902983 ID=Msa0093850-mRNA-1:exon:27175;Parent=Msa0093850-mRNA-1
chr1_2 exon 76903281 76903442 76903281 ID=Msa0093850-mRNA-1:exon:27176;Parent=Msa0093850-mRNA-1
chr1_2 exon 76904938 76904999 76904938 ID=Msa0093850-mRNA-1:exon:27177;Parent=Msa0093850-mRNA-1
chr1_2 exon 76905081 76905125 76905081 ID=Msa0093850-mRNA-1:exon:27178;Parent=Msa0093850-mRNA-1
chr1_2 exon 76906097 76906274 76906097 ID=Msa0093850-mRNA-1:exon:27179;Parent=Msa0093850-mRNA-1
chr1_2 exon 76906364 76906495 76906364 ID=Msa0093850-mRNA-1:exon:27180;Parent=Msa0093850-mRNA-1
chr1_2 exon 76906598 76906660 76906598 ID=Msa0093850-mRNA-1:exon:27181;Parent=Msa0093850-mRNA-1
chr1_2 exon 76906738 76906785 76906738 ID=Msa0093850-mRNA-1:exon:27182;Parent=Msa0093850-mRNA-1
chr1_2 exon 76906871 76906980 76906871 ID=Msa0093850-mRNA-1:exon:27183;Parent=Msa0093850-mRNA-1
chr1_2 exon 76907449 76907527 76907449 ID=Msa0093850-mRNA-1:exon:27184;Parent=Msa0093850-mRNA-1
chr1_2 exon 76907661 76908128 76907661 ID=Msa0093850-mRNA-1:exon:27185;Parent=Msa0093850-mRNA-1
chr1_2 five_prime_UTR 76902983 76903114 76902983 ID=Msa0093850-mRNA-1:five_prime_utr;Parent=Msa0093850-mRNA-1
chr1_2 CDS 76903115 76903180 76903115 ID=Msa0093850-mRNA-1:cds;Parent=Msa0093850-mRNA-1
chr1_2 CDS 76903281 76903442 76903281 ID=Msa0093850-mRNA-1:cds;Parent=Msa0093850-mRNA-1
chr1_2 CDS 76904938 76904999 76904938 ID=Msa0093850-mRNA-1:cds;Parent=Msa0093850-mRNA-1
chr1_2 CDS 76905081 76905125 76905081 ID=Msa0093850-mRNA-1:cds;Parent=Msa0093850-mRNA-1
chr1_2 CDS 76906097 76906274 76906097 ID=Msa0093850-mRNA-1:cds;Parent=Msa0093850-mRNA-1
chr1_2 CDS 76906364 76906495 76906364 ID=Msa0093850-mRNA-1:cds;Parent=Msa0093850-mRNA-1
chr1_2 CDS 76906598 76906660 76906598 ID=Msa0093850-mRNA-1:cds;Parent=Msa0093850-mRNA-1
chr1_2 CDS 76906738 76906785 76906738 ID=Msa0093850-mRNA-1:cds;Parent=Msa0093850-mRNA-1
chr1_2 CDS 76906871 76906980 76906871 ID=Msa0093850-mRNA-1:cds;Parent=Msa0093850-mRNA-1
chr1_2 CDS 76907449 76907527 76907449 ID=Msa0093850-mRNA-1:cds;Parent=Msa0093850-mRNA-1
chr1_2 CDS 76907661 76907777 76907661 ID=Msa0093850-mRNA-1:cds;Parent=Msa0093850-mRNA-1
chr1_2 three_prime_UTR 76907778 76908128 76907778 ID=Msa0093850-mRNA-1:three_prime_utr;Parent=Msa0093850-mRNA-1
Gene Sequence

>Msa0093850

ATGAAGCTCACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGAGTTCATCCTTCTGATTCGATAATGGCTGTAAAAAAGAATATTGAAGACATTCAAGGAAAAGATAATTACCCATGCGGACAACAATTGCTGATTCACAATGGAAAAGTTCTCAAAGATGAAACTACTTTAGCTGACAATAAAGTCTCTGAAGATGGCTTTCTTGTTGTCATGCTTAGTAAGACCGTTAGCAATCCACCTATAACTGTGCCAACACCAGATTCCACACCTGTAGTACAGACTCAATCTGCAAACAACAACGCATCTCCTGCAGTTGTGGCACCTACAAATGTTACTACAGATACTTATGGACAGGCTGCTTCAAATTTAGTTGCTGGAAGTAATCTTGAGCAGACTATTCAACAACTTATGGACATGGGTGGTGGCAGCTGGGACAGGGATACCGTCAATCGTGCTCTTCGTGCTGCTTTCAATAATCCAGAGCGTGCTGTAGATTACTTGTATTCTGGAATTCCTGAAGCAGCAGAAATTGCTGTACCGGCTGCTCAATACCCAAGTAATCCAACTGAAACAGGTGGGGTCACTACCGGAGTTGTTCCTGGGGTCCCTAACTCGTCTCCCTTGAATATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGAGCTGGTTCGCTTGACTTCTTGAGGAACAATCCCCAGTTTCAAGCATTGCGGACAATGGTGCAATCCAATCCACAAATTCTCCAGCCTGTACTTCAGGAGCTCGGAAAGCAAAATCCAGGTCTCTTGAGACTTATTGACGAGCATCATTCTGAGTTTCTTCAGTTGATAAATGAACCCATGGACGGTACTGAAGGAGATAATTTTGATCAGGCGGAGCAAGACATGCCTCATGCTGTTAATGTGACGCCAGCTGAGCAGGAGGCAATCGGAAGGCTAGAGGCTATGGGATTTGATAGAGCCTCTGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGGGATTTTGAGGATTAA

Protein sequence

>Msa0093850

MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKTVSNPPITVPTPDSTPVVQTQSANNNASPAVVAPTNVTTDTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEIAVPAAQYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETISGAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED*